Query 024543
Match_columns 266
No_of_seqs 170 out of 351
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:06:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 1.2E-08 4.2E-13 69.6 4.4 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.4 1.5E-07 5.1E-12 86.6 4.0 80 4-83 5-94 (312)
3 2ovr_B FBW7, F-BOX/WD repeat p 98.0 2.8E-06 9.4E-11 78.1 3.1 49 1-49 16-64 (445)
4 2e31_A FBS1, F-box only protei 97.8 9.4E-06 3.2E-10 74.4 3.7 81 3-91 50-131 (297)
5 1p22_A F-BOX/WD-repeat protein 97.7 6.9E-06 2.3E-10 75.5 1.3 51 1-51 8-62 (435)
6 3v7d_B Cell division control p 97.7 9.1E-06 3.1E-10 74.6 2.0 48 1-48 12-60 (464)
7 2ast_B S-phase kinase-associat 96.5 0.0015 5.3E-08 57.8 3.8 44 4-47 9-52 (336)
8 2p1m_B Transport inhibitor res 95.2 0.01 3.5E-07 56.4 3.5 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 93.3 0.044 1.5E-06 52.1 3.2 33 6-38 15-48 (592)
10 1dyo_A Endo-1,4-beta-xylanase 91.1 5.2 0.00018 32.3 13.0 96 155-265 63-158 (160)
11 4hfx_A Transcription elongatio 81.7 0.49 1.7E-05 36.3 1.3 64 7-83 13-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 56.0 79 0.0027 30.4 10.8 94 154-264 77-170 (540)
13 2xom_A Arabinogalactan endo-1, 34.4 1.7E+02 0.0058 23.1 9.9 79 159-264 70-152 (152)
14 1gui_A Laminarinase 16A; carbo 34.2 1.6E+02 0.0054 22.6 12.6 86 156-263 68-155 (155)
15 3tes_A Tencon; fibronectin typ 31.2 57 0.0019 23.1 4.2 38 152-193 57-94 (98)
16 3qht_C Monobody YSMB-1; fibron 24.0 59 0.002 22.8 3.1 34 152-186 60-94 (97)
17 2edd_A Netrin receptor DCC; tu 23.0 2.2E+02 0.0077 20.8 7.8 16 155-170 83-98 (123)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.70 E-value=1.2e-08 Score=69.59 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543 3 ITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF 47 (266)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (266)
...+||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 357899999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=86.61 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=60.6
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcc---hhhccccCc-cc----cc--ccccCCCC
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDY---KEIISNSSS-IS----AS--SLMITSLS 73 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy---~~i~~~~~~-~~----~~--~~~~~~~s 73 (266)
+++||.+++.+|+||++|.|+|++|+||+.+|.+|+.+.+|+.||-.|+ .+|...+.+ .. +. .....+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~ 84 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD 84 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence 5689999999999999999999999999999999999999999998764 455443332 00 00 00012456
Q ss_pred HHHHHhhhcc
Q 024543 74 KKDLYFYLCH 83 (266)
Q Consensus 74 kKely~~L~~ 83 (266)
++.+|.+=|-
T Consensus 85 ~~~~y~~~~p 94 (312)
T 3l2o_B 85 YMAVYRMCCP 94 (312)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCh
Confidence 8999999883
No 3
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.97 E-value=2.8e-06 Score=78.11 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=46.1
Q ss_pred CccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCC
Q 024543 1 MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLP 49 (266)
Q Consensus 1 ~~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP 49 (266)
+|.+..||++++..|++|++|.|.|++|+||+.|+.+++++.+|++++-
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 4788999999999999999999999999999999999999999998763
No 4
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.81 E-value=9.4e-06 Score=74.43 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=60.6
Q ss_pred cccccchHHHHHHHhcCChhhHH-HhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhh
Q 024543 3 ITFVLPAQCISYIISLTTPRDAS-RLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYL 81 (266)
Q Consensus 3 ~~~~Lpe~cia~ils~t~P~dac-r~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L 81 (266)
.+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|+++|... .+...... + .+..+-|.+|..-
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~----~~~~~Wk~~y~~~ 121 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--D----EERDHWQQFYFLS 121 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----------CCSCHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--C----CCCCChhhhhehe
Confidence 45789999999999999999999 99999999999999999999988765 12111000 0 0235688999875
Q ss_pred ccCCeeecCC
Q 024543 82 CHNPILINNH 91 (266)
Q Consensus 82 ~~~pvlld~g 91 (266)
-..-+||.|.
T Consensus 122 ~~gRNLL~NP 131 (297)
T 2e31_A 122 KRRRNLLRNP 131 (297)
T ss_dssp HHCCCCSSCS
T ss_pred ecccceeecC
Confidence 4445666653
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.73 E-value=6.9e-06 Score=75.52 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=46.9
Q ss_pred CccccccchH----HHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCc
Q 024543 1 MDITFVLPAQ----CISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSD 51 (266)
Q Consensus 1 ~~~~~~Lpe~----cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d 51 (266)
.|++..||++ .+..|++|++|.|.|++|+||+.|+..++++.+|.+++-..
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 3788899999 99999999999999999999999999999999999887544
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.72 E-value=9.1e-06 Score=74.56 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=44.7
Q ss_pred CccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhcc-chhhccCC
Q 024543 1 MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADS-DSVWEKFL 48 (266)
Q Consensus 1 ~~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~s-D~vW~~fl 48 (266)
.|++..||++.+..|++|++|+|.|++++||+.++..+++ +.+|++++
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3778899999999999999999999999999999999987 89998876
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.51 E-value=0.0015 Score=57.77 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF 47 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (266)
..+||++++..|+++++++|.++++.||+.|+.++.+-..|.+.
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 47899999999999999999999999999999998777778653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.23 E-value=0.01 Score=56.42 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=29.4
Q ss_pred ccccccchHHHHHHHhcCC-hhhHHHhhhcChhhHhh
Q 024543 2 DITFVLPAQCISYIISLTT-PRDASRLSLACPAFKST 37 (266)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~-P~dacr~a~vs~~fr~a 37 (266)
|+..+||++++..|++|++ ++|++++|.||+.++.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 7889999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.29 E-value=0.044 Score=52.11 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=31.3
Q ss_pred ccchHHHHHHHhcC-ChhhHHHhhhcChhhHhhh
Q 024543 6 VLPAQCISYIISLT-TPRDASRLSLACPAFKSTA 38 (266)
Q Consensus 6 ~Lpe~cia~ils~t-~P~dacr~a~vs~~fr~aa 38 (266)
+||++++.+|++|+ +++|+++++.||+.|+.+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 79999999999999 8999999999999999873
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=91.15 E-value=5.2 Score=32.34 Aligned_cols=96 Identities=8% Similarity=0.086 Sum_probs=56.8
Q ss_pred cccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCC
Q 024543 155 RILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGD 234 (266)
Q Consensus 155 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~ 234 (266)
..|.||++|.+..-+|+.+.. ....+.+++...+... ..+...+.. -....++|.+++-|.|..+...
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g-~~~y~~i~~--------~~~~~~~W~~L~G~~ft~~~~~ 130 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSG-TQRYDTIDM--------KTVGPNQWVHLYNPQYRIPSDA 130 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTS-CEEEEEEEE--------EEECSSCCEEEEEEEEECCTTC
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCC-CEEEEEEee--------EEEcCCccEEEECcEEEeCCCC
Confidence 468999999999999987642 2223444444322211 111222211 0112578999998899886542
Q ss_pred ccEEEEEEEEecCcccccEEEEEEEEEeccC
Q 024543 235 DGTVVCRLCEPGSVQKRGIITQGIELRPKYG 265 (266)
Q Consensus 235 ~~ev~fsl~e~~~~wK~GLiv~GIeIRPk~~ 265 (266)
..+.+-+ | +..-..=+.|+.|.|.|...
T Consensus 131 -~~~~lyv-e-~~~~~~d~yiDdv~i~~~g~ 158 (160)
T 1dyo_A 131 -TDMYVYV-E-TADDTINFYIDEAIGAVAGT 158 (160)
T ss_dssp -EEEEEEE-E-ESSCCCCEEEEEEEEEETTC
T ss_pred -CEEEEEE-E-CCCCCccEEEEEEEEEeCcc
Confidence 2343322 3 23345558999999998754
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=81.69 E-value=0.49 Score=36.28 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=39.7
Q ss_pred cchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhhcc
Q 024543 7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCH 83 (266)
Q Consensus 7 Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L~~ 83 (266)
.|-+.+.-||-.-+|....++-.-|+.+ .-++|-+|.+++-.||..-- | .+.-|-+++|.+|.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-------p----~e~esWRelY~rl~~ 76 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-------P----EEYESWREMYLRLQD 76 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-------C----CSSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-------C----CCCCCHHHHHHHHHH
Confidence 5777788899999999999999999966 67899999999999988431 1 134689999999975
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=55.99 E-value=79 Score=30.40 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=52.3
Q ss_pred ccccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCC
Q 024543 154 TRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENG 233 (266)
Q Consensus 154 ~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~ 233 (266)
+..|.||++|....-+|. + |=...++.+++...++........++.. -....++|.+++ |.|.....
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~--------~~~~~g~Wt~L~-g~ft~p~~ 143 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIAT--------KDVVAGEWTEIS-AKYKAPKT 143 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEE--------EEEETTCCEEEE-EEEECCTT
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeE--------EEEeCCeeEEEE-eEEEecCC
Confidence 557899999999999985 3 2122345555543211100111111211 011258999999 79987543
Q ss_pred CccEEEEEEEEecCcccccEEEEEEEEEecc
Q 024543 234 DDGTVVCRLCEPGSVQKRGIITQGIELRPKY 264 (266)
Q Consensus 234 ~~~ev~fsl~e~~~~wK~GLiv~GIeIRPk~ 264 (266)
...+++.+ |. .-..-+.|+.|.|.++.
T Consensus 144 -~~~~~lyv-e~--~~~~~f~vDdvsl~~~~ 170 (540)
T 2w5f_A 144 -AVNITLSI-TT--DSTVDFIFDDVTITRKG 170 (540)
T ss_dssp -EEEEEEEE-EE--SSCCCEEEEEEEEEEC-
T ss_pred -CeEEEEEE-Ec--CCCCCEEEEEEEEecCc
Confidence 23444433 33 23456889999887653
No 13
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=34.42 E-value=1.7e+02 Score=23.07 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=47.7
Q ss_pred CCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEc--CCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCcc
Q 024543 159 FKTNYAAYLVFKFVKSRQGFDARPIEFDVYFE--GSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDG 236 (266)
Q Consensus 159 p~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~--g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~ 236 (266)
|+++|.+..-++-.. | + ++.+.+. |+.. .. ..+ |...-..|..+.+-+|.+.. |
T Consensus 70 p~gtYtlsa~v~~~~---~-~----~~yl~~~~~gg~~-~~--~~~----------~~~g~~~w~~~~i~~i~v~~---G 125 (152)
T 2xom_A 70 PAGVYRVGFWTHGEK---G-V----KIALKVSDYGGNE-RS--VEV----------ETTGWLEWKNPEIRNIKVET---G 125 (152)
T ss_dssp CSEEEEEEEEEEEST---T-C----EEEEEEESSSSCC-EE--EEE----------ECCEEEEEECCEEEEEEECS---S
T ss_pred CCCeEEEEEEEEcCC---C-c----eEEEEEecCCCcE-EE--EEc----------cCCCCCcccEEEEeEEEEeC---C
Confidence 666899998888753 3 2 2444443 4443 22 222 11001256778888888754 4
Q ss_pred EEEEEEEEe--cCcccccEEEEEEEEEecc
Q 024543 237 TVVCRLCEP--GSVQKRGIITQGIELRPKY 264 (266)
Q Consensus 237 ev~fsl~e~--~~~wK~GLiv~GIeIRPk~ 264 (266)
.++++++-- .++| +-|+-+++.+.+
T Consensus 126 ~~~Ig~~~~~~~g~W---~~iDd~~L~~~e 152 (152)
T 2xom_A 126 RIKITVSVEGRAGDW---GFIDDFYLFREE 152 (152)
T ss_dssp EEEEEEEEEECTTCE---EEEEEEEEEEC-
T ss_pred eEEEEEEEEcCCCCe---EEEEEEEEEEcC
Confidence 677777543 6677 889999988753
No 14
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=34.24 E-value=1.6e+02 Score=22.65 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=48.2
Q ss_pred ccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCC-cc-ceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCC
Q 024543 156 ILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGS-NN-HKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENG 233 (266)
Q Consensus 156 ~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~-~~-~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~ 233 (266)
.|.+|.+|.+.|..+-... .++.+.+.-.++ .. .....+.+ ..+|-+++. +|.....
T Consensus 68 ~l~~G~~Y~lsf~aka~~~------~~i~v~l~~~~~~~~~~~~~~~~l--------------t~~w~~~~~-~ft~~~~ 126 (155)
T 1gui_A 68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTVNL--------------TADWQTFTF-TYTHPDD 126 (155)
T ss_dssp ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEEEE--------------CSSCEEEEE-EEECCTT
T ss_pred EeCCCCEEEEEEEEEeCCC------CcEEEEEEcCCCChHHheeccEee--------------CCCCEEEEE-EEEcCCC
Confidence 4789999999998887531 234443332221 11 01112222 347999986 7776553
Q ss_pred CccEEEEEEEEecCcccccEEEEEEEEEec
Q 024543 234 DDGTVVCRLCEPGSVQKRGIITQGIELRPK 263 (266)
Q Consensus 234 ~~~ev~fsl~e~~~~wK~GLiv~GIeIRPk 263 (266)
.+....+.+. .++..-+.+.|+-|.+.|.
T Consensus 127 t~~~~~l~f~-~g~~~~~~v~iD~VsL~P~ 155 (155)
T 1gui_A 127 ADEVVQISFE-LGEGTATTIYFDDVTVSPQ 155 (155)
T ss_dssp SCSEEEEEEE-CCSSCCCEEEEEEEEEEEC
T ss_pred CCceEEEEEE-CCCCCCceEEEEEEEEEeC
Confidence 2333333222 2222236699999999984
No 15
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=31.23 E-value=57 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=25.7
Q ss_pred EeccccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCc
Q 024543 152 IETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSN 193 (266)
Q Consensus 152 i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~ 193 (266)
+.-.-|.|+|.|.+.+.-.-.. |- ..|+...+..+|..
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~~~ 94 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGGHH 94 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSSCC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCccc
Confidence 3334589999999876554432 43 47998888876543
No 16
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=23.97 E-value=59 Score=22.78 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=20.2
Q ss_pred EeccccCCCCeEEEEEEEEEcCCcCC-CCCcCEEEE
Q 024543 152 IETRILSFKTNYAAYLVFKFVKSRQG-FDARPIEFD 186 (266)
Q Consensus 152 i~~~~LSp~t~Y~ay~v~kl~d~~~G-w~~~pv~~~ 186 (266)
+.-.-|.|+|.|.+.+.-.-..+ .| ....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G-~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYY-DLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEET-TEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCc-cCCCCCCCEEEe
Confidence 33446999999988766544332 23 234566554
No 17
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.03 E-value=2.2e+02 Score=20.77 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=12.3
Q ss_pred cccCCCCeEEEEEEEE
Q 024543 155 RILSFKTNYAAYLVFK 170 (266)
Q Consensus 155 ~~LSp~t~Y~ay~v~k 170 (266)
.-|.|+|.|...+.-.
T Consensus 83 ~gL~P~T~Y~f~V~A~ 98 (123)
T 2edd_A 83 TGLKPNTMYEFSVMVT 98 (123)
T ss_dssp ESCCTTCEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEe
Confidence 3488999999876544
Done!