BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024544
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3
PE=1 SV=2
Length = 347
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/259 (77%), Positives = 232/259 (89%)
Query: 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68
Query: 68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
GANIIITASYQATIQGF AKG S EAE LLRRSVEI EAREI+Y+RC K SWDF +G
Sbjct: 69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128
Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
+ S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188
Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
ETIPNKLEA+AYA+LLEEE I IPAWFSF SKDG++V GDS++ECA +ADSC+ VVA+G
Sbjct: 189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248
Query: 248 INCTSPRFIHGLILSVRKV 266
INCT+PR+IH LI+S+R++
Sbjct: 249 INCTAPRYIHALIISLRQM 267
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2
PE=1 SV=1
Length = 333
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/255 (72%), Positives = 217/255 (85%), Gaps = 2/255 (0%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
M DFL++ GGY+V+DGG ATE ERHGADLNDPLWSAKCLV+SPHL+ VHLDYL+AGA+I
Sbjct: 9 MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
I +ASYQATIQGFEAKGFS EE+E+LL++SVEIA EAR YYD+C S +
Sbjct: 69 ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSS--SMDDKILKK 126
Query: 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP 191
RP+LVAASVGSYGAYLADGSEYSG YGD+++LE LK+FHRRR+ +LA SGADLIAFETIP
Sbjct: 127 RPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIP 186
Query: 192 NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251
NK+EA+A+A+LLEE + IP WFSFNSKDG+NVVSGDSI EC SIA++CE+VVAVGINCT
Sbjct: 187 NKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCT 246
Query: 252 SPRFIHGLILSVRKV 266
PRFI GL+L + KV
Sbjct: 247 PPRFIEGLVLEIEKV 261
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA
PE=1 SV=1
Length = 338
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/260 (70%), Positives = 218/260 (83%), Gaps = 1/260 (0%)
Query: 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
++ +TDFL + G +V+ GG TEL+RHGADLNDPLWSAKCL+S PHL+R+VHLDYL+
Sbjct: 2 SSPLITDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLEN 61
Query: 68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
GA+IIITASYQATIQGF+AKGFS EE EALLRRSVEIA EAR++YY RC + S D
Sbjct: 62 GADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDS 121
Query: 128 RI-SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIA 186
RI RP+L+A SVGSYGAYLADGSE+SG+YGDA+ ETLK+FHRR+V ILA+SG DL+A
Sbjct: 122 RILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLA 181
Query: 187 FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246
FE +PNKLEA+AYA+LLEEE I PAWF+F SKDG NVVSGDSI EC SIA+SC++VVAV
Sbjct: 182 FEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAV 241
Query: 247 GINCTSPRFIHGLILSVRKV 266
GINCT PRFIH LIL ++KV
Sbjct: 242 GINCTPPRFIHDLILLLKKV 261
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var.
italica GN=SMT PE=1 SV=1
Length = 346
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 224/268 (83%), Gaps = 6/268 (2%)
Query: 1 MVSGSNGTTSF--MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVR 58
MV+G+ +F M + L++ GGY+++DGG ATELERHGADLNDPLWSAKCL++SPHL+
Sbjct: 1 MVTGNTKAETFYSMKELLKETGGYAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLIH 60
Query: 59 KVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMK 118
VHLDYL+AGA+II +ASYQATIQGFEAKG+S E++E+LLR+SVEIACEAR YYD+C
Sbjct: 61 TVHLDYLEAGADIISSASYQATIQGFEAKGYSIEKSESLLRKSVEIACEARSTYYDKCKD 120
Query: 119 DSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILA 178
D + RP+LVAASVGSYGA+LADGSEYSG YGD ++LETLK+FHRRRV +LA
Sbjct: 121 DD----DKKILKKRPILVAASVGSYGAFLADGSEYSGIYGDLITLETLKDFHRRRVQVLA 176
Query: 179 NSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238
SGAD+IAFETIPNKLEA+A+AELL+E IP WFSFNSKDG+NVVSGDSI EC +IA+
Sbjct: 177 ESGADIIAFETIPNKLEAQAFAELLDEGVAKIPGWFSFNSKDGVNVVSGDSIKECIAIAE 236
Query: 239 SCEQVVAVGINCTSPRFIHGLILSVRKV 266
+CE+VVAVGINCT PRFI GL+L + KV
Sbjct: 237 ACEKVVAVGINCTPPRFIEGLVLEIAKV 264
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1
Length = 339
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/266 (66%), Positives = 214/266 (80%), Gaps = 7/266 (2%)
Query: 1 MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
+V+ + + ++ GG V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKV
Sbjct: 2 VVTAAGSAEEAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKV 61
Query: 61 HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
H+DYL+AGANIIITASYQATIQGFE+KGFS E++E LL +SVEIA EARE++ ++ S
Sbjct: 62 HMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKS 121
Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
PVLVAAS+GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +
Sbjct: 122 TPI-------QHPVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEA 174
Query: 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240
G DLIAFETIPNKLEA+AY ELLEE I IPAWFSFNSKDG+++VSGDS++EC +IAD C
Sbjct: 175 GPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKC 234
Query: 241 EQVVAVGINCTSPRFIHGLILSVRKV 266
+V AVGINCT PRFIHGLILS+RKV
Sbjct: 235 AKVGAVGINCTPPRFIHGLILSIRKV 260
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1
Length = 338
Score = 360 bits (923), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 175/264 (66%), Positives = 212/264 (80%), Gaps = 7/264 (2%)
Query: 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHL 62
+ G + ++ GG V+DGG ATELE +GADLNDPLWSAKCL+SSPHL+RKVH+
Sbjct: 4 TAEGGAERAVRRWVDAAGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHM 63
Query: 63 DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWD 122
DYL+AGANIIITASYQATIQGFE+KGFS E++E LL +SV+IA EARE++ ++ S
Sbjct: 64 DYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTP 123
Query: 123 FTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGA 182
P+LVAA++GSYGAYLADGSEYSGDYG+A + E LK+FHRRR+ +LA +G
Sbjct: 124 I-------QHPILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGP 176
Query: 183 DLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQ 242
DLIAFETIPNKLEA+AY ELLEE I IP+W SFNSKDG++VVSGDS++ECA+IAD C +
Sbjct: 177 DLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAK 236
Query: 243 VVAVGINCTSPRFIHGLILSVRKV 266
V AVGINCT PRFIHGLILS+RKV
Sbjct: 237 VGAVGINCTPPRFIHGLILSIRKV 260
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1
Length = 342
Score = 351 bits (900), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/259 (66%), Positives = 206/259 (79%), Gaps = 15/259 (5%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
+ F+++ GG +VVDGG TELE HGADL+D LWSAKCL S+PHL+RKVHLDYL+AGA++
Sbjct: 14 LRGFVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADV 73
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
II+ASYQATI+GF+++GFS +E+E LLRRSV +A EAR + F G SS
Sbjct: 74 IISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRV-----------FAAEGDRSS 122
Query: 132 R----PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
R P LVAASVGSYGAY ADGSEYSGDYG +++ E LK FHRRR+ +LA +G DLIAF
Sbjct: 123 RRGRPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAF 182
Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
ETIPNKLEA+ YAELLEE GI IPAWFSF SKDG+N SGD I ECA++ADSC +V AVG
Sbjct: 183 ETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVG 242
Query: 248 INCTSPRFIHGLILSVRKV 266
+NCT+PRFIHGLILS++KV
Sbjct: 243 VNCTAPRFIHGLILSIKKV 261
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var.
italica GN=HMT1 PE=1 SV=1
Length = 326
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 190/263 (72%), Gaps = 7/263 (2%)
Query: 4 GSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLD 63
G ++ + D ++KCGG +VVDGGFAT+LE HGA +NDPLWSA L+ P L+++VH++
Sbjct: 2 GLEKKSALLEDLIEKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKDPELIKRVHME 61
Query: 64 YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDF 123
YL+AGA++++T+SYQATI GF ++G S EE+E+LL++SV++A EAR+ ++D+ K S
Sbjct: 62 YLEAGADVVVTSSYQATIPGFLSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKTS--- 118
Query: 124 TGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGAD 183
G +R LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FHRRR+ +L + D
Sbjct: 119 ---GHSYNR-ALVAASIGSYGAYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPD 174
Query: 184 LIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243
L+AFETIPNKLEA+A ELLEEE + IPAW F S DG N SG+S EC + +
Sbjct: 175 LLAFETIPNKLEAQACVELLEEENVQIPAWICFTSVDGENAPSGESFQECLETLNKSNNI 234
Query: 244 VAVGINCTSPRFIHGLILSVRKV 266
AVGINC P+F+ LI K+
Sbjct: 235 CAVGINCAPPQFMDNLIRKFSKL 257
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1
Length = 323
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/258 (54%), Positives = 190/258 (73%), Gaps = 15/258 (5%)
Query: 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANI 71
+ D + + GG +V+DGGFAT+LE GAD+NDPLWSA CL++ PHLV++VH+ YL+AGA++
Sbjct: 4 LEDLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADV 63
Query: 72 IITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131
II++SYQATI GF A+G S EAE LLR SV++A EAR+ ++ ++ S
Sbjct: 64 IISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWKSTLR-----------KS 112
Query: 132 RPV----LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
+P+ LVAAS+GSYGAYLADGSEYSG YG ++ E LK+FHRRR+ +LA++G DLIAF
Sbjct: 113 KPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAF 172
Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
E IPN++EA+A ELLEEE + IP+W F+S DG N+ SG+S +C I ++ E+V VG
Sbjct: 173 EAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVG 232
Query: 248 INCTSPRFIHGLILSVRK 265
+NCT P+FI G+I RK
Sbjct: 233 VNCTPPQFIEGIICEFRK 250
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1
PE=1 SV=1
Length = 326
Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/258 (55%), Positives = 190/258 (73%), Gaps = 7/258 (2%)
Query: 9 TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAG 68
++ + D ++KCGG +VVDGGFAT+LE HGA +NDPLWSA L+ +P L+++VH++YL+AG
Sbjct: 7 SALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAG 66
Query: 69 ANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128
A+I++T+SYQATI GF ++G S EE+E+LL++SVE+A EAR+ ++++ K SG
Sbjct: 67 ADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSK------VSGH 120
Query: 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE 188
+R LVAAS+GSYGAYLADGSEYSG YG+ VSL+ LK+FHRRR+ +L +G DL+AFE
Sbjct: 121 SYNR-ALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFE 179
Query: 189 TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248
TIPNKLEA+A ELLEEE + IPAW F S DG SG+S EC + + AVGI
Sbjct: 180 TIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGI 239
Query: 249 NCTSPRFIHGLILSVRKV 266
NC P+FI LI K+
Sbjct: 240 NCAPPQFIENLIRKFAKL 257
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain
168) GN=ybgG PE=4 SV=1
Length = 315
Score = 211 bits (536), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 154/242 (63%), Gaps = 12/242 (4%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
V+DG ATELER G +LND LWSAK L+ P L+++VH DY AGA+ ITASYQ+T +G
Sbjct: 15 VLDGAMATELERKGCNLNDSLWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTFEG 74
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
F A+G S EA L+ SV IA EAR+ + W R++ ++AAS+G Y
Sbjct: 75 FAARGLSEAEARRLIELSVSIAAEARDEF--------WSLE-ENRLNRPKPIIAASIGPY 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
GAYLADGSEY G+Y A+S + L EFHR R+ L +GAD++A ETIP EAKA LL
Sbjct: 126 GAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLL 183
Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV 263
+E T AW SF++KDG+++ G +CAS D Q+ A+GINCT + I LI +
Sbjct: 184 KEFPETY-AWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEEL 242
Query: 264 RK 265
+K
Sbjct: 243 KK 244
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12)
GN=mmuM PE=1 SV=2
Length = 310
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 148/248 (59%), Gaps = 28/248 (11%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
++DG ATELE G +L D LWSAK LV +P L+R+VHLDY AGA ITASYQAT G
Sbjct: 18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAG 77
Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
F A+G +++AL+ +SVE+A +ARE Y + + +LVA SVG Y
Sbjct: 78 FAARGLDEAQSKALIGKSVELARKAREAYL------------AENPQAGTLLVAGSVGPY 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
GAYLADGSEY GDY S+E + FHR RV L ++GADL+A ET+PN E +A AELL
Sbjct: 126 GAYLADGSEYRGDYH--CSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELL 183
Query: 204 EEEGITIP---AWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-------TSP 253
P AWFSF +D ++ G + + ++ QVVA+GINC +
Sbjct: 184 ----TAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAAL 239
Query: 254 RFIHGLIL 261
+ +HGL +
Sbjct: 240 QHLHGLTV 247
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MHT1 PE=1 SV=1
Length = 324
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 37/252 (14%)
Query: 16 LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSP---------HLVRKVHLDYLD 66
++ G ++DGG TELE G ++N P+WSA S +V +++ D++
Sbjct: 11 VEHPGKVLILDGGQGTELENRGININSPVWSAAPFTSESFWEPSSQERKVVEEMYRDFMI 70
Query: 67 AGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGS 126
AGANI++T +YQA Q ++ S + A R + D+ + + +F G
Sbjct: 71 AGANILMTITYQANFQSI-SENTSIKTLAAYKR------------FLDKIVSFTREFIGE 117
Query: 127 GRISSRPVLVAASVGSYGAYLADGSEYSGDYGD-AVSLETLKEFHRRRVLILANSGADLI 185
R + S+G + A+++ EY+GDYG +++ F + N DLI
Sbjct: 118 ER------YLIGSIGPWAAHVS--CEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLI 169
Query: 186 AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC----- 240
FETIPN E KA +E+ I+ P + + D + G ++ E +
Sbjct: 170 GFETIPNFHELKAILS-WDEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKIN 228
Query: 241 EQVVAVGINCTS 252
+ ++ +G+NC S
Sbjct: 229 KNLLLMGVNCVS 240
>sp|Q08985|SAM4_YEAST Homocysteine S-methyltransferase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAM4 PE=1 SV=1
Length = 325
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 46/249 (18%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVS----------SPHLVRKVHLDYLDAGANIII 73
V+DGG TELE G + +P+WS +S + +V+++ D+L+AGA I++
Sbjct: 19 VLDGGQGTELENRGIKVANPVWSTIPFISESFWSDESSANRKIVKEMFNDFLNAGAEILM 78
Query: 74 TASYQATIQGF-EAKGFST-EEAEALLRRSVEIA--CEAREIYYDRCMKDSWDFTGSGRI 129
T +YQ + + E T E LL R V+ + C + Y C
Sbjct: 79 TTTYQTSYKSVSENTPIRTLSEYNNLLNRIVDFSRNCIGEDKYLIGC------------- 125
Query: 130 SSRPVLVAASVGSYGAYLADGSEYSGDYG-DAVSLETLKEFHRRRVLILANSGADLIAFE 188
+G +GA++ E++GDYG + +++ + F + N DLI FE
Sbjct: 126 ----------IGPWGAHIC--REFTGDYGAEPENIDFYQYFKPQLENFNKNDKLDLIGFE 173
Query: 189 TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS-IADSCEQVVA-- 245
TIPN E KA +E ++ P + + + + G ++ E A I D +++
Sbjct: 174 TIPNIHELKAILS-WDESILSRPFYIGLSVHEHGVLRDGTTMEEIAQVIKDLGDKINPNF 232
Query: 246 --VGINCTS 252
+GINC S
Sbjct: 233 SFLGINCVS 241
>sp|Q5XGM3|BHMT1_XENLA Betaine--homocysteine S-methyltransferase 1 OS=Xenopus laevis
GN=bhmt PE=2 SV=1
Length = 403
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 39/228 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AGAN++ T ++ A+ E
Sbjct: 23 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLE 81
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E+AC+ ARE+ + LVA V
Sbjct: 82 NRGNYV--AEKISGQKVNEVACDIAREV-----------------ANEGDALVAGGVSQT 122
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE +K R+++ + D + E + EA E+L
Sbjct: 123 PSYLSCKSEVE-----------VKGIFRKQLDVFIKKNVDFLIAEYFEHVEEAVWAVEVL 171
Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECA-SIADSCEQVVAVGINC 250
+E G + A + +N VS ECA +A + V VG+NC
Sbjct: 172 KESGKPVAATLCIGPEGDLNGVSPG---ECAVRLAKAGASV--VGVNC 214
>sp|Q9AJQ8|METH_VIBFI Methionine synthase OS=Vibrio fischeri GN=metH PE=3 SV=1
Length = 1226
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 18/205 (8%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++R +H YL+AGA+I+ T ++ AT + + E+L S EI EA
Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT-----TIAMADYDMESL---SEEINFEAA 110
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ R + D W + + ++P VA +G + + + VS + L E
Sbjct: 111 KLA--REVADKW----TEKTPNKPRYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEA 164
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVV 225
+ L G+DLI ETI + L AK A + EE GIT+P S D
Sbjct: 165 YSESTRALIRGGSDLILIETIFDTLNAKACSFAVESVFEELGITLPVMISGTITDASGRT 224
Query: 226 SGDSILECASIADSCEQVVAVGINC 250
E A + ++ G+NC
Sbjct: 225 LSGQTTEAFYNALRHVKPISFGLNC 249
>sp|Q87L95|METH_VIBPA Methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=metH PE=3 SV=1
Length = 1226
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
++S P L++++H YL+AGA+I+ T ++ AT + +E + S E A + + E+A
Sbjct: 58 VLSQPQLIKEIHSAYLEAGADILETNTFNATTIAMADYEMESLSEEINFAAAKLAREVA- 116
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
D W + + +P VA +G + + + VS + L
Sbjct: 117 ------------DEW----TAKTPDKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYA----ELLEEEGITIPAWFS 215
E + L GADLI ETI + L AKA A + EE G+ +P S
Sbjct: 161 VEAYSESTRALIRGGADLILIETIFDTLNAKACAFAVDSVFEELGVALPVMIS 213
>sp|Q5E814|METH_VIBF1 Methionine synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=metH PE=3 SV=1
Length = 1226
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++R +H YL+AGA+I+ T ++ AT + + E+L S EI EA
Sbjct: 59 VLSQPQIIRDIHEAYLEAGADILETNTFNAT-----TIAMADYDMESL---SEEINFEAA 110
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ R + D W + + ++P VA +G + + + VS + L E
Sbjct: 111 KLA--REVADKW----TEKTPNKPRYVAGVLGPTNRTCSISPDVNDPGFRNVSFDELVEA 164
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVV 225
+ L G+DLI ETI + L AK A + EE IT+P S D
Sbjct: 165 YSESTRALIRGGSDLILIETIFDTLNAKACSFAVESVFEELDITLPVMISGTITDASGRT 224
Query: 226 SGDSILECASIADSCEQVVAVGINC 250
E A + ++ G+NC
Sbjct: 225 LSGQTTEAFYNALRHVKPISFGLNC 249
>sp|Q5M8Z0|BHMT1_XENTR Betaine--homocysteine S-methyltransferase 1 OS=Xenopus tropicalis
GN=bhmt PE=2 SV=1
Length = 403
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 39/228 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AGAN++ T ++ A+ E
Sbjct: 23 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGANVMQTFTFYASDDKLE 81
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G A+ + + V E AC+ ARE+ + LVA V
Sbjct: 82 NRGNYV--AKKISGQKVNEAACDIAREV-----------------ANEGDALVAGGVSQT 122
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE +K R+++ + D + E + EA E+L
Sbjct: 123 PSYLSCKSEVE-----------VKGIFRKQLDVFIKKNVDFLIAEYFEHVEEAVWAVEVL 171
Query: 204 EEEGITIPAWFSFNSKDGIN-VVSGDSILECASIADSCEQVVAVGINC 250
+E G + A + +N V G+ + A S VG+NC
Sbjct: 172 KESGKPVAATLCIGPQGDLNGVTPGECAVRLAKAGAS-----VVGVNC 214
>sp|P87138|YDM7_SCHPO Uncharacterized protein C57A7.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A7.07c PE=4 SV=2
Length = 308
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 24 VVDGGFATELERHGADLNDP-LWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQ--AT 80
++DGG L + +++ LW+++ LV P +V K H ++L +II T +YQ A+
Sbjct: 3 MLDGGSTAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQLDAS 61
Query: 81 IQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASV 140
I + +G ++ A S+ + ARE + +A +
Sbjct: 62 IYDEKVEGVPLKQVYA---NSIGLPVYARE-----------------HLGLPNKYIALCL 101
Query: 141 GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGA------DLIAFETIPNKL 194
GS+ A + EY Y E L FH+ R+ + S D IAFE++P+
Sbjct: 102 GSHAATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLPHVT 161
Query: 195 EAKAYAELLEE 205
EA+ +L+++
Sbjct: 162 EAEVVCQLIQD 172
>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metH PE=3 SV=1
Length = 1226
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P +++++H YL+AGA+I+ T ++ +T + ++ + S E A + + E+A
Sbjct: 58 VLTQPQIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSAEINFAAAKLAREVA- 116
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
D W + + SRP VA +G + + + V+ + L
Sbjct: 117 ------------DEW----TAKDPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYA----ELLEEEGITIPAWFSFNSKDGI 222
E + L G+DLI ETI + L AKA A + EE GI++P S D
Sbjct: 161 VEAYSESTRALIKGGSDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISGTITDAS 220
Query: 223 NVVSGDSILECASIADSCEQVVAVGINC 250
E A + ++ G+NC
Sbjct: 221 GRTLSGQTTEAFYNALRHVRPISFGLNC 248
>sp|O09171|BHMT1_RAT Betaine--homocysteine S-methyltransferase 1 OS=Rattus norvegicus
GN=Bhmt PE=1 SV=1
Length = 407
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E AC+ AR++ D D LVA V
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGD-----------ALVAGGVSQT 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE E K FH +++ + D + E + EA E L
Sbjct: 126 PSYLSCKSE----------TEVKKIFH-QQLEVFMKKNVDFLIAEYFEHVEEAVWAVEAL 174
Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250
+ G I A + ++ VS ECA + VG+NC
Sbjct: 175 KTSGKPIAATMCIGPEGDLHGVSPG---ECAVRLVKAGAAI-VGVNC 217
>sp|Q95332|BHMT1_PIG Betaine--homocysteine S-methyltransferase 1 (Fragment) OS=Sus
scrofa GN=BHMT PE=1 SV=3
Length = 278
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 39/228 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E AC+ AR++ D D LVA V
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGD-----------ALVAGGVSQT 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE +K+ R+++ + D + E + EA E L
Sbjct: 126 PSYLSCKSETE-----------VKKVFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEAL 174
Query: 204 EEEGITIPAWFSFNSKDGIN-VVSGDSILECASIADSCEQVVAVGINC 250
+ G + A + ++ V G + S VG+NC
Sbjct: 175 KASGKPVAATMCIGPEGDLHGVTPGQCAVRLVKAGASI-----VGVNC 217
>sp|O35490|BHMT1_MOUSE Betaine--homocysteine S-methyltransferase 1 OS=Mus musculus GN=Bhmt
PE=2 SV=1
Length = 407
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E AC+ AR++ D D LVA V
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGD-----------ALVAGGVSQT 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE +K+ R+++ + D + E + EA E L
Sbjct: 126 PSYLSCKSEVE-----------VKKIFRQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEAL 174
Query: 204 EEEGITIPAWFSFNSKDGIN-VVSGDSILECASIADSCEQVVAVGINC 250
+ G + A + ++ V G+ + S VG+NC
Sbjct: 175 KASGKPVAATMCIGPEGDLHGVPPGECAVRLVKAGASI-----VGVNC 217
>sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE=2 SV=1
Length = 1265
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 34/245 (13%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++RH G + D PL ++S P+++ ++H +YL AGA+
Sbjct: 32 VLDGGMGTMIQRHKLSEEDFRGQEFKDHARPLKGNNDILSITQPNVIYQIHKEYLLAGAD 91
Query: 71 IIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130
II T ++ +T G R ++ A AR+ D ++ TG R
Sbjct: 92 IIETNTFSSTSIAQADYGLE----HLAYRMNMCSAGVARKAAEDISLQ-----TGIKR-- 140
Query: 131 SRPVLVAASVGSYGAYLA-DGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET 189
VA ++G L+ S DY + ++ + L E ++ + L + G D++ ET
Sbjct: 141 ----YVAGALGPTNKTLSVSPSVERPDYRN-ITFDELVEAYKEQAKGLLDGGVDILLIET 195
Query: 190 IPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA 245
I + AK A +L EEE + P + S D E I+ S +
Sbjct: 196 IFDTANAKAALFAVQKLFEEEYVPRPVFISGTIVDKSGRTLSGQTGEAFVISVSHADPLC 255
Query: 246 VGINC 250
+G+NC
Sbjct: 256 IGLNC 260
>sp|Q5I597|BHMT1_BOVIN Betaine--homocysteine S-methyltransferase 1 OS=Bos taurus GN=BHMT
PE=2 SV=1
Length = 407
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
+G AE + + V E AC+ AR++ D D LVA V
Sbjct: 85 NRGNYV--AEKISGQKVNEAACDIARQV------ADEGD-----------ALVAGGVSQT 125
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
+YL+ SE +K+ ++++ + D + E + EA E L
Sbjct: 126 PSYLSCKSETE-----------VKKVFQQQLEVFVKKNVDFLIAEYFEHVEEAVWAVEAL 174
Query: 204 EEEGITIPAWFSFNSKDGIN-VVSGDSILECASIADSCEQVVAVGINC 250
+ G + A + ++ V G+ + S VG+NC
Sbjct: 175 KASGKPVAATMCIGPEGDLHSVTPGECAVRLVKAGASI-----VGVNC 217
>sp|Q54P92|METH_DICDI Methionine synthase OS=Dictyostelium discoideum GN=mtr PE=3 SV=1
Length = 1260
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 29/196 (14%)
Query: 24 VVDGGFATELERHGADLND-----------PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DG TE+++ ND L L+S PH++R++H YL+AGA+
Sbjct: 26 VLDGAMGTEIQKFKLKDNDYRGEEFKDFPHELGGNNDLLSLTQPHIIREIHCKYLEAGAD 85
Query: 71 IIITASYQATIQGFEAKGFSTEEAEALLRR-SVEIACEAREIYYDRCMKDSWDFTGSGRI 129
I T ++ I F + E L++R ++E A A+ + KD
Sbjct: 86 FIETNTFNGNI--FSQADYKMEH---LVKRINIESARLAKSACEEYTKKD---------- 130
Query: 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET 189
SRP V +VG + V + L + +V L G D+I ET
Sbjct: 131 PSRPRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQVEALVEGGIDVILVET 190
Query: 190 IPNKLEAKAYAELLEE 205
+ + L KA +EE
Sbjct: 191 VFDSLNCKAALFAIEE 206
>sp|Q9H2M3|BHMT2_HUMAN S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Homo
sapiens GN=BHMT2 PE=1 SV=1
Length = 363
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 3 SGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHL 62
+G G + + L+ G + DG F LE+ G + LW+ + ++ P VR++H+
Sbjct: 4 AGRPGAKKGILERLES-GEVVIGDGSFLITLEKRGY-VKAGLWTPEAVIEHPDAVRQLHM 61
Query: 63 DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSV 102
++L AG+N++ T ++ A+ E+K A L R V
Sbjct: 62 EFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREV 101
>sp|Q32LQ4|BHMT1_DANRE Betaine--homocysteine S-methyltransferase 1 OS=Danio rerio GN=bhmt
PE=2 SV=1
Length = 400
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 39/227 (17%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 23 DGGFVFALEKRGYVKAGP-WTPEAAAEHPEAVRQLHREFLRAGSNVMQTFTFYASDDKLE 81
Query: 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYG- 144
+G + FTG +I+ +A V + G
Sbjct: 82 NRG------------------------------NKLSFTGQ-QINEAACDLAREVANEGD 110
Query: 145 AYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLE 204
A +A G + Y S E +K+ ++++ + DL+ E + EA+ ++L+
Sbjct: 111 ALVAGGVSQTPSYLSCKSEEEVKKTFKKQLDVFIKKNVDLLIAEYFEHVEEAEWAVQVLK 170
Query: 205 EEGITIPAWFSFNSK-DGINVVSGDSILECASIADSCEQVVAVGINC 250
G + A D V+ G+ + VG+NC
Sbjct: 171 ATGKPVAATLCIGPDGDMHGVIPGECAVRLVKAGADI-----VGVNC 212
>sp|Q5RF32|BHMT2_PONAB S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Pongo
abelii GN=BHMT2 PE=2 SV=1
Length = 363
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DG F LE+ G + LW+ + ++ P VR++H+++L AG+N++ T ++ A+ E
Sbjct: 26 DGSFLITLEKRGY-VKAGLWTPEAVIEHPDAVRQLHMEFLRAGSNVMQTFTFSASEDNME 84
Query: 86 AKGFSTEEAEALLRRSV 102
+K A L R V
Sbjct: 85 SKWEDVNAAACDLAREV 101
>sp|Q7MHB1|METH_VIBVY Methionine synthase OS=Vibrio vulnificus (strain YJ016) GN=metH
PE=3 SV=1
Length = 1226
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 30/211 (14%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P L++++H YL+AGA+I+ T ++ AT + ++ + S E
Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAMADYDMESLSEE-------------I 104
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
R D W + + ++P VA +G + + + VS + L
Sbjct: 105 NFAAAKLAREAADEW----TAKNPAKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYA----ELLEEEGITIPAWFSFNSKDGI 222
E + L G+DLI ETI + L AKA A + EE G +P S D
Sbjct: 161 VEAYSESTRALIRGGSDLILIETIFDTLNAKACAFAVESVFEELGFALPVMISGTITDAS 220
Query: 223 -NVVSGDSILECASIADSCEQV--VAVGINC 250
+SG + + +S V ++ G+NC
Sbjct: 221 GRTLSGQT---TEAFYNSLRHVRPISFGLNC 248
>sp|Q93088|BHMT1_HUMAN Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens
GN=BHMT PE=1 SV=2
Length = 406
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKG 88
+G
Sbjct: 85 NRG 87
>sp|Q5RFG2|BHMT1_PONAB Betaine--homocysteine S-methyltransferase 1 OS=Pongo abelii
GN=BHMT PE=2 SV=1
Length = 406
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
DGGF LE+ G P W+ + V P VR++H ++L AG+N++ T ++ A+ E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKG 88
+G
Sbjct: 85 NRG 87
>sp|Q8DCJ7|METH_VIBVU Methionine synthase OS=Vibrio vulnificus (strain CMCP6) GN=metH
PE=3 SV=1
Length = 1226
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 30/211 (14%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQAT---IQGFEAKGFSTEEAEALLRRSVEIAC 106
+++ P L++++H YL+AGA+I+ T ++ AT + ++ + S E
Sbjct: 58 VLTQPQLIKEIHHAYLEAGADILETNTFNATTIAMADYDMESLSEE-------------I 104
Query: 107 EAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166
R D W + + ++P VA +G + + + VS + L
Sbjct: 105 NFAAARLAREAADEW----TAQNPAKPRYVAGVLGPTNRTCSISPDVNDPGYRNVSFDEL 160
Query: 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYA----ELLEEEGITIPAWFSFNSKDGI 222
E + L G+DLI ETI + L AKA A + EE G +P S D
Sbjct: 161 VEAYSESTRALIRGGSDLILIETIFDTLNAKACAFAVDSVFEELGFALPVMISGTITDAS 220
Query: 223 -NVVSGDSILECASIADSCEQV--VAVGINC 250
+SG + + +S V ++ G+NC
Sbjct: 221 GRTLSGQT---TEAFYNSLRHVRPISFGLNC 248
>sp|Q68FT5|BHMT2_RAT S-methylmethionine--homocysteine S-methyltransferase BHMT2
OS=Rattus norvegicus GN=Bhmt2 PE=2 SV=1
Length = 363
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
V DGGF LE+ G + LW+ + +V P VR++H ++L AGA+++ T ++ A
Sbjct: 24 VGDGGFLFTLEKRGF-VKAGLWTPEAVVEYPSAVRQLHTEFLRAGADVLQTFTFSAAEDR 82
Query: 84 FEAK 87
E+K
Sbjct: 83 MESK 86
>sp|O33465|METH_PSEPU Methionine synthase (Fragment) OS=Pseudomonas putida GN=metH PE=3
SV=1
Length = 607
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 35/246 (14%)
Query: 24 VVDGGFAT-----ELERH---GADLNDPLWSAKC-------LVSSPHLVRKVHLDYLDAG 68
++DGG T LE H G D W + L+S P ++ + YLDAG
Sbjct: 21 ILDGGMGTMIQSYRLEEHDYRGTRFAD--WPSDVKGNNDLLLLSRPDVIAAIEKAYLDAG 78
Query: 69 ANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128
A+I+ T ++ AT G + + +VE A AR++ + ++
Sbjct: 79 ADILETNTFNATQISQADYGMES----LVYELNVEGARIARQVADAKTLE---------- 124
Query: 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE 188
+P VA +G + + + V+ + L E + L GADLI E
Sbjct: 125 TPDKPRFVAGVLGPTSRTCSISPDVNDPGYRNVTFDELVENYIEATRGLIEGGADLILIE 184
Query: 189 TIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV 244
TI + L AK A ++ EE+ + +P S D E + + +
Sbjct: 185 TIFDTLNAKAAIFAVQQVFEEDAVELPIMISGTITDASGRTLSGQTTEAFWNSVRHAKPI 244
Query: 245 AVGINC 250
+VG+NC
Sbjct: 245 SVGLNC 250
>sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=metH PE=3 SV=1
Length = 1234
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 18/205 (8%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
L+S P +++ + YLDAGA+I+ T ++ AT G + E +VE A AR
Sbjct: 64 LLSRPDVIQAIEKAYLDAGADILETNTFNATQVSQADYGMQSLAYEL----NVEGARLAR 119
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ + + +P VA +G + + + V+ + L E
Sbjct: 120 QVADAK----------TAETPDKPRFVAGVLGPTSRTCSISPDVNNPGYRNVTFDELVEN 169
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVV 225
+ L GADLI ETI + L AK A + EE G+ +P S D
Sbjct: 170 YVEATRGLIEGGADLILIETIFDTLNAKAAIFAVQGVFEELGVELPIMISGTITDASGRT 229
Query: 226 SGDSILECASIADSCEQVVAVGINC 250
E + + ++VG+NC
Sbjct: 230 LSGQTTEAFWNSVRHARPISVGLNC 254
>sp|Q91WS4|BHMT2_MOUSE S-methylmethionine--homocysteine S-methyltransferase BHMT2 OS=Mus
musculus GN=Bhmt2 PE=1 SV=2
Length = 363
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 7 GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
G+T L++ VV D GF LE+ G + LW+ + +V P VR++H ++
Sbjct: 5 GSTRAKKGILERLDSGEVVVGDSGFLFTLEKRGF-VKAGLWTPEAVVEHPSAVRQLHTEF 63
Query: 65 LDAGANIIITASYQATIQGFEAK 87
L AGA+++ T ++ AT +K
Sbjct: 64 LRAGADVLQTFTFSATEDNMASK 86
>sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=metH PE=3 SV=3
Length = 1227
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 18/205 (8%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++ +H Y +AGA+II T ++ +T + E+L S EI A
Sbjct: 57 VLSKPEVIAAIHNAYFEAGADIIETNTFNST-----TIAMADYRMESL---SAEINYAAA 108
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ D W + R +P VA +G + + + ++ + L
Sbjct: 109 KLAR--ACADEW----TARTPEKPRFVAGVLGPTNRTASISPDVNDPAFRNITFDQLVAA 162
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKDGINVV 225
+R L GADLI ET+ + L AKA ++EE G+ +P S D
Sbjct: 163 YRESTKALVEGGADLILIETVFDTLNAKAAVFAVKEEFEALGVDLPIMISGTITDASGRT 222
Query: 226 SGDSILECASIADSCEQVVAVGINC 250
E + + + G+NC
Sbjct: 223 LSGQTTEAFYNSLRHAEALTFGLNC 247
>sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (strain K12) GN=metH PE=1
SV=5
Length = 1227
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 18/205 (8%)
Query: 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAR 109
++S P ++ +H Y +AGA+II T ++ +T + + E+L S EI A
Sbjct: 57 VLSKPEVIAAIHNAYFEAGADIIETNTFNST-----TIAMADYQMESL---SAEINFAAA 108
Query: 110 EIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF 169
++ D W + R +P VA +G + + + ++ + L
Sbjct: 109 KLAR--ACADEW----TARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAA 162
Query: 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKDGINVV 225
+R L GADLI ET+ + L AKA ++ E G+ +P S D
Sbjct: 163 YRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRT 222
Query: 226 SGDSILECASIADSCEQVVAVGINC 250
E + + + G+NC
Sbjct: 223 LSGQTTEAFYNSLRHAEALTFGLNC 247
>sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=Mtr PE=2 SV=1
Length = 1253
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R+ G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 19 VLDGGMGTMIQRYKLSEENFQGQEFKDHSRPLKGNNDILSITQPDVIYQIHKEYLLAGAD 78
Query: 71 IIITASYQATI-----QGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTG 125
II T ++ +T G E + + A + R A EI TG
Sbjct: 79 IIETNTFSSTSIAQADYGLEHLAYRMNKCSADVARKA-----AEEITLQ---------TG 124
Query: 126 SGRISSRPVLVAASVGSYGAYLA-DGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADL 184
R VA S+G L+ S DY + ++ + L E ++ + L + G D+
Sbjct: 125 VKR------FVAGSLGPTNKTLSVSPSVERPDYRN-ITFDELVEAYQEQAKGLLDGGVDI 177
Query: 185 IAFETIPNKLEAK----AYAELLEE-----EGITIPAWFSFNSKDGINVVSGDSILECAS 235
+ ETI + AK A +L EE I I S ++ +G++ + S
Sbjct: 178 LLIETIFDTANAKAALFALQKLFEENYASPRPIFISGTIVDKSGRTLSGQTGEAFVTSVS 237
Query: 236 IADSCEQVVAVGINC 250
+D + +G+NC
Sbjct: 238 HSDP----LCIGLNC 248
>sp|Q8EQU5|RIMP_OCEIH Ribosome maturation factor RimP OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rimP PE=3
SV=1
Length = 156
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 5 SNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCL-VSSPHLVRKV-HL 62
G F+ ++ K GG +++ G +EL D +DP+ A L VSSP + R +
Sbjct: 31 KEGKNWFLRVYIDKEGGIDIMECGEVSELLSEKLDESDPITEAYFLEVSSPGVERPLKKK 90
Query: 63 DYLDA--GANIII--------TASYQATIQGFEAKGFSTEEAEALLRRSVEIA 105
+ DA G NI + + Y+ T+Q F+ + + E ++ VEI
Sbjct: 91 EDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTMEYKVKTRKKQVEIP 143
>sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2
Length = 1265
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 24 VVDGGFATELER--------HGADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 32 VLDGGMGTMIQREKLNEEHFRGQEFKDHARPLKGNNDILSITQPDVIYQIHKEYLLAGAD 91
Query: 71 IIITASYQATI-----QGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTG 125
II T ++ +T G E + A + R A E+ TG
Sbjct: 92 IIETNTFSSTSIAQADYGLEHLAYRMNMCSAGVARKA-----AEEVTLQ---------TG 137
Query: 126 SGRISSRPVLVAASVGSYGAYLA-DGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADL 184
R VA ++G L+ S DY + ++ + L E ++ + L + G D+
Sbjct: 138 IKR------FVAGALGPTNKTLSVSPSVERPDYRN-ITFDELVEAYQEQAKGLLDGGVDI 190
Query: 185 IAFETIPNKLEAK----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240
+ ETI + AK A L EE+ P + S D E I+ S
Sbjct: 191 LLIETIFDTANAKAALFALQNLFEEKYAPRPIFISGTIVDKSGRTLSGQTGEGFVISVSH 250
Query: 241 EQVVAVGINC 250
+ + +G+NC
Sbjct: 251 GEPLCIGLNC 260
>sp|Q09582|METH_CAEEL Probable methionine synthase OS=Caenorhabditis elegans GN=nos-1
PE=1 SV=1
Length = 1249
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 37/247 (14%)
Query: 24 VVDGGFATELER--------HGADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
++DG T ++R G L D PL L+S P ++ K+H YL+AGA+
Sbjct: 20 IIDGAMGTMIQREYMEEEDFRGEILKDHDKPLKGNNDLLSITRPDIIYKIHKLYLEAGAD 79
Query: 71 IIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACE--AREIYYDRCMKDSWDFTGSGR 128
+ T ++ T A+A R CE EI Y + G
Sbjct: 80 FVETNTFSGTTI-----------AQADYR------CEHLVHEINYQSALVARRACDDVGA 122
Query: 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE 188
+ R V ++G L+ V+ + L + + + L G D++ E
Sbjct: 123 ATGRRRYVCGAIGPTNRTLSISPSVEKPDFRNVTFQELVKAYGDQARSLIQGGVDVLLVE 182
Query: 189 TIPNKLEAK----AYAELLEEEGIT-IPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243
T+ + AK A L E+EG+ +P + S D E ++ +
Sbjct: 183 TVFDSANAKAALFAIRTLFEDEGVPEMPVFLSGTIVDMSGRTLSGQTGEAFLVSTKQGKP 242
Query: 244 VAVGINC 250
+AVG+NC
Sbjct: 243 MAVGLNC 249
>sp|O06745|YITJ_BACSU Bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase OS=Bacillus subtilis (strain 168) GN=yitJ PE=2
SV=1
Length = 612
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 49/230 (21%)
Query: 26 DGGFATELERHGADLNDPLWSAKCL----VSSPHLVRKVHLDYLDAGANIIITASYQATI 81
DG T L +G D +C +S P ++++H Y++AGANII T +Y A
Sbjct: 15 DGAMGTLLYSYGID--------RCFEELNISKPEEIQRIHKAYVEAGANIIQTNTYGANY 66
Query: 82 QGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG 141
G ++ + + + +V+IA R S+ V ++G
Sbjct: 67 IKLSRHGLE-DDIKKMNQEAVKIA----------------------RASAGDAYVLGTMG 103
Query: 142 SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAE 201
+ +A SL+ +K R ++ +L + D + ET + EA+ +
Sbjct: 104 GIRTF----------NKNAYSLDEIKRSFREQLYLLLHEEPDGLLLETYYDLEEAREVLK 153
Query: 202 LLEEEGITIPAWFSFNSKDGINVVSGDSILEC-ASIADSCEQVVAVGINC 250
+ +E +P + + + + G + + SIAD + VGINC
Sbjct: 154 IARKE-TDLPIMLNVSMHEQGVLQDGTPLSDALRSIADLGADI--VGINC 200
>sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr PE=2 SV=1
Length = 1253
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 24 VVDGGFATELERH--------GADLND---PLWSAKCLVS--SPHLVRKVHLDYLDAGAN 70
V+DGG T ++R+ G + D PL ++S P ++ ++H +YL AGA+
Sbjct: 19 VLDGGMGTMIQRYKLSEEHFQGQEFKDHSRPLKGNNDILSITQPDIIYQIHKEYLLAGAD 78
Query: 71 IIITASYQAT 80
II T ++ +T
Sbjct: 79 IIETNTFSST 88
>sp|B0TW67|MURC_FRAP2 UDP-N-acetylmuramate--L-alanine ligase OS=Francisella philomiragia
subsp. philomiragia (strain ATCC 25017) GN=murC PE=3
SV=1
Length = 452
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS- 239
GAD+ +++IPNKL K LE GI+I F+S + ++V D ++ ++I D+
Sbjct: 26 GADVAGYDSIPNKLTIK-----LESLGISI-----FSSPNNVDVSGYDMVVYSSAILDNH 75
Query: 240 --CEQVVAVGINCTSPRFIHGLIL 261
+ +G+ C L++
Sbjct: 76 PLLSKARVLGVQCLKRAMFLALLM 99
>sp|Q4L3K3|RPOB_STAHJ DNA-directed RNA polymerase subunit beta OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=rpoB PE=3 SV=1
Length = 1183
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 61 HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
H+ D+GA ITA Y+ ++ E+K E L+RR VE E DR
Sbjct: 663 HVAARDSGA--AITAKYRGRVEHVESK-------EILVRRLVEENGTEHEGELDRYPLAK 713
Query: 121 WDFTGSGR-ISSRPVLVAASVGSYGAYLADG 150
+ + +G + RP++ V Y LADG
Sbjct: 714 FKRSNTGTCYNQRPIVSVGDVVEYNEILADG 744
>sp|Q0VQG3|DAPE_ALCBS Succinyl-diaminopimelate desuccinylase OS=Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573) GN=dapE PE=3 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS 142
FSTE +A+LR VE + + YD W +G ++ R LV A+VG+
Sbjct: 258 FSTELTDAILRERVEAILDKHGLDYDL----QWTLSGQPFLTDRGALVDAAVGA 307
>sp|Q2RMW0|AROB_RHORT 3-dehydroquinate synthase OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=aroB PE=3 SV=1
Length = 385
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228
FH+ R+++ AD +T+P + Y E+++ I PA+F + + G +++GD
Sbjct: 174 FHQPRLVL-----ADTTVLDTLPRRELLAGYGEVVKYGVIDDPAFFDWLEEHGSALIAGD 228
Query: 229 SILECASIADSCE 241
++ +C
Sbjct: 229 GGARIHAVLTACR 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,401,565
Number of Sequences: 539616
Number of extensions: 4098374
Number of successful extensions: 10341
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10268
Number of HSP's gapped (non-prelim): 62
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)