Query 024544
Match_columns 266
No_of_seqs 121 out of 1064
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 2.9E-64 6.2E-69 466.9 21.4 258 7-265 7-264 (335)
2 PRK09485 mmuM homocysteine met 100.0 8.7E-62 1.9E-66 445.4 19.2 235 11-265 3-237 (304)
3 KOG1579 Homocysteine S-methylt 100.0 7.9E-60 1.7E-64 424.0 18.7 235 12-264 9-244 (317)
4 COG2040 MHT1 Homocysteine/sele 100.0 5.1E-60 1.1E-64 419.9 15.4 220 20-263 8-227 (300)
5 PF02574 S-methyl_trans: Homoc 100.0 3.5E-58 7.7E-63 421.3 5.8 221 22-262 1-233 (305)
6 PRK07534 methionine synthase I 100.0 3.2E-54 6.9E-59 399.6 19.2 220 8-261 1-224 (336)
7 COG0646 MetH Methionine syntha 100.0 1.9E-52 4E-57 373.2 16.8 232 8-265 4-244 (311)
8 PRK09490 metH B12-dependent me 100.0 3.3E-52 7.1E-57 432.7 17.6 240 6-264 5-265 (1229)
9 PRK08645 bifunctional homocyst 100.0 1.5E-50 3.3E-55 401.4 18.4 216 12-264 4-220 (612)
10 TIGR02082 metH 5-methyltetrahy 100.0 3E-50 6.6E-55 418.7 16.4 228 20-265 3-250 (1178)
11 PRK15063 isocitrate lyase; Pro 94.7 0.54 1.2E-05 45.4 12.0 32 173-205 270-302 (428)
12 PRK11320 prpB 2-methylisocitra 94.5 0.4 8.8E-06 44.1 10.4 41 172-217 170-210 (292)
13 cd00377 ICL_PEPM Members of th 94.2 0.61 1.3E-05 41.6 10.6 39 173-216 165-203 (243)
14 TIGR02317 prpB methylisocitrat 94.1 0.51 1.1E-05 43.3 10.1 41 172-217 165-205 (285)
15 cd06556 ICL_KPHMT Members of t 93.8 0.92 2E-05 40.5 10.9 72 134-215 126-197 (240)
16 TIGR02320 PEP_mutase phosphoen 93.7 0.76 1.7E-05 42.1 10.5 42 173-214 174-216 (285)
17 TIGR02319 CPEP_Pphonmut carbox 93.1 1.1 2.5E-05 41.2 10.6 41 172-217 169-209 (294)
18 TIGR00222 panB 3-methyl-2-oxob 92.0 1.9 4E-05 39.2 10.4 82 174-261 99-192 (263)
19 COG0159 TrpA Tryptophan syntha 91.9 4.8 0.0001 36.6 12.9 162 53-261 29-225 (265)
20 PF13714 PEP_mutase: Phosphoen 91.6 2.2 4.8E-05 38.0 10.4 116 53-216 83-198 (238)
21 PRK05692 hydroxymethylglutaryl 91.5 2.7 6E-05 38.4 11.2 65 168-238 155-222 (287)
22 cd06557 KPHMT-like Ketopantoat 91.3 3.2 6.9E-05 37.4 11.1 104 134-259 74-188 (254)
23 PF00682 HMGL-like: HMGL-like 91.0 7 0.00015 34.1 13.0 137 52-238 64-204 (237)
24 PLN02591 tryptophan synthase 90.9 6.5 0.00014 35.4 12.7 87 174-261 99-209 (250)
25 COG0826 Collagenase and relate 90.6 1.5 3.2E-05 41.4 8.6 99 64-218 22-122 (347)
26 PRK00311 panB 3-methyl-2-oxobu 90.4 2.8 6.1E-05 38.0 10.0 81 174-259 100-191 (264)
27 COG0646 MetH Methionine syntha 89.8 8.2 0.00018 35.7 12.3 153 60-264 148-310 (311)
28 TIGR00612 ispG_gcpE 1-hydroxy- 89.1 0.89 1.9E-05 42.5 5.7 80 170-252 36-132 (346)
29 PLN02746 hydroxymethylglutaryl 89.0 7.6 0.00016 36.6 12.0 63 169-238 198-264 (347)
30 PLN02424 ketopantoate hydroxym 88.5 5.6 0.00012 37.3 10.5 103 133-256 96-209 (332)
31 cd00945 Aldolase_Class_I Class 88.0 14 0.0003 30.6 12.1 24 53-76 11-34 (201)
32 PF01729 QRPTase_C: Quinolinat 88.0 1 2.3E-05 38.0 5.1 65 173-250 92-156 (169)
33 COG2224 AceA Isocitrate lyase 87.7 3.7 8.1E-05 39.3 9.0 28 182-209 284-312 (433)
34 COG2513 PrpB PEP phosphonomuta 86.0 0.84 1.8E-05 41.8 3.6 33 172-204 170-202 (289)
35 PRK12677 xylose isomerase; Pro 85.7 14 0.00031 35.2 12.0 73 162-237 147-232 (384)
36 PRK00366 ispG 4-hydroxy-3-meth 84.9 2.2 4.8E-05 40.2 5.9 81 169-252 43-141 (360)
37 PRK08645 bifunctional homocyst 84.7 19 0.00042 36.4 13.0 154 54-263 120-285 (612)
38 cd07938 DRE_TIM_HMGL 3-hydroxy 84.2 16 0.00035 33.1 11.2 64 169-238 150-216 (274)
39 PF02574 S-methyl_trans: Homoc 84.0 6 0.00013 36.2 8.4 162 53-264 129-304 (305)
40 COG0821 gcpE 1-hydroxy-2-methy 84.0 2.4 5.2E-05 39.7 5.6 80 170-252 38-134 (361)
41 cd07939 DRE_TIM_NifV Streptomy 83.9 31 0.00067 30.7 12.9 64 168-238 139-205 (259)
42 PRK09485 mmuM homocysteine met 83.2 26 0.00056 32.2 12.2 155 54-263 135-302 (304)
43 PRK07896 nicotinate-nucleotide 83.1 2.6 5.5E-05 38.8 5.5 64 174-250 212-275 (289)
44 TIGR01463 mtaA_cmuA methyltran 82.8 6.1 0.00013 36.6 8.0 69 174-251 248-318 (340)
45 COG5309 Exo-beta-1,3-glucanase 82.3 24 0.00052 32.3 11.1 46 147-195 242-287 (305)
46 CHL00200 trpA tryptophan synth 81.9 26 0.00056 31.7 11.5 87 174-261 112-222 (263)
47 PLN02495 oxidoreductase, actin 81.6 15 0.00032 35.2 10.2 70 173-251 132-217 (385)
48 PLN02489 homocysteine S-methyl 81.4 26 0.00056 32.8 11.7 154 55-265 163-333 (335)
49 PF04551 GcpE: GcpE protein; 81.2 2.4 5.2E-05 40.0 4.6 83 172-255 35-146 (359)
50 PRK05848 nicotinate-nucleotide 81.2 3.2 7E-05 37.8 5.4 65 173-250 194-258 (273)
51 cd07947 DRE_TIM_Re_CS Clostrid 81.1 27 0.00058 31.8 11.4 68 166-238 147-226 (279)
52 PRK13111 trpA tryptophan synth 81.1 29 0.00063 31.3 11.5 87 174-261 110-220 (258)
53 TIGR02660 nifV_homocitr homoci 81.0 39 0.00084 31.9 12.8 63 169-238 143-208 (365)
54 PRK12999 pyruvate carboxylase; 80.6 13 0.00029 40.5 10.6 86 135-238 669-757 (1146)
55 PF03437 BtpA: BtpA family; I 80.6 7.1 0.00015 35.2 7.3 37 155-193 18-54 (254)
56 smart00633 Glyco_10 Glycosyl h 80.3 8.6 0.00019 34.2 7.8 51 168-220 136-194 (254)
57 cd07941 DRE_TIM_LeuA3 Desulfob 80.2 45 0.00097 30.1 12.8 65 168-238 151-218 (273)
58 TIGR01496 DHPS dihydropteroate 80.1 44 0.00096 30.0 12.6 39 43-81 11-49 (257)
59 COG0434 SgcQ Predicted TIM-bar 78.9 2.9 6.3E-05 37.5 4.1 32 162-193 28-59 (263)
60 PRK07428 nicotinate-nucleotide 78.7 4.6 0.0001 37.1 5.6 65 173-250 208-272 (288)
61 PRK11858 aksA trans-homoaconit 78.7 49 0.0011 31.4 12.8 63 169-238 146-211 (378)
62 PF00478 IMPDH: IMP dehydrogen 77.5 5.4 0.00012 37.7 5.8 60 131-214 94-154 (352)
63 TIGR02635 RhaI_grampos L-rhamn 77.2 8.7 0.00019 36.7 7.1 150 52-238 69-229 (378)
64 PRK12331 oxaloacetate decarbox 77.1 24 0.00053 34.4 10.4 64 168-238 154-220 (448)
65 PRK00915 2-isopropylmalate syn 77.0 73 0.0016 31.6 13.8 67 168-238 149-219 (513)
66 TIGR02090 LEU1_arch isopropylm 76.5 54 0.0012 31.0 12.3 63 169-238 142-207 (363)
67 PRK07534 methionine synthase I 76.4 65 0.0014 30.2 12.7 116 131-263 170-293 (336)
68 PRK09389 (R)-citramalate synth 76.3 58 0.0013 32.2 12.8 64 168-238 143-209 (488)
69 PRK08385 nicotinate-nucleotide 75.8 7.2 0.00016 35.7 5.9 68 172-250 193-260 (278)
70 cd07948 DRE_TIM_HCS Saccharomy 75.7 47 0.001 29.9 11.2 59 173-238 146-207 (262)
71 PRK06843 inosine 5-monophospha 75.7 10 0.00022 36.6 7.1 62 131-216 139-201 (404)
72 cd06557 KPHMT-like Ketopantoat 75.3 4.7 0.0001 36.4 4.5 38 170-213 160-197 (254)
73 PRK12581 oxaloacetate decarbox 74.9 31 0.00068 33.9 10.4 65 167-238 162-229 (468)
74 PRK00311 panB 3-methyl-2-oxobu 74.6 5 0.00011 36.4 4.5 40 162-203 156-195 (264)
75 PRK06096 molybdenum transport 74.2 6.7 0.00015 36.0 5.3 63 173-248 201-263 (284)
76 cd07940 DRE_TIM_IPMS 2-isoprop 74.0 66 0.0014 28.8 13.5 67 168-238 143-212 (268)
77 PRK09490 metH B12-dependent me 73.7 56 0.0012 36.1 12.8 156 55-263 160-328 (1229)
78 TIGR02082 metH 5-methyltetrahy 73.5 56 0.0012 35.9 12.8 158 55-263 144-312 (1178)
79 PRK12330 oxaloacetate decarbox 73.3 44 0.00095 33.2 11.1 65 168-238 155-223 (499)
80 PRK02048 4-hydroxy-3-methylbut 73.0 8.5 0.00018 38.8 6.1 50 170-220 43-95 (611)
81 PRK12344 putative alpha-isopro 72.8 51 0.0011 32.8 11.6 64 168-238 158-224 (524)
82 PLN02925 4-hydroxy-3-methylbut 72.0 8.7 0.00019 39.4 5.9 50 170-220 112-164 (733)
83 PRK06252 methylcobalamin:coenz 72.0 31 0.00067 31.8 9.4 25 174-198 246-270 (339)
84 TIGR00259 thylakoid_BtpA membr 71.9 16 0.00036 33.0 7.2 34 161-194 21-54 (257)
85 cd06556 ICL_KPHMT Members of t 71.2 65 0.0014 28.7 10.8 83 174-261 95-188 (240)
86 PF01208 URO-D: Uroporphyrinog 71.0 77 0.0017 29.1 11.8 26 173-198 248-273 (343)
87 cd07945 DRE_TIM_CMS Leptospira 71.0 40 0.00088 30.6 9.7 64 169-238 148-214 (280)
88 PRK15452 putative protease; Pr 70.8 38 0.00083 33.0 10.0 108 51-218 10-119 (443)
89 PRK14041 oxaloacetate decarbox 70.8 51 0.0011 32.4 10.9 65 167-238 152-219 (467)
90 PF00290 Trp_syntA: Tryptophan 70.7 60 0.0013 29.3 10.6 33 174-207 108-140 (259)
91 cd04722 TIM_phosphate_binding 70.1 6.3 0.00014 32.2 3.9 78 169-253 13-95 (200)
92 TIGR02631 xylA_Arthro xylose i 70.1 80 0.0017 30.1 11.8 72 163-237 149-233 (382)
93 cd00958 DhnA Class I fructose- 69.8 22 0.00049 30.9 7.6 22 54-75 142-163 (235)
94 PF00701 DHDPS: Dihydrodipicol 69.1 88 0.0019 28.1 11.5 46 53-103 20-65 (289)
95 PRK14042 pyruvate carboxylase 69.0 51 0.0011 33.5 10.6 64 168-238 154-220 (596)
96 cd02930 DCR_FMN 2,4-dienoyl-Co 68.3 1E+02 0.0023 28.7 14.2 86 161-248 127-243 (353)
97 cd03174 DRE_TIM_metallolyase D 68.2 82 0.0018 27.5 13.4 63 170-238 148-213 (265)
98 PRK06106 nicotinate-nucleotide 67.6 10 0.00022 34.8 4.9 61 174-250 207-267 (281)
99 PRK05567 inosine 5'-monophosph 67.3 12 0.00027 36.6 5.9 66 171-248 230-296 (486)
100 cd03465 URO-D_like The URO-D _ 67.3 65 0.0014 29.3 10.4 24 174-197 236-259 (330)
101 TIGR01235 pyruv_carbox pyruvat 67.2 36 0.00078 37.3 9.7 65 167-238 688-755 (1143)
102 TIGR01108 oadA oxaloacetate de 67.1 61 0.0013 32.8 10.8 64 168-238 149-215 (582)
103 PRK06498 isocitrate lyase; Pro 67.0 8 0.00017 38.1 4.3 33 179-211 343-376 (531)
104 PRK05692 hydroxymethylglutaryl 66.8 70 0.0015 29.2 10.3 123 53-207 24-168 (287)
105 PRK09282 pyruvate carboxylase 66.4 65 0.0014 32.7 10.9 64 168-238 154-220 (592)
106 PF00701 DHDPS: Dihydrodipicol 65.9 22 0.00047 32.2 6.8 75 161-248 19-102 (289)
107 TIGR00222 panB 3-methyl-2-oxob 65.8 10 0.00022 34.4 4.6 67 133-204 129-195 (263)
108 PRK00694 4-hydroxy-3-methylbut 65.3 13 0.00028 37.4 5.5 49 171-220 48-99 (606)
109 PF01261 AP_endonuc_2: Xylose 65.1 71 0.0015 26.2 9.5 74 161-238 105-183 (213)
110 TIGR01334 modD putative molybd 65.0 14 0.00031 33.7 5.4 62 173-247 200-261 (277)
111 COG0167 PyrD Dihydroorotate de 64.5 52 0.0011 30.6 9.0 41 36-78 7-48 (310)
112 TIGR02321 Pphn_pyruv_hyd phosp 64.4 7.7 0.00017 35.7 3.6 39 172-213 170-209 (290)
113 PF01408 GFO_IDH_MocA: Oxidore 64.0 15 0.00032 28.0 4.7 24 180-204 61-84 (120)
114 cd03307 Mta_CmuA_like MtaA_Cmu 63.6 56 0.0012 30.0 9.2 80 174-262 237-323 (326)
115 TIGR00737 nifR3_yhdG putative 63.6 8.9 0.00019 35.3 3.9 69 179-254 29-100 (319)
116 PRK06052 5-methyltetrahydropte 63.2 38 0.00082 32.0 7.9 125 56-203 39-190 (344)
117 PRK07259 dihydroorotate dehydr 63.0 1E+02 0.0022 27.9 10.7 73 170-251 106-192 (301)
118 PF09370 TIM-br_sig_trns: TIM- 62.8 20 0.00043 32.6 5.8 50 22-75 118-177 (268)
119 cd01568 QPRTase_NadC Quinolina 62.7 15 0.00032 33.3 5.1 58 177-248 197-254 (269)
120 TIGR00973 leuA_bact 2-isopropy 62.5 1.7E+02 0.0036 29.0 13.1 66 169-238 147-216 (494)
121 PRK09016 quinolinate phosphori 62.5 14 0.0003 34.1 4.9 62 173-250 220-281 (296)
122 PRK14040 oxaloacetate decarbox 62.5 90 0.002 31.7 11.0 65 167-238 154-221 (593)
123 PLN02274 inosine-5'-monophosph 62.1 18 0.00039 35.8 5.9 43 172-214 251-294 (505)
124 PLN00124 succinyl-CoA ligase [ 61.5 25 0.00055 34.1 6.7 68 160-239 327-398 (422)
125 cd02803 OYE_like_FMN_family Ol 61.5 1.3E+02 0.0028 27.4 12.3 76 173-259 233-324 (327)
126 PRK01130 N-acetylmannosamine-6 61.4 16 0.00035 31.6 5.0 26 51-76 19-44 (221)
127 TIGR00683 nanA N-acetylneurami 60.9 1.3E+02 0.0027 27.4 10.9 23 53-75 19-42 (290)
128 PLN03228 methylthioalkylmalate 60.7 1.8E+02 0.004 28.9 13.6 66 169-238 240-309 (503)
129 KOG2335 tRNA-dihydrouridine sy 60.5 6.2 0.00013 37.3 2.2 40 209-256 73-112 (358)
130 cd00377 ICL_PEPM Members of th 60.3 1.2E+02 0.0027 26.8 11.1 86 173-261 89-193 (243)
131 COG5016 Pyruvate/oxaloacetate 60.2 63 0.0014 31.4 8.8 75 167-250 155-232 (472)
132 cd04728 ThiG Thiazole synthase 60.1 80 0.0017 28.5 9.1 27 52-81 20-46 (248)
133 PRK05458 guanosine 5'-monophos 59.7 24 0.00053 33.0 6.0 43 172-214 100-145 (326)
134 cd08205 RuBisCO_IV_RLP Ribulos 59.5 65 0.0014 30.6 9.0 23 53-75 144-166 (367)
135 cd01572 QPRTase Quinolinate ph 59.2 18 0.00039 32.8 4.9 60 174-249 195-254 (268)
136 cd00952 CHBPH_aldolase Trans-o 59.1 1.5E+02 0.0032 27.3 11.1 46 53-104 27-73 (309)
137 cd04747 OYE_like_5_FMN Old yel 58.9 1.6E+02 0.0036 27.8 12.9 92 161-259 232-341 (361)
138 TIGR03249 KdgD 5-dehydro-4-deo 58.8 38 0.00083 30.8 7.1 74 161-248 23-105 (296)
139 PRK05286 dihydroorotate dehydr 58.7 1E+02 0.0023 28.7 10.2 39 37-79 55-93 (344)
140 TIGR02313 HpaI-NOT-DapA 2,4-di 58.6 1.4E+02 0.0031 27.1 10.9 46 53-103 19-64 (294)
141 PLN02321 2-isopropylmalate syn 58.5 2.1E+02 0.0046 29.3 12.9 66 169-238 241-310 (632)
142 COG5564 Predicted TIM-barrel e 58.3 27 0.00058 31.2 5.6 85 20-109 122-218 (276)
143 TIGR01303 IMP_DH_rel_1 IMP deh 58.3 21 0.00046 35.1 5.7 48 169-216 225-273 (475)
144 cd04734 OYE_like_3_FMN Old yel 58.3 1.6E+02 0.0035 27.5 12.7 23 55-77 134-163 (343)
145 PRK05742 nicotinate-nucleotide 58.0 20 0.00044 32.7 5.1 62 173-250 201-262 (277)
146 cd00408 DHDPS-like Dihydrodipi 57.9 1.4E+02 0.003 26.6 11.2 46 53-103 16-61 (281)
147 cd02931 ER_like_FMN Enoate red 57.7 1.6E+02 0.0034 28.0 11.4 22 55-76 143-171 (382)
148 COG0329 DapA Dihydrodipicolina 57.7 32 0.00069 31.6 6.4 74 161-247 22-104 (299)
149 TIGR00683 nanA N-acetylneurami 57.6 39 0.00085 30.7 7.0 75 161-248 18-102 (290)
150 PLN02417 dihydrodipicolinate s 57.3 41 0.0009 30.4 7.0 78 161-253 19-105 (280)
151 cd00950 DHDPS Dihydrodipicolin 56.8 41 0.00088 30.2 6.9 66 161-239 18-90 (284)
152 cd01573 modD_like ModD; Quinol 56.6 25 0.00055 31.9 5.5 57 177-246 199-255 (272)
153 TIGR00674 dapA dihydrodipicoli 56.3 1.5E+02 0.0033 26.6 11.3 22 54-75 18-39 (285)
154 cd00958 DhnA Class I fructose- 56.3 21 0.00045 31.1 4.8 85 173-261 81-176 (235)
155 TIGR01769 GGGP geranylgeranylg 55.9 18 0.00039 31.5 4.2 41 173-214 16-58 (205)
156 PF03481 SUA5: Putative GTP-bi 55.6 23 0.0005 28.0 4.5 44 162-205 79-122 (125)
157 COG0279 GmhA Phosphoheptose is 55.5 48 0.001 28.2 6.5 92 130-224 40-150 (176)
158 PRK03620 5-dehydro-4-deoxygluc 55.2 51 0.0011 30.2 7.3 52 161-216 25-83 (303)
159 PRK00865 glutamate racemase; P 55.2 31 0.00067 30.9 5.8 35 156-191 43-77 (261)
160 TIGR00674 dapA dihydrodipicoli 55.0 48 0.001 29.9 7.1 66 161-239 16-88 (285)
161 PRK12858 tagatose 1,6-diphosph 54.6 1.9E+02 0.0041 27.2 12.2 18 62-79 113-130 (340)
162 TIGR01302 IMP_dehydrog inosine 54.5 36 0.00078 33.1 6.5 65 171-247 226-291 (450)
163 PF07302 AroM: AroM protein; 54.1 27 0.00059 30.9 5.1 41 173-217 170-210 (221)
164 PRK06559 nicotinate-nucleotide 54.0 25 0.00055 32.4 5.0 62 173-250 209-270 (290)
165 cd00408 DHDPS-like Dihydrodipi 53.7 50 0.0011 29.5 6.9 75 161-248 15-98 (281)
166 PRK06978 nicotinate-nucleotide 53.0 26 0.00055 32.4 4.9 63 172-250 216-278 (294)
167 cd00950 DHDPS Dihydrodipicolin 53.0 1.7E+02 0.0037 26.2 11.1 46 53-103 19-64 (284)
168 TIGR01037 pyrD_sub1_fam dihydr 52.9 31 0.00066 31.3 5.5 37 209-254 90-130 (300)
169 cd04729 NanE N-acetylmannosami 52.8 28 0.00062 30.0 5.0 27 51-77 23-49 (219)
170 cd04823 ALAD_PBGS_aspartate_ri 52.7 10 0.00023 35.2 2.3 26 50-75 285-310 (320)
171 cd00384 ALAD_PBGS Porphobilino 52.6 11 0.00023 35.1 2.3 25 51-75 281-305 (314)
172 PF02515 CoA_transf_3: CoA-tra 52.6 41 0.00088 28.5 5.9 40 50-94 4-43 (191)
173 cd04824 eu_ALAD_PBGS_cysteine_ 52.4 11 0.00023 35.1 2.3 26 50-75 286-311 (320)
174 TIGR03855 NAD_NadX aspartate d 52.1 28 0.0006 30.8 4.9 45 168-215 48-95 (229)
175 PRK15452 putative protease; Pr 51.9 31 0.00067 33.6 5.6 43 173-217 15-67 (443)
176 PRK13384 delta-aminolevulinic 51.6 11 0.00024 35.1 2.2 26 50-75 289-314 (322)
177 PRK06543 nicotinate-nucleotide 51.3 29 0.00062 31.8 4.9 62 173-250 205-266 (281)
178 TIGR03128 RuMP_HxlA 3-hexulose 50.7 45 0.00097 28.3 5.9 66 173-249 68-133 (206)
179 cd00954 NAL N-Acetylneuraminic 50.5 1.9E+02 0.0042 26.0 11.1 46 53-103 19-65 (288)
180 PRK13533 7-cyano-7-deazaguanin 50.2 2.7E+02 0.0058 27.6 12.2 136 20-214 82-224 (487)
181 cd00381 IMPDH IMPDH: The catal 49.9 40 0.00086 31.4 5.8 44 171-214 96-140 (325)
182 cd03312 CIMS_N_terminal_like C 49.8 41 0.00088 31.8 5.9 80 163-252 177-264 (360)
183 TIGR00078 nadC nicotinate-nucl 49.8 32 0.0007 31.1 5.0 60 173-248 190-249 (265)
184 KOG2794 Delta-aminolevulinic a 49.8 12 0.00026 34.2 2.2 25 51-75 303-327 (340)
185 PRK13210 putative L-xylulose 5 49.6 1.8E+02 0.004 25.5 10.7 71 161-235 126-198 (284)
186 PTZ00344 pyridoxal kinase; Pro 48.7 83 0.0018 28.5 7.6 77 159-235 55-134 (296)
187 PRK03170 dihydrodipicolinate s 48.5 2.1E+02 0.0045 25.8 11.0 24 53-76 20-43 (292)
188 cd04740 DHOD_1B_like Dihydroor 48.2 57 0.0012 29.4 6.5 73 170-251 104-189 (296)
189 TIGR01163 rpe ribulose-phospha 47.9 43 0.00093 28.2 5.3 45 169-214 12-61 (210)
190 cd03308 CmuA_CmuC_like CmuA_Cm 47.7 1.7E+02 0.0038 27.6 9.9 49 50-103 198-258 (378)
191 PRK02412 aroD 3-dehydroquinate 47.4 58 0.0013 29.1 6.3 82 173-259 100-184 (253)
192 PF00682 HMGL-like: HMGL-like 47.2 51 0.0011 28.6 5.8 84 175-264 74-176 (237)
193 PF00490 ALAD: Delta-aminolevu 46.9 13 0.00028 34.7 2.0 25 51-75 291-315 (324)
194 TIGR03700 mena_SCO4494 putativ 46.9 39 0.00085 31.6 5.3 76 171-254 150-242 (351)
195 TIGR00693 thiE thiamine-phosph 46.8 1.7E+02 0.0037 24.4 9.5 16 174-189 109-124 (196)
196 TIGR00977 LeuA_rel 2-isopropyl 46.7 3.1E+02 0.0068 27.4 13.8 63 169-238 155-221 (526)
197 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.4 43 0.00092 30.3 5.3 84 174-264 97-188 (275)
198 PRK07094 biotin synthase; Prov 45.6 49 0.0011 30.3 5.6 74 172-253 130-219 (323)
199 TIGR03249 KdgD 5-dehydro-4-deo 45.6 2.3E+02 0.0051 25.6 10.7 23 53-75 24-46 (296)
200 cd04738 DHOD_2_like Dihydrooro 45.5 2.5E+02 0.0053 26.0 10.3 77 167-250 147-238 (327)
201 cd00951 KDGDH 5-dehydro-4-deox 45.2 2.4E+02 0.0051 25.5 10.5 23 53-75 19-41 (289)
202 PF02310 B12-binding: B12 bind 45.0 50 0.0011 25.1 4.8 43 174-216 44-88 (121)
203 PRK09283 delta-aminolevulinic 44.9 17 0.00036 34.0 2.3 25 51-75 289-313 (323)
204 TIGR01346 isocit_lyase isocitr 44.8 26 0.00057 34.8 3.8 32 180-211 378-410 (527)
205 cd00952 CHBPH_aldolase Trans-o 44.8 87 0.0019 28.7 7.2 75 161-248 26-109 (309)
206 PF06187 DUF993: Protein of un 44.6 73 0.0016 30.1 6.5 28 161-188 125-152 (382)
207 cd04732 HisA HisA. Phosphorib 44.3 65 0.0014 27.8 6.0 72 174-248 88-165 (234)
208 PLN02892 isocitrate lyase 44.3 29 0.00062 34.9 4.0 32 180-211 399-431 (570)
209 TIGR00036 dapB dihydrodipicoli 44.3 42 0.00092 30.1 4.9 48 169-218 80-127 (266)
210 cd04740 DHOD_1B_like Dihydroor 44.1 34 0.00074 30.9 4.3 39 209-254 89-127 (296)
211 PRK07565 dihydroorotate dehydr 44.1 2.6E+02 0.0057 25.8 11.6 66 172-246 118-194 (334)
212 cd07943 DRE_TIM_HOA 4-hydroxy- 44.1 31 0.00068 30.8 4.0 83 174-264 91-180 (263)
213 COG0113 HemB Delta-aminolevuli 43.8 18 0.00038 33.6 2.3 25 51-75 294-318 (330)
214 PRK03170 dihydrodipicolinate s 43.7 77 0.0017 28.6 6.6 66 161-239 19-91 (292)
215 PLN02716 nicotinate-nucleotide 43.7 43 0.00093 31.1 4.9 63 173-250 215-291 (308)
216 cd02940 DHPD_FMN Dihydropyrimi 43.6 2.5E+02 0.0055 25.5 10.7 29 53-81 111-139 (299)
217 TIGR02313 HpaI-NOT-DapA 2,4-di 43.4 88 0.0019 28.5 6.9 66 161-239 18-90 (294)
218 PRK02083 imidazole glycerol ph 43.1 2.3E+02 0.005 24.9 11.0 43 174-218 159-206 (253)
219 PLN02270 phospholipase D alpha 42.6 1E+02 0.0022 32.5 7.7 106 57-182 497-609 (808)
220 cd02933 OYE_like_FMN Old yello 42.6 2.9E+02 0.0062 25.8 12.5 83 162-260 239-328 (338)
221 cd06822 PLPDE_III_YBL036c_euk 42.2 56 0.0012 28.8 5.3 68 186-254 92-165 (227)
222 cd04725 OMP_decarboxylase_like 41.9 1.9E+02 0.0042 24.9 8.6 29 51-79 59-87 (216)
223 KOG2949 Ketopantoate hydroxyme 41.6 1.1E+02 0.0025 27.4 6.9 86 169-258 118-214 (306)
224 cd00452 KDPG_aldolase KDPG and 41.5 47 0.001 28.1 4.5 57 178-248 114-170 (190)
225 cd02932 OYE_YqiM_FMN Old yello 41.3 2.9E+02 0.0063 25.5 13.6 77 160-238 143-248 (336)
226 COG0119 LeuA Isopropylmalate/h 40.9 3.4E+02 0.0074 26.2 13.4 132 55-238 76-214 (409)
227 cd04726 KGPDC_HPS 3-Keto-L-gul 40.3 62 0.0013 27.1 5.1 41 173-215 69-109 (202)
228 PRK05222 5-methyltetrahydropte 40.3 2.9E+02 0.0063 28.9 10.8 61 173-239 652-712 (758)
229 PRK13125 trpA tryptophan synth 39.9 76 0.0016 28.0 5.8 34 174-207 94-129 (244)
230 PRK14042 pyruvate carboxylase 39.9 50 0.0011 33.5 5.1 86 174-265 102-194 (596)
231 PRK05398 formyl-coenzyme A tra 39.7 80 0.0017 30.4 6.3 40 50-94 73-112 (416)
232 TIGR02629 L_rham_iso_rhiz L-rh 39.7 3.6E+02 0.0079 26.2 11.2 161 53-250 99-275 (412)
233 PRK02412 aroD 3-dehydroquinate 39.3 54 0.0012 29.3 4.7 57 162-222 26-87 (253)
234 COG0673 MviM Predicted dehydro 39.2 43 0.00092 30.4 4.2 48 168-218 78-127 (342)
235 COG0325 Predicted enzyme with 39.2 62 0.0013 28.8 5.0 70 183-253 93-165 (228)
236 cd02932 OYE_YqiM_FMN Old yello 39.1 3.1E+02 0.0068 25.2 12.7 21 56-76 148-175 (336)
237 cd06824 PLPDE_III_Yggs_like Py 39.0 62 0.0013 28.1 5.0 65 186-251 95-162 (224)
238 TIGR03551 F420_cofH 7,8-dideme 38.9 56 0.0012 30.4 5.0 59 171-237 141-214 (343)
239 PTZ00170 D-ribulose-5-phosphat 38.8 85 0.0018 27.5 5.9 42 174-217 81-122 (228)
240 TIGR00542 hxl6Piso_put hexulos 38.8 2.8E+02 0.006 24.5 11.8 54 162-219 127-182 (279)
241 COG1830 FbaB DhnA-type fructos 38.8 88 0.0019 28.5 5.9 29 52-81 163-191 (265)
242 PF00248 Aldo_ket_red: Aldo/ke 38.6 2E+02 0.0043 25.3 8.4 112 52-207 14-129 (283)
243 PF07364 DUF1485: Protein of u 38.5 1.5E+02 0.0032 27.3 7.6 52 167-220 81-142 (292)
244 PF08267 Meth_synt_1: Cobalami 38.5 89 0.0019 29.0 6.1 89 162-260 175-271 (310)
245 cd00951 KDGDH 5-dehydro-4-deox 38.4 1.3E+02 0.0028 27.2 7.2 53 161-217 18-77 (289)
246 cd04724 Tryptophan_synthase_al 38.1 59 0.0013 28.8 4.8 18 171-188 17-34 (242)
247 TIGR00007 phosphoribosylformim 37.6 90 0.002 26.9 5.8 45 174-220 87-131 (230)
248 PLN02417 dihydrodipicolinate s 37.6 3.1E+02 0.0066 24.7 11.2 46 53-103 20-65 (280)
249 PTZ00314 inosine-5'-monophosph 37.6 1.2E+02 0.0025 30.1 7.2 44 171-214 243-287 (495)
250 PF14394 DUF4423: Domain of un 37.5 57 0.0012 27.5 4.3 32 53-84 93-134 (171)
251 PRK10558 alpha-dehydro-beta-de 37.5 73 0.0016 28.6 5.3 42 174-217 33-77 (256)
252 cd02810 DHOD_DHPD_FMN Dihydroo 37.5 36 0.00077 30.6 3.3 40 37-80 5-45 (289)
253 cd01571 NAPRTase_B Nicotinate 37.4 50 0.0011 30.4 4.3 60 181-251 211-275 (302)
254 PRK12331 oxaloacetate decarbox 37.3 62 0.0013 31.7 5.1 87 174-264 102-193 (448)
255 cd06843 PLPDE_III_PvsE_like Ty 37.2 84 0.0018 29.4 5.9 71 175-248 85-169 (377)
256 TIGR00067 glut_race glutamate 37.2 40 0.00087 30.1 3.6 35 156-191 36-73 (251)
257 PRK13398 3-deoxy-7-phosphohept 37.1 2.8E+02 0.0062 25.0 9.1 30 49-78 35-64 (266)
258 COG5016 Pyruvate/oxaloacetate 36.7 70 0.0015 31.1 5.2 54 164-220 97-151 (472)
259 COG0157 NadC Nicotinate-nucleo 36.6 85 0.0018 28.8 5.5 62 173-248 200-261 (280)
260 TIGR00262 trpA tryptophan synt 36.5 3.1E+02 0.0068 24.5 12.0 30 47-76 14-45 (256)
261 PRK04147 N-acetylneuraminate l 36.2 1.3E+02 0.0028 27.2 6.8 66 161-239 21-94 (293)
262 PRK04302 triosephosphate isome 36.1 83 0.0018 27.3 5.4 46 173-218 126-182 (223)
263 TIGR02311 HpaI 2,4-dihydroxyhe 36.1 88 0.0019 27.9 5.6 41 174-216 26-69 (249)
264 cd02930 DCR_FMN 2,4-dienoyl-Co 36.0 3E+02 0.0064 25.7 9.4 101 87-207 125-237 (353)
265 COG3623 SgaU Putative L-xylulo 35.7 1.8E+02 0.0039 26.3 7.3 101 55-193 54-159 (287)
266 PF02548 Pantoate_transf: Keto 35.7 1.2E+02 0.0026 27.6 6.3 100 133-254 77-187 (261)
267 TIGR03239 GarL 2-dehydro-3-deo 35.4 83 0.0018 28.1 5.3 43 174-218 26-71 (249)
268 COG1038 PycA Pyruvate carboxyl 35.3 74 0.0016 33.7 5.4 64 167-237 693-759 (1149)
269 TIGR01235 pyruv_carbox pyruvat 35.2 75 0.0016 34.9 5.8 90 174-264 631-728 (1143)
270 TIGR01917 gly_red_sel_B glycin 34.9 1E+02 0.0022 30.0 6.1 56 161-218 316-373 (431)
271 PRK05286 dihydroorotate dehydr 34.9 1.3E+02 0.0027 28.2 6.7 55 198-254 126-181 (344)
272 COG0329 DapA Dihydrodipicolina 34.7 3.6E+02 0.0078 24.6 11.1 27 53-79 23-49 (299)
273 COG1646 Predicted phosphate-bi 34.6 61 0.0013 29.0 4.2 46 169-215 29-76 (240)
274 PRK12330 oxaloacetate decarbox 34.5 78 0.0017 31.5 5.3 87 174-264 103-194 (499)
275 PLN02424 ketopantoate hydroxym 34.3 93 0.002 29.3 5.5 65 133-203 151-216 (332)
276 TIGR03239 GarL 2-dehydro-3-deo 34.3 45 0.00097 29.8 3.4 33 173-205 76-108 (249)
277 TIGR02660 nifV_homocitr homoci 34.3 71 0.0015 30.1 4.9 22 54-75 22-43 (365)
278 PF01791 DeoC: DeoC/LacD famil 34.2 31 0.00067 30.2 2.3 25 53-77 144-168 (236)
279 PF13653 GDPD_2: Glycerophosph 34.0 38 0.00083 20.3 2.0 16 60-75 12-27 (30)
280 PLN03231 putative alpha-galact 33.9 80 0.0017 30.0 5.1 54 162-217 157-215 (357)
281 TIGR01371 met_syn_B12ind 5-met 33.8 1.1E+02 0.0024 31.9 6.6 85 163-257 173-266 (750)
282 PF01180 DHO_dh: Dihydroorotat 33.8 1.1E+02 0.0024 27.6 6.0 38 37-78 8-45 (295)
283 PRK00115 hemE uroporphyrinogen 33.7 3.3E+02 0.0072 25.1 9.3 48 50-104 170-228 (346)
284 TIGR00640 acid_CoA_mut_C methy 33.5 2E+02 0.0042 23.1 6.7 41 174-214 46-89 (132)
285 PRK12581 oxaloacetate decarbox 33.2 75 0.0016 31.3 5.0 87 174-264 111-202 (468)
286 PRK04147 N-acetylneuraminate l 32.7 3.7E+02 0.0081 24.2 10.9 46 53-103 22-68 (293)
287 cd02801 DUS_like_FMN Dihydrour 32.7 71 0.0015 27.4 4.4 67 181-254 23-92 (231)
288 cd02072 Glm_B12_BD B12 binding 32.4 1.8E+02 0.0039 23.4 6.3 43 175-217 44-89 (128)
289 COG0036 Rpe Pentose-5-phosphat 32.1 62 0.0013 28.6 3.8 39 173-216 76-116 (220)
290 KOG0538 Glycolate oxidase [Ene 32.0 42 0.00091 31.4 2.8 78 175-261 238-327 (363)
291 PRK13587 1-(5-phosphoribosyl)- 31.9 1.5E+02 0.0032 26.2 6.2 74 174-251 91-170 (234)
292 PRK01261 aroD 3-dehydroquinate 31.4 1.6E+02 0.0035 26.0 6.4 49 162-217 31-84 (229)
293 PRK14041 oxaloacetate decarbox 31.4 78 0.0017 31.2 4.8 85 174-264 101-192 (467)
294 PRK09722 allulose-6-phosphate 31.3 71 0.0015 28.3 4.1 33 173-207 74-108 (229)
295 PRK13585 1-(5-phosphoribosyl)- 31.3 1.3E+02 0.0029 26.0 5.9 45 175-221 92-136 (241)
296 cd04738 DHOD_2_like Dihydrooro 31.3 91 0.002 28.9 5.0 44 209-254 128-172 (327)
297 PF00331 Glyco_hydro_10: Glyco 31.1 2.2E+02 0.0048 26.2 7.6 46 167-215 187-239 (320)
298 COG1856 Uncharacterized homolo 30.9 1E+02 0.0022 27.7 4.9 28 99-145 205-232 (275)
299 PF13407 Peripla_BP_4: Peripla 30.9 74 0.0016 27.2 4.2 40 172-214 46-85 (257)
300 PRK10558 alpha-dehydro-beta-de 30.8 54 0.0012 29.4 3.3 32 174-205 84-115 (256)
301 PRK01060 endonuclease IV; Prov 30.8 3.7E+02 0.0081 23.6 10.1 63 166-231 122-191 (281)
302 cd01129 PulE-GspE PulE/GspE Th 30.7 1.5E+02 0.0032 26.6 6.2 46 169-217 137-182 (264)
303 TIGR01740 pyrF orotidine 5'-ph 30.7 3.5E+02 0.0075 23.2 8.4 28 52-79 60-87 (213)
304 PLN02475 5-methyltetrahydropte 30.6 1.4E+02 0.003 31.4 6.6 85 163-257 181-276 (766)
305 PRK11579 putative oxidoreducta 30.6 90 0.0019 28.8 4.9 46 169-217 76-123 (346)
306 cd00954 NAL N-Acetylneuraminic 30.6 1.8E+02 0.004 26.2 6.8 74 161-247 18-101 (288)
307 PRK15447 putative protease; Pr 30.5 78 0.0017 29.0 4.4 45 166-216 17-68 (301)
308 COG1679 Predicted aconitase [G 30.5 96 0.0021 29.7 5.0 54 162-217 272-328 (403)
309 PRK14040 oxaloacetate decarbox 30.4 85 0.0018 31.9 5.0 87 174-264 103-194 (593)
310 TIGR00423 radical SAM domain p 30.3 96 0.0021 28.3 5.0 75 171-253 107-198 (309)
311 PRK08610 fructose-bisphosphate 30.2 48 0.001 30.5 2.9 25 226-252 86-110 (286)
312 COG0106 HisA Phosphoribosylfor 30.1 1.3E+02 0.0028 27.0 5.5 63 173-238 89-157 (241)
313 PRK10886 DnaA initiator-associ 29.9 1.2E+02 0.0026 26.0 5.3 54 166-223 95-149 (196)
314 PRK13302 putative L-aspartate 29.8 88 0.0019 28.2 4.6 43 169-214 79-121 (271)
315 cd08210 RLP_RrRLP Ribulose bis 29.8 3.7E+02 0.0081 25.5 8.9 24 53-76 139-162 (364)
316 TIGR00044 pyridoxal phosphate 29.4 1.1E+02 0.0023 26.8 4.9 64 187-251 98-164 (229)
317 PRK07807 inosine 5-monophospha 29.1 2.9E+02 0.0062 27.3 8.3 95 55-214 226-335 (479)
318 cd08205 RuBisCO_IV_RLP Ribulos 29.1 1.3E+02 0.0028 28.6 5.7 27 161-191 143-170 (367)
319 PRK10128 2-keto-3-deoxy-L-rham 29.1 1.2E+02 0.0026 27.5 5.3 41 174-216 32-75 (267)
320 PRK08091 ribulose-phosphate 3- 28.9 90 0.002 27.7 4.3 67 173-253 83-151 (228)
321 cd00578 L-fuc_L-ara-isomerases 28.9 1.4E+02 0.003 28.9 6.0 45 162-206 17-62 (452)
322 PRK10128 2-keto-3-deoxy-L-rham 28.8 62 0.0013 29.3 3.4 33 173-205 82-114 (267)
323 PRK10550 tRNA-dihydrouridine s 28.8 94 0.002 28.7 4.7 67 181-254 25-100 (312)
324 TIGR03699 mena_SCO4550 menaqui 28.7 1E+02 0.0022 28.5 4.9 72 171-250 143-231 (340)
325 PRK07709 fructose-bisphosphate 28.7 60 0.0013 29.8 3.3 25 226-252 86-110 (285)
326 TIGR00742 yjbN tRNA dihydrouri 28.6 74 0.0016 29.5 3.9 67 181-254 24-92 (318)
327 cd06334 PBP1_ABC_ligand_bindin 28.6 1E+02 0.0023 28.3 5.0 43 169-213 183-225 (351)
328 PRK13586 1-(5-phosphoribosyl)- 28.5 1.8E+02 0.0039 25.6 6.2 64 174-239 88-157 (232)
329 PRK09121 5-methyltetrahydropte 28.3 2.3E+02 0.005 26.4 7.2 90 163-254 151-256 (339)
330 KOG0564 5,10-methylenetetrahyd 28.3 1.1E+02 0.0023 30.6 5.0 42 175-216 175-216 (590)
331 COG0041 PurE Phosphoribosylcar 28.2 1.1E+02 0.0023 25.8 4.3 59 2-77 8-66 (162)
332 cd06332 PBP1_aromatic_compound 28.2 91 0.002 27.7 4.4 45 170-216 175-221 (333)
333 cd03174 DRE_TIM_metallolyase D 28.2 97 0.0021 27.0 4.5 27 53-79 17-43 (265)
334 cd03309 CmuC_like CmuC_like. P 27.8 4.9E+02 0.011 24.1 9.9 23 174-196 227-250 (321)
335 cd03311 CIMS_C_terminal_like C 27.5 2.2E+02 0.0048 26.0 7.0 88 163-252 150-251 (332)
336 TIGR02311 HpaI 2,4-dihydroxyhe 27.3 62 0.0013 28.9 3.1 33 173-205 76-108 (249)
337 cd04724 Tryptophan_synthase_al 27.3 4.3E+02 0.0093 23.2 11.7 25 51-75 8-34 (242)
338 PF03447 NAD_binding_3: Homose 27.2 55 0.0012 25.0 2.4 29 52-80 67-95 (117)
339 PF00463 ICL: Isocitrate lyase 27.2 85 0.0018 31.3 4.2 33 180-212 377-410 (526)
340 cd00465 URO-D_CIMS_like The UR 27.1 4.5E+02 0.0097 23.4 11.6 68 173-251 213-285 (306)
341 PRK14046 malate--CoA ligase su 27.1 2.1E+02 0.0045 27.4 6.8 28 55-82 179-206 (392)
342 PF00977 His_biosynth: Histidi 26.7 70 0.0015 28.0 3.3 75 174-251 88-169 (229)
343 PRK08445 hypothetical protein; 26.7 1.5E+02 0.0032 27.9 5.6 73 171-251 144-233 (348)
344 TIGR02810 agaZ_gatZ D-tagatose 26.6 6.1E+02 0.013 24.7 11.0 104 52-191 21-127 (420)
345 cd00945 Aldolase_Class_I Class 26.3 2.4E+02 0.0052 22.9 6.4 68 170-250 15-86 (201)
346 COG0351 ThiD Hydroxymethylpyri 26.3 2.4E+02 0.0051 25.7 6.6 40 168-207 58-98 (263)
347 TIGR02990 ectoine_eutA ectoine 26.3 1.4E+02 0.0031 26.5 5.2 77 174-252 112-191 (239)
348 TIGR01740 pyrF orotidine 5'-ph 26.2 2E+02 0.0044 24.6 6.1 33 175-207 70-102 (213)
349 cd07939 DRE_TIM_NifV Streptomy 26.2 1.2E+02 0.0025 27.0 4.7 23 53-75 18-40 (259)
350 TIGR03217 4OH_2_O_val_ald 4-hy 26.2 5.4E+02 0.012 24.0 12.5 65 169-238 144-211 (333)
351 PRK08195 4-hyroxy-2-oxovalerat 26.2 5.4E+02 0.012 24.0 12.4 65 169-238 145-212 (337)
352 cd06828 PLPDE_III_DapDC Type I 26.1 1.5E+02 0.0031 27.5 5.5 59 177-238 90-159 (373)
353 cd02067 B12-binding B12 bindin 26.1 1.4E+02 0.0031 22.7 4.7 42 175-216 44-88 (119)
354 PRK05926 hypothetical protein; 26.1 1.1E+02 0.0025 28.9 4.8 76 170-253 168-260 (370)
355 PRK08673 3-deoxy-7-phosphohept 26.0 3.4E+02 0.0073 25.5 7.8 30 49-78 101-130 (335)
356 TIGR00736 nifR3_rel_arch TIM-b 26.0 87 0.0019 27.8 3.7 37 209-254 67-104 (231)
357 cd00502 DHQase_I Type I 3-dehy 25.9 2E+02 0.0044 24.8 6.0 43 171-217 79-121 (225)
358 PRK08005 epimerase; Validated 25.9 93 0.002 27.2 3.8 64 173-252 73-138 (210)
359 COG1831 Predicted metal-depend 25.8 5.3E+02 0.011 23.7 9.4 138 41-214 40-190 (285)
360 KOG0081 GTPase Rab27, small G 25.6 3.2E+02 0.007 23.3 6.8 68 160-237 103-176 (219)
361 PRK08444 hypothetical protein; 25.6 1E+02 0.0022 29.0 4.4 77 170-254 150-243 (353)
362 PRK09461 ansA cytoplasmic aspa 25.5 1.2E+02 0.0027 28.2 4.9 48 172-221 224-276 (335)
363 PRK15052 D-tagatose-1,6-bispho 25.5 6.4E+02 0.014 24.6 11.0 104 52-191 22-128 (421)
364 COG1004 Ugd Predicted UDP-gluc 25.4 6.4E+02 0.014 24.5 9.6 68 146-221 251-323 (414)
365 TIGR01036 pyrD_sub2 dihydrooro 25.3 5.6E+02 0.012 23.8 10.3 76 169-251 155-247 (335)
366 PRK09856 fructoselysine 3-epim 25.2 4.6E+02 0.01 22.8 10.4 29 162-191 123-151 (275)
367 cd00429 RPE Ribulose-5-phospha 25.1 1.1E+02 0.0024 25.5 4.2 18 170-187 14-31 (211)
368 PRK08575 5-methyltetrahydropte 25.1 2E+02 0.0042 26.7 6.1 84 164-257 157-249 (326)
369 PRK11815 tRNA-dihydrouridine s 25.1 1.5E+02 0.0032 27.6 5.3 66 182-254 36-102 (333)
370 PF04412 DUF521: Protein of un 25.0 1.2E+02 0.0026 29.2 4.7 56 161-217 270-328 (400)
371 smart00798 AICARFT_IMPCHas AIC 24.9 1.1E+02 0.0024 28.5 4.3 61 189-251 113-177 (311)
372 TIGR02637 RhaS rhamnose ABC tr 24.9 1.5E+02 0.0032 26.2 5.1 40 172-214 47-86 (302)
373 cd02940 DHPD_FMN Dihydropyrimi 24.8 2.3E+02 0.0049 25.8 6.4 70 173-251 118-203 (299)
374 PRK08318 dihydropyrimidine deh 24.8 2.1E+02 0.0044 27.4 6.4 69 174-251 119-203 (420)
375 PLN02363 phosphoribosylanthran 24.6 2.2E+02 0.0048 25.6 6.1 31 174-204 60-96 (256)
376 TIGR01093 aroD 3-dehydroquinat 24.5 2.4E+02 0.0051 24.5 6.2 78 178-260 89-168 (228)
377 PRK10415 tRNA-dihydrouridine s 24.4 97 0.0021 28.7 3.9 66 179-254 31-102 (321)
378 PF05369 MtmB: Monomethylamine 24.4 2E+02 0.0044 28.0 6.0 21 187-207 174-194 (457)
379 cd00635 PLPDE_III_YBL036c_like 24.4 1.3E+02 0.0028 25.9 4.5 64 186-250 93-159 (222)
380 COG3693 XynA Beta-1,4-xylanase 24.3 4.9E+02 0.011 24.6 8.3 50 165-216 201-257 (345)
381 PLN02235 ATP citrate (pro-S)-l 24.1 2.5E+02 0.0053 27.4 6.6 74 157-239 304-390 (423)
382 PRK10206 putative oxidoreducta 24.1 1.4E+02 0.0031 27.6 5.0 45 169-216 76-122 (344)
383 PF00072 Response_reg: Respons 24.1 1.2E+02 0.0025 22.0 3.7 37 178-214 40-76 (112)
384 PRK07360 FO synthase subunit 2 24.1 1.5E+02 0.0032 28.0 5.2 71 171-250 163-251 (371)
385 KOG1579 Homocysteine S-methylt 24.0 6E+02 0.013 23.8 10.1 150 56-264 145-313 (317)
386 PF00834 Ribul_P_3_epim: Ribul 23.9 81 0.0018 27.3 3.1 39 173-216 72-112 (201)
387 cd06340 PBP1_ABC_ligand_bindin 23.9 1.3E+02 0.0027 27.5 4.6 44 169-214 187-230 (347)
388 PRK13575 3-dehydroquinate dehy 23.8 2.4E+02 0.0052 25.0 6.2 77 180-261 96-176 (238)
389 PRK06552 keto-hydroxyglutarate 23.7 1.3E+02 0.0028 26.2 4.4 26 52-78 22-47 (213)
390 cd04823 ALAD_PBGS_aspartate_ri 23.7 4.8E+02 0.01 24.5 8.1 124 55-207 54-180 (320)
391 PRK13111 trpA tryptophan synth 23.6 1.9E+02 0.0042 25.9 5.6 16 172-187 30-45 (258)
392 PRK00748 1-(5-phosphoribosyl)- 23.6 1.5E+02 0.0032 25.5 4.8 41 176-219 91-131 (233)
393 TIGR03849 arch_ComA phosphosul 23.5 1.9E+02 0.0041 25.9 5.4 27 51-77 37-63 (237)
394 TIGR01919 hisA-trpF 1-(5-phosp 23.4 2.2E+02 0.0048 25.2 5.9 63 174-239 89-160 (243)
395 TIGR00736 nifR3_rel_arch TIM-b 23.3 2.1E+02 0.0046 25.3 5.7 65 172-248 152-219 (231)
396 COG3457 Predicted amino acid r 23.3 1E+02 0.0022 29.0 3.7 74 181-260 93-181 (353)
397 TIGR00676 fadh2 5,10-methylene 23.2 3.5E+02 0.0075 24.3 7.2 152 21-219 31-195 (272)
398 cd06818 PLPDE_III_cryptic_DSD 23.2 1.8E+02 0.0039 27.4 5.5 60 189-251 104-167 (382)
399 PRK07565 dihydroorotate dehydr 23.1 1E+02 0.0022 28.5 3.8 36 37-76 9-45 (334)
400 PRK00366 ispG 4-hydroxy-3-meth 23.0 3.3E+02 0.0071 26.0 7.0 120 56-217 83-209 (360)
401 PRK12457 2-dehydro-3-deoxyphos 23.0 71 0.0015 29.3 2.6 28 169-196 218-245 (281)
402 TIGR01417 PTS_I_fam phosphoeno 23.0 1.6E+02 0.0035 29.7 5.4 39 167-205 366-407 (565)
403 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.9 2.9E+02 0.0063 24.8 6.7 63 169-238 150-215 (275)
404 PRK04452 acetyl-CoA decarbonyl 22.9 6.3E+02 0.014 23.6 9.8 37 170-207 164-200 (319)
405 cd07944 DRE_TIM_HOA_like 4-hyd 22.9 2.8E+02 0.006 24.9 6.5 65 169-238 139-206 (266)
406 PLN02899 alpha-galactosidase 22.9 1.4E+02 0.0031 30.5 4.9 52 164-217 191-246 (633)
407 TIGR01093 aroD 3-dehydroquinat 22.6 1.1E+02 0.0024 26.6 3.8 49 173-222 17-70 (228)
408 cd00717 URO-D Uroporphyrinogen 22.6 5.9E+02 0.013 23.2 10.0 24 174-197 244-267 (335)
409 cd06359 PBP1_Nba_like Type I p 22.5 1.1E+02 0.0024 27.5 3.9 44 169-214 174-219 (333)
410 PF01136 Peptidase_U32: Peptid 22.5 1.3E+02 0.0029 25.8 4.2 43 170-219 4-46 (233)
411 PRK10550 tRNA-dihydrouridine s 22.4 6.2E+02 0.013 23.3 12.1 26 51-76 71-96 (312)
412 PRK14024 phosphoribosyl isomer 22.3 2.1E+02 0.0046 25.1 5.5 52 10-64 65-121 (241)
413 PRK00278 trpC indole-3-glycero 22.3 2.1E+02 0.0046 25.5 5.6 35 173-207 125-160 (260)
414 cd04723 HisA_HisF Phosphoribos 22.3 2.7E+02 0.0058 24.3 6.2 63 173-239 92-157 (233)
415 PF05167 DUF711: Uncharacteris 22.3 2.5E+02 0.0055 27.1 6.3 42 175-219 80-129 (399)
416 cd04741 DHOD_1A_like Dihydroor 22.1 5.9E+02 0.013 23.0 10.0 158 37-246 5-190 (294)
417 PRK08114 cystathionine beta-ly 22.1 1E+02 0.0022 29.5 3.7 41 174-214 140-184 (395)
418 PLN02161 beta-amylase 22.1 1.2E+02 0.0027 30.2 4.2 49 169-217 118-177 (531)
419 TIGR01544 HAD-SF-IE haloacid d 22.0 1.4E+02 0.003 27.3 4.3 34 51-84 2-38 (277)
420 PRK05222 5-methyltetrahydropte 21.9 1.9E+02 0.0041 30.3 5.8 80 163-252 179-266 (758)
421 KOG1576 Predicted oxidoreducta 21.8 1E+02 0.0022 28.5 3.4 28 52-80 52-79 (342)
422 PRK13209 L-xylulose 5-phosphat 21.8 5.5E+02 0.012 22.5 10.6 27 163-190 133-159 (283)
423 TIGR01105 galF UTP-glucose-1-p 21.8 93 0.002 28.4 3.2 54 21-78 5-59 (297)
424 cd02810 DHOD_DHPD_FMN Dihydroo 21.8 2.7E+02 0.0059 24.8 6.3 70 172-248 115-195 (289)
425 PRK07259 dihydroorotate dehydr 21.7 80 0.0017 28.6 2.8 40 37-80 8-48 (301)
426 PRK09282 pyruvate carboxylase 21.7 2.1E+02 0.0045 29.1 5.9 85 174-264 102-193 (592)
427 TIGR01108 oadA oxaloacetate de 21.7 1.7E+02 0.0036 29.7 5.2 85 174-264 97-188 (582)
428 cd07943 DRE_TIM_HOA 4-hydroxy- 21.6 3.2E+02 0.0069 24.2 6.6 65 168-238 141-208 (263)
429 cd02803 OYE_like_FMN_family Ol 21.6 6.1E+02 0.013 22.9 11.7 86 163-250 136-249 (327)
430 PRK15458 tagatose 6-phosphate 21.6 5.9E+02 0.013 24.9 8.6 106 52-193 25-133 (426)
431 PRK05581 ribulose-phosphate 3- 21.6 1.6E+02 0.0035 24.9 4.5 36 170-205 18-58 (220)
432 PF01168 Ala_racemase_N: Alani 21.5 1.3E+02 0.0029 25.4 4.0 61 187-250 88-151 (218)
433 PLN00197 beta-amylase; Provisi 21.4 1.3E+02 0.0028 30.3 4.3 49 169-217 128-187 (573)
434 TIGR00737 nifR3_yhdG putative 21.4 6.3E+02 0.014 23.0 12.4 25 52-76 72-96 (319)
435 TIGR01918 various_sel_PB selen 21.4 2.6E+02 0.0057 27.2 6.2 54 162-217 317-372 (431)
436 cd07585 nitrilase_7 Uncharacte 21.3 2.6E+02 0.0057 24.2 6.0 26 162-187 13-38 (261)
437 cd00411 Asparaginase Asparagin 21.2 1.8E+02 0.0039 27.0 5.0 47 172-220 224-273 (323)
438 COG3684 LacD Tagatose-1,6-bisp 21.2 4E+02 0.0087 24.5 6.9 41 172-214 190-235 (306)
439 PF01053 Cys_Met_Meta_PP: Cys/ 21.2 1.1E+02 0.0024 29.1 3.7 39 175-214 134-176 (386)
440 TIGR03253 oxalate_frc formyl-C 21.1 2.7E+02 0.0059 26.7 6.4 40 50-94 72-111 (415)
441 cd08210 RLP_RrRLP Ribulose bis 21.0 1.5E+02 0.0033 28.1 4.6 48 170-217 143-201 (364)
442 TIGR00561 pntA NAD(P) transhyd 21.0 3.1E+02 0.0066 27.4 6.8 36 171-206 98-148 (511)
443 PRK10773 murF UDP-N-acetylmura 21.0 1.8E+02 0.0039 28.0 5.2 21 166-186 369-389 (453)
444 PF10649 DUF2478: Protein of u 20.9 4.1E+02 0.009 22.2 6.6 71 130-217 55-131 (159)
445 PRK11858 aksA trans-homoaconit 20.9 1.5E+02 0.0032 28.1 4.5 22 54-75 25-46 (378)
446 cd07944 DRE_TIM_HOA_like 4-hyd 20.7 1.5E+02 0.0032 26.7 4.2 83 174-264 88-177 (266)
447 PRK03620 5-dehydro-4-deoxygluc 20.6 6.5E+02 0.014 22.8 10.7 23 53-75 26-48 (303)
448 cd02070 corrinoid_protein_B12- 20.6 1.9E+02 0.0042 24.6 4.8 18 53-70 9-26 (201)
449 PRK08134 O-acetylhomoserine am 20.5 1.2E+02 0.0025 29.4 3.8 39 174-214 142-184 (433)
450 cd02922 FCB2_FMN Flavocytochro 20.5 1.1E+02 0.0023 28.8 3.4 84 173-262 226-321 (344)
451 PF01207 Dus: Dihydrouridine s 20.4 70 0.0015 29.4 2.1 67 180-253 20-90 (309)
452 cd07938 DRE_TIM_HMGL 3-hydroxy 20.4 1.6E+02 0.0034 26.6 4.4 31 53-84 18-48 (274)
453 PLN02705 beta-amylase 20.3 1.4E+02 0.003 30.6 4.2 49 169-217 269-328 (681)
454 cd04735 OYE_like_4_FMN Old yel 20.3 3.7E+02 0.008 25.1 7.0 89 160-250 133-256 (353)
455 PRK08072 nicotinate-nucleotide 20.2 1.6E+02 0.0035 26.8 4.4 27 177-204 204-230 (277)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=2.9e-64 Score=466.88 Aligned_cols=258 Identities=75% Similarity=1.239 Sum_probs=228.1
Q ss_pred CchhHHHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhc
Q 024544 7 GTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEA 86 (266)
Q Consensus 7 ~~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~ 86 (266)
.|++.|++++++.++++||||||||+|+++|++.+.|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|++
T Consensus 7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~ 86 (335)
T PLN02489 7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES 86 (335)
T ss_pred hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence 47888999998555699999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHH
Q 024544 87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL 166 (266)
Q Consensus 87 ~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~ 166 (266)
+|++.+++++++++||++|++|+++|.+...... ....+....+++++|+|||||+|+++.+|+||+|+|++.++++++
T Consensus 87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~ 165 (335)
T PLN02489 87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGS-TSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL 165 (335)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence 9998788999999999999999988743210000 000001112457999999999999999999999999976899999
Q ss_pred HHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhc
Q 024544 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~av 246 (266)
+++|++|+++|+++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|.+|+++.+++..+.+..++++|
T Consensus 166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~i 245 (335)
T PLN02489 166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAV 245 (335)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999876579999999999999999999999999888764578999
Q ss_pred ccccCCcchhhhhheeeee
Q 024544 247 GINCTSPRFIHGLILSVRK 265 (266)
Q Consensus 247 GiNC~~p~~~~~~l~~l~~ 265 (266)
|+||++|+.+.++|+++++
T Consensus 246 GiNC~~p~~~~~~l~~l~~ 264 (335)
T PLN02489 246 GINCTPPRFIHGLILSIRK 264 (335)
T ss_pred EecCCCHHHHHHHHHHHHh
Confidence 9999999999999987754
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=8.7e-62 Score=445.36 Aligned_cols=235 Identities=54% Similarity=0.872 Sum_probs=216.1
Q ss_pred HHHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCC
Q 024544 11 FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (266)
Q Consensus 11 ~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~ 90 (266)
.|+++|++ ++++|+||||||+|+++|++...|+||+.+|+++||.|+++|++|++||||||+||||++|+.+|+++|++
T Consensus 3 ~~~~~l~~-~~~lilDGgmGT~L~~~g~~~~~~~ws~~~l~~~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~ 81 (304)
T PRK09485 3 PFKELLAQ-GPVLILDGALATELEARGCDLNDSLWSAKVLLENPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS 81 (304)
T ss_pred hHHHHhcc-CCEEEEeChHHHHHHHcCCCCCCcchhhhhhccChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC
Confidence 58888883 56999999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHh
Q 024544 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (266)
Q Consensus 91 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~ 170 (266)
.++++++|++||+||++|+.++. ..+++|+|||||+|.++.+|+||+|+|+ +++++++++|
T Consensus 82 ~~~~~~l~~~av~lA~~a~~~~~-----------------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~ 142 (304)
T PRK09485 82 EAEAEELIRRSVELAKEARDEFW-----------------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFH 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----------------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHH
Confidence 77899999999999999997651 1258999999999999999999999985 7999999999
Q ss_pred hhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
++|+++|.++|||+|+|||||++.|++++++++++..+++|||+||+++++++|++|+++++++..+.+...+++||+||
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC 222 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNC 222 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecC
Confidence 99999999999999999999999999999999996533699999999999999999999999999987544689999999
Q ss_pred CCcchhhhhheeeee
Q 024544 251 TSPRFIHGLILSVRK 265 (266)
Q Consensus 251 ~~p~~~~~~l~~l~~ 265 (266)
++|+++.++|+++++
T Consensus 223 ~~p~~~~~~l~~~~~ 237 (304)
T PRK09485 223 TAPELVTAAIAALRA 237 (304)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987643
No 3
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-60 Score=423.98 Aligned_cols=235 Identities=45% Similarity=0.722 Sum_probs=215.2
Q ss_pred HHHHHHhcCCeEEeecchhhhHhhhCCC-CCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCC
Q 024544 12 MTDFLQKCGGYSVVDGGFATELERHGAD-LNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS 90 (266)
Q Consensus 12 l~~~l~~~~~~lllDGg~gT~L~~~g~~-~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~ 90 (266)
.+.++...++++|+||||||+|+++|.+ .+.|+||+.+++++||+|+++|++||+||||||.|||||++...+..+ .+
T Consensus 9 ~~~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~~~~~s~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~-~~ 87 (317)
T KOG1579|consen 9 KKDILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSAEALASNPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEY-VE 87 (317)
T ss_pred hHHHHhccCcEEEEeChHHHHHHhhcccccCCCCCCchhhccChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhh-hh
Confidence 3444444589999999999999999998 668999999999999999999999999999999999999999999888 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHh
Q 024544 91 TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFH 170 (266)
Q Consensus 91 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~ 170 (266)
.++..++++..+++|+.||+++..+ .-+|+||+||+|+++++|+||+|+|+++.+++++++||
T Consensus 88 ~~~~~el~~~s~~~a~~Are~~~~~-----------------~~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~ 150 (317)
T KOG1579|consen 88 EEELIELYEKSVELADLARERLGEE-----------------TGYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFF 150 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc-----------------cceeeeecccccceecCCcccccccccccCHHHHHHHH
Confidence 6789999999999999999988542 12999999999999999999999999999999999999
Q ss_pred hhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
++|++.|.++|||+|+|||+|+..|++++++++++..+++|+||||+|.+++++++|+++++++..+.+..++.+|||||
T Consensus 151 k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC 230 (317)
T KOG1579|consen 151 KQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNC 230 (317)
T ss_pred HHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEEEEecc
Confidence 99999999999999999999999999999999999867899999999999999999999999998777655689999999
Q ss_pred CCcchhhhhheeee
Q 024544 251 TSPRFIHGLILSVR 264 (266)
Q Consensus 251 ~~p~~~~~~l~~l~ 264 (266)
++|..+.++++.|.
T Consensus 231 ~~~~~~~~~~~~L~ 244 (317)
T KOG1579|consen 231 VSPNFVEPLLKELM 244 (317)
T ss_pred CCchhccHHHHHHh
Confidence 99988888776553
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-60 Score=419.87 Aligned_cols=220 Identities=48% Similarity=0.783 Sum_probs=207.2
Q ss_pred CCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHH
Q 024544 20 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLR 99 (266)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~ 99 (266)
..++||||||+|||++||.++++|+||+.+|+++||+|+++|.+|++||||||+|+|||+++.++.+. .+.++.+++++
T Consensus 8 ~~vliLDGG~~tELe~rG~~l~~plWSa~~l~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~-~~~~~~~~l~~ 86 (300)
T COG2040 8 LSVLILDGGLATELERRGCDLSDPLWSALALVDEPEIVRNVHADFLRAGADIITTATYQATPEGFAER-VSEDEAKQLIR 86 (300)
T ss_pred CCEEEecCchhHHHHhcCCCCCchhhhhhhcccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHh-cchhHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999887 77788999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhh
Q 024544 100 RSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN 179 (266)
Q Consensus 100 ~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~ 179 (266)
.+|+||++||+.+..+ ...|+|||||||+++++ ||+|+|+. +.+.++.||++|+++|.+
T Consensus 87 ~sv~la~~ard~~g~~-----------------~~~iagsiGP~ga~~a~--Ey~g~Y~~--~~d~~~~fh~~rie~l~~ 145 (300)
T COG2040 87 RSVELARAARDAYGEE-----------------NQNIAGSLGPYGAALAD--EYRGDYGA--SQDALYKFHRPRIEALNE 145 (300)
T ss_pred HHHHHHHHHHHHhccc-----------------ccccceeccchhhhcCh--hhcCccCc--cHHHHHHHHHHHHHHHHh
Confidence 9999999999998532 34499999999999998 99999974 778889999999999999
Q ss_pred cCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcchhhhh
Q 024544 180 SGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGL 259 (266)
Q Consensus 180 ~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~~~~~~ 259 (266)
+|||+|.+||+|++.|+++++++++++ ++|+|||||++++++|++|+++.+++..+.+.+++.++||||++|+++..+
T Consensus 146 ag~Dlla~ETip~i~Ea~Aiv~l~~~~--s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~ 223 (300)
T COG2040 146 AGADLLACETLPNITEAEAIVQLVQEF--SKPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAA 223 (300)
T ss_pred CCCcEEeecccCChHHHHHHHHHHHHh--CCceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHH
Confidence 999999999999999999999999997 599999999999999999999999999988877899999999999999999
Q ss_pred heee
Q 024544 260 ILSV 263 (266)
Q Consensus 260 l~~l 263 (266)
|+.+
T Consensus 224 i~~l 227 (300)
T COG2040 224 IEEL 227 (300)
T ss_pred HHHH
Confidence 9865
No 5
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=3.5e-58 Score=421.35 Aligned_cols=221 Identities=49% Similarity=0.800 Sum_probs=172.5
Q ss_pred eEEeecchhhhHhhhCCCCCCcccccc-------ccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHH
Q 024544 22 YSVVDGGFATELERHGADLNDPLWSAK-------CLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (266)
Q Consensus 22 ~lllDGg~gT~L~~~g~~~~~~lws~~-------~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 94 (266)
|+||||||||+|+++|.+.++++||+. +++++|++|+++|++|++||||||+|||||+|+.+|+++|++.+.+
T Consensus 1 ililDGgmGT~L~~~g~~~~~~~~s~~~~~~~~~~~~~~p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 80 (305)
T PF02574_consen 1 ILILDGGMGTELERRGLDLNDPLWSALSHPWNELLNIENPELVRQIHRDYLEAGADIITTNTYQASRERLKEYGLSDEEA 80 (305)
T ss_dssp -CTT--EEHHCCHHHHHHHCTSS----TTT-GGTHHHH-HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGGGT-GGGCH
T ss_pred CEEeehhhHHHHHhCCcCccccccccccccchHhhhccCHHHHHHHHHHHHHCCCCeEEecCCcCchhhhhhcCCcHHHH
Confidence 689999999999999998888888744 6789999999999999999999999999999999999999987767
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhh
Q 024544 95 EALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRV 174 (266)
Q Consensus 95 ~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi 174 (266)
+++|++||++||+|+++|. .+++++|+|||||||+++. |++|+|+|. .+.++++++|++|+
T Consensus 81 ~~l~~~av~lA~~a~~~~~----------------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~--~~~~~~~~~~~~q~ 141 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYG----------------SGRKVLVAGSIGPYGAYLS-GSEYPGDYG--LSFEELRDFHREQA 141 (305)
T ss_dssp HHHHHHHHHHHHHHHTT-------------------TT-SEEEEEEE--S---------CTTCT--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc----------------CCCccEEEEEcccccccch-hhhcccccc--ccHHHHHHHHHHHH
Confidence 9999999999999997763 2446999999999999999 999999996 58899999999999
Q ss_pred HHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh-----hhhhhcccc
Q 024544 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-----EQVVAVGIN 249 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~-----~~~~avGiN 249 (266)
+.|.++|||+|+|||||++.|++++++++++. .++|+|+||++.+++++.+|+++.+++..++.. .++++||+|
T Consensus 142 ~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~-~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvN 220 (305)
T PF02574_consen 142 EALADAGVDLLLFETMPSLAEAKAALEAIKEV-TGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVN 220 (305)
T ss_dssp HHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHH-HHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEE
T ss_pred HHHHhcCCCEEEEecCcHHHHHHHHHHHHHhh-hhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcC
Confidence 99999999999999999999999999999993 259999999999999999999999999888765 489999999
Q ss_pred cCCcchhhhhhee
Q 024544 250 CTSPRFIHGLILS 262 (266)
Q Consensus 250 C~~p~~~~~~l~~ 262 (266)
|++|..+...|.+
T Consensus 221 C~~~~~~~~~l~~ 233 (305)
T PF02574_consen 221 CTSPPEIMKALLE 233 (305)
T ss_dssp SSS-HHHHHHHHH
T ss_pred CCCcHHHHhHHHH
Confidence 9987766665544
No 6
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=3.2e-54 Score=399.63 Aligned_cols=220 Identities=26% Similarity=0.361 Sum_probs=194.1
Q ss_pred chhHHHHHHHhcCCeEEeecchhhhHhhhCCCCC--CccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhh
Q 024544 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLN--DPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85 (266)
Q Consensus 8 ~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~--~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~ 85 (266)
|++.|.++|++ ++++||||||||+|+++|++.+ .++|+ +++||+|+++|++|++||||||+|||||+|+.+|.
T Consensus 1 ~~~~~~~~l~~-~~ililDGgmGTeL~~~G~~~~~~~~lws----i~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~ 75 (336)
T PRK07534 1 MTNALSDLLAE-RGVLLADGATGTNLFNMGLESGEAPELWN----EDHPDNITALHQGFVDAGSDIILTNSFGGTAARLK 75 (336)
T ss_pred CChHHHHHHhc-CCEEEEECHHHHHHHHCCCCCCCCchHhc----ccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHH
Confidence 45678999983 6799999999999999999876 47998 89999999999999999999999999999999998
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHH
Q 024544 86 AKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLET 165 (266)
Q Consensus 86 ~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e 165 (266)
.++. .++++++|++||+|||+|++++ +++++|+|||||+|+++.+ ++ .++.++
T Consensus 76 ~~~~-~~~~~~l~~~av~lAr~a~~~~------------------~~~~~VaGsIGP~g~~l~~-------~~-~~~~~e 128 (336)
T PRK07534 76 LHDA-QDRVHELNRAAAEIAREVADKA------------------GRKVIVAGSVGPTGEIMEP-------MG-ALTHAL 128 (336)
T ss_pred hcCc-HHHHHHHHHHHHHHHHHHHHhc------------------CCccEEEEecCCCccccCC-------CC-CCCHHH
Confidence 8775 4679999999999999998653 3468999999999998764 32 267888
Q ss_pred HHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh-hhhh
Q 024544 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVV 244 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~-~~~~ 244 (266)
++++|++|++.|.++|||+|+|||||++.|++++++++++. ++|||+||+++++++|.+|+++++++..+... .+++
T Consensus 129 ~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~ 206 (336)
T PRK07534 129 AVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPL 206 (336)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999985 59999999999999999999999999988752 2569
Q ss_pred hcccccCC-cchhhhhhe
Q 024544 245 AVGINCTS-PRFIHGLIL 261 (266)
Q Consensus 245 avGiNC~~-p~~~~~~l~ 261 (266)
+||+||++ |+++...+.
T Consensus 207 avGvNC~~gp~~~~~~l~ 224 (336)
T PRK07534 207 AFGANCGVGASDLLRTVL 224 (336)
T ss_pred EEEecCCCCHHHHHHHHH
Confidence 99999995 998855543
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-52 Score=373.17 Aligned_cols=232 Identities=28% Similarity=0.374 Sum_probs=202.1
Q ss_pred chhHHHHHHHhcCCeEEeecchhhhHhhhCCCCCC----ccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhh
Q 024544 8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLND----PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83 (266)
Q Consensus 8 ~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~----~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~ 83 (266)
..+.|.+.++ +++||+||||||+|++.|++..+ .--...+++++||.|.+||++|++||||||.||||++|...
T Consensus 4 ~~~~l~~~l~--~rVLv~DGAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~ 81 (311)
T COG0646 4 VNTQLREALK--ERVLVLDGAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIK 81 (311)
T ss_pred hhHHHHHHHH--cCEEEeechhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhh
Confidence 3456788888 89999999999999999987541 11134457999999999999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhH
Q 024544 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSL 163 (266)
Q Consensus 84 l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~ 163 (266)
|++|+++ +++.++|++|++|||+|++++. ..++.||+|||||.+.++.. +|++ .+++
T Consensus 82 lady~le-d~v~~in~~aa~iAR~aA~~~~----------------~~k~rfVaGsiGPt~k~~~~----~~~~--~v~f 138 (311)
T COG0646 82 LADYGLE-DKVYEINQKAARIARRAADEAG----------------DPKPRFVAGSIGPTNKTLSI----SPDF--AVTF 138 (311)
T ss_pred HhhhChH-HHHHHHHHHHHHHHHHHHhhcC----------------CCCceEEEEeccCcCCcCCc----CCcc--cccH
Confidence 9999997 5799999999999999998763 12689999999999865542 2322 4799
Q ss_pred HHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhc----CcccccceeeecCCCceeecCchHHHhhhHHhh
Q 024544 164 ETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (266)
Q Consensus 164 ~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~ 239 (266)
+++++.|++|++.|.+.|||+|+|||+.++.|+|+++.++++. +..+|+|+|.|+.+.|++++|++++++...+++
T Consensus 139 d~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~ 218 (311)
T COG0646 139 DELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH 218 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc
Confidence 9999999999999999999999999999999999999988764 346999999999999999999999999999988
Q ss_pred hhhhhhcccccC-Ccchhhhhheeeee
Q 024544 240 CEQVVAVGINCT-SPRFIHGLILSVRK 265 (266)
Q Consensus 240 ~~~~~avGiNC~-~p~~~~~~l~~l~~ 265 (266)
.++++||+||. +|+.|.+.|+.+..
T Consensus 219 -~~~~~vGlNCa~Gp~~m~~~l~~ls~ 244 (311)
T COG0646 219 -LGPDAVGLNCALGPDEMRPHLRELSR 244 (311)
T ss_pred -cCCcEEeeccccCHHHHHHHHHHHHh
Confidence 57999999998 79999999987653
No 8
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=3.3e-52 Score=432.66 Aligned_cols=240 Identities=23% Similarity=0.348 Sum_probs=210.7
Q ss_pred CCchhHHHHHHHhcCCeEEeecchhhhHhhhCCCCC---C---cccc-------ccccccCchhHHHHhhhhhhccccEE
Q 024544 6 NGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLN---D---PLWS-------AKCLVSSPHLVRKVHLDYLDAGANII 72 (266)
Q Consensus 6 ~~~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~---~---~lws-------~~~ll~~Pe~V~~iH~~Yl~AGAdiI 72 (266)
+++...|++.|+ ++++||||||||+|+++|++.+ + ++|+ ..+++++||+|++||++|++||||||
T Consensus 5 ~~~~~~l~~~L~--~riLIlDGAMGT~Lq~~gl~~~d~~g~~~~~ws~~l~~~~e~l~lt~Pe~I~~IH~~Yl~AGADII 82 (1229)
T PRK09490 5 SSRLAQLRALLA--ERILVLDGAMGTMIQRYKLEEADYRGERFADWPCDLKGNNDLLVLTQPDVIEAIHRAYLEAGADII 82 (1229)
T ss_pred hhHHHHHHHHHc--CCeEEEECcchHHHHHcCCChhhccccccccccccccCCchhhhcCCHHHHHHHHHHHHHHhCcee
Confidence 345556999998 8899999999999999998532 2 5565 36789999999999999999999999
Q ss_pred EechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccce--ecCC
Q 024544 73 ITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAY--LADG 150 (266)
Q Consensus 73 ~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~--l~~g 150 (266)
+||||++|+.+|.++|++ ++++++|++|+++||+|+++|..++ .++++||||||||+|.+ +.|+
T Consensus 83 ~TNTF~a~~~~L~~ygl~-~~~~eln~~av~LAreAa~~~~~~~-------------~~~~~~VAGSIGP~g~~~sl~p~ 148 (1229)
T PRK09490 83 ETNTFNATTIAQADYGME-SLVYELNFAAARLAREAADEWTAKT-------------PDKPRFVAGVLGPTNRTASISPD 148 (1229)
T ss_pred ecCCCCCCHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHhhhcc-------------CCCceEEEEecCCCCcccccCCC
Confidence 999999999999999997 5799999999999999998874321 24579999999999954 5689
Q ss_pred CccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhc----CcccccceeeecCC-Cceee
Q 024544 151 SEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFNSKD-GINVV 225 (266)
Q Consensus 151 seY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~Pv~iSf~~~~-~~~l~ 225 (266)
+||.| |+ .+++++++++|++|+++|+++|||+|++|||+++.|+++++.++++. +.++|||+||+|.+ +|+|+
T Consensus 149 ~e~pg-~~-~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~l 226 (1229)
T PRK09490 149 VNDPG-FR-NVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTL 226 (1229)
T ss_pred ccccc-cc-CCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccC
Confidence 99988 65 48999999999999999999999999999999999999999998864 45799999999964 79999
Q ss_pred cCchHHHhhhHHhhhhhhhhcccccC-Ccchhhhhheeee
Q 024544 226 SGDSILECASIADSCEQVVAVGINCT-SPRFIHGLILSVR 264 (266)
Q Consensus 226 ~G~~~~~a~~~~~~~~~~~avGiNC~-~p~~~~~~l~~l~ 264 (266)
+|+++++++..+.+ .++++||+||+ +|+.|.++|+.+.
T Consensus 227 sG~~~ea~~~~l~~-~~~~avGlNCs~GP~~m~~~l~~l~ 265 (1229)
T PRK09490 227 SGQTTEAFWNSLRH-AKPLSIGLNCALGADELRPYVEELS 265 (1229)
T ss_pred CCCcHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHH
Confidence 99999999888876 68999999999 6999999998775
No 9
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=1.5e-50 Score=401.36 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=196.3
Q ss_pred HHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCH
Q 024544 12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFST 91 (266)
Q Consensus 12 l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~ 91 (266)
|.+.|+ ++++||||||||+|+++|++.+.++ +.+++++||.|+++|++|++||||||+|||||+|+.+|+++|++
T Consensus 4 ~~~~l~--~~~lilDGgmGT~L~~~G~~~~~~~--~~~~l~~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~- 78 (612)
T PRK08645 4 LLERLK--ERVLIADGAMGTLLYSRGVPLDRCF--EELNLSHPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLE- 78 (612)
T ss_pred HHHHhc--CCeEEEECHHHHHHHHcCCCCCCCh--HHhhccCHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCch-
Confidence 677788 7899999999999999999876542 56789999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhh
Q 024544 92 EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHR 171 (266)
Q Consensus 92 ~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~ 171 (266)
++++++|++||+|||+|++ ++++|+|||||||++ ++|+. ++.++++++|+
T Consensus 79 ~~~~~l~~~av~lAr~a~~---------------------~~~~VagsiGP~g~~--------~~~~~-~~~~~~~~~~~ 128 (612)
T PRK08645 79 DKVKEINRAAVRLAREAAG---------------------DDVYVAGTIGPIGGR--------GPLGD-ISLEEIRREFR 128 (612)
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CCCeEEEeCCCCCCC--------CCCCC-CCHHHHHHHHH
Confidence 5799999999999999972 358999999999984 45664 78999999999
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~ 251 (266)
+|++.|.++|||+|++||||++.|++++++++++.+ ++|+|+||+++++++|++|+++++++..+.+ .++++||+||+
T Consensus 129 ~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~-~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~-~~~~avGiNC~ 206 (612)
T PRK08645 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT-DLPIIAQVAFHEDGVTQNGTSLEEALKELVA-AGADVVGLNCG 206 (612)
T ss_pred HHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC-CCcEEEEEEECCCCeeCCCCCHHHHHHHHHh-CCCCEEEecCC
Confidence 999999999999999999999999999999999865 4999999999999999999999999999876 46999999999
Q ss_pred C-cchhhhhheeee
Q 024544 252 S-PRFIHGLILSVR 264 (266)
Q Consensus 252 ~-p~~~~~~l~~l~ 264 (266)
+ |+.+.++|+++.
T Consensus 207 ~~p~~~~~~l~~l~ 220 (612)
T PRK08645 207 LGPYHMLEALERIP 220 (612)
T ss_pred CCHHHHHHHHHHHH
Confidence 5 999999997664
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=3e-50 Score=418.74 Aligned_cols=228 Identities=21% Similarity=0.289 Sum_probs=202.1
Q ss_pred CCeEEeecchhhhHhhhCCCCCCcccc------------ccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhcc
Q 024544 20 GGYSVVDGGFATELERHGADLNDPLWS------------AKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK 87 (266)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~lws------------~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~ 87 (266)
++++||||||||+||++|++.++++|+ +.+++++||+|++||++|++||||||+||||++|+.+|.++
T Consensus 3 ~rilvlDGamGT~Lq~~gl~~~d~~g~~~~~~~~~~~~~e~l~lt~Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~y 82 (1178)
T TIGR02082 3 QRILVLDGAMGTQLQSANLTEADFRGAEFTCHRELKGNNDILNLTKPEVIATIHRAYFEAGADIIETNTFNSTTISQADY 82 (1178)
T ss_pred CceEEEEChhHHHHHhCCCCccccCcccccccccccCCcHHhhcCCHHHHHHHHHHHHHHhchheecCCccCCHHHHhhC
Confidence 689999999999999999998889995 66789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEeccccccee--cCCCccccCCCCchhHHH
Q 024544 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYL--ADGSEYSGDYGDAVSLET 165 (266)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l--~~gseY~g~y~~~~~~~e 165 (266)
|++ ++++++|++|+++||+|+++|... .+++++|||||||+|.++ .++++|.| |++ +++++
T Consensus 83 g~~-~~~~eln~~av~lAr~Aa~~~~~~--------------~~~~~~VAGsIGP~g~~~~lgp~~~~~~-~~~-~t~de 145 (1178)
T TIGR02082 83 DLE-DLIYDLNFKGAKLARAVADEFTLT--------------PEKPRFVAGSMGPTNKTATLSPDVERPG-FRN-VTYDE 145 (1178)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHhhccc--------------CCCceEEEEEeCCCCCCccCCCccccCc-cCC-CCHHH
Confidence 997 579999999999999999876320 245799999999999754 34455544 764 89999
Q ss_pred HHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhc----Ccccccceeee-cCCCceeecCchHHHhhhHHhhh
Q 024544 166 LKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE----GITIPAWFSFN-SKDGINVVSGDSILECASIADSC 240 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~----~~~~Pv~iSf~-~~~~~~l~~G~~~~~a~~~~~~~ 240 (266)
++++|++|+++|+++|||+|++|||+++.|+++++.++++. +.++|||+|++ ++++|++++|+++++++..+.+
T Consensus 146 l~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~- 224 (1178)
T TIGR02082 146 LVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH- 224 (1178)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc-
Confidence 99999999999999999999999999999999999999863 34699999954 5678999999999999988876
Q ss_pred hhhhhcccccC-Ccchhhhhheeeee
Q 024544 241 EQVVAVGINCT-SPRFIHGLILSVRK 265 (266)
Q Consensus 241 ~~~~avGiNC~-~p~~~~~~l~~l~~ 265 (266)
.++++||+||+ +|+.|.++|+.+.+
T Consensus 225 ~~~~avGlNCs~gP~~m~~~l~~l~~ 250 (1178)
T TIGR02082 225 AGIDMIGLNCALGPDEMRPHLKHLSE 250 (1178)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHHHH
Confidence 68999999999 69999999987753
No 11
>PRK15063 isocitrate lyase; Provisional
Probab=94.68 E-value=0.54 Score=45.38 Aligned_cols=32 Identities=44% Similarity=0.463 Sum_probs=28.6
Q ss_pred hhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhh
Q 024544 173 RVLILANSGADLIAFET-IPNKLEAKAYAELLEE 205 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~ 205 (266)
|..++.+ |+|+|++|| .|+++|++.+++.++.
T Consensus 270 Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 270 RGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 6677887 999999998 9999999999998875
No 12
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.51 E-value=0.4 Score=44.09 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=33.8
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
+|.+++.++|+|++++|.+.+++|++.+++.+ ++|+++.++
T Consensus 170 ~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~~n~~ 210 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPILANIT 210 (292)
T ss_pred HHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEEEEec
Confidence 37888999999999999999999998888755 267766554
No 13
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.16 E-value=0.61 Score=41.64 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=32.0
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceee
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
|.+++.++|+|.+++++..+.++++.+.+. .+.|+.+..
T Consensus 165 Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~-----~~~Pl~~~~ 203 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLKDPEEIRAFAEA-----PDVPLNVNM 203 (243)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEe
Confidence 778899999999999999988888887765 247877654
No 14
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.08 E-value=0.51 Score=43.25 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=33.1
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
+|.+++.++|+|++++|.+.+.+|++.+++.+. +|+++.++
T Consensus 165 ~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~-----~Pl~~n~~ 205 (285)
T TIGR02317 165 ERAKAYVEAGADMIFPEALTSLEEFRQFAKAVK-----VPLLANMT 205 (285)
T ss_pred HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-----CCEEEEec
Confidence 378889999999999999999999887776542 67766654
No 15
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.75 E-value=0.92 Score=40.54 Aligned_cols=72 Identities=28% Similarity=0.234 Sum_probs=44.1
Q ss_pred eEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccc
Q 024544 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (266)
Q Consensus 134 ~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~ 213 (266)
++|.+-+|-+...+..-.-|++.+. +.+++.+ .-++..++.++|+|++++|.+ +.++++.+.+. .++|+.
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~~---~~~~~~~-ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~-----~~~P~~ 195 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQYR---GDEAGEQ-LIADALAYAPAGADLIVMECV-PVELAKQITEA-----LAIPLA 195 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeecc---CHHHHHH-HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHh-----CCCCEE
Confidence 5677777764432221112333321 3334433 445789999999999999987 77787777664 247876
Q ss_pred ee
Q 024544 214 FS 215 (266)
Q Consensus 214 iS 215 (266)
.-
T Consensus 196 ~~ 197 (240)
T cd06556 196 GI 197 (240)
T ss_pred EE
Confidence 53
No 16
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.66 E-value=0.76 Score=42.12 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=34.1
Q ss_pred hhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhhcCcccccce
Q 024544 173 RVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
|++++.++|+|.++++. .++.+|++.+++.++..-+++|+.+
T Consensus 174 Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 174 RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 68889999999999996 6999999999988875323578754
No 17
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.06 E-value=1.1 Score=41.18 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=32.8
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
+|.+++.++|+|++++|...+.+|++.+++.+. .|++..+.
T Consensus 169 ~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~-----~P~~~nv~ 209 (294)
T TIGR02319 169 RRSREYVAAGADCIFLEAMLDVEEMKRVRDEID-----APLLANMV 209 (294)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcC-----CCeeEEEE
Confidence 378889999999999999999999888877543 57655554
No 18
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.02 E-value=1.9 Score=39.17 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=50.0
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccc-------eeeecCCCceeecCchHHHhhhHHhh-----hh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW-------FSFNSKDGINVVSGDSILECASIADS-----CE 241 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~-------iSf~~~~~~~l~~G~~~~~a~~~~~~-----~~ 241 (266)
.+.+.++|+|.+-+|-- .|....++++.+.+ +||+ .+.... .|....|.+-+++-+.++. ..
T Consensus 99 ~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~g--IpV~gHiGltPq~a~~~-ggy~~qgrt~~~a~~~i~~A~a~e~A 172 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG---EWLVETVQMLTERG--VPVVGHLGLTPQSVNIL-GGYKVQGKDEEAAKKLLEDALALEEA 172 (263)
T ss_pred HHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCC--CCEEEecCCCceeEeec-CCeeecCCCHHHHHHHHHHHHHHHHc
Confidence 35556699999999964 45555567777755 8998 444432 2233346665544333321 25
Q ss_pred hhhhcccccCCcchhhhhhe
Q 024544 242 QVVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 242 ~~~avGiNC~~p~~~~~~l~ 261 (266)
+++++=+-|..++.+..+-+
T Consensus 173 GA~~ivlE~vp~~~a~~It~ 192 (263)
T TIGR00222 173 GAQLLVLECVPVELAAKITE 192 (263)
T ss_pred CCCEEEEcCCcHHHHHHHHH
Confidence 77788888887655544433
No 19
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=91.94 E-value=4.8 Score=36.57 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=88.6
Q ss_pred CchhHHHHhhhhhhccccEEEec-----------hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA-----------SYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSW 121 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn-----------Ty~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~ 121 (266)
++|.-.++-+.-.++|||+|+-- |=|.+..+--+.|++. .+..++.++++++.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~-------~~~lel~~~~r~~~--------- 92 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTL-------EDTLELVEEIRAKG--------- 92 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHhcC---------
Confidence 34577888888899999999753 3333333333334443 34556666665431
Q ss_pred CCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHH
Q 024544 122 DFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAE 201 (266)
Q Consensus 122 ~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~ 201 (266)
.+.++.+-+-.-|. + .|+ +..|+ +.+.++|||.+++=-+| ++|......
T Consensus 93 --------~~~Pivlm~Y~Npi---~--------~~G-------ie~F~----~~~~~~GvdGlivpDLP-~ee~~~~~~ 141 (265)
T COG0159 93 --------VKVPIVLMTYYNPI---F--------NYG-------IEKFL----RRAKEAGVDGLLVPDLP-PEESDELLK 141 (265)
T ss_pred --------CCCCEEEEEeccHH---H--------Hhh-------HHHHH----HHHHHcCCCEEEeCCCC-hHHHHHHHH
Confidence 23345444422221 1 121 22233 34667888888888888 556677777
Q ss_pred HHhhcCcccccceeeecCC-----------------------CceeecCchHHHhhhHHhhh-hhhhhcccccCCcchhh
Q 024544 202 LLEEEGITIPAWFSFNSKD-----------------------GINVVSGDSILECASIADSC-EQVVAVGINCTSPRFIH 257 (266)
Q Consensus 202 a~~~~~~~~Pv~iSf~~~~-----------------------~~~l~~G~~~~~a~~~~~~~-~~~~avGiNC~~p~~~~ 257 (266)
.+++.+.+.-..++-+..+ +.+...-..+.+.++.+++. .-+.++|+-=+.|+++.
T Consensus 142 ~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~ 221 (265)
T COG0159 142 AAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAA 221 (265)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHH
Confidence 7776553222222222221 11111112355666666542 35677888888888887
Q ss_pred hhhe
Q 024544 258 GLIL 261 (266)
Q Consensus 258 ~~l~ 261 (266)
++.+
T Consensus 222 ~v~~ 225 (265)
T COG0159 222 QVAE 225 (265)
T ss_pred HHHH
Confidence 7665
No 20
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.59 E-value=2.2 Score=38.02 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=66.0
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcccc
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (266)
.|.-|.+.-+.|.+||+--|.---..++. . ...-++.+ ....=++-|++++. ..
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~-~-~~~l~~~e----e~~~kI~Aa~~a~~--------------------~~ 136 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGH-G-GKQLVSPE----EMVAKIRAAVDARR--------------------DP 136 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTT-S-TT-B--HH----HHHHHHHHHHHHHS--------------------ST
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCC-C-CCceeCHH----HHHHHHHHHHHhcc--------------------CC
Confidence 38899999999999998755444433331 1 01112322 22233445555542 12
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCccccc
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv 212 (266)
..+|.+-.--+.. .....+|. -+|.+++.++|+|.+++|.+.+.+|++.+++.+. .|+
T Consensus 137 ~~~I~ARTDa~~~-------------~~~~~dea----I~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-----~Pl 194 (238)
T PF13714_consen 137 DFVIIARTDAFLR-------------AEEGLDEA----IERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD-----GPL 194 (238)
T ss_dssp TSEEEEEECHHCH-------------HHHHHHHH----HHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS-----SEE
T ss_pred eEEEEEecccccc-------------CCCCHHHH----HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-----CCE
Confidence 2555553222110 01233333 3478899999999999999999999888877762 676
Q ss_pred ceee
Q 024544 213 WFSF 216 (266)
Q Consensus 213 ~iSf 216 (266)
.+..
T Consensus 195 ~v~~ 198 (238)
T PF13714_consen 195 NVNP 198 (238)
T ss_dssp EEET
T ss_pred EEEc
Confidence 5544
No 21
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.54 E-value=2.7 Score=38.41 Aligned_cols=65 Identities=17% Similarity=0.037 Sum_probs=43.5
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+++.+.++.+.+.|+|.|.+- |. -.+.++..+++.+++.-++ +-+.+-+.++ .|..+..++..+.
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hn~----~Gla~AN~laA~~ 222 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA--ERLAGHFHDT----YGQALANIYASLE 222 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC--CeEEEEecCC----CCcHHHHHHHHHH
Confidence 455666777888999998776 43 3566777888888764222 3457777765 4766766666554
No 22
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.29 E-value=3.2 Score=37.44 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=58.5
Q ss_pred eEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccc
Q 024544 134 VLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (266)
Q Consensus 134 ~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~ 213 (266)
.+|.+.+ |||. |.. +.+++.+. -++.+.++||+.+-+|-- .|....++++.+.+ +||+
T Consensus 74 p~viaD~-~fg~-----------y~~--~~~~av~~---a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~ag--ipV~ 131 (254)
T cd06557 74 ALVVADM-PFGS-----------YQT--SPEQALRN---AARLMKEAGADAVKLEGG---AEVAETIRALVDAG--IPVM 131 (254)
T ss_pred CeEEEeC-CCCc-----------ccC--CHHHHHHH---HHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcC--CCee
Confidence 3455777 7765 321 34444332 234555699999999965 47777778887765 8888
Q ss_pred eeeecCC------CceeecCchH---HHhhhHHh--hhhhhhhcccccCCcchhhhh
Q 024544 214 FSFNSKD------GINVVSGDSI---LECASIAD--SCEQVVAVGINCTSPRFIHGL 259 (266)
Q Consensus 214 iSf~~~~------~~~l~~G~~~---~~a~~~~~--~~~~~~avGiNC~~p~~~~~~ 259 (266)
--+-+.+ ++....|.+- +++++.+. ...|++++=+-|...+.+..+
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i 188 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPAELAKEI 188 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHH
Confidence 3333222 1222234333 33333322 125778888888854444433
No 23
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.00 E-value=7 Score=34.08 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=78.3
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (266)
-.++.++...+....+|+++|....-..........+.+.++..+....+++.|++. +
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~----------------------g 121 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL----------------------G 121 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT----------------------T
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc----------------------C
Confidence 355667776777788999988766443332333444655444444444444444432 2
Q ss_pred cceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEee-ccc--hhhhHHHHHHHHhhcCc
Q 024544 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGI 208 (266)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~ 208 (266)
.. | ++++.- .+. .+.+++.+ .++.+.+.|+|.|.+- |+. .+.++..+++.+++.
T Consensus 122 ~~--v--~~~~~~---------~~~----~~~~~~~~----~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~-- 178 (237)
T PF00682_consen 122 YE--V--AFGCED---------ASR----TDPEELLE----LAEALAEAGADIIYLADTVGIMTPEDVAELVRALREA-- 178 (237)
T ss_dssp SE--E--EEEETT---------TGG----SSHHHHHH----HHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHH--
T ss_pred Cc--e--EeCccc---------ccc----ccHHHHHH----HHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHh--
Confidence 22 2 333311 111 24444444 4566777799988776 543 466777788888874
Q ss_pred ccc-cceeeecCCCceeecCchHHHhhhHHh
Q 024544 209 TIP-AWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 209 ~~P-v~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.| +-+.|-+.++ .|..+..++..+.
T Consensus 179 -~~~~~l~~H~Hnd----~Gla~An~laA~~ 204 (237)
T PF00682_consen 179 -LPDIPLGFHAHND----LGLAVANALAALE 204 (237)
T ss_dssp -STTSEEEEEEBBT----TS-HHHHHHHHHH
T ss_pred -ccCCeEEEEecCC----ccchhHHHHHHHH
Confidence 34 7778877765 4776777766665
No 24
>PLN02591 tryptophan synthase
Probab=90.87 E-value=6.5 Score=35.36 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=50.8
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC-------------------Ccee----ecCchH
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD-------------------GINV----VSGDSI 230 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~-------------------~~~l----~~G~~~ 230 (266)
++.+.++|||.+++=-+| ++|.....+.+++.+.+.-..++-+..+ .|.+ ..-..+
T Consensus 99 ~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~ 177 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRV 177 (250)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhH
Confidence 355667888888888777 4777777777777653222222222211 1111 111334
Q ss_pred HHhhhHHhhh-hhhhhcccccCCcchhhhhhe
Q 024544 231 LECASIADSC-EQVVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 231 ~~a~~~~~~~-~~~~avGiNC~~p~~~~~~l~ 261 (266)
.+.+..+++. .-+.++|+-++.|+++..+++
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~ 209 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAG 209 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHh
Confidence 5555666542 346778999998888877654
No 25
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=1.5 Score=41.37 Aligned_cols=99 Identities=26% Similarity=0.333 Sum_probs=64.3
Q ss_pred hhhccccEEEec-h-hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecc
Q 024544 64 YLDAGANIIITA-S-YQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVG 141 (266)
Q Consensus 64 Yl~AGAdiI~Tn-T-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiG 141 (266)
=+++|||.|-.- + |.+.... ..++.++ ++.+|++|+++ +++++|+...=
T Consensus 22 ai~~GADaVY~G~~~~~~R~~a---~nfs~~~----l~e~i~~ah~~----------------------gkk~~V~~N~~ 72 (347)
T COG0826 22 AIAAGADAVYIGEKEFGLRRRA---LNFSVED----LAEAVELAHSA----------------------GKKVYVAVNTL 72 (347)
T ss_pred HHHcCCCEEEeCCccccccccc---ccCCHHH----HHHHHHHHHHc----------------------CCeEEEEeccc
Confidence 367899977554 3 4433222 2355433 67788888874 56788888544
Q ss_pred cccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeec
Q 024544 142 SYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 142 P~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
+... ..+. ..+.++.|.+.|||.|++- + .+++..+++.++++|+.+|...
T Consensus 73 ~~~~----------------~~~~----~~~~l~~l~e~GvDaviv~------D-pg~i~l~~e~~p~l~ih~S~q~ 122 (347)
T COG0826 73 LHND----------------ELET----LERYLDRLVELGVDAVIVA------D-PGLIMLARERGPDLPIHVSTQA 122 (347)
T ss_pred cccc----------------hhhH----HHHHHHHHHHcCCCEEEEc------C-HHHHHHHHHhCCCCcEEEeeeE
Confidence 4322 1112 4446778889999999954 2 4677788887778999998865
No 26
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.43 E-value=2.8 Score=38.03 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=45.9
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceee--ecC----CCceeecCchHH---HhhhHHh--hhhh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF--NSK----DGINVVSGDSIL---ECASIAD--SCEQ 242 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf--~~~----~~~~l~~G~~~~---~a~~~~~--~~~~ 242 (266)
++.+.++||+.+-+|-- .|....++++.+.+ +||+--+ +-. .++...-|.+-+ ++++... +..|
T Consensus 100 ~r~~~~aGa~aVkiEdg---~~~~~~I~al~~ag--IpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAG 174 (264)
T PRK00311 100 GRLMKEAGAHAVKLEGG---EEVAETIKRLVERG--IPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAG 174 (264)
T ss_pred HHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCC--CCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCC
Confidence 34555699999999965 46666677777655 8886222 111 112233454433 3333222 1257
Q ss_pred hhhcccccCCcchhhhh
Q 024544 243 VVAVGINCTSPRFIHGL 259 (266)
Q Consensus 243 ~~avGiNC~~p~~~~~~ 259 (266)
++++=+-|...+.+..+
T Consensus 175 A~~i~lE~v~~~~~~~i 191 (264)
T PRK00311 175 AFALVLECVPAELAKEI 191 (264)
T ss_pred CCEEEEcCCCHHHHHHH
Confidence 78888888854444443
No 27
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=89.78 E-value=8.2 Score=35.67 Aligned_cols=153 Identities=21% Similarity=0.223 Sum_probs=92.6
Q ss_pred HhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEe
Q 024544 60 VHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAAS 139 (266)
Q Consensus 60 iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGs 139 (266)
--+..++-|+|+|.-=|++-. .+ .++|+..++++-++- ...-|+.+.|+
T Consensus 148 q~~~Li~gG~D~iLiET~~D~-----------l~----~KaA~~a~~~~~~~~----------------~~~LPv~~s~T 196 (311)
T COG0646 148 QVEGLIDGGADLILIETIFDT-----------LN----AKAAVFAAREVFEEL----------------GVRLPVMISGT 196 (311)
T ss_pred HHHHHHhCCCcEEEEehhccH-----------HH----HHHHHHHHHHHHHhc----------------CCcccEEEEEE
Confidence 344566779999999998633 11 245666666654321 13458999999
Q ss_pred cccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 140 VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 140 iGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
+-..|.++. | .+. .+++ ..+...|+|.+-+-.-.-..+++..++-+.+. -..+||+.-.
T Consensus 197 i~~sG~tl~------G-----q~~---~a~~----~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~---~~~~vs~~PN 255 (311)
T COG0646 197 ITDSGRTLS------G-----QTI---EAFL----NSLEHLGPDAVGLNCALGPDEMRPHLRELSRI---ADAFVSVYPN 255 (311)
T ss_pred EecCceecC------C-----CcH---HHHH----HHhhccCCcEEeeccccCHHHHHHHHHHHHhc---cCceEEEeCC
Confidence 999887664 1 122 2333 34566789999998877788888888777653 3456666432
Q ss_pred CC------ceeecCchHHHhhhHHh---hhhhhhhcccccC-Ccchhhhhheeee
Q 024544 220 DG------INVVSGDSILECASIAD---SCEQVVAVGINCT-SPRFIHGLILSVR 264 (266)
Q Consensus 220 ~~------~~l~~G~~~~~a~~~~~---~~~~~~avGiNC~-~p~~~~~~l~~l~ 264 (266)
-+ +++-.-.+++.....+. +...+..||==|. .|+|+..+.+.++
T Consensus 256 AGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~v~ 310 (311)
T COG0646 256 AGLPNAFGERAVYDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEAVK 310 (311)
T ss_pred CCCCcccCCccccCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHHhc
Confidence 11 11111234444444443 2233556665564 5999988776554
No 28
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.06 E-value=0.89 Score=42.50 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=55.9
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC------------ceeecC-----chHHH
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------INVVSG-----DSILE 232 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~------------~~l~~G-----~~~~~ 232 (266)
--.|+..|.++|+|++- =|+|+.++++++-+..+.. ++|++.-+-|+-. -++..| +-+.+
T Consensus 36 tv~QI~~L~~aGceiVR-vavp~~~~A~al~~I~~~~--~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~ 112 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVR-VTVPDRESAAAFEAIKEGT--NVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRD 112 (346)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHhCC--CCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHH
Confidence 44589999999999998 4899998888877765543 5898887777431 123333 34555
Q ss_pred hhhHHhhhhhhhhcccccCC
Q 024544 233 CASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 233 a~~~~~~~~~~~avGiNC~~ 252 (266)
.+..+....-+.=||+|+.+
T Consensus 113 vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 113 VVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HHHHHHHCCCCEEEecCCCC
Confidence 55555543445679999986
No 29
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=89.00 E-value=7.6 Score=36.65 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=41.2
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCccccc-ceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPA-WFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv-~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+..+.++.+.+.|+|-|.+= |+ -++.++..+++.+++. .|. -+.|-+.++ .|..+..++..+.
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~---~~~~~i~~H~Hnd----~GlA~AN~lAA~~ 264 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV---VPVDKLAVHFHDT----YGQALANILVSLQ 264 (347)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh---CCCCeEEEEECCC----CChHHHHHHHHHH
Confidence 34445567788999988665 43 4567888888888763 332 367777765 4666666665554
No 30
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=88.46 E-value=5.6 Score=37.28 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=54.6
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCccccc
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv 212 (266)
..+|.+.+ |+|+ |. .+.+++.+. -.+.+.++|+|.+=+|--. .+...+++.+-+.+ +||
T Consensus 96 ~a~vVaDm-PfgS-----------Y~--~s~e~av~n---A~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~G--IPV 154 (332)
T PLN02424 96 RPLLVGDL-PFGS-----------YE--SSTDQAVES---AVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEAG--IAV 154 (332)
T ss_pred CCEEEeCC-CCCC-----------CC--CCHHHHHHH---HHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHcC--CCE
Confidence 45777766 4554 42 244554432 2344567999999999652 33334455555544 899
Q ss_pred ce--eeecCC----CceeecCchHHHhhhHHhh-----hhhhhhcccccCCcchh
Q 024544 213 WF--SFNSKD----GINVVSGDSILECASIADS-----CEQVVAVGINCTSPRFI 256 (266)
Q Consensus 213 ~i--Sf~~~~----~~~l~~G~~~~~a~~~~~~-----~~~~~avGiNC~~p~~~ 256 (266)
+- -++-.. .|.=..|.+-+++...++. ..|++++=+-|......
T Consensus 155 ~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la 209 (332)
T PLN02424 155 MGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAPVA 209 (332)
T ss_pred EEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHH
Confidence 82 222111 1111135554444333321 25777777788764433
No 31
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.05 E-value=14 Score=30.59 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=20.8
Q ss_pred CchhHHHHhhhhhhccccEEEech
Q 024544 53 SPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
+.+.++++.+..+++|++.|.++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 777888999999999999888875
No 32
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.00 E-value=1 Score=38.03 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=41.6
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|++..+++|+|.|.+.+|+ +++++.+++.+++.++. +.+.++ .|-+++.+..+.. .+++.|++-+
T Consensus 92 e~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~--v~ie~S--------GGI~~~ni~~ya~--~gvD~isvg~ 156 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR--VKIEAS--------GGITLENIAEYAK--TGVDVISVGS 156 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT--SEEEEE--------SSSSTTTHHHHHH--TT-SEEEECH
T ss_pred HHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc--EEEEEE--------CCCCHHHHHHHHh--cCCCEEEcCh
Confidence 3444556899999999996 68999999988876533 333331 3556655555544 4788887765
No 33
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=87.74 E-value=3.7 Score=39.30 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCeEEeec-cchhhhHHHHHHHHhhcCcc
Q 024544 182 ADLIAFET-IPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 182 vD~i~~ET-~~~~~E~~a~~~a~~~~~~~ 209 (266)
.|++|+|| -|++++++...+++++.-|+
T Consensus 284 aDl~W~ET~~Pdle~ak~Fae~Ih~~~P~ 312 (433)
T COG2224 284 ADLLWCETSTPDLEEARQFAEAIHAKYPG 312 (433)
T ss_pred cceEEEecCCCCHHHHHHHHHHHHHhCCc
Confidence 59999997 79999999999999985433
No 34
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.01 E-value=0.84 Score=41.80 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.2
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHh
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLE 204 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~ 204 (266)
+|+.+.+++|+|+|+.|-+.+.+|.+..+++++
T Consensus 170 ~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~ 202 (289)
T COG2513 170 ERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC
Confidence 378889999999999999999999999998877
No 35
>PRK12677 xylose isomerase; Provisional
Probab=85.66 E-value=14 Score=35.24 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=38.3
Q ss_pred hHHHHHHHhhhhhHHhh----hcC--CCeEEeeccchh-------hhHHHHHHHHhhcCcccccceeeecCCCceeecCc
Q 024544 162 SLETLKEFHRRRVLILA----NSG--ADLIAFETIPNK-------LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGD 228 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~----~~g--vD~i~~ET~~~~-------~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~ 228 (266)
+.++..+.+.+-++.+. +.| |. |++|..|.. .....++..+++.+ -|-.+.++++-......|+
T Consensus 147 d~~~a~~~~~eaL~~l~~~A~~~G~gV~-laIEpkp~ep~~~~~l~t~~~al~li~~lg--~~~~vGv~lD~gH~~m~g~ 223 (384)
T PRK12677 147 DVRAALDRYREAIDLLAAYVKDQGYDLR-FALEPKPNEPRGDILLPTVGHALAFIATLE--HPEMVGLNPEVGHEQMAGL 223 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEccCCCCCCCCeeeCCHHHHHHHHHHhC--CCccEEEeeechHHHhcCC
Confidence 44555555555444443 334 65 677987542 23344455555543 3433444444333345687
Q ss_pred hHHHhhhHH
Q 024544 229 SILECASIA 237 (266)
Q Consensus 229 ~~~~a~~~~ 237 (266)
++..++...
T Consensus 224 n~~~~i~~~ 232 (384)
T PRK12677 224 NFTHGIAQA 232 (384)
T ss_pred CHHHHHHHH
Confidence 877776553
No 36
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=84.94 E-value=2.2 Score=40.21 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC------------ceeecCc------hH
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG------------INVVSGD------SI 230 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~------------~~l~~G~------~~ 230 (266)
.--.|+..|.++|+|++- =|+|+.++++++-+..+.. ++|++.-+-|+.. -++..|. -+
T Consensus 43 atv~Qi~~L~~aGceiVR-vav~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v 119 (360)
T PRK00366 43 ATVAQIKRLARAGCEIVR-VAVPDMEAAAALPEIKKQL--PVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDERV 119 (360)
T ss_pred HHHHHHHHHHHcCCCEEE-EccCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHH
Confidence 345589999999999998 4899998888877766654 4898887766541 1333342 34
Q ss_pred HHhhhHHhhhhhhhhcccccCC
Q 024544 231 LECASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 231 ~~a~~~~~~~~~~~avGiNC~~ 252 (266)
.+.+..+.+..-+.=||+|+.+
T Consensus 120 ~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 120 REVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHHHHHHHCCCCEEEecCCcc
Confidence 4444444443345679999986
No 37
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=84.67 E-value=19 Score=36.44 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=87.7
Q ss_pred chhHHHHhhh----hhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCc
Q 024544 54 PHLVRKVHLD----YLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (266)
Q Consensus 54 Pe~V~~iH~~----Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (266)
.+.+++.|+. +.++|+|+|.--|+..- ++++ .+++.+++.
T Consensus 120 ~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~-----------~Ea~----a~~~a~~~~--------------------- 163 (612)
T PRK08645 120 LEEIRREFREQIDALLEEGVDGLLLETFYDL-----------EELL----LALEAAREK--------------------- 163 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEccCCH-----------HHHH----HHHHHHHHh---------------------
Confidence 3555555544 44789999999888533 2232 344444432
Q ss_pred cccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcc
Q 024544 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (266)
...+++|.-++-+-|. +.+| .+.+++.... .+.++|.+.+........+..+++.++... +
T Consensus 164 ~~~p~~~Sf~~~~~g~-l~~G----------~~~~~~~~~~-------~~~~~~avGiNC~~~p~~~~~~l~~l~~~~-~ 224 (612)
T PRK08645 164 TDLPIIAQVAFHEDGV-TQNG----------TSLEEALKEL-------VAAGADVVGLNCGLGPYHMLEALERIPIPE-N 224 (612)
T ss_pred CCCcEEEEEEECCCCe-eCCC----------CCHHHHHHHH-------HhCCCCEEEecCCCCHHHHHHHHHHHHhcc-C
Confidence 1257888888866443 3322 3455544432 346799999998877778888887776532 4
Q ss_pred cccceeeec----CCCceeecCchHHHhhhHH---hhhhhhhhcccccC-Ccchhhhhheee
Q 024544 210 IPAWFSFNS----KDGINVVSGDSILECASIA---DSCEQVVAVGINCT-SPRFIHGLILSV 263 (266)
Q Consensus 210 ~Pv~iSf~~----~~~~~l~~G~~~~~a~~~~---~~~~~~~avGiNC~-~p~~~~~~l~~l 263 (266)
+|+.+--.. .+++......+.+.....+ .+ .++..||==|. .|+++..+-+.+
T Consensus 225 ~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~-~Ga~iiGGCCgt~P~hI~~la~~l 285 (612)
T PRK08645 225 APLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVE-QGVRLIGGCCGTTPEHIRAMARAL 285 (612)
T ss_pred ceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHH-hCCCEEeEecCCCHHHHHHHHHHh
Confidence 566643221 1112211222333333333 33 47777887774 798887765544
No 38
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=84.20 E-value=16 Score=33.09 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=41.2
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|.|.+- |+ ..+.++...++.+++.-++ +-++|-+.++ .|..+..++..+.
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd----~GlA~AN~laA~~ 216 (274)
T cd07938 150 RVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDT----RGQALANILAALE 216 (274)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCC----CChHHHHHHHHHH
Confidence 44445566777899988765 33 4567788888888764212 5567777765 4665666555554
No 39
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=83.98 E-value=6 Score=36.15 Aligned_cols=162 Identities=25% Similarity=0.271 Sum_probs=80.6
Q ss_pred CchhHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 024544 53 SPHLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (266)
Q Consensus 53 ~Pe~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (266)
..+.+++.|+ .++++|+|+|.--|+..- . ++ +.+++.+++.
T Consensus 129 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~---------~--E~----~aa~~a~~~~-------------------- 173 (305)
T PF02574_consen 129 SFEELRDFHREQAEALADAGVDLLLFETMPSL---------A--EA----KAALEAIKEV-------------------- 173 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-C---------S--CH----HHHHHHHHHH--------------------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEecCcHH---------H--HH----HHHHHHHHhh--------------------
Confidence 4457888885 466889998888887411 1 12 2233333331
Q ss_pred ccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCc
Q 024544 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI 208 (266)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~ 208 (266)
.+.+++|.-++-+-+. +.+| .+..+....-....+.+ +.++|.|.+....-.....++.+..+...
T Consensus 174 -~~~p~~is~~~~~~~~-l~~g----------~~~~~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~~~- 239 (305)
T PF02574_consen 174 -TGLPVWISFSCKDSGR-LRDG----------TSLEDAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSATH- 239 (305)
T ss_dssp -HHCCSSEEE-EEEEES--TCT----------TBCTTSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHHHT-
T ss_pred -hhhhceeccchhhhcc-ccCC----------CCHHHHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhccC-
Confidence 2346777777765443 3222 12233333333333444 68999999998887777777777766642
Q ss_pred ccccceeeec---CCCceeec--CchHHH----hhhHHhhhhhhhhcccccC-Ccchhhhhheeee
Q 024544 209 TIPAWFSFNS---KDGINVVS--GDSILE----CASIADSCEQVVAVGINCT-SPRFIHGLILSVR 264 (266)
Q Consensus 209 ~~Pv~iSf~~---~~~~~l~~--G~~~~~----a~~~~~~~~~~~avGiNC~-~p~~~~~~l~~l~ 264 (266)
++|+++-=.. .+..+.-. ...+.+ .+..... .++..||==|. .|+|+..+=+.++
T Consensus 240 ~~~l~vyPNsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~iiGGCCGt~P~hI~al~~~l~ 304 (305)
T PF02574_consen 240 DIPLIVYPNSGEPYDVGKVWSETPEDFAPEWAEFVKEWVE-AGARIIGGCCGTTPEHIRALAKALD 304 (305)
T ss_dssp -SEEEEE--SBS-TTSSGGSTTTTTSHGGG-HHHHHHHHH-HHHCEE---TT--HHHHHHHHHHTH
T ss_pred CceEEEecCCCCCcccccccccchhhhHHHHHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHHHhc
Confidence 4566543221 01111111 122222 2222222 46677887774 6999988766554
No 40
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=83.96 E-value=2.4 Score=39.65 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=58.0
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC-----------------CceeecCchHHH
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD-----------------GINVVSGDSILE 232 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~-----------------~~~l~~G~~~~~ 232 (266)
--.|+..|.++|+|++- =|+|+.+.+.++-+..++. ++|++.-|-|+. .|+.-.+.-+.+
T Consensus 38 Tv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQRL--NVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 44589999999999988 5999998888877766664 589988877653 123333345666
Q ss_pred hhhHHhhhhhhhhcccccCC
Q 024544 233 CASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 233 a~~~~~~~~~~~avGiNC~~ 252 (266)
.++.+....-|.=||+|-.+
T Consensus 115 vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHcCCCEEEecccCc
Confidence 66666554556779999986
No 41
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.85 E-value=31 Score=30.72 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+++.+.++.+.+.|+|.|.+= |+ -.+.++...+..+++. .|+-+.|-+.++ .|..+..++..+.
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hn~----~Gla~An~laAi~ 205 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA---TDLPLEFHAHND----LGLATANTLAAVR 205 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCC----CChHHHHHHHHHH
Confidence 345556677778899887553 43 3466778888888764 344467777665 4666666655554
No 42
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=83.18 E-value=26 Score=32.22 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=84.8
Q ss_pred chhHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCc
Q 024544 54 PHLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (266)
Q Consensus 54 Pe~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (266)
.+.+++.|+ .++++|+|+|.--|+..- ++++ .+++.+++..
T Consensus 135 ~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~-----------~E~~----~~~~~~~~~~-------------------- 179 (304)
T PRK09485 135 EEELQDFHRPRIEALAEAGADLLACETIPNL-----------DEAE----ALVELLKEEF-------------------- 179 (304)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeccCCH-----------HHHH----HHHHHHHHhc--------------------
Confidence 355666653 345889999999888532 2222 3444444321
Q ss_pred cccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcc
Q 024544 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (266)
.+.+++|.-++-+-|. +.+| .+.+++...-. ...++|.|.+-.. .++.+..+++-++... +
T Consensus 180 ~~~pv~is~~~~~~g~-l~~G----------~~~~~~~~~l~------~~~~~~~iGiNC~-~p~~~~~~l~~~~~~~-~ 240 (304)
T PRK09485 180 PGVPAWLSFTLRDGTH-ISDG----------TPLAEAAALLA------ASPQVVAVGVNCT-APELVTAAIAALRAVT-D 240 (304)
T ss_pred CCCcEEEEEEeCCCCc-CCCC----------CCHHHHHHHHh------cCCCceEEEecCC-CHHHHHHHHHHHHhcc-C
Confidence 2468898888865443 2222 34444443221 1235899999987 7888888887776532 3
Q ss_pred cccceeeec----CCCcee-ecCch---HHHhhhHHhhhhhhhhcccccC-Ccchhhhhheee
Q 024544 210 IPAWFSFNS----KDGINV-VSGDS---ILECASIADSCEQVVAVGINCT-SPRFIHGLILSV 263 (266)
Q Consensus 210 ~Pv~iSf~~----~~~~~l-~~G~~---~~~a~~~~~~~~~~~avGiNC~-~p~~~~~~l~~l 263 (266)
.|+.+--.- ...+.+ ....+ +.+.+..... .++..||==|. .|+|+..+-+.+
T Consensus 241 ~pl~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 241 KPLVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYA-AGARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred CcEEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHH-cCCeEEeeCCCCCHHHHHHHHHHh
Confidence 564432211 101111 11111 2233333333 46777887774 799998876544
No 43
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.06 E-value=2.6 Score=38.81 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=42.8
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
+...+++|+|.|++..|+ ++|++.+++.+++..+++.+.+| -|-+++.+..+.. .+++.|.+-.
T Consensus 212 a~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~ieaS----------GGI~~~ni~~yA~--tGvD~Is~ga 275 (289)
T PRK07896 212 LDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVLLESS----------GGLTLDTAAAYAE--TGVDYLAVGA 275 (289)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEEEEEE----------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 344467899999999998 99999999977764433333322 2556665555544 4677766644
No 44
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.83 E-value=6.1 Score=36.57 Aligned_cols=69 Identities=19% Similarity=0.076 Sum_probs=37.1
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccccC
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGINCT 251 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiNC~ 251 (266)
+..+.+.|+|.+-++...++.|++. ..+ -.+.+.-.+++...+..|+ .+++.+.+++. .+-..++..|.
T Consensus 248 ~~~l~~~g~d~ls~d~~~~l~~~~~------~~g--~~~~i~Gnidp~~ll~~gt-~eeI~~~v~~~l~~~~~Il~~gcg 318 (340)
T TIGR01463 248 LRDIANNGCFGFSVDMKPGMDHAKR------VIG--GQASLVGNLSPFSTLMNGT-PEKVKKLAKEVLYNGGDIVMPGCD 318 (340)
T ss_pred HHHHHHhCCCEEeecCCCCHHHHHH------HcC--CceEEEecCChHHHhcCCC-HHHHHHHHHHHHHcCCeEECCCCC
Confidence 4556678999999998888776532 222 1233334444333344453 34444443322 23345677786
No 45
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=82.31 E-value=24 Score=32.30 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=34.7
Q ss_pred ecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhh
Q 024544 147 LADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLE 195 (266)
Q Consensus 147 l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E 195 (266)
..+|--|-..+ .+.+....+.++.+..|...|+|.++||+|.+.-.
T Consensus 242 PS~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~WK 287 (305)
T COG5309 242 PSDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDDWK 287 (305)
T ss_pred CCCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeecccccc
Confidence 33444444454 36777888999999999999999999999987643
No 46
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.93 E-value=26 Score=31.72 Aligned_cols=87 Identities=8% Similarity=0.066 Sum_probs=49.7
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC-------------------Cceee----cCchH
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD-------------------GINVV----SGDSI 230 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~-------------------~~~l~----~G~~~ 230 (266)
++.+.++|||.+++=-.|- +|.....+.+++.+...=..++-+..+ .|.+- .-..+
T Consensus 112 ~~~~~~aGvdgviipDLP~-ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~ 190 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLPY-EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKL 190 (263)
T ss_pred HHHHHHcCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHH
Confidence 4556778999998888884 788888888877653211122222111 11110 01234
Q ss_pred HHhhhHHhhh-hhhhhcccccCCcchhhhhhe
Q 024544 231 LECASIADSC-EQVVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 231 ~~a~~~~~~~-~~~~avGiNC~~p~~~~~~l~ 261 (266)
.+.+..+++. .-+.++|+....|+++..+.+
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~ 222 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKG 222 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHh
Confidence 4455555532 346678888888887776543
No 47
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=81.61 E-value=15 Score=35.24 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=43.3
Q ss_pred hhHHhhhcCCCeEEeec-c--------------chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH
Q 024544 173 RVLILANSGADLIAFET-I--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET-~--------------~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~ 237 (266)
.++.+.+.|+|.|=+-- . .+.+-++.+++++++.. ++|+|+-++.. -+++.+.+..+
T Consensus 132 ~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn-------~t~i~~ia~aa 203 (385)
T PLN02495 132 IIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPN-------ITDITQPARVA 203 (385)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCC-------hhhHHHHHHHH
Confidence 44556678899886542 1 33455667778888753 69999999732 22366666555
Q ss_pred hhhhhhhh-cccccC
Q 024544 238 DSCEQVVA-VGINCT 251 (266)
Q Consensus 238 ~~~~~~~a-vGiNC~ 251 (266)
.. .++++ +.+|-.
T Consensus 204 ~~-~Gadgi~liNT~ 217 (385)
T PLN02495 204 LK-SGCEGVAAINTI 217 (385)
T ss_pred HH-hCCCEEEEeccc
Confidence 54 45565 445654
No 48
>PLN02489 homocysteine S-methyltransferase
Probab=81.38 E-value=26 Score=32.78 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=84.7
Q ss_pred hhHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 55 HLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 55 e~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
+.+++.|+ .++++|+|+|.-=|+..- .+++ .+++.+++. ..
T Consensus 163 ~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l-----------~E~~----a~~~~~~~~--------------------~~ 207 (335)
T PLN02489 163 EKLKDFHRRRLQVLAEAGPDLIAFETIPNK-----------LEAQ----AYVELLEEE--------------------NI 207 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeccCCh-----------HHHH----HHHHHHHHc--------------------CC
Confidence 55666665 345889999988777422 2222 334444432 12
Q ss_pred ccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCccc
Q 024544 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITI 210 (266)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~ 210 (266)
+.+++|.-++- -+..+.+| .+.+++.+.-.. ..++|.|.+-.. ..+.+..+++.++... ++
T Consensus 208 ~~p~~iS~t~~-~~~~l~~G----------~~~~~~~~~~~~------~~~~~~iGiNC~-~p~~~~~~l~~l~~~~-~~ 268 (335)
T PLN02489 208 KIPAWISFNSK-DGVNVVSG----------DSLLECASIADS------CKKVVAVGINCT-PPRFIHGLILSIRKVT-SK 268 (335)
T ss_pred CCeEEEEEEeC-CCCccCCC----------CcHHHHHHHHHh------cCCceEEEecCC-CHHHHHHHHHHHHhhc-CC
Confidence 35788888763 23233322 344554443211 137899999986 7888888888887643 35
Q ss_pred ccceeeecCCCcee----------ecCchHHHhhhHHhh--hhhhhhcccccC-Ccchhhhhheeeee
Q 024544 211 PAWFSFNSKDGINV----------VSGDSILECASIADS--CEQVVAVGINCT-SPRFIHGLILSVRK 265 (266)
Q Consensus 211 Pv~iSf~~~~~~~l----------~~G~~~~~a~~~~~~--~~~~~avGiNC~-~p~~~~~~l~~l~~ 265 (266)
|+.+-= +.|.. ..+.+..+....+.+ ..++..||==|. .|+++..+=+.++.
T Consensus 269 pl~vyP---NaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 269 PIVVYP---NSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISKALSE 333 (335)
T ss_pred cEEEEC---CCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHHHHhc
Confidence 654322 11111 112233333333322 146677777674 69999887665543
No 49
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=81.23 E-value=2.4 Score=39.99 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=50.1
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh---cCcccccceeeecCCC-----------ceeecCc---------
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKDG-----------INVVSGD--------- 228 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~---~~~~~Pv~iSf~~~~~-----------~~l~~G~--------- 228 (266)
.|+..|.++|+|++-+ |+|+.++++++-+..+. .+.++|++.-+-|+.. -++..|.
T Consensus 35 ~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~kiRINPGNi~~~~~~~~ 113 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVDKIRINPGNIVDEFQEEL 113 (359)
T ss_dssp HHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-SEEEE-TTTSS----SS-
T ss_pred HHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhCeEEECCCcccccccccc
Confidence 5899999999999984 89999888877665544 3446898887776541 1233333
Q ss_pred -----hHHHhhhHHhhhhhhhhcccccCC-cch
Q 024544 229 -----SILECASIADSCEQVVAVGINCTS-PRF 255 (266)
Q Consensus 229 -----~~~~a~~~~~~~~~~~avGiNC~~-p~~ 255 (266)
.+.+.+..+.+..-+.=||+|+.+ ++.
T Consensus 114 g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~ 146 (359)
T PF04551_consen 114 GSIREKVKEVVEAAKERGIPIRIGVNSGSLEKD 146 (359)
T ss_dssp SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HH
T ss_pred cchHHHHHHHHHHHHHCCCCEEEecccccCcHH
Confidence 233444444443345669999986 443
No 50
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.20 E-value=3.2 Score=37.82 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
++...+++|+|+|++.+| ++++++.+++.++...+++++.+| -|-+++.+.+++. .++++|.+-+
T Consensus 194 ea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs----------GgIt~~ni~~ya~--~GvD~IsvG~ 258 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS----------GNITLENINAYAK--SGVDAISSGS 258 (273)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 344456789999999997 688999999876542222323322 2456666655544 4777777655
No 51
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=81.13 E-value=27 Score=31.85 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=43.9
Q ss_pred HHHHhhhhhHHhhhcCCC-eE-Eeeccchh---------hhHHHHHHHHhhcCcccc-cceeeecCCCceeecCchHHHh
Q 024544 166 LKEFHRRRVLILANSGAD-LI-AFETIPNK---------LEAKAYAELLEEEGITIP-AWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD-~i-~~ET~~~~---------~E~~a~~~a~~~~~~~~P-v~iSf~~~~~~~l~~G~~~~~a 233 (266)
..++-.+.++...++|+| .| +.-|+... .++..+++.+++.. +.| +-+++-+.++ .|..+..+
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~-~~p~~~l~~H~Hn~----~Gla~AN~ 221 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDC-GVPSENLEWHGHND----FYKAVANA 221 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhc-CCCCceEEEEecCC----CChHHHHH
Confidence 344555555666678999 45 66787733 57888888887642 244 4578877766 46666666
Q ss_pred hhHHh
Q 024544 234 ASIAD 238 (266)
Q Consensus 234 ~~~~~ 238 (266)
+..+.
T Consensus 222 laA~~ 226 (279)
T cd07947 222 VAAWL 226 (279)
T ss_pred HHHHH
Confidence 65554
No 52
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.12 E-value=29 Score=31.28 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=48.3
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC-------------------Cc----eeecCchH
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD-------------------GI----NVVSGDSI 230 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~-------------------~~----~l~~G~~~ 230 (266)
++.+.++|||.+++=-+| ++|++..++.+++.+.+.-+.++-+..+ .| +......+
T Consensus 110 ~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~ 188 (258)
T PRK13111 110 AADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADL 188 (258)
T ss_pred HHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccH
Confidence 355667788888887776 4677777777777652111112222211 01 11111345
Q ss_pred HHhhhHHhhh-hhhhhcccccCCcchhhhhhe
Q 024544 231 LECASIADSC-EQVVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 231 ~~a~~~~~~~-~~~~avGiNC~~p~~~~~~l~ 261 (266)
.+.+..+++. .-+..+|+-...|+++..+++
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~ 220 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAA 220 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH
Confidence 5566666542 345677888878877777654
No 53
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.97 E-value=39 Score=31.87 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=40.1
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++. .++-++|-+.++ .|..+..++..+.
T Consensus 143 ~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~---~~v~l~~H~HNd----~GlA~ANalaA~~ 208 (365)
T TIGR02660 143 FLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQA---VDLPLEMHAHND----LGMATANTLAAVR 208 (365)
T ss_pred HHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCC----CChHHHHHHHHHH
Confidence 44445566677899988654 43 3567777888888763 234468887776 3655665555544
No 54
>PRK12999 pyruvate carboxylase; Reviewed
Probab=80.64 E-value=13 Score=40.46 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=55.1
Q ss_pred EEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccc
Q 024544 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIP 211 (266)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~P 211 (266)
.+-++++..|+.+.+ +++.| + .+||.+.++.+.+.|+|.|.|--+ -...++..+++++|+.- ++|
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~----~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ip 736 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----D----LDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLP 736 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----C----HHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCe
Confidence 345677777765542 22322 2 257778888899999999987643 34567777788887643 355
Q ss_pred cceeeecCCCceeecCchHHHhhhHHh
Q 024544 212 AWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 212 v~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|.|-+.++ .|..+..++..++
T Consensus 737 --i~~H~Hnt----~Gla~an~laA~~ 757 (1146)
T PRK12999 737 --IHLHTHDT----SGNGLATYLAAAE 757 (1146)
T ss_pred --EEEEeCCC----CchHHHHHHHHHH
Confidence 56766665 5766666655554
No 55
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=80.60 E-value=7.1 Score=35.24 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.0
Q ss_pred cCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchh
Q 024544 155 GDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (266)
Q Consensus 155 g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~ 193 (266)
+.|.. +.+++.++-.+-++.|.++|+|.+++|.+.+.
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 44543 78999999999999999999999999998866
No 56
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=80.27 E-value=8.6 Score=34.18 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHhhhhhHHhhhcCC--CeEEeec-----cchhhhHHHHHHHHhhcCccccccee-eecCC
Q 024544 168 EFHRRRVLILANSGA--DLIAFET-----IPNKLEAKAYAELLEEEGITIPAWFS-FNSKD 220 (266)
Q Consensus 168 ~~~~~qi~~l~~~gv--D~i~~ET-----~~~~~E~~a~~~a~~~~~~~~Pv~iS-f~~~~ 220 (266)
..|.+.++.|.+.|+ |.|-++. .|++.+++..++.+.+.+ +||+|| +.+..
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g--~pi~iTE~dv~~ 194 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLG--LEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcC--CceEEEEeecCC
Confidence 467778888877765 7777652 367888999998888865 999998 76654
No 57
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=80.24 E-value=45 Score=30.07 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+++.+.++.+.+.|+|.|.+= |+ ..+.++...++.+++.-++ +.++|-+.++ .|..+..++..+.
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~l~~H~Hnd----~Gla~An~laA~~ 218 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG--VPLGIHAHND----SGLAVANSLAAVE 218 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC--CeeEEEecCC----CCcHHHHHHHHHH
Confidence 455556677788899988654 43 4567788888888864222 5567877766 3666666665554
No 58
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=80.11 E-value=44 Score=29.97 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=28.6
Q ss_pred ccccccccccCchhHHHHhhhhhhccccEEEechhhhhh
Q 024544 43 PLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATI 81 (266)
Q Consensus 43 ~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~ 81 (266)
..|+..-....|+.+.+.=+.++++||++|-.+-...++
T Consensus 11 dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p 49 (257)
T TIGR01496 11 DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRP 49 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
Confidence 345554445677888888888999999999998655544
No 59
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=78.93 E-value=2.9 Score=37.46 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.4
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccchh
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIPNK 193 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~ 193 (266)
+.+++.+.-..-+..|.++|+|.+++|.+.+.
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~ 59 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDA 59 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 67888887777789999999999999987654
No 60
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.73 E-value=4.6 Score=37.11 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=42.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|+...+++|+|+|.+..|+ +++++.+++.+++..+++|+.+|- |-+.+.+.++.. .+++.|-+-+
T Consensus 208 ea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~~~~~i~leAsG----------GIt~~ni~~ya~--tGvD~Isvgs 272 (288)
T PRK07428 208 QVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQQNPRVKIEASG----------NITLETIRAVAE--TGVDYISSSA 272 (288)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHhcCCCeEEEEEC----------CCCHHHHHHHHH--cCCCEEEEch
Confidence 3444557899999999887 689999999887644345544433 555655555443 4666665544
No 61
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.68 E-value=49 Score=31.37 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=39.3
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++. .++-++|-+.++ .|..+..++..+.
T Consensus 146 ~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hnd----~GlA~AN~laAv~ 211 (378)
T PRK11858 146 FLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA---VDIPIEVHCHND----FGMATANALAGIE 211 (378)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCC----cCHHHHHHHHHHH
Confidence 44445566778899987554 44 3466777888877763 245578888776 3544454444443
No 62
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=77.46 E-value=5.4 Score=37.72 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=40.5
Q ss_pred ccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcc
Q 024544 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~ 209 (266)
..+.+|+.++||... +.++++.|+++|||+|.+-+-. +-+.+...++.+|+..++
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 457899999999532 2347788999999999998543 334445566667765446
Q ss_pred cccce
Q 024544 210 IPAWF 214 (266)
Q Consensus 210 ~Pv~i 214 (266)
+||+.
T Consensus 150 ~~via 154 (352)
T PF00478_consen 150 VPVIA 154 (352)
T ss_dssp SEEEE
T ss_pred ceEEe
Confidence 77774
No 63
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=77.18 E-value=8.7 Score=36.69 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=71.1
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (266)
.+.+.+++.-++| .-+.+.|.||+|+-.........-+. +++-+.|++..+++++...+ -+
T Consensus 69 ~d~~~~~~~l~~~-GL~v~~i~p~~f~~~~~~~GSLt~pD---~~vR~~AIe~~k~~idiA~e---------------LG 129 (378)
T TIGR02635 69 EDYEELARYAEEL-GLKIGAINPNLFQDDDYKFGSLTHPD---KRIRRKAIDHLLECVDIAKK---------------TG 129 (378)
T ss_pred cCHHHHHHHHHHc-CCceeeeeCCccCCcccCCCCCCCCC---HHHHHHHHHHHHHHHHHHHH---------------hC
Confidence 4555555552222 23566778888853322211111121 34666777777777654321 11
Q ss_pred cceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeec-----------cchhhhHHHHH
Q 024544 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET-----------IPNKLEAKAYA 200 (266)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET-----------~~~~~E~~a~~ 200 (266)
.+. | . -++++|+.|.|.-......+-+.+..++...... .|+++++ |. +++..+..+
T Consensus 130 a~~-I-~------iW~~DG~~~~g~~~~~~a~~rl~esL~eI~~~~~-~~v~~~i-E~Kp~Ep~~y~t~~~~~~~~l~-- 197 (378)
T TIGR02635 130 SKD-I-S------LWLADGTNYPGQDDFRSRKDRLEESLAEVYEHLG-ADMRLLI-EYKFFEPAFYHTDIPDWGTAYA-- 197 (378)
T ss_pred CCe-E-E------EecCCcCcCCcccCHHHHHHHHHHHHHHHHHhCc-CCCEEEE-ecCCCCCceeeecCCcHHHHHH--
Confidence 221 2 1 2234566666531100112334444444443322 3676665 43 333333333
Q ss_pred HHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 201 ELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 201 ~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++++.+ -|+.+.+ |-|+...|+++++.+..+.
T Consensus 198 -l~~~lg--~~~~v~l---D~GH~~~~Enia~~~a~l~ 229 (378)
T TIGR02635 198 -LSEKLG--ERALVLV---DTGHHAQGTNIEFIVATLL 229 (378)
T ss_pred -HHHhhC--CCceEEe---ecCccCCCCCHHHHHHHHh
Confidence 344433 3454444 4455567999999666554
No 64
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=77.11 E-value=24 Score=34.42 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++|.+.++.+.+.|+|.|.+--+ -.+.++..+++++++.- ++| +.|-+.++ .|..+..++..++
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt----~GlA~AN~laAie 220 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVP--LEVHTHAT----SGIAEMTYLKAIE 220 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCe--EEEEecCC----CCcHHHHHHHHHH
Confidence 46777788888999999977633 34567778888888742 244 56666655 4666666655554
No 65
>PRK00915 2-isopropylmalate synthase; Validated
Probab=77.04 E-value=73 Score=31.63 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=42.4
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcc-cccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGIT-IPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~-~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+|..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++.-++ ..+.++|-+.++ .|..+..++..+.
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND----~GlAvANslaAv~ 219 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHND----LGLAVANSLAAVE 219 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCC----CCHHHHHHHHHHH
Confidence 445556677788899988554 43 4567888888888763211 116789988876 3555555554443
No 66
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=76.49 E-value=54 Score=30.95 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=39.8
Q ss_pred HhhhhhHHhhhcCCCeEEee-ccc--hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|.|.+= |+. .+.++..+++.+++. .|+-+.|-+.++ .|..+..++..+.
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~---~~~~l~~H~Hnd----~GlA~AN~laA~~ 207 (363)
T TIGR02090 142 FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN---VKLPISVHCHND----FGLATANSIAGVK 207 (363)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc---cCceEEEEecCC----CChHHHHHHHHHH
Confidence 44445566778899987554 543 366777778877753 345577877766 3555555554443
No 67
>PRK07534 methionine synthase I; Validated
Probab=76.42 E-value=65 Score=30.19 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=60.1
Q ss_pred ccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhH-HHHHHHHhhcCcc
Q 024544 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEA-KAYAELLEEEGIT 209 (266)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~-~a~~~a~~~~~~~ 209 (266)
+.+++|.-++-+-|. +.+ ..+.+++.+.... ...++|.|.+-.......+ +.+++..+.. .+
T Consensus 170 ~~Pv~vSft~~~~g~-l~~----------G~~~~~~~~~~~~-----~~~~~~avGvNC~~gp~~~~~~l~~~~~~~-~~ 232 (336)
T PRK07534 170 GMPWCGTMSFDTAGR-TMM----------GLTPADLADLVEK-----LGEPPLAFGANCGVGASDLLRTVLGFTAQG-PE 232 (336)
T ss_pred CCeEEEEEEECCCCe-eCC----------CCcHHHHHHHHHh-----cCCCceEEEecCCCCHHHHHHHHHHHHHhc-CC
Confidence 468999998876543 332 2455665554321 1346699999988766665 4545544332 12
Q ss_pred cccceeeec----CCCceeecCchHHHhhhHHhh--hhhhhhcccccC-Ccchhhhhheee
Q 024544 210 IPAWFSFNS----KDGINVVSGDSILECASIADS--CEQVVAVGINCT-SPRFIHGLILSV 263 (266)
Q Consensus 210 ~Pv~iSf~~----~~~~~l~~G~~~~~a~~~~~~--~~~~~avGiNC~-~p~~~~~~l~~l 263 (266)
+|+.+-=.. ..++.+..-.+.+.....+.. ..++..||==|. .|+++..+-+.+
T Consensus 233 ~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~~la~~l 293 (336)
T PRK07534 233 RPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAAL 293 (336)
T ss_pred CeEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHHHHHHHH
Confidence 454421110 011221111223333333321 246777886674 699988765544
No 68
>PRK09389 (R)-citramalate synthase; Provisional
Probab=76.25 E-value=58 Score=32.15 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=41.4
Q ss_pred HHhhhhhHHhhhcCCCeEEee-ccc--hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~~--~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+|..+.++.+.++|+|.|.+= |+. .+.++..+++.+++. .++-++|-+.++ .|..+..++..+.
T Consensus 143 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~---~~v~l~~H~HND----~GlAvANalaAv~ 209 (488)
T PRK09389 143 DFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL---VKGPVSIHCHND----FGLAVANTLAALA 209 (488)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh---cCCeEEEEecCC----ccHHHHHHHHHHH
Confidence 345555667778999987553 543 556777778777763 345578888876 3655555555444
No 69
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.79 E-value=7.2 Score=35.67 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=44.1
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
+|+...+++|+|.|++.+|+ +++++.+++.+++.+.+-.+.+-. .-|-+++.+-.+.. .+++.|.+-.
T Consensus 193 eea~~a~~agaDiI~LDn~~-~e~l~~~v~~l~~~~~~~~~~lea--------SGGI~~~ni~~yA~--tGvD~Is~ga 260 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNMT-PEEIREVIEALKREGLRERVKIEV--------SGGITPENIEEYAK--LDVDVISLGA 260 (278)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHHhcCcCCCEEEEE--------ECCCCHHHHHHHHH--cCCCEEEeCh
Confidence 34555667999999999995 889999999887754111122222 13566665555444 4778777655
No 70
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=75.71 E-value=47 Score=29.89 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=38.5
Q ss_pred hhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 173 RVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 173 qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.++.+.+.|+|-|.+- |+ -++.++...++.+++. .|+-+.|-+.++ .|..+..++..+.
T Consensus 146 ~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~---~~~~i~~H~Hn~----~Gla~an~~~a~~ 207 (262)
T cd07948 146 VYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV---VSCDIEFHGHND----TGCAIANAYAALE 207 (262)
T ss_pred HHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCC----CChHHHHHHHHHH
Confidence 4455667799887554 43 3566777788888764 345567877766 4666666665554
No 71
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.67 E-value=10 Score=36.62 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=41.0
Q ss_pred ccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeecc-chhhhHHHHHHHHhhcCcc
Q 024544 131 SRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 131 ~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~ 209 (266)
+.+.+|+.++|+... ..++++.|+++|||+|.+-+- ++-..+...++.+|+..++
T Consensus 139 ~~~l~v~aavg~~~~------------------------~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~ 194 (404)
T PRK06843 139 NNKLRVGAAVSIDID------------------------TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPN 194 (404)
T ss_pred hcCeEEEEEEeCCHH------------------------HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCC
Confidence 346788888887311 234678899999999998743 3345555667777765445
Q ss_pred cccceee
Q 024544 210 IPAWFSF 216 (266)
Q Consensus 210 ~Pv~iSf 216 (266)
+++++..
T Consensus 195 ~~vi~g~ 201 (404)
T PRK06843 195 LDLIAGN 201 (404)
T ss_pred CcEEEEe
Confidence 6665533
No 72
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=75.32 E-value=4.7 Score=36.38 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=29.1
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccc
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~ 213 (266)
-.++++++.++|+|.+.+|-+|+ ++++.+.+.+ ++|++
T Consensus 160 ~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v-----~iP~i 197 (254)
T cd06557 160 LLEDALALEEAGAFALVLECVPA-ELAKEITEAL-----SIPTI 197 (254)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC-----CCCEE
Confidence 44578899999999999999986 5777666654 25665
No 73
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=74.92 E-value=31 Score=33.94 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.+||.+.++.+.+.|+|.|.+--+ -.+.++..+++++++.. ++| |.|-+.++ .|..+...+..++
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~-~~p--i~~H~Hnt----~GlA~An~laAie 229 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT-NLP--LIVHTHAT----SGISQMTYLAAVE 229 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc-CCe--EEEEeCCC----CccHHHHHHHHHH
Confidence 467888899999999999988743 35677888888888743 455 56666655 4666666655554
No 74
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=74.60 E-value=5 Score=36.43 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=29.4
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHH
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~ 203 (266)
+.+++.+ --++++++.++|+|.+.+|-+|+ ++++.+.+.+
T Consensus 156 t~~~a~~-~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l 195 (264)
T PRK00311 156 DEEAAEK-LLEDAKALEEAGAFALVLECVPA-ELAKEITEAL 195 (264)
T ss_pred CHHHHHH-HHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhC
Confidence 3344434 34478899999999999999988 6777766654
No 75
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=74.20 E-value=6.7 Score=35.98 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
|+...+++|+|.|++..|+ +++++.+++.+++..++ +.+.. ..|-+++.+..+.. .+++.|-+
T Consensus 201 qa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~~~~~--~~lea--------SGGI~~~ni~~yA~--tGvD~Is~ 263 (284)
T PRK06096 201 EAIAALRAQPDVLQLDKFS-PQQATEIAQIAPSLAPH--CTLSL--------AGGINLNTLKNYAD--CGIRLFIT 263 (284)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhccCCC--eEEEE--------ECCCCHHHHHHHHh--cCCCEEEE
Confidence 4455667999999999986 78999999887653322 23333 13667766655544 46666533
No 76
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=74.00 E-value=66 Score=28.76 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+++.+.++.+.+.|+|.|.+- |+ -.+.++..+++.+++.-++.++.+.|-+.++ .|..+..++..+.
T Consensus 143 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~----~GlA~An~laAi~ 212 (268)
T cd07940 143 DFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHND----LGLAVANSLAAVE 212 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCC----cchHHHHHHHHHH
Confidence 345556677778899988665 43 3567788888888874212126678877766 4666666665554
No 77
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=73.69 E-value=56 Score=36.10 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=87.5
Q ss_pred hhHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 55 HLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 55 e~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
+.+++.|+ .++++|+|+|.-=|+.-. .++ ++++..++++.++. ..
T Consensus 160 del~~~y~eQi~~L~e~GVDllliETi~d~-----------~Ea----kAal~a~~~~~~~~----------------~~ 208 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIETIFDT-----------LNA----KAAIFAVEEVFEEL----------------GV 208 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeeeCCH-----------HHH----HHHHHHHHHHHhhc----------------CC
Confidence 45555554 455789999998888533 122 24444445443221 13
Q ss_pred ccceEEEEeccc-ccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcc
Q 024544 131 SRPVLVAASVGS-YGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 131 ~~~~~VaGsiGP-~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (266)
+.+++|..++-. .|.++. | .+.+.+ +..+...++|.|.+-.-....++..+++-+.+.. +
T Consensus 209 ~lPv~vS~T~~d~~Gr~ls-G----------~~~ea~-------~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~-~ 269 (1229)
T PRK09490 209 RLPVMISGTITDASGRTLS-G----------QTTEAF-------WNSLRHAKPLSIGLNCALGADELRPYVEELSRIA-D 269 (1229)
T ss_pred CCeEEEEEEEECCCCccCC-C----------CcHHHH-------HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhc-C
Confidence 468999999843 454332 2 233322 2333467899999998878889999998886542 3
Q ss_pred cccceeeecCCCce----eecCchHHHhhhHHhhh--hh-hhhcccccC-Ccchhhhhheee
Q 024544 210 IPAWFSFNSKDGIN----VVSGDSILECASIADSC--EQ-VVAVGINCT-SPRFIHGLILSV 263 (266)
Q Consensus 210 ~Pv~iSf~~~~~~~----l~~G~~~~~a~~~~~~~--~~-~~avGiNC~-~p~~~~~~l~~l 263 (266)
.|+ ++... -|. -..-.++++....+.+. .+ +..||==|. .|+|+..+-+.+
T Consensus 270 ~pi--~vyPN-AGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l 328 (1229)
T PRK09490 270 TYV--SAHPN-AGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAV 328 (1229)
T ss_pred CeE--EEEeC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHH
Confidence 444 33221 110 01112344444444331 23 566675563 699988776544
No 78
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=73.46 E-value=56 Score=35.91 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=86.7
Q ss_pred hhHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 55 HLVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 55 e~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
+.+++.|+ .++++|+|+|.--|+... .++ ++++..++++.+.. ..
T Consensus 144 del~~~y~eq~~~L~~~GvD~iliETi~d~-----------~Ea----kAal~a~~~~~~~~----------------~~ 192 (1178)
T TIGR02082 144 DELVDAYTEQAKGLLDGGVDLLLIETCFDT-----------LNA----KAALFAAETVFEEK----------------GR 192 (1178)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeccCCH-----------HHH----HHHHHHHHHHHhhc----------------CC
Confidence 44555554 455789999998888533 122 24444445442210 12
Q ss_pred ccceEEEEec-ccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcc
Q 024544 131 SRPVLVAASV-GSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 131 ~~~~~VaGsi-GP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (266)
..+++|.+.+ -+-|.++. ..+.+++.. .+...++|.|.+-.-...+++..+++.+.+.. +
T Consensus 193 ~lPv~vS~~~~d~~Gr~~~-----------G~~~~~~~~-------~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~-~ 253 (1178)
T TIGR02082 193 ELPIMISGTIVDTSGRTLS-----------GQTIEAFLT-------SLEHAGIDMIGLNCALGPDEMRPHLKHLSEHA-E 253 (1178)
T ss_pred CCeEEEEEEEECCCCeeCC-----------CCcHHHHHH-------HHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhc-C
Confidence 4588888554 44454321 124444332 23357899999999888889999998887643 3
Q ss_pred cccceeeec--CCCceeecCchHHHhhhHHhh---hhhhhhcccccC-Ccchhhhhheee
Q 024544 210 IPAWFSFNS--KDGINVVSGDSILECASIADS---CEQVVAVGINCT-SPRFIHGLILSV 263 (266)
Q Consensus 210 ~Pv~iSf~~--~~~~~l~~G~~~~~a~~~~~~---~~~~~avGiNC~-~p~~~~~~l~~l 263 (266)
.|+++--.- ......-+ .+.++....+.+ ..++..||==|. .|+|+..+-+.+
T Consensus 254 ~pi~vyPNAGlP~~~~~yd-~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l 312 (1178)
T TIGR02082 254 AYVSCHPNAGLPNAFGEYD-LTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAV 312 (1178)
T ss_pred ceEEEEeCCCCCCCCCccc-CCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHh
Confidence 554431110 00000111 233444444432 234667776664 699988776544
No 79
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=73.31 E-value=44 Score=33.18 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcC-cccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEG-ITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~-~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++|.+.++.+.+.|+|.|.+--+ -...++...++++++.- +++| |.+-+.++ .|..+...+..++
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~H~Hnt----~GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INLHCHST----TGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEEEeCCC----CCcHHHHHHHHHH
Confidence 46777888899999999977643 34567777778887642 1344 56766665 4666666555554
No 80
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=72.97 E-value=8.5 Score=38.81 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=37.6
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh---cCcccccceeeecCC
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE---EGITIPAWFSFNSKD 220 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~---~~~~~Pv~iSf~~~~ 220 (266)
--.|+..|.++|+|++- =|+|+.++++++-...+. .|.++|++.-+-|+.
T Consensus 43 tv~Qi~~l~~aGceiVR-vtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVR-LTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 44589999999999998 489999998877654443 355688887766654
No 81
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=72.81 E-value=51 Score=32.84 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=42.8
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+|..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++. ..+.++|-+.++ .|..+..++..+.
T Consensus 158 ~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~---~~v~i~~H~HND----~GlA~ANslaAi~ 224 (524)
T PRK12344 158 EYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA---PGVPLGIHAHND----SGCAVANSLAAVE 224 (524)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh---cCCeEEEEECCC----CChHHHHHHHHHH
Confidence 455556677788999988765 32 4567788888888763 356788888876 3555555544443
No 82
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=72.02 E-value=8.7 Score=39.44 Aligned_cols=50 Identities=28% Similarity=0.390 Sum_probs=36.9
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHh---hcCcccccceeeecCC
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLE---EEGITIPAWFSFNSKD 220 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~---~~~~~~Pv~iSf~~~~ 220 (266)
--+|+..|.++|+|++- =|+|+.++++++-...+ +.+.++|++.-+-|+.
T Consensus 112 tv~Qi~~l~~aGceiVR-vtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 112 TVDQVMRIADKGADIVR-ITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP 164 (733)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH
Confidence 44589999999999998 48999999887765433 3455688887665543
No 83
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=72.02 E-value=31 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=17.1
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHH
Q 024544 174 VLILANSGADLIAFETIPNKLEAKA 198 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a 198 (266)
++.+.+.|+|.+-++.-.++.|++.
T Consensus 246 l~~~~~~g~d~~~~d~~~dl~~~~~ 270 (339)
T PRK06252 246 LEEMADCGFDGISIDEKVDVKTAKE 270 (339)
T ss_pred HHHHHhcCCCeeccCCCCCHHHHHH
Confidence 4556667888888877767766543
No 84
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=71.89 E-value=16 Score=32.97 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKL 194 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~ 194 (266)
.+.+++.+.-.+=++.|.++|||.+++|.+.+..
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P 54 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAP 54 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 3678888887778899999999999999988743
No 85
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=71.21 E-value=65 Score=28.73 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=45.7
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCc---------eeecCchHHHhhhHHhh--hhh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI---------NVVSGDSILECASIADS--CEQ 242 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~---------~l~~G~~~~~a~~~~~~--~~~ 242 (266)
++.|.++||+.+-+|-.. |....++++++.+ +||+.-.-..+.. ..++-..++++++.... ..|
T Consensus 95 ~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AG 169 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE---WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAG 169 (240)
T ss_pred HHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcC
Confidence 456777999999999764 5555667777654 5555443221100 01111234555544332 256
Q ss_pred hhhcccccCCcchhhhhhe
Q 024544 243 VVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 243 ~~avGiNC~~p~~~~~~l~ 261 (266)
++++=+-|..++.+..+-+
T Consensus 170 Ad~i~~e~~~~e~~~~i~~ 188 (240)
T cd06556 170 ADLIVMECVPVELAKQITE 188 (240)
T ss_pred CCEEEEcCCCHHHHHHHHH
Confidence 7777777775454444433
No 86
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=71.03 E-value=77 Score=29.06 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=16.0
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHH
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKA 198 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a 198 (266)
.++.+.+.|+|.+-++.-.++.|++.
T Consensus 248 ~~~~l~~~g~d~~~~~~~~~~~~~~~ 273 (343)
T PF01208_consen 248 ILDDLADLGADVLSVDEKVDLAEAKR 273 (343)
T ss_dssp GHHHHHTSS-SEEEE-TTS-HHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHH
Confidence 45667778999999887777655433
No 87
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=71.01 E-value=40 Score=30.64 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|-|-+= |+ .++.++...++.+++.-++ +-+++-+.++ .|..+..++..+.
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~--~~i~~H~Hnd----~Gla~AN~laA~~ 214 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN--LHFDFHAHND----YDLAVANVLAAVK 214 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC--CeEEEEeCCC----CCHHHHHHHHHHH
Confidence 55556677888899988654 43 3566777788877763222 4567877766 3666666655554
No 88
>PRK15452 putative protease; Provisional
Probab=70.83 E-value=38 Score=33.04 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccCchhHHHHhhhhhhccccEEEe--chhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIIT--ASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGR 128 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~T--nTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~ 128 (266)
..+++.++. -+++|||.|.- ..|.+... ...++.+ -.+.++++|++
T Consensus 10 ag~~e~l~a----Ai~~GADaVY~G~~~~~~R~~---~~~f~~e----dl~eav~~ah~--------------------- 57 (443)
T PRK15452 10 AGTLKNMRY----AFAYGADAVYAGQPRYSLRVR---NNEFNHE----NLALGINEAHA--------------------- 57 (443)
T ss_pred CCCHHHHHH----HHHCCCCEEEECCCccchhhh---ccCCCHH----HHHHHHHHHHH---------------------
Confidence 355565554 46899997765 33443221 1233432 25566777765
Q ss_pred ccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCc
Q 024544 129 ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI 208 (266)
Q Consensus 129 ~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~ 208 (266)
.+.+++|+--.=| ..+++ +.+.+.++.+.+.|||.|++-. + .++..+++..+
T Consensus 58 -~g~kvyvt~n~i~-------------------~e~el-~~~~~~l~~l~~~gvDgvIV~d---~----G~l~~~ke~~p 109 (443)
T PRK15452 58 -LGKKFYVVVNIAP-------------------HNAKL-KTFIRDLEPVIAMKPDALIMSD---P----GLIMMVREHFP 109 (443)
T ss_pred -cCCEEEEEecCcC-------------------CHHHH-HHHHHHHHHHHhCCCCEEEEcC---H----HHHHHHHHhCC
Confidence 2567777652111 11222 2333446778889999999653 2 33455565445
Q ss_pred ccccceeeec
Q 024544 209 TIPAWFSFNS 218 (266)
Q Consensus 209 ~~Pv~iSf~~ 218 (266)
++|+++|+..
T Consensus 110 ~l~ih~stql 119 (443)
T PRK15452 110 EMPIHLSVQA 119 (443)
T ss_pred CCeEEEEecc
Confidence 6899888754
No 89
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.78 E-value=51 Score=32.43 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.++|.+.++.+.+.|+|.|.+--+ -...++..+++++++.- ++-|.|-+.++ .|..+..++..++
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~---~vpI~~H~Hnt----~GlA~AN~laAie 219 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF---GVPVEVHSHCT----TGLASLAYLAAVE 219 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc---CCceEEEecCC----CCcHHHHHHHHHH
Confidence 356777888889999999977632 35667788888888642 34456766665 5766666665554
No 90
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=70.73 E-value=60 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=22.0
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcC
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (266)
++.+.++|||.+++=-+| .+|.....+++++.+
T Consensus 108 ~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g 140 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG 140 (259)
T ss_dssp HHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT
T ss_pred HHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC
Confidence 345566777888777777 466666666666655
No 91
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=70.09 E-value=6.3 Score=32.17 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=43.1
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHH-----HHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhh
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAK-----AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~-----a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~ 243 (266)
.+.+.++.+.+.|+|++.+++...-..-. ..+..+++. .+.|+++.+.+.+.. ..+..++..+.. .++
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~a~~~~~-~g~ 85 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAA-----AAVDIAAAAARA-AGA 85 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCch-----hhhhHHHHHHHH-cCC
Confidence 34456677778899999998765332211 113333332 258899888764321 111111233333 467
Q ss_pred hhcccccCCc
Q 024544 244 VAVGINCTSP 253 (266)
Q Consensus 244 ~avGiNC~~p 253 (266)
++|-+|+..+
T Consensus 86 d~v~l~~~~~ 95 (200)
T cd04722 86 DGVEIHGAVG 95 (200)
T ss_pred CEEEEeccCC
Confidence 7777777764
No 92
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.06 E-value=80 Score=30.10 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=37.6
Q ss_pred HHHHHHHhhhhhHHh----hhcC--CCeEEeeccch-------hhhHHHHHHHHhhcCcccccceeeecCCCceeecCch
Q 024544 163 LETLKEFHRRRVLIL----ANSG--ADLIAFETIPN-------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS 229 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l----~~~g--vD~i~~ET~~~-------~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~ 229 (266)
.++..+.+.+-++.+ .+.| |. |++|.+|. +..+..+++.+++.+ -|=.+.++++-......|.+
T Consensus 149 ~~~a~~~~~e~L~~lae~A~~~G~GV~-laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~~~~g~n 225 (382)
T TIGR02631 149 VRAALDRMREALNLLAAYAEDQGYGLR-FALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHEQMAGLN 225 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhHhhcCCC
Confidence 344444444444443 3443 54 67798864 334445555666644 34434444433333456778
Q ss_pred HHHhhhHH
Q 024544 230 ILECASIA 237 (266)
Q Consensus 230 ~~~a~~~~ 237 (266)
+.+++...
T Consensus 226 ~~~~i~~~ 233 (382)
T TIGR02631 226 FTHGIAQA 233 (382)
T ss_pred HHHHHHHH
Confidence 87777644
No 93
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.83 E-value=22 Score=30.90 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=12.8
Q ss_pred chhHHHHhhhhhhccccEEEec
Q 024544 54 PHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++.+.+.=+.+.++|||+|.|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEec
Confidence 3455554445666677777664
No 94
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=69.05 E-value=88 Score=28.14 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=25.9
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+..++.-+-++++|.+-|..+--..-.. .++.+|-.++.+.+++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVE 65 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHH
Confidence 345677777778899999666654332222 2444555555554443
No 95
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=69.02 E-value=51 Score=33.50 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++|.+.++.+.+.|+|.|.+--+ -...++...++++++.- ++| |.|-+.++ .|..+...+..++
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ip--i~~H~Hnt----~Gla~an~laAie 220 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLP--VHLHSHST----SGLASICHYEAVL 220 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCE--EEEEeCCC----CCcHHHHHHHHHH
Confidence 46777888889999999988744 34567777777777642 355 56666654 5666666555554
No 96
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.32 E-value=1e+02 Score=28.73 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=49.2
Q ss_pred hhHHH---HHHHhhhhhHHhhhcCCCeEEeec------------cch-------------hhhHHHHHHHHhhc-Ccccc
Q 024544 161 VSLET---LKEFHRRRVLILANSGADLIAFET------------IPN-------------KLEAKAYAELLEEE-GITIP 211 (266)
Q Consensus 161 ~~~~e---~~~~~~~qi~~l~~~gvD~i~~ET------------~~~-------------~~E~~a~~~a~~~~-~~~~P 211 (266)
++.+| +.+.|..-++...++|.|.|=+=. ..+ ..-+..+++++|+. +.+.|
T Consensus 127 mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 127 LSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 55554 555666666667789999996633 111 34455667777764 43455
Q ss_pred cceeeecCCCceeecCchHHHhhhHHhhh--hhhhhccc
Q 024544 212 AWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGI 248 (266)
Q Consensus 212 v~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGi 248 (266)
+.+-+...+ ....|.++++++..+... .+++.+-+
T Consensus 207 v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 207 IIYRLSMLD--LVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEEecccc--cCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 555554332 223567777776655432 35555544
No 97
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.17 E-value=82 Score=27.50 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=41.8
Q ss_pred hhhhhHHhhhcCCCeEEee---ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 170 HRRRVLILANSGADLIAFE---TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~E---T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+.+.++.+.+.|+|.|.+- -..+..++..+++.+++..++ +.+.|-+.++ .|..+..++..+.
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~Hn~----~gla~an~laA~~ 213 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGLHTHNT----LGLAVANSLAALE 213 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeCCC----CChHHHHHHHHHH
Confidence 3345566778899888663 235677888888888864311 7778887766 4666666666554
No 98
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.56 E-value=10 Score=34.79 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=41.1
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
+...+++|+|.|++..|+ ++|++.+++.++. ..| +.. .-|-+++.+..+.. .+++.|.+-+
T Consensus 207 a~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~---~~~--lea--------SGGI~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 207 LEEALELGVDAVLLDNMT-PDTLREAVAIVAG---RAI--TEA--------SGRITPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred HHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC---Cce--EEE--------ECCCCHHHHHHHHh--cCCCEEEeCh
Confidence 344557899999999997 6899999987653 233 222 13566766655544 4778777665
No 99
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.32 E-value=12 Score=36.65 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=42.5
Q ss_pred hhhhHHhhhcCCCeEEeecc-chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
.++++.|.++|+|+|.+.+- .....+...++.+++..+++|+++. ++.+.+++...++ .++++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~~--aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALIE--AGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHHH--cCCCEEEE
Confidence 46788999999999988753 4444555566666665446788872 3555666655444 35666543
No 100
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=67.26 E-value=65 Score=29.27 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=17.2
Q ss_pred hHHhhhcCCCeEEeeccchhhhHH
Q 024544 174 VLILANSGADLIAFETIPNKLEAK 197 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~ 197 (266)
++.+.+.|+|.+-++...++.|++
T Consensus 236 ~~~l~~~~~d~~~~d~~~dl~~~~ 259 (330)
T cd03465 236 LELMADLGADVFSIDVTVDLAEAK 259 (330)
T ss_pred HHHHHHhCCCeEeecccCCHHHHH
Confidence 566777888999888766666543
No 101
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=67.19 E-value=36 Score=37.27 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=44.8
Q ss_pred HHHhhhhhHHhhhcCCCeEEeeccc---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.+||.+.++.+.+.|+|.|.+--+. ...++..+++++|+.- ++|+ .+-+.++ .|..+...+..++
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi--~~H~Hdt----~Gla~an~laA~e 755 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPI--HFHTHDT----SGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeE--EEEECCC----CCcHHHHHHHHHH
Confidence 4678888899999999999887543 4556777777777643 4554 5666554 5766666655554
No 102
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=67.14 E-value=61 Score=32.79 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=43.6
Q ss_pred HHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++|.+.++.+.++|+|.|.+--+ -...++..+++++++.- ++| |.+-+.++ .|..+..++..+.
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAve 215 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLP--VHLHSHAT----TGMAEMALLKAIE 215 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 46777788888999999977632 35667888888888642 244 56777665 4666666655554
No 103
>PRK06498 isocitrate lyase; Provisional
Probab=67.03 E-value=8 Score=38.10 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=28.5
Q ss_pred hcCCCeEEeec-cchhhhHHHHHHHHhhcCcccc
Q 024544 179 NSGADLIAFET-IPNKLEAKAYAELLEEEGITIP 211 (266)
Q Consensus 179 ~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~P 211 (266)
..++|+||+|| -|++.+++..++.+++.-|++.
T Consensus 343 apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~ 376 (531)
T PRK06498 343 QNGADLLWIETEKPHVAQIAGMVNRIREVVPNAK 376 (531)
T ss_pred cCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 57899999998 8999999999999998654544
No 104
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.77 E-value=70 Score=29.20 Aligned_cols=123 Identities=17% Similarity=0.044 Sum_probs=66.0
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHH-------------HHHHHHHHHHHHHHHHhhcccC
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEAL-------------LRRSVEIACEAREIYYDRCMKD 119 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l-------------~~~av~lA~~A~~~~~~~~~~~ 119 (266)
.++...++-+...++|.+.|+.-+|. ++..+....-..+.+..+ |...++.|.++
T Consensus 24 s~e~k~~ia~~L~~~Gv~~IEvgsf~-~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~----------- 91 (287)
T PRK05692 24 PTADKIALIDRLSAAGLSYIEVASFV-SPKWVPQMADAAEVMAGIQRRPGVTYAALTPNLKGLEAALAA----------- 91 (287)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCc-CcccccccccHHHHHHhhhccCCCeEEEEecCHHHHHHHHHc-----------
Confidence 45566677788999999999998885 333232221111111111 23333333332
Q ss_pred CCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeE---------Eeecc
Q 024544 120 SWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLI---------AFETI 190 (266)
Q Consensus 120 ~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i---------~~ET~ 190 (266)
.-+.+.+.-++.+.=. . -+++ .+.++..+..++.++...+.|..+. -+++-
T Consensus 92 ----------g~~~v~i~~~~s~~~~------~--~n~~--~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~ 151 (287)
T PRK05692 92 ----------GADEVAVFASASEAFS------Q--KNIN--CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE 151 (287)
T ss_pred ----------CCCEEEEEEecCHHHH------H--HHhC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC
Confidence 1123444444443211 0 0121 3677777777777888877776543 11334
Q ss_pred chhhhHHHHHHHHhhcC
Q 024544 191 PNKLEAKAYAELLEEEG 207 (266)
Q Consensus 191 ~~~~E~~a~~~a~~~~~ 207 (266)
.+.+.+..+++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 152 VPPEAVADVAERLFALG 168 (287)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45677777777777765
No 105
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.39 E-value=65 Score=32.65 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++|.+.++.+.+.|+|.|.+=-+ -...++..+++++++.- ++-|.+-+.++ .|..+..++..++
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~---~~pi~~H~Hnt----~Gla~An~laAv~ 220 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV---DLPVQLHSHCT----SGLAPMTYLKAVE 220 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC---CCeEEEEEcCC----CCcHHHHHHHHHH
Confidence 57777888889999999977633 34577888888888742 34457776665 5766666666554
No 106
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=65.87 E-value=22 Score=32.16 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++++. ++..++.+.+.|||.|++= | .-+.+|-+.+++.+.+ .+.+.|+++... +.+..++
T Consensus 19 id~~~----~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~ 85 (289)
T PF00701_consen 19 IDEDA----LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEA 85 (289)
T ss_dssp B-HHH----HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHH
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHH
Confidence 56544 4557788889999998873 2 1235566677776544 344689998773 4456777
Q ss_pred hhHHhhh--hhhhhccc
Q 024544 234 ASIADSC--EQVVAVGI 248 (266)
Q Consensus 234 ~~~~~~~--~~~~avGi 248 (266)
++.++.. .+++++.+
T Consensus 86 i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 86 IELARHAQDAGADAVLV 102 (289)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhhcCceEEEE
Confidence 7665432 35555544
No 107
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=65.85 E-value=10 Score=34.42 Aligned_cols=67 Identities=25% Similarity=0.263 Sum_probs=39.4
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHh
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLE 204 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~ 204 (266)
.+-|.|=||=..-....-..|.-. ++ +.+++.+ -.++++++.++|+|.|++|-+|. +.++.+.+.+.
T Consensus 129 gIpV~gHiGltPq~a~~~ggy~~q-gr--t~~~a~~-~i~~A~a~e~AGA~~ivlE~vp~-~~a~~It~~l~ 195 (263)
T TIGR00222 129 GVPVVGHLGLTPQSVNILGGYKVQ-GK--DEEAAKK-LLEDALALEEAGAQLLVLECVPV-ELAAKITEALA 195 (263)
T ss_pred CCCEEEecCCCceeEeecCCeeec-CC--CHHHHHH-HHHHHHHHHHcCCCEEEEcCCcH-HHHHHHHHhCC
Confidence 455666666544322210012222 22 4444444 44578899999999999999994 66666666543
No 108
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=65.34 E-value=13 Score=37.37 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.5
Q ss_pred hhhhHHhhhcCCCeEEeeccchhhhHHHHHHHH---hhcCcccccceeeecCC
Q 024544 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELL---EEEGITIPAWFSFNSKD 220 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~---~~~~~~~Pv~iSf~~~~ 220 (266)
-.|+..|.++|+|++- =|+|+.++++++-... ++.+.++|++.-+-|+.
T Consensus 48 v~Qi~~L~~aGceiVR-vtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 99 (606)
T PRK00694 48 VRQICALQEWGCDIVR-VTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFP 99 (606)
T ss_pred HHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCCh
Confidence 4488999999999998 4899999988776543 33455688887665543
No 109
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=65.06 E-value=71 Score=26.23 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=43.5
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhh--hH---HHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFETIPNKL--EA---KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~--E~---~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
...+.+.+..+..++.+.+.||. +.+|+.+... -. ..+.+.+++.+ -|. +.++++.......|.++.+++.
T Consensus 105 ~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~~~l~~~~--~~~-~~i~~D~~h~~~~~~~~~~~i~ 180 (213)
T PF01261_consen 105 ENWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIYRLLEEVD--SPN-VGICFDTGHLIMAGEDPDEAIK 180 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHHHHHHHHT--TTT-EEEEEEHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHHHHHhhcC--CCc-ceEEEehHHHHHcCCCHHHHHH
Confidence 35666777777777777778887 5569887663 11 45555555543 232 4444443333444677777776
Q ss_pred HHh
Q 024544 236 IAD 238 (266)
Q Consensus 236 ~~~ 238 (266)
.+.
T Consensus 181 ~~~ 183 (213)
T PF01261_consen 181 RLA 183 (213)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 110
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.98 E-value=14 Score=33.73 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=41.0
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avG 247 (266)
|+...+++|+|.|++..|+ +++++.+++.+++..+ .+.+..+ .|-++..+..+.. .+++.|-
T Consensus 200 ea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~~~~--~~~leas--------GGI~~~ni~~ya~--~GvD~is 261 (277)
T TIGR01334 200 QALTVLQASPDILQLDKFT-PQQLHHLHERLKFFDH--IPTLAAA--------GGINPENIADYIE--AGIDLFI 261 (277)
T ss_pred HHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhccCC--CEEEEEE--------CCCCHHHHHHHHh--cCCCEEE
Confidence 4455567999999999876 7899999998875332 2333332 3667766665544 3566553
No 111
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=64.46 E-value=52 Score=30.61 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=31.6
Q ss_pred hCCCCCCccccccccc-cCchhHHHHhhhhhhccccEEEechhh
Q 024544 36 HGADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQ 78 (266)
Q Consensus 36 ~g~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (266)
.|+++..|+|-+.-.. ++.+.+..+.... +|+=++.|-|..
T Consensus 7 ~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g--~G~i~~ktvt~~ 48 (310)
T COG0167 7 LGLKFPNPLGLAAGFDGKNGEELDALAALG--FGAIVTKTVTPE 48 (310)
T ss_pred cceecCCCCeEcccCCccCHHHHHHHHhcC--CceEEecCCCCc
Confidence 3777888999755445 7888888887777 888888888875
No 112
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=64.42 E-value=7.7 Score=35.66 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=31.4
Q ss_pred hhhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhhcCcccccc
Q 024544 172 RRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAW 213 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~Pv~ 213 (266)
+|++++.++|+|.+++|. ..+.+|++.+++.+.. ++|+.
T Consensus 170 ~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~---p~pv~ 209 (290)
T TIGR02321 170 RRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPG---KVPLV 209 (290)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCC---CCCeE
Confidence 378899999999999997 5899999988886642 35664
No 113
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=64.05 E-value=15 Score=28.03 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=11.4
Q ss_pred cCCCeEEeeccchhhhHHHHHHHHh
Q 024544 180 SGADLIAFETIPNKLEAKAYAELLE 204 (266)
Q Consensus 180 ~gvD~i~~ET~~~~~E~~a~~~a~~ 204 (266)
..+|++++-|-++. -...+.++++
T Consensus 61 ~~~D~V~I~tp~~~-h~~~~~~~l~ 84 (120)
T PF01408_consen 61 EDVDAVIIATPPSS-HAEIAKKALE 84 (120)
T ss_dssp TTESEEEEESSGGG-HHHHHHHHHH
T ss_pred hcCCEEEEecCCcc-hHHHHHHHHH
Confidence 34555555555443 3344444444
No 114
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=63.64 E-value=56 Score=30.00 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccccC
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGINCT 251 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiNC~ 251 (266)
++.+.+.|+|.+-++.-.++.|++..+ +. .+.+.-.+++.+.+..|+ .+++.+.+.+. .+...+...|.
T Consensus 237 l~~~~~~g~d~~~~d~~~dl~e~~~~~------g~--~~~i~Gnidp~~~l~~gt-~e~i~~~~~~~l~~g~~Il~~Gc~ 307 (326)
T cd03307 237 LEYIAQCGFDGISVDEKVDVKTAKEIV------GG--RAALIGNVSPSQTLLNGT-PEDVKAEARKCLEDGVDILAPGCG 307 (326)
T ss_pred HHHHHHcCCCeecccccCCHHHHHHHc------CC--ceEEEeCCChHHHhcCCC-HHHHHHHHHHHHHccCCEecCcCC
Confidence 445666789998888777777654322 21 133334444433455564 23333333221 12245666775
Q ss_pred C-----cchhhhhhee
Q 024544 252 S-----PRFIHGLILS 262 (266)
Q Consensus 252 ~-----p~~~~~~l~~ 262 (266)
- ++.+..+++.
T Consensus 308 i~~~tp~env~a~v~a 323 (326)
T cd03307 308 IAPRTPLANLKAMVEA 323 (326)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 2 2455555443
No 115
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=63.56 E-value=8.9 Score=35.35 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=40.6
Q ss_pred hcCCCeEEeeccchhhhHH---HHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 179 NSGADLIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~---a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
+.|+|++.-|.+..-.=.. ...+.++....+.|+++++... +-+.+.+++..+.. .++++|-+||..|.
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~-~G~d~IelN~gcP~ 100 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE-LGADIIDINMGCPV 100 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh-CCCCEEEEECCCCH
Confidence 4578999988886542111 1112222222357888888432 22344555555554 57899999998874
No 116
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=63.20 E-value=38 Score=31.97 Aligned_cols=125 Identities=21% Similarity=0.274 Sum_probs=68.6
Q ss_pred hHHHHhhhhhhccccEEEechhhhhhhhhhcc--------------CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 024544 56 LVRKVHLDYLDAGANIIITASYQATIQGFEAK--------------GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSW 121 (266)
Q Consensus 56 ~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~--------------g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~ 121 (266)
.++.+...=.+||.|+++-.-|+ ..+... -+. ++...+.+ .+.-.+++.+|..++
T Consensus 39 ~~~~~~~~q~dAGld~~Tdgqlr---Dm~~~fl~~i~~~~~~~~p~~~~-~~~a~i~e--l~~~~~~~~~~~~~~----- 107 (344)
T PRK06052 39 VVRSAFQMKIDAGVQVPTYPQFR---DMIEQFLDIIRDEKCCEEPYVVK-EECAKILE--LEAIEEVAKEYKEET----- 107 (344)
T ss_pred HHHHHHHHHHhcCCccccchHHH---HHHHhHHHHHcCCcccCCCeeee-hhhhhHHH--HHHHHHHHHHHHHhh-----
Confidence 67778888889999999998887 222111 111 11222222 233345555665443
Q ss_pred CCCCCCCccccceEEEEec-ccccceecCCCcccc-CCCC--chhHHHHHHHhhhhhHHhhhcCCCeEEe-----eccc-
Q 024544 122 DFTGSGRISSRPVLVAASV-GSYGAYLADGSEYSG-DYGD--AVSLETLKEFHRRRVLILANSGADLIAF-----ETIP- 191 (266)
Q Consensus 122 ~~~~~~~~~~~~~~VaGsi-GP~g~~l~~gseY~g-~y~~--~~~~~e~~~~~~~qi~~l~~~gvD~i~~-----ET~~- 191 (266)
+....|=+++ ||+--+.. .|.+ .|.+ ..-..++..+-++.++.+.+.||++|-+ -|-+
T Consensus 108 ---------~~~~~VKv~iTGP~tL~~~---~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~ 175 (344)
T PRK06052 108 ---------GETLEVRVCVTGPTELYLQ---EFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPE 175 (344)
T ss_pred ---------CCCCCeEEEecCHHHHHHH---HcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCc
Confidence 2222233333 78632211 2323 3433 2234567778888899999999998843 3333
Q ss_pred ---hhhhHHHHHHHH
Q 024544 192 ---NKLEAKAYAELL 203 (266)
Q Consensus 192 ---~~~E~~a~~~a~ 203 (266)
+.+++..+++.+
T Consensus 176 ~~~~~~~~i~Al~~a 190 (344)
T PRK06052 176 IQFSDDEIISALTVA 190 (344)
T ss_pred cccCHHHHHHHHHHH
Confidence 556666666554
No 117
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=62.97 E-value=1e+02 Score=27.94 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=42.9
Q ss_pred hhhhhHHhhhcC-CCeEEe------------eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhH
Q 024544 170 HRRRVLILANSG-ADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI 236 (266)
Q Consensus 170 ~~~qi~~l~~~g-vD~i~~------------ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~ 236 (266)
|...++.+.++| +|.|=+ .-..+.+.+..+++++++.- ++|+++-++.. -+.+.+.+..
T Consensus 106 ~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~-------~~~~~~~a~~ 177 (301)
T PRK07259 106 YAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPN-------VTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCC-------chhHHHHHHH
Confidence 344556667788 898844 22234556677788888753 68998877531 1234455555
Q ss_pred Hhhhhhhhhccc-ccC
Q 024544 237 ADSCEQVVAVGI-NCT 251 (266)
Q Consensus 237 ~~~~~~~~avGi-NC~ 251 (266)
+.+ .++++|-+ |++
T Consensus 178 l~~-~G~d~i~~~nt~ 192 (301)
T PRK07259 178 AEE-AGADGLSLINTL 192 (301)
T ss_pred HHH-cCCCEEEEEccc
Confidence 554 46666543 543
No 118
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=62.78 E-value=20 Score=32.65 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=26.5
Q ss_pred eEEeecchhhhHhhhCCCCCCc-----ccccc-----ccccCchhHHHHhhhhhhccccEEEec
Q 024544 22 YSVVDGGFATELERHGADLNDP-----LWSAK-----CLVSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 22 ~lllDGg~gT~L~~~g~~~~~~-----lws~~-----~ll~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
+=++||-+...|+..|.-++.+ .|... +..-++|-.++ -.+||||||..+
T Consensus 118 vgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~----M~~AGaDiiv~H 177 (268)
T PF09370_consen 118 VGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARA----MAEAGADIIVAH 177 (268)
T ss_dssp GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHH----HHHHT-SEEEEE
T ss_pred ceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHH----HHHcCCCEEEec
Confidence 4488999999999987644211 11111 12234554444 359999999875
No 119
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=62.74 E-value=15 Score=33.28 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=38.1
Q ss_pred hhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
..++|+|+|.+..|+ .++++.+++.+++. +++|+.++- |-++..+..++. .++++|.+
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~-~~i~i~asG----------GIt~~ni~~~a~--~Gad~Isv 254 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGL-PRVLLEASG----------GITLENIRAYAE--TGVDVIST 254 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccC-CCeEEEEEC----------CCCHHHHHHHHH--cCCCEEEE
Confidence 345799999999986 47888888777653 346655443 556666655444 46666654
No 120
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=62.54 E-value=1.7e+02 Score=29.00 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=41.9
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCccc-ccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITI-PAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~-Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|..+.++.+.++|+|.|-+= |+ ..+.++..+++.+++.-+.. .+.++|-+.++ .|..+..++..+.
T Consensus 147 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND----~GlAvANalaAv~ 216 (494)
T TIGR00973 147 FLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHND----LGLAVANSLAAVQ 216 (494)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCC----CChHHHHHHHHHH
Confidence 44445567778899988553 43 35678888888887642122 26789988876 3655555554443
No 121
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=62.54 E-value=14 Score=34.13 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=42.4
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|+...+++|+|.|++.+|+ .+|++.+++.++. .+.+.. .-|-++..+..+.. .+++.|.+-+
T Consensus 220 ea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-----~~~iea--------SGGI~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-----RALLEV--------SGNVTLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred HHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-----CeEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4555667999999999998 6899999986542 222332 13566666655544 5788877766
No 122
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=62.52 E-value=90 Score=31.68 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=44.9
Q ss_pred HHHhhhhhHHhhhcCCCeEEeecc---chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 167 KEFHRRRVLILANSGADLIAFETI---PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~---~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
.++|.+.++.+.+.|+|.|.+=-+ -...++..+++++++.- ++| |.|-+.++ .|..+...+..++
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~GlA~An~laAie 221 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVP--LHLHCHAT----TGLSTATLLKAIE 221 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCe--EEEEECCC----CchHHHHHHHHHH
Confidence 467888888899999999977633 34667777888887642 344 56766665 5766666665554
No 123
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=62.08 E-value=18 Score=35.84 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=28.7
Q ss_pred hhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcccccce
Q 024544 172 RRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
++++.|+++|||+|.+-+-. +-......++.+|+..++.++++
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~ 294 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG 294 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE
Confidence 58899999999999998743 11222355666776433566654
No 124
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=61.53 E-value=25 Score=34.06 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=46.9
Q ss_pred chhHHHHHHHhhhhhHHhhhcCCCeEEee---ccchhhh-HHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 160 AVSLETLKEFHRRRVLILANSGADLIAFE---TIPNKLE-AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 160 ~~~~~e~~~~~~~qi~~l~~~gvD~i~~E---T~~~~~E-~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
..+.+.++..++ -.+.+.+|..|++- -+...++ ++++++++++.+.++|+++-+ .|+..++..+
T Consensus 327 ~a~~~~v~~a~~---ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~~g~~ 394 (422)
T PLN00124 327 NASEQQVVEAFK---ILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVDQGKR 394 (422)
T ss_pred CCCHHHHHHHHH---HHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHHHHHH
Confidence 357788888775 23457889999863 3333333 457788888877789998866 5777777766
Q ss_pred HHhh
Q 024544 236 IADS 239 (266)
Q Consensus 236 ~~~~ 239 (266)
.+..
T Consensus 395 ~l~~ 398 (422)
T PLN00124 395 ILKE 398 (422)
T ss_pred HHHh
Confidence 6654
No 125
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.49 E-value=1.3e+02 Score=27.42 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=38.4
Q ss_pred hhHHhhhcCCCeEEe------eccch-------hhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhh
Q 024544 173 RVLILANSGADLIAF------ETIPN-------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (266)
Q Consensus 173 qi~~l~~~gvD~i~~------ET~~~-------~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~ 239 (266)
.++.|.+.|+|+|-+ +.... ...-...++.+++.- ++|++.+-.+ . +.+++...+..
T Consensus 233 la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi------~---t~~~a~~~l~~ 302 (327)
T cd02803 233 IAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGI------R---DPEVAEEILAE 302 (327)
T ss_pred HHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCC------C---CHHHHHHHHHC
Confidence 556777889999953 11110 001112233344432 4777654322 1 34555555554
Q ss_pred hhhhhhccccc---CCcchhhhh
Q 024544 240 CEQVVAVGINC---TSPRFIHGL 259 (266)
Q Consensus 240 ~~~~~avGiNC---~~p~~~~~~ 259 (266)
.+++.|++.- ..|+...++
T Consensus 303 -g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 303 -GKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred -CCCCeeeecHHHHhCccHHHHH
Confidence 4677777743 356655443
No 126
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=61.36 E-value=16 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred ccCchhHHHHhhhhhhccccEEEech
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
+..++.+.++=+.|.++|+..+..++
T Consensus 19 ~~~~~~~~~~a~a~~~~G~~~~~~~~ 44 (221)
T PRK01130 19 LHSPEIMAAMALAAVQGGAVGIRANG 44 (221)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEcCC
Confidence 57889999999999999999888754
No 127
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=60.94 E-value=1.3e+02 Score=27.40 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=15.9
Q ss_pred CchhHHHHhhhhhhcc-ccEEEec
Q 024544 53 SPHLVRKVHLDYLDAG-ANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AG-AdiI~Tn 75 (266)
+.+.+++.-+.++++| ++-|..+
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~ 42 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVG 42 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEEC
Confidence 4456666666688999 9976555
No 128
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=60.72 E-value=1.8e+02 Score=28.90 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=42.7
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccc-cceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIP-AWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~P-v~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|..+.++.+.+.|+|.|.+- |+ ..+.++..+++.+++.-++.+ +.++|-+.++ .|..+..++..+.
T Consensus 240 fl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND----~GlAvANslaAi~ 309 (503)
T PLN03228 240 FLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHND----LGLATANTIAGIC 309 (503)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCC----cChHHHHHHHHHH
Confidence 44556677788899988665 44 345677778888876321222 7788988876 3665665555554
No 129
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=60.51 E-value=6.2 Score=37.27 Aligned_cols=40 Identities=18% Similarity=0.448 Sum_probs=28.6
Q ss_pred ccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcchh
Q 024544 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFI 256 (266)
Q Consensus 209 ~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~~~ 256 (266)
+-|.++.|.-+ |=+.+.+|+..+.. -.++|++||..|..+
T Consensus 73 D~PLIvQf~~n------dp~~ll~Aa~lv~~--y~D~idlNcGCPq~~ 112 (358)
T KOG2335|consen 73 DRPLIVQFGGN------DPENLLKAARLVQP--YCDGIDLNCGCPQKV 112 (358)
T ss_pred CCceEEEEcCC------CHHHHHHHHHHhhh--hcCcccccCCCCHHH
Confidence 57899998543 34556777776664 459999999988543
No 130
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=60.31 E-value=1.2e+02 Score=26.80 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=49.4
Q ss_pred hhHHhhhcCCCeEEeeccc--------------hhhhHHHHHHHHhhcCcc-cccceeeecCCCceeecC-chHHHhhhH
Q 024544 173 RVLILANSGADLIAFETIP--------------NKLEAKAYAELLEEEGIT-IPAWFSFNSKDGINVVSG-DSILECASI 236 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~--------------~~~E~~a~~~a~~~~~~~-~Pv~iSf~~~~~~~l~~G-~~~~~a~~~ 236 (266)
.++.+.++||+.+.+|-.. +.+|...-++++++.-.+ .+++|-...+ ... .| ..++++++.
T Consensus 89 ~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD--a~~-~~~~~~~eai~R 165 (243)
T cd00377 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD--ALL-AGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC--chh-ccCCCHHHHHHH
Confidence 4677778999999997543 566777777766654212 2344433322 221 23 467888876
Q ss_pred Hhh--hhhhhhcccccC-Ccchhhhhhe
Q 024544 237 ADS--CEQVVAVGINCT-SPRFIHGLIL 261 (266)
Q Consensus 237 ~~~--~~~~~avGiNC~-~p~~~~~~l~ 261 (266)
.+. ..|++++-+-+. .++++..+.+
T Consensus 166 a~ay~~AGAD~v~v~~~~~~~~~~~~~~ 193 (243)
T cd00377 166 AKAYAEAGADGIFVEGLKDPEEIRAFAE 193 (243)
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHHHh
Confidence 653 245666655443 3455555544
No 131
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=60.19 E-value=63 Score=31.39 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=48.0
Q ss_pred HHHhhhhhHHhhhcCCCeEEeeccc---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhh
Q 024544 167 KEFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQV 243 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~ 243 (266)
.++|.+.++.|++.|||-|-|-.|. +..++-.+++++|+. .|+=+.+-+.. -+|.+....+..++ .|+
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~---~~~pv~lHtH~----TsG~a~m~ylkAvE--AGv 225 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE---LPVPVELHTHA----TSGMAEMTYLKAVE--AGV 225 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh---cCCeeEEeccc----ccchHHHHHHHHHH--hCc
Confidence 3578888999999999999998765 455666677777764 34444454432 26766554444444 355
Q ss_pred hhccccc
Q 024544 244 VAVGINC 250 (266)
Q Consensus 244 ~avGiNC 250 (266)
+.|-.-+
T Consensus 226 D~iDTAi 232 (472)
T COG5016 226 DGIDTAI 232 (472)
T ss_pred chhhhhh
Confidence 5554444
No 132
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=60.09 E-value=80 Score=28.46 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=19.9
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQATI 81 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~ 81 (266)
.+|+.+++. ...+||+|++.+.-+.+.
T Consensus 20 ~s~~~~~~a---i~aSg~~ivTva~rR~~~ 46 (248)
T cd04728 20 PSPAIMKEA---IEASGAEIVTVALRRVNI 46 (248)
T ss_pred CCHHHHHHH---HHHhCCCEEEEEEEeccc
Confidence 566666665 457899999998877653
No 133
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=59.65 E-value=24 Score=33.00 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=32.0
Q ss_pred hhhHHhhhcCC--CeEEee-ccchhhhHHHHHHHHhhcCcccccce
Q 024544 172 RRVLILANSGA--DLIAFE-TIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 172 ~qi~~l~~~gv--D~i~~E-T~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
+++..|+++|+ |+|.+- |-++.+.+..+++.+++..++.||++
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 57888999965 999985 55666777777877877544577776
No 134
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=59.52 E-value=65 Score=30.56 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred CchhHHHHhhhhhhccccEEEec
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
+|+...++-+.++++|+|.|.-.
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdd 166 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDD 166 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeecc
Confidence 57788889999999999998643
No 135
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.16 E-value=18 Score=32.81 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=38.8
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiN 249 (266)
+....+.|+|+|.+..|+ +++++.+++.++. ++|+.++- |-+++.+..++. .++++|.+-
T Consensus 195 a~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~AiG----------GI~~~ni~~~a~--~Gvd~Iav~ 254 (268)
T cd01572 195 LKEALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEASG----------GITLENIRAYAE--TGVDYISVG 254 (268)
T ss_pred HHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEEEC----------CCCHHHHHHHHH--cCCCEEEEE
Confidence 344456899999999997 7888888876653 36766543 555655554443 355655443
No 136
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.10 E-value=1.5e+02 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=27.3
Q ss_pred CchhHHHHhhhhhhccccEEEe-chhhhhhhhhhccCCCHHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIIT-ASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~T-nTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (266)
+.+.+++.-+.++++|++-|.. -|.+=. .-++.+|-+++++.+++.
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~------~~Lt~eEr~~v~~~~~~~ 73 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGEC------ATLTWEEKQAFVATVVET 73 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccc------hhCCHHHHHHHHHHHHHH
Confidence 4566777777788999996554 333211 134555566666665553
No 137
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.86 E-value=1.6e+02 Score=27.78 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=43.7
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEeecc----chh--hhHHHHHHHHhhcCcccccceeeecCCCce---------ee
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFETI----PNK--LEAKAYAELLEEEGITIPAWFSFNSKDGIN---------VV 225 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~----~~~--~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~---------l~ 225 (266)
.+.++... .++.|.+.|+|+|-+=+- |.. ... -....+|+. .++||+++-.+.+... -.
T Consensus 232 ~~~~e~~~----~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~-~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 232 DTPDELEA----LLAPLVDAGVDIFHCSTRRFWEPEFEGSEL-NLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEecCCCccCCCcCccch-hHHHHHHHH-cCCCEEEECCccccccccccccccccc
Confidence 35555533 345567789999854221 100 011 122334443 2478887654421100 01
Q ss_pred cCchHHHhhhHHhhhhhhhhccccc---CCcchhhhh
Q 024544 226 SGDSILECASIADSCEQVVAVGINC---TSPRFIHGL 259 (266)
Q Consensus 226 ~G~~~~~a~~~~~~~~~~~avGiNC---~~p~~~~~~ 259 (266)
+-.+++++-..+.. ..++.|++-= +.|+...++
T Consensus 306 ~~~~~~~a~~~l~~-g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 306 SPASLDRLLERLER-GEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred ccCCHHHHHHHHHC-CCCCeehhhHHHHhCcHHHHHH
Confidence 22456666666654 3456555532 246555444
No 138
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=58.85 E-value=38 Score=30.81 Aligned_cols=74 Identities=11% Similarity=0.058 Sum_probs=45.1
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+. ++.+++.+++.|||.|++= | .-+.+|=+.+++.+.+ ...++|+++... .+..++
T Consensus 23 iD~~~----l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------~~t~~a 88 (296)
T TIGR03249 23 FDEAA----YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------GNTSDA 88 (296)
T ss_pred cCHHH----HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------ccHHHH
Confidence 56554 5557888889999998753 3 3346677777775544 333589887762 134566
Q ss_pred hhHHhhh--hhhhhccc
Q 024544 234 ASIADSC--EQVVAVGI 248 (266)
Q Consensus 234 ~~~~~~~--~~~~avGi 248 (266)
++.++.. .+++++.+
T Consensus 89 i~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 89 IEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 6555432 35555444
No 139
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=58.67 E-value=1e+02 Score=28.72 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhh
Q 024544 37 GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQA 79 (266)
Q Consensus 37 g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a 79 (266)
|+.+..|.+.+.-+..+-+.+++ +.++|+..|+|-|...
T Consensus 55 Gl~l~nPi~~AsG~~~~~~~~~~----~~~~G~Gavv~ktvt~ 93 (344)
T PRK05286 55 GLTFPNPVGLAAGFDKNGEAIDA----LGALGFGFVEVGTVTP 93 (344)
T ss_pred CEECCCCCEECCCCCCChHHHHH----HHHcCCCEEEeCCcCC
Confidence 56666676655444444444433 7789999888888654
No 140
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=58.63 E-value=1.4e+02 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=26.1
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+.+++.-+-+++.|++-|..+--..-.. -++.+|-.++++.+++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-----~Ls~~Er~~l~~~~~~ 64 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPG-----SLTLEERKQAIENAID 64 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHH
Confidence 455677777777889998666554332222 2344444555554444
No 141
>PLN02321 2-isopropylmalate synthase
Probab=58.55 E-value=2.1e+02 Score=29.34 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=43.6
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCccc-ccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITI-PAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~-Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|..+.++.+.++|+|.|-+= |+ ..+.|+..+++.+++.-+.. ++++++-|.++ .|..+..++..+.
T Consensus 241 ~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND----~GlAvANslaAv~ 310 (632)
T PLN02321 241 FLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQND----LGLSTANTLAGAH 310 (632)
T ss_pred HHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCC----CCHHHHHHHHHHH
Confidence 34445677788899988654 43 45678888888887642233 48899999876 3555555554443
No 142
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=58.33 E-value=27 Score=31.16 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=50.0
Q ss_pred CCeEEeecchhhhHhhhCCCCCCccc----------cccccccCchhHHHHhhhhhhccccEEEechhhhhhhhh--hcc
Q 024544 20 GGYSVVDGGFATELERHGADLNDPLW----------SAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGF--EAK 87 (266)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~lw----------s~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l--~~~ 87 (266)
-.+.++||-|-.-||+.|.-+..+.- -..+-+..++.- ++-.+||||||..|-= -+..++ .+.
T Consensus 122 PTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eA----qa~~~aGadiiv~hmg-~ttgG~Igar~ 196 (276)
T COG5564 122 PTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEA----QAMTKAGADIIVAHMG-LTTGGLIGARS 196 (276)
T ss_pred CeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHH----HHHHHcCcceeeeccc-ccccceecccc
Confidence 35789999999999998764422210 011112233222 2346899999987642 222222 344
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 024544 88 GFSTEEAEALLRRSVEIACEAR 109 (266)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~ 109 (266)
+++.+...++.+.+.+-+|-.+
T Consensus 197 ~~Sl~~~vel~~~~~~aar~v~ 218 (276)
T COG5564 197 ALSLADCVELIELAAEAARGVR 218 (276)
T ss_pred ccCHHHHHHHHHHHHHHHhhhh
Confidence 6666667777777777666664
No 143
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=58.32 E-value=21 Score=35.08 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred HhhhhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcccccceee
Q 024544 169 FHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
...++++.|+++|||.|.+-+-. +..-+..+++.+++..+++||++.+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~ 273 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN 273 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec
Confidence 44578899999999999997544 3344445566677654578998843
No 144
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=58.28 E-value=1.6e+02 Score=27.47 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=17.0
Q ss_pred hhHHHHhhhhhh-------ccccEEEechh
Q 024544 55 HLVRKVHLDYLD-------AGANIIITASY 77 (266)
Q Consensus 55 e~V~~iH~~Yl~-------AGAdiI~TnTy 77 (266)
+-|.++.++|.+ ||.|-|.-|--
T Consensus 134 ~eI~~ii~~f~~AA~ra~~aGfDgVeih~a 163 (343)
T cd04734 134 EDIEEIIAAFADAARRCQAGGLDGVELQAA 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 356778888865 48999988863
No 145
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.01 E-value=20 Score=32.71 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=40.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|+...++.|+|+|.+..| ++++++.+++.++ .++|+.+|- |-+++.+..++. .+++.|.+-+
T Consensus 201 ea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsG----------GIt~~ni~~~a~--tGvD~Isvg~ 262 (277)
T PRK05742 201 ELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASG----------GINESTLRVIAE--TGVDYISIGA 262 (277)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEEC----------CCCHHHHHHHHH--cCCCEEEECh
Confidence 444455789999999876 5778888887654 246766553 555655544443 4677776665
No 146
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.86 E-value=1.4e+02 Score=26.60 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=25.4
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+.+++.-+-+++.|++-|..+--..-.. .++.+|-.++++.+++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~ 61 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVE 61 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHH
Confidence 455666666666788999776554322111 2444445555444444
No 147
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.69 E-value=1.6e+02 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.6
Q ss_pred hhHHHHhhhhh-------hccccEEEech
Q 024544 55 HLVRKVHLDYL-------DAGANIIITAS 76 (266)
Q Consensus 55 e~V~~iH~~Yl-------~AGAdiI~TnT 76 (266)
+-|.++-++|. +||.|.|.-+-
T Consensus 143 ~eI~~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 143 EEVETFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 46888999998 56999887764
No 148
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=57.67 E-value=32 Score=31.62 Aligned_cols=74 Identities=24% Similarity=0.196 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhhc-CcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++++. +++.++.+.+.|||.|++= | .-+.+|=+.+++.+.+. +..+|+++.. .+.+..++
T Consensus 22 vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 22 VDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 66554 5557888999999977542 2 23456667777766553 4468988776 24456677
Q ss_pred hhHHhhh--hhhhhcc
Q 024544 234 ASIADSC--EQVVAVG 247 (266)
Q Consensus 234 ~~~~~~~--~~~~avG 247 (266)
++..+.. .+++++.
T Consensus 89 i~lak~a~~~Gad~il 104 (299)
T COG0329 89 IELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 7765543 3444443
No 149
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.57 E-value=39 Score=30.74 Aligned_cols=75 Identities=8% Similarity=-0.009 Sum_probs=46.2
Q ss_pred hhHHHHHHHhhhhhHHhhhcC-CCeEEee------ccchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHH
Q 024544 161 VSLETLKEFHRRRVLILANSG-ADLIAFE------TIPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILE 232 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~g-vD~i~~E------T~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~ 232 (266)
++.+. ++.+++.+.+.| ||.|++= ..-+.+|-+.+++.+.+ ...++|+++... +.+..+
T Consensus 18 iD~~~----~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (290)
T TIGR00683 18 INEKG----LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKE 84 (290)
T ss_pred cCHHH----HHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHH
Confidence 56554 445778888899 9998553 34467787788875554 333578887773 234566
Q ss_pred hhhHHhhh--hhhhhccc
Q 024544 233 CASIADSC--EQVVAVGI 248 (266)
Q Consensus 233 a~~~~~~~--~~~~avGi 248 (266)
+++.++.. .+++++.+
T Consensus 85 ~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 85 AVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 66655432 35555444
No 150
>PLN02417 dihydrodipicolinate synthase
Probab=57.28 E-value=41 Score=30.38 Aligned_cols=78 Identities=17% Similarity=0.032 Sum_probs=46.8
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEe-ec-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+. ++.+++.+++.|||.|++ -| .-+.+|-+.+++.+.+ ...++|+++... ..+..++
T Consensus 19 iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~~ 85 (280)
T PLN02417 19 FDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG---------SNSTREA 85 (280)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC---------CccHHHH
Confidence 56544 555788888899999865 23 2245676777765443 333588887662 3455677
Q ss_pred hhHHhhh--hhhhhcccccCCc
Q 024544 234 ASIADSC--EQVVAVGINCTSP 253 (266)
Q Consensus 234 ~~~~~~~--~~~~avGiNC~~p 253 (266)
++.+++. .++++ +-+..|
T Consensus 86 i~~a~~a~~~Gada--v~~~~P 105 (280)
T PLN02417 86 IHATEQGFAVGMHA--ALHINP 105 (280)
T ss_pred HHHHHHHHHcCCCE--EEEcCC
Confidence 7666543 34443 334545
No 151
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=56.82 E-value=41 Score=30.21 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhhc-CcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+.++ ..++.+++.|||.+++= | .-+.+|-+.+++.+.+. ..++|+++... +.+..++
T Consensus 18 iD~~~~~----~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 84 (284)
T cd00950 18 VDFDALE----RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG---------SNNTAEA 84 (284)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC---------CccHHHH
Confidence 6665544 46788888999998743 3 35677877888766554 33578887662 4456677
Q ss_pred hhHHhh
Q 024544 234 ASIADS 239 (266)
Q Consensus 234 ~~~~~~ 239 (266)
++.++.
T Consensus 85 ~~~a~~ 90 (284)
T cd00950 85 IELTKR 90 (284)
T ss_pred HHHHHH
Confidence 776654
No 152
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=56.55 E-value=25 Score=31.90 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=36.9
Q ss_pred hhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhc
Q 024544 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV 246 (266)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~av 246 (266)
..+.|+|.|.+-.|.. .+++.+++.++...+++|++++- |-+++.+..++. .++++|
T Consensus 199 A~~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~AsG----------GI~~~ni~~~~~--~Gvd~I 255 (272)
T cd01573 199 AAEAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAAAG----------GINIENAAAYAA--AGADIL 255 (272)
T ss_pred HHHcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEEEC----------CCCHHHHHHHHH--cCCcEE
Confidence 3468999999998864 67788887777543356766543 555655555444 355555
No 153
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=56.33 E-value=1.5e+02 Score=26.61 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=14.7
Q ss_pred chhHHHHhhhhhhccccEEEec
Q 024544 54 PHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.+.+++.-+.++++|++-|..+
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~ 39 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVV 39 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 4455565566678899976654
No 154
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=56.31 E-value=21 Score=31.10 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=46.4
Q ss_pred hhHHhhhcCCCeEEeec-cch------hhhHHHHHHHHhhcCcccccceeeecCCCceee---cCchHHHhhhHHhhhhh
Q 024544 173 RVLILANSGADLIAFET-IPN------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVV---SGDSILECASIADSCEQ 242 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET-~~~------~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~---~G~~~~~a~~~~~~~~~ 242 (266)
+++...+.|+|.+.+.- +.. +.+++.+.+++++.+ +|+++....+ +.++. +...+..++....+ .+
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g--~~~iie~~~~-g~~~~~~~~~~~i~~~~~~a~~-~G 156 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG--LPLIAWMYPR-GPAVKNEKDPDLIAYAARIGAE-LG 156 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC--CCEEEEEecc-CCcccCccCHHHHHHHHHHHHH-HC
Confidence 56667788998764432 222 225556666666644 8888855332 22221 12333333333333 58
Q ss_pred hhhcccccC-Ccchhhhhhe
Q 024544 243 VVAVGINCT-SPRFIHGLIL 261 (266)
Q Consensus 243 ~~avGiNC~-~p~~~~~~l~ 261 (266)
++.|+++.+ +++.+..+.+
T Consensus 157 aD~Ik~~~~~~~~~~~~i~~ 176 (235)
T cd00958 157 ADIVKTKYTGDAESFKEVVE 176 (235)
T ss_pred CCEEEecCCCCHHHHHHHHh
Confidence 889999865 3555555544
No 155
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=55.88 E-value=18 Score=31.54 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=31.2
Q ss_pred hhHHhhhcCCCeEEeeccc--hhhhHHHHHHHHhhcCcccccce
Q 024544 173 RVLILANSGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
.++.+.++|+|.|++-.=. +.+++...++++|+.. ++|+|+
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil 58 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL 58 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE
Confidence 5667888999999997333 4566677788888853 699997
No 156
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=55.64 E-value=23 Score=27.99 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=31.9
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
+.+++......-++.+-+.|+|.|++|.+|+-.+..++..=+++
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 45555554445678887889999999999988888888765544
No 157
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=55.51 E-value=48 Score=28.18 Aligned_cols=92 Identities=24% Similarity=0.299 Sum_probs=56.6
Q ss_pred cccceEEEEecccccceecCCCccccCCCCc--------hh----------HH-HHHHHhhhhhHHhhhcCCCeEEeecc
Q 024544 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDA--------VS----------LE-TLKEFHRRRVLILANSGADLIAFETI 190 (266)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~--------~~----------~~-e~~~~~~~qi~~l~~~gvD~i~~ET~ 190 (266)
.+.+++++|-=|.+.+...=-+|..|.|..+ ++ -+ -....|..|++++...|==+|.+=|-
T Consensus 40 ~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTS 119 (176)
T COG0279 40 NGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTS 119 (176)
T ss_pred cCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 4667888887776653322223444444211 00 01 12346888999999888455667788
Q ss_pred chhhhHHHHHHHHhhcCcccccceeeecCCCcee
Q 024544 191 PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV 224 (266)
Q Consensus 191 ~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l 224 (266)
.+-..+..+++.+++.+ . ..|.++=+++|++
T Consensus 120 GNS~nVl~Ai~~Ak~~g--m-~vI~ltG~~GG~~ 150 (176)
T COG0279 120 GNSKNVLKAIEAAKEKG--M-TVIALTGKDGGKL 150 (176)
T ss_pred CCCHHHHHHHHHHHHcC--C-EEEEEecCCCccc
Confidence 88888888888888765 2 3456766665553
No 158
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=55.23 E-value=51 Score=30.18 Aligned_cols=52 Identities=15% Similarity=0.009 Sum_probs=34.1
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEe-ec-----cchhhhHHHHHHHHhh-cCcccccceee
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEE-EGITIPAWFSF 216 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf 216 (266)
++.+.+ +.+++.+.+.|||.|++ -| .-+.+|=+.+++.+.+ ...++|+++.+
T Consensus 25 iD~~~l----~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 83 (303)
T PRK03620 25 FDEAAY----REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA 83 (303)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 666554 44778888899999865 33 2245566677765543 33368998776
No 159
>PRK00865 glutamate racemase; Provisional
Probab=55.18 E-value=31 Score=30.88 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=28.8
Q ss_pred CCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccc
Q 024544 156 DYGDAVSLETLKEFHRRRVLILANSGADLIAFETIP 191 (266)
Q Consensus 156 ~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~ 191 (266)
+||. -+.+++.++-.+.++.|.+.|+|++++=..+
T Consensus 43 PYG~-ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNT 77 (261)
T PRK00865 43 PYGE-KSEEEIRERTLEIVEFLLEYGVKMLVIACNT 77 (261)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 3442 5889999999999999999999999886553
No 160
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=55.04 E-value=48 Score=29.88 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+.+ +.+++.+++.|||.+++= | .-+.+|=+.+++.+.+ ...++||++... ..+..++
T Consensus 16 iD~~~~----~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~~~ 82 (285)
T TIGR00674 16 VDFAAL----EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATEEA 82 (285)
T ss_pred cCHHHH----HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHHHH
Confidence 565554 446788888999998763 3 3345666677765544 333588887763 3345666
Q ss_pred hhHHhh
Q 024544 234 ASIADS 239 (266)
Q Consensus 234 ~~~~~~ 239 (266)
++.++.
T Consensus 83 i~~a~~ 88 (285)
T TIGR00674 83 ISLTKF 88 (285)
T ss_pred HHHHHH
Confidence 665543
No 161
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.62 E-value=1.9e+02 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.4
Q ss_pred hhhhhccccEEEechhhh
Q 024544 62 LDYLDAGANIIITASYQA 79 (266)
Q Consensus 62 ~~Yl~AGAdiI~TnTy~a 79 (266)
++-++.|||.+...-|..
T Consensus 113 e~a~~~GAdAVk~lv~~~ 130 (340)
T PRK12858 113 RRIKEAGADAVKLLLYYR 130 (340)
T ss_pred HHHHHcCCCEEEEEEEeC
Confidence 445899999999988864
No 162
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=54.46 E-value=36 Score=33.12 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=39.9
Q ss_pred hhhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcc
Q 024544 171 RRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avG 247 (266)
.++++.|.++|+|+|.+-+.. +-.-+...++.+++..+++|+++. +..+.+++...++ .++++|.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G----------~v~t~~~a~~l~~--aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAG----------NVATAEQAKALID--AGADGLR 291 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEE----------eCCCHHHHHHHHH--hCCCEEE
Confidence 356788999999999986532 223445556666665346888862 2444555554444 3566653
No 163
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=54.09 E-value=27 Score=30.87 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=32.5
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
-.+.|.+.|+|+|++..|..-.+.|..++-.- ++||+.|=+
T Consensus 170 Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~----g~PVlLsr~ 210 (221)
T PF07302_consen 170 AARELAEQGADLIVLDCMGYTQEMRDIVQRAL----GKPVLLSRT 210 (221)
T ss_pred HHHHHHhcCCCEEEEECCCCCHHHHHHHHHHh----CCCEEeHHH
Confidence 45678889999999999999999998875332 489987643
No 164
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.04 E-value=25 Score=32.36 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=42.1
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|+...+++|+|.|++..|+ +++++.+++.++. .+.+.. .-|-+++.+..+.. .+++.|-+-+
T Consensus 209 ea~~a~~agaDiImLDnms-pe~l~~av~~~~~-----~~~lea--------SGGI~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 209 AAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG-----RSRIEC--------SGNIDMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC-----ceEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 4555667999999999997 7899999987663 122222 13666766665544 4777776666
No 165
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=53.75 E-value=50 Score=29.52 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=46.0
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhhc-CcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+. ++.+++.+++.|||.|++= | .-+.+|-+.+++.+.+. +.++|+++... +.+..++
T Consensus 15 iD~~~----~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 81 (281)
T cd00408 15 VDLDA----LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREA 81 (281)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHH
Confidence 56555 4446788888999998743 3 22467777788766553 33688888773 3344566
Q ss_pred hhHHhhh--hhhhhccc
Q 024544 234 ASIADSC--EQVVAVGI 248 (266)
Q Consensus 234 ~~~~~~~--~~~~avGi 248 (266)
++.++.. .+++++.+
T Consensus 82 i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 82 IELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 6655432 35555554
No 166
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.04 E-value=26 Score=32.40 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=41.6
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
+|+...+++|+|.|++..|+ +++++.+++.++. .+.+.. .-|-+++.+.++.. .+++.|-+-+
T Consensus 216 eea~eA~~aGaDiImLDnms-pe~l~~av~~~~~-----~~~lEa--------SGGIt~~ni~~yA~--tGVD~IS~ga 278 (294)
T PRK06978 216 AQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG-----RAVLEV--------SGGVNFDTVRAFAE--TGVDRISIGA 278 (294)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC-----CeEEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 34555667999999999997 7899998887653 122222 13566766655544 4777766555
No 167
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.03 E-value=1.7e+02 Score=26.15 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=25.2
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+..++.-+-++++|++-|..+-...-.. .++.++-.++.+.+++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~-----~lt~~Er~~l~~~~~~ 64 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESP-----TLSDEEHEAVIEAVVE 64 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchh-----hCCHHHHHHHHHHHHH
Confidence 345566666666789999887762221111 2344555555544444
No 168
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=52.92 E-value=31 Score=31.34 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=23.1
Q ss_pred ccccceeeecCCCceeecCchHH---HhhhHHhhh-hhhhhcccccCCcc
Q 024544 209 TIPAWFSFNSKDGINVVSGDSIL---ECASIADSC-EQVVAVGINCTSPR 254 (266)
Q Consensus 209 ~~Pv~iSf~~~~~~~l~~G~~~~---~a~~~~~~~-~~~~avGiNC~~p~ 254 (266)
+.|+++|+. |.+.+ +++..+.+. ..+++|=+||+.|.
T Consensus 90 ~~pl~~qi~---------g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~ 130 (300)
T TIGR01037 90 PTPLIASVY---------GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPH 130 (300)
T ss_pred CCcEEEEee---------cCCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence 368888884 33344 444444432 13789999998764
No 169
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=52.81 E-value=28 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.7
Q ss_pred ccCchhHHHHhhhhhhccccEEEechh
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITASY 77 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy 77 (266)
+.+++.+.++.+.|.++|+..+.-++|
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~~~~ 49 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRANGV 49 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEcCCH
Confidence 578889999999999999998875443
No 170
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=52.71 E-value=10 Score=35.20 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.9
Q ss_pred cccCchhHHHHhhhhhhccccEEEec
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.++..+.|.+.+..+-+||||+|+|.
T Consensus 285 ~~d~~~~~~Esl~~ikRAGAd~IiTY 310 (320)
T cd04823 285 WLDEDKVMLESLLAFKRAGADGILTY 310 (320)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEeec
Confidence 35777899999999999999999974
No 171
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=52.63 E-value=11 Score=35.06 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred ccCchhHHHHhhhhhhccccEEEec
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++....|.+.+..+-+||||+|+|.
T Consensus 281 id~~~~~~Esl~~~kRAGAd~IiTY 305 (314)
T cd00384 281 IDEERVVLESLTSIKRAGADLIITY 305 (314)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEee
Confidence 5777899999999999999999974
No 172
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=52.62 E-value=41 Score=28.55 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=23.8
Q ss_pred cccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHH
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 94 (266)
.++.|+-...+++ |-+.|||++.|-= +..+++.|++.+++
T Consensus 4 Dl~~~~gr~~l~~--L~~~ADV~i~n~r---pg~~~~lGl~~~~l 43 (191)
T PF02515_consen 4 DLKSPEGRAALRR--LLATADVVIENFR---PGVLERLGLDYEAL 43 (191)
T ss_dssp ETTSHHHHHHHHH--HHHT-SEEEEESS---TTHHHHTT-SHHHH
T ss_pred eCcCHHHHHHHHH--HHHhCCEEEECCc---hhhhHhcCCCHHHH
Confidence 3566665444443 3457999999865 55567779986543
No 173
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=52.39 E-value=11 Score=35.14 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.1
Q ss_pred cccCchhHHHHhhhhhhccccEEEec
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.++..+.|.+.+..+-+||||+|+|.
T Consensus 286 ~iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 286 AFDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEee
Confidence 36778899999999999999999974
No 174
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=52.13 E-value=28 Score=30.82 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=34.3
Q ss_pred HHhhhhhHHhhhcCCCeEEeeccc---hhhhHHHHHHHHhhcCccccccee
Q 024544 168 EFHRRRVLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFS 215 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~Pv~iS 215 (266)
..|.+++...+++|.|++. |... +.++.+.+++++++.+ .++++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~g--~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSSG--RKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhcC--CEEEEC
Confidence 5788999999999999998 6553 6678888888888755 444443
No 175
>PRK15452 putative protease; Provisional
Probab=51.86 E-value=31 Score=33.65 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=32.6
Q ss_pred hhHHhhhcCCCeEEee----------ccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 173 RVLILANSGADLIAFE----------TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 173 qi~~l~~~gvD~i~~E----------T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
++++.+++|+|.+.+. .-.+.+|++.+++.+++.+ +.+++++.
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~kvyvt~n 67 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KKFYVVVN 67 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CEEEEEec
Confidence 5567778999999993 2334578899999888865 78888764
No 176
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=51.64 E-value=11 Score=35.10 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cccCchhHHHHhhhhhhccccEEEec
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.++..+.|.+.+..+-+||||+|+|.
T Consensus 289 ~~d~~~~~~Esl~~~kRAGAd~IiTY 314 (322)
T PRK13384 289 ALDERAVVTETLGGLKRAGADLIVSY 314 (322)
T ss_pred CccHHHHHHHHHHHHHHcCCCEEeeh
Confidence 36778899999999999999999974
No 177
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.26 E-value=29 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=40.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
|+...+++|+|.|++..|+ +++++.+++.++.. . .+-. .-|-++..+..+.. .+++.|-+-.
T Consensus 205 e~~ea~~~gaDiImLDn~s-~e~l~~av~~~~~~---~--~lea--------SGgI~~~ni~~yA~--tGVD~Is~ga 266 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDNFS-LDDLREGVELVDGR---A--IVEA--------SGNVNLNTVGAIAS--TGVDVISVGA 266 (281)
T ss_pred HHHHHHhcCCCEEEECCCC-HHHHHHHHHHhCCC---e--EEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 3444567899999999997 78999999877631 2 1222 13567766666544 4677665544
No 178
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=50.65 E-value=45 Score=28.27 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=39.4
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN 249 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiN 249 (266)
+++.+.++|+|++.+=-.........+++.+++.+ +|+++.+.- ..++++++.. +.+ .+++.|+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~-------~~t~~~~~~~-~~~-~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLIN-------VKDKVKRAKE-LKE-LGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecC-------CCChHHHHHH-HHH-cCCCEEEEc
Confidence 56778889999997544433334567777788765 788875411 1333444432 232 256666664
No 179
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.49 E-value=1.9e+02 Score=26.03 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=25.2
Q ss_pred CchhHHHHhhhhhhc-cccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDA-GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~A-GAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+..++.-+.++++ |++-|..+--..-... ++.+|-.++.+.+++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~-----Lt~~Er~~~~~~~~~ 65 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFL-----LSVEERKQIAEIVAE 65 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCccc-----CCHHHHHHHHHHHHH
Confidence 345666666777788 9997766543322222 344444455444444
No 180
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=50.15 E-value=2.7e+02 Score=27.62 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=74.0
Q ss_pred CCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHH
Q 024544 20 GGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLR 99 (266)
Q Consensus 20 ~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~ 99 (266)
+++++.|-| |.++...|- ..=.||.+.+++ -..|+||+..-- .+++ +..+.+++++-++
T Consensus 82 ~g~ilTDSG-gfQv~s~g~-----------~~ltpe~~i~~Q---~~iGsDI~~~LD-~~t~-----~~~~~~~~~~sv~ 140 (487)
T PRK13533 82 DGPIMTDSG-SYQLLVYGD-----------VEVTNEEILEFQ---RKIGSDIGVPLD-IPTP-----PDVDYEEAEEELE 140 (487)
T ss_pred CCCeEeccC-CcEEEEcCC-----------ccCCHHHHHHHH---HHhCCCEEeECC-ccCC-----CCCCHHHHHHHHH
Confidence 566666666 555544431 123567776664 467999998764 2222 2234456777777
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhh
Q 024544 100 RSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILAN 179 (266)
Q Consensus 100 ~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~ 179 (266)
.-.+-|+++.+.+.+ .. ..+. ||.- |- ...+++... ++.+.+
T Consensus 141 rT~rwa~~~~~~~~~----------------~~-~~l~---giVQ----------Gg-----~~~dLR~~s---a~~l~~ 182 (487)
T PRK13533 141 ETLERLEEAAELIQD----------------GD-MLWV---APVQ----------GG-----TYPDLREES---AREASK 182 (487)
T ss_pred HHHHHHHHHHHhhhc----------------cC-ccEE---EEec----------CC-----CCHHHHHHH---HHHHHh
Confidence 778888887654310 11 1222 3321 00 112333333 445566
Q ss_pred cCCCeEEeeccchh------hhHHHHHHHHhh-cCcccccce
Q 024544 180 SGADLIAFETIPNK------LEAKAYAELLEE-EGITIPAWF 214 (266)
Q Consensus 180 ~gvD~i~~ET~~~~------~E~~a~~~a~~~-~~~~~Pv~i 214 (266)
.+.|.+.+-.+.-. .++..++..+++ .++++|.++
T Consensus 183 ~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL 224 (487)
T PRK13533 183 LGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHL 224 (487)
T ss_pred CCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEE
Confidence 68999998865433 455566665554 344667654
No 181
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=49.88 E-value=40 Score=31.37 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=30.3
Q ss_pred hhhhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhhcCcccccce
Q 024544 171 RRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
.++++.++++|+|+|.+-+ ..+.......++.+++..+++|+++
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE
Confidence 4578889999999998864 3334556667777777543466665
No 182
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=49.82 E-value=41 Score=31.78 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEe-----eccchhhhHHHHHHHHhhcC---cccccceeeecCCCceeecCchHHHhh
Q 024544 163 LETLKEFHRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~-----ET~~~~~E~~a~~~a~~~~~---~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
.+++...|++.++.|.++||+.|=+ -+..+..+...+.++.+... ++.++.++..+.+ ..+++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~---------~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGS---------LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccc---------hHHHH
Confidence 5678889999999999999998832 23333345555556655431 1345666654431 23445
Q ss_pred hHHhhhhhhhhcccccCC
Q 024544 235 SIADSCEQVVAVGINCTS 252 (266)
Q Consensus 235 ~~~~~~~~~~avGiNC~~ 252 (266)
..+.+ .+++++++-++.
T Consensus 248 ~~l~~-l~Vd~l~le~~~ 264 (360)
T cd03312 248 DLLAS-LPVDGLHLDLVR 264 (360)
T ss_pred HHHHc-CCCCEEEEEecC
Confidence 55555 578888888875
No 183
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=49.76 E-value=32 Score=31.09 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=39.5
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
|+....+.|+|.|.+..|. .++++.+++.++. .+|+..+- |-+++.+..++. .++++|.+
T Consensus 190 ea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~~---~ipi~AsG----------GI~~~ni~~~a~--~Gvd~Isv 249 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMK-PEEIKEAVQLLKG---RVLLEASG----------GITLDNLEEYAE--TGVDVISS 249 (265)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC---CCcEEEEC----------CCCHHHHHHHHH--cCCCEEEe
Confidence 3444457899999999987 4788888876543 25655433 566666655444 46777766
No 184
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=49.75 E-value=12 Score=34.20 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.5
Q ss_pred ccCchhHHHHhhhhhhccccEEEec
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++-...|-+-|..|.+||||||+|.
T Consensus 303 ~Dlk~~vmEsm~~frRAGAdiIlTY 327 (340)
T KOG2794|consen 303 FDLKKVVMESMLGFRRAGADIILTY 327 (340)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEee
Confidence 4556688999999999999999984
No 185
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.60 E-value=1.8e+02 Score=25.52 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEeeccch--hhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFETIPN--KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~--~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
...+.+.+..++.++.+.+.||.+ .+|+++. +.....+.+.++..+ -| ++.+.++..-....|.++.+.+.
T Consensus 126 ~~~~~~~~~l~~l~~~a~~~gv~l-~lE~~~~~~~~~~~~~~~l~~~v~--~~-~~~~~~D~~h~~~~~~~~~~~l~ 198 (284)
T PRK13210 126 ETRQRFIEGLAWAVEQAAAAQVML-AVEIMDTPFMNSISKWKKWDKEID--SP-WLTVYPDVGNLSAWGNDVWSELK 198 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEE-EEEecCccccCCHHHHHHHHHHcC--CC-ceeEEecCChhhhcCCCHHHHHH
Confidence 456677777888788888889954 5698643 222233444455433 34 34555443222223555555554
No 186
>PTZ00344 pyridoxal kinase; Provisional
Probab=48.70 E-value=83 Score=28.49 Aligned_cols=77 Identities=8% Similarity=-0.076 Sum_probs=43.5
Q ss_pred CchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhc---CcccccceeeecCCCceeecCchHHHhhh
Q 024544 159 DAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEE---GITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 159 ~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~---~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
..++.+++.++.+...+......+|.++.-.+|+.+-...+.+.+++. +++.++++--.+.+++++..+..+.+++.
T Consensus 55 ~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~ 134 (296)
T PTZ00344 55 HRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYR 134 (296)
T ss_pred eeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHH
Confidence 346666666544432221223468999999999988888888888643 21123332211234455555655555544
No 187
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=48.47 E-value=2.1e+02 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=17.1
Q ss_pred CchhHHHHhhhhhhccccEEEech
Q 024544 53 SPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
+.+..++.-+-+++.|.+-|..+-
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~G 43 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVG 43 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC
Confidence 445667777777789999777653
No 188
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=48.18 E-value=57 Score=29.45 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=44.8
Q ss_pred hhhhhHHhhhcCCCeEEe------------eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH
Q 024544 170 HRRRVLILANSGADLIAF------------ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~------------ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~ 237 (266)
|...++.+.++|+|.|=+ +-..+...+..+++++++.- ++|+++-++... +.+.+.+..+
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~-------~~~~~~a~~~ 175 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNV-------TDIVEIARAA 175 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCc-------hhHHHHHHHH
Confidence 444566677789998855 22345666777888888753 589998875321 1344555555
Q ss_pred hhhhhhhhcc-cccC
Q 024544 238 DSCEQVVAVG-INCT 251 (266)
Q Consensus 238 ~~~~~~~avG-iNC~ 251 (266)
.+ .++++|- +|++
T Consensus 176 ~~-~G~d~i~~~nt~ 189 (296)
T cd04740 176 EE-AGADGLTLINTL 189 (296)
T ss_pred HH-cCCCEEEEECCC
Confidence 54 4666543 4553
No 189
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.91 E-value=43 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=28.2
Q ss_pred HhhhhhHHhhhcCCCeEEee-----ccchhhhHHHHHHHHhhcCcccccce
Q 024544 169 FHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-----T~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
...++++.+.++|+|.|-+= .+++...-..+++.+++.. +.|+.+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v 61 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDV 61 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEE
Confidence 35567888899999999874 4455544445555665532 456533
No 190
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=47.73 E-value=1.7e+02 Score=27.58 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=27.1
Q ss_pred cccCchhHHH-----------HhhhhhhccccE-EEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 50 LVSSPHLVRK-----------VHLDYLDAGANI-IITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 50 ll~~Pe~V~~-----------iH~~Yl~AGAdi-I~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.++||.|.+ ..+.++++||+. |....|-++..- ++++..+++..-..+
T Consensus 198 l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~-----lsp~~f~ef~~P~~k 258 (378)
T cd03308 198 LRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPF-----LRPKQFEKFYWPSFK 258 (378)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCc-----cCHHHHHHHHHHHHH
Confidence 4578875444 344566779995 555666554433 344555554443333
No 191
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=47.37 E-value=58 Score=29.06 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=44.4
Q ss_pred hhHHhhhcC-CCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC
Q 024544 173 RVLILANSG-ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (266)
Q Consensus 173 qi~~l~~~g-vD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~ 251 (266)
.++.+.+.| ||++=+|--.....++.++..+++.+ .++++|+..- ..+++-+.+.+.+..+.. .+++.+=+-+.
T Consensus 100 ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~--~kvI~S~H~f--~~tP~~~~l~~~~~~~~~-~gaDivKia~~ 174 (253)
T PRK02412 100 LIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHG--VKVVLSYHDF--EKTPPKEEIVERLRKMES-LGADIVKIAVM 174 (253)
T ss_pred HHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcC--CEEEEeeCCC--CCCcCHHHHHHHHHHHHH-hCCCEEEEEec
Confidence 345556667 89999996554455666666666644 7899998521 122222233344443333 34455445443
Q ss_pred --Ccchhhhh
Q 024544 252 --SPRFIHGL 259 (266)
Q Consensus 252 --~p~~~~~~ 259 (266)
++.....+
T Consensus 175 a~~~~D~~~l 184 (253)
T PRK02412 175 PQSEQDVLTL 184 (253)
T ss_pred CCCHHHHHHH
Confidence 34444433
No 192
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.16 E-value=51 Score=28.58 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHhhhcCCCeEEeec-cch--------------hhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhh
Q 024544 175 LILANSGADLIAFET-IPN--------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET-~~~--------------~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~ 239 (266)
+.+.+.|+|.+-+-. +++ +++++.+++.+++.+ ..+ .|.+.+..+... ..+.+++..+.+
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g--~~v--~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG--YEV--AFGCEDASRTDP-EELLELAEALAE 148 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT--SEE--EEEETTTGGSSH-HHHHHHHHHHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC--Cce--EeCccccccccH-HHHHHHHHHHHH
Confidence 445678999886653 555 667777777788765 333 666655543321 233344444444
Q ss_pred hhhhhhcccc----cCCcchhhhhheeee
Q 024544 240 CEQVVAVGIN----CTSPRFIHGLILSVR 264 (266)
Q Consensus 240 ~~~~~avGiN----C~~p~~~~~~l~~l~ 264 (266)
.+++.|.+. +..|..+..+++.++
T Consensus 149 -~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 149 -AGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp -HT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred -cCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 466766664 235777777776654
No 193
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=46.88 E-value=13 Score=34.69 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.7
Q ss_pred ccCchhHHHHhhhhhhccccEEEec
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++....|.+.+..+-+||||+|+|.
T Consensus 291 ~d~~~~~~Esl~~~kRAGAd~IiTY 315 (324)
T PF00490_consen 291 IDEKRVVLESLLSIKRAGADIIITY 315 (324)
T ss_dssp S-HHHHHHHHHHHHHHHT-SEEEET
T ss_pred cchhhHHHHHHHHHHHcCCCEEEee
Confidence 5777899999999999999999974
No 194
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=46.86 E-value=39 Score=31.59 Aligned_cols=76 Identities=12% Similarity=-0.051 Sum_probs=50.6
Q ss_pred hhhhHHhhhcCCCeEE---eeccc------------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 171 RRRVLILANSGADLIA---FETIP------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~---~ET~~------------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
+++++.|.++|+|.+. +||.. +.++...+++.+++.| +++..++-+ -.|++.++-+.
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~G--i~~~sg~i~------GlgEt~edrv~ 221 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELG--LKTNATMLY------GHIETPAHRVD 221 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcC--CCcceEEEe------eCCCCHHHHHH
Confidence 4567888999999774 78863 2334446777788866 777766654 24888888777
Q ss_pred HHhh--hhhhhhcccccCCcc
Q 024544 236 IADS--CEQVVAVGINCTSPR 254 (266)
Q Consensus 236 ~~~~--~~~~~avGiNC~~p~ 254 (266)
.+.. ..++.-.|++..-|.
T Consensus 222 ~l~~Lr~l~~~~~~f~~fiP~ 242 (351)
T TIGR03700 222 HMLRLRELQDETGGFQAFIPL 242 (351)
T ss_pred HHHHHHHhhHhhCCceEEEee
Confidence 6532 245666777776543
No 195
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=46.80 E-value=1.7e+02 Score=24.37 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=10.6
Q ss_pred hHHhhhcCCCeEEeec
Q 024544 174 VLILANSGADLIAFET 189 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET 189 (266)
+....+.|+|++.+-.
T Consensus 109 ~~~a~~~g~dyi~~~~ 124 (196)
T TIGR00693 109 LAEAEAEGADYIGFGP 124 (196)
T ss_pred HHHHhHcCCCEEEECC
Confidence 3345567999997533
No 196
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=46.67 E-value=3.1e+02 Score=27.37 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=41.7
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCccccc-ceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPA-WFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv-~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|..+.++.+.++|+|-|.+= |+ ..+.++..+++.+++. .|. .++|-|.++ .|..+..++..+.
T Consensus 155 ~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~---~~~~~i~vH~HND----~GlAvANslaAv~ 221 (526)
T TIGR00977 155 YALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS---LKQPQLGIHAHND----SGTAVANSLLAVE 221 (526)
T ss_pred HHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh---CCCCEEEEEECCC----CChHHHHHHHHHH
Confidence 34445566778999987554 44 4677888889888864 333 479998877 4665555555444
No 197
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.41 E-value=43 Score=30.27 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=45.4
Q ss_pred hHHhhhcCCCeEEee-ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhh---hHHhhhhhhhhcccc
Q 024544 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA---SIADSCEQVVAVGIN 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~---~~~~~~~~~~avGiN 249 (266)
++...+.|+|.|-+- ..++++.++.+++.+|+.+ +.+.+.+.+... +..+.+... ..+.+ .+++.|.+-
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~----~~~~~~~~~~~~~~~~~-~Ga~~i~l~ 169 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGS----PVHTLEYYVKLAKELED-MGADSICIK 169 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCC----CCCCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 455667899987654 4456777888888888876 444333322222 122333333 33333 344444331
Q ss_pred ----cCCcchhhhhheeee
Q 024544 250 ----CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ----C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 170 DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 170 DMAGLLTPYAAYELVKALK 188 (275)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 123777777666554
No 198
>PRK07094 biotin synthase; Provisional
Probab=45.62 E-value=49 Score=30.28 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=44.2
Q ss_pred hhhHHhhhcCCCeEE--eeccc-----------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH-
Q 024544 172 RRVLILANSGADLIA--FETIP-----------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA- 237 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~--~ET~~-----------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~- 237 (266)
+.++.|.++|+|.+. +||.. +.++...+++.+++.+ +++...|.+- ..|++.++....+
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~G--i~v~~~~iiG-----lpget~ed~~~~l~ 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELG--YEVGSGFMVG-----LPGQTLEDLADDIL 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC--CeecceEEEE-----CCCCCHHHHHHHHH
Confidence 345667788998764 47762 4556666667777765 5666555542 1355666555443
Q ss_pred --hhhhhhhhcccccCCc
Q 024544 238 --DSCEQVVAVGINCTSP 253 (266)
Q Consensus 238 --~~~~~~~avGiNC~~p 253 (266)
.+ .++..++++-..|
T Consensus 203 ~l~~-l~~~~v~~~~~~P 219 (323)
T PRK07094 203 FLKE-LDLDMIGIGPFIP 219 (323)
T ss_pred HHHh-CCCCeeeeecccc
Confidence 43 4666777776543
No 199
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.61 E-value=2.3e+02 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=17.3
Q ss_pred CchhHHHHhhhhhhccccEEEec
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
+.+.+++.-+.+++.|+|-|..+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~ 46 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAA 46 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC
Confidence 45677888888889999966644
No 200
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.45 E-value=2.5e+02 Score=25.97 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=42.0
Q ss_pred HHHhhhhhHHhhhcCCCeEEeec-cch---------hhhHHHHHHHHhhcC----cccccceeeecCCCceeecCchHHH
Q 024544 167 KEFHRRRVLILANSGADLIAFET-IPN---------KLEAKAYAELLEEEG----ITIPAWFSFNSKDGINVVSGDSILE 232 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET-~~~---------~~E~~a~~~a~~~~~----~~~Pv~iSf~~~~~~~l~~G~~~~~ 232 (266)
.+-|...++.+.+ .+|+|-+.. .|+ .+.+..+++++++.- .++|+++-++...+ -+.+.+
T Consensus 147 ~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~-----~~~~~~ 220 (327)
T cd04738 147 VEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLS-----DEELED 220 (327)
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCC-----HHHHHH
Confidence 3345555555543 478876652 232 245667777777642 13899998864211 123445
Q ss_pred hhhHHhhhhhhhhcc-ccc
Q 024544 233 CASIADSCEQVVAVG-INC 250 (266)
Q Consensus 233 a~~~~~~~~~~~avG-iNC 250 (266)
.+..+.+ .++++|= .|.
T Consensus 221 ia~~l~~-aGad~I~~~n~ 238 (327)
T cd04738 221 IADVALE-HGVDGIIATNT 238 (327)
T ss_pred HHHHHHH-cCCcEEEEECC
Confidence 5555544 4677655 354
No 201
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=45.20 E-value=2.4e+02 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=16.3
Q ss_pred CchhHHHHhhhhhhccccEEEec
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
+.+.+++.-+.+++.|++-|..+
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~ 41 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAA 41 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 45667777777888999865443
No 202
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.97 E-value=50 Score=25.11 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=29.5
Q ss_pred hHHhhhcCCCeEEeec--cchhhhHHHHHHHHhhcCcccccceee
Q 024544 174 VLILANSGADLIAFET--IPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET--~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
++.+.+..+|++.+=+ .++..+++.+++.+|+..++.++++--
T Consensus 44 ~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 44 VEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3445556789998875 567778888888877765556666543
No 203
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=44.87 E-value=17 Score=33.99 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.2
Q ss_pred ccCchhHHHHhhhhhhccccEEEec
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++....|.+.+..+-+||||+|+|.
T Consensus 289 ~D~~~~~~Esl~~~kRAGAd~IiTY 313 (323)
T PRK09283 289 IDEERVVLESLLSIKRAGADGILTY 313 (323)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEec
Confidence 5667799999999999999999974
No 204
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=44.80 E-value=26 Score=34.82 Aligned_cols=32 Identities=34% Similarity=0.225 Sum_probs=27.3
Q ss_pred cCCCeEEeec-cchhhhHHHHHHHHhhcCcccc
Q 024544 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITIP 211 (266)
Q Consensus 180 ~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~P 211 (266)
..+|+||.|| -|++.+++...+.+++.-|++.
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~~P~k~ 410 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSKFPDQL 410 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 4689999999 9999999999999998654543
No 205
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.75 E-value=87 Score=28.75 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=46.1
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEe-ec-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAF-ET-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+. ++.+++.+++.|||.|++ -| .-+.+|-+.+++++.+ .+.++||++... ..+..++
T Consensus 26 iD~~~----l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~a 92 (309)
T cd00952 26 VDLDE----TARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDT 92 (309)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHH
Confidence 56544 445788888999999875 33 2356677777776554 333689987773 2344666
Q ss_pred hhHHhhh--hhhhhccc
Q 024544 234 ASIADSC--EQVVAVGI 248 (266)
Q Consensus 234 ~~~~~~~--~~~~avGi 248 (266)
++.++.. .+++++.+
T Consensus 93 i~~a~~A~~~Gad~vlv 109 (309)
T cd00952 93 IARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 6655432 34454443
No 206
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=44.64 E-value=73 Score=30.15 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=21.1
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE 188 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E 188 (266)
.+.+++.+.|++|++...+.|...|+.-
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMA 152 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMA 152 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE--
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 5889999999999999999999999854
No 207
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=44.30 E-value=65 Score=27.76 Aligned_cols=72 Identities=22% Similarity=0.160 Sum_probs=39.4
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeec------CchHHHhhhHHhhhhhhhhcc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVS------GDSILECASIADSCEQVVAVG 247 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~------G~~~~~a~~~~~~~~~~~avG 247 (266)
++.+.+.|+|.+++-|.. +.+...+.+++++.+ ..++++|+.++.+..... ..++.+.+..+.+ .+++.+-
T Consensus 88 ~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~~ii 164 (234)
T cd04732 88 IERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVKAII 164 (234)
T ss_pred HHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCCEEE
Confidence 334445799999887665 344455555566654 347888877654332222 2344455555543 3444443
Q ss_pred c
Q 024544 248 I 248 (266)
Q Consensus 248 i 248 (266)
+
T Consensus 165 i 165 (234)
T cd04732 165 Y 165 (234)
T ss_pred E
Confidence 4
No 208
>PLN02892 isocitrate lyase
Probab=44.28 E-value=29 Score=34.86 Aligned_cols=32 Identities=38% Similarity=0.360 Sum_probs=27.4
Q ss_pred cCCCeEEeec-cchhhhHHHHHHHHhhcCcccc
Q 024544 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITIP 211 (266)
Q Consensus 180 ~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~P 211 (266)
..+|+||+|| -|++.+++...+.+++.-|++.
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k~ 431 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHPEIM 431 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 4689999999 9999999999999998655553
No 209
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=44.27 E-value=42 Score=30.14 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.7
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeec
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
.|.+.+...++.|+.++.--|=.+.+|.+.+.+++++.+ +|++++..+
T Consensus 80 ~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g--~~v~~a~Nf 127 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG--IAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC--ccEEEECcc
Confidence 466678888889999998666666778888888877754 677775543
No 210
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.11 E-value=34 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=25.2
Q ss_pred ccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 209 TIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 209 ~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
+.|+++|+... +-+.+.+++..+.+ .++++|=+||++|.
T Consensus 89 ~~p~ivsi~g~------~~~~~~~~a~~~~~-~G~d~iElN~~cP~ 127 (296)
T cd04740 89 GTPVIASIAGS------TVEEFVEVAEKLAD-AGADAIELNISCPN 127 (296)
T ss_pred CCcEEEEEecC------CHHHHHHHHHHHHH-cCCCEEEEECCCCC
Confidence 58999998532 11234455555554 47889999998764
No 211
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.11 E-value=2.6e+02 Score=25.79 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=36.6
Q ss_pred hhhHHhhhcCCCeEEeecc-----ch-----h-hhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh
Q 024544 172 RRVLILANSGADLIAFETI-----PN-----K-LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~-----~~-----~-~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~ 240 (266)
+.++.+.++|+|.|-+-.. +. . +....+++.+++.. ++|+++-++.. -+.+.+.+..+.+
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~-------~~~~~~~a~~l~~- 188 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPY-------FSNLANMAKRLDA- 188 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCC-------chhHHHHHHHHHH-
Confidence 3445566678998866321 11 1 12445666666643 68999887531 1234555555554
Q ss_pred hhhhhc
Q 024544 241 EQVVAV 246 (266)
Q Consensus 241 ~~~~av 246 (266)
.++++|
T Consensus 189 ~G~dgI 194 (334)
T PRK07565 189 AGADGL 194 (334)
T ss_pred cCCCeE
Confidence 456654
No 212
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.05 E-value=31 Score=30.76 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=45.7
Q ss_pred hHHhhhcCCCeEEee-ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccc-
Q 024544 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGIN- 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiN- 249 (266)
++...+.|+|.+-+- ..++..+++.+++.+++.+ ..+.+++ .+.. ..+++.....++.. .+++.|.+-
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~--~~~~----~~~~~~~~~~~~~~~~~G~d~i~l~D 162 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFL--MMSH----MASPEELAEQAKLMESYGADCVYVTD 162 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEE--Eecc----CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 344557899988654 4455667788888888866 3444333 2221 23344443333321 345555442
Q ss_pred ---cCCcchhhhhheeee
Q 024544 250 ---CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ---C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 163 T~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 163 SAGAMLPDDVRERVRALR 180 (263)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 234777777776654
No 213
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=43.78 E-value=18 Score=33.62 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.3
Q ss_pred ccCchhHHHHhhhhhhccccEEEec
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++....|.+.+..|-+||||+|+|.
T Consensus 294 ide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 294 IDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred cchHHHHHHHHHHHHhcCCCEEEee
Confidence 5777799999999999999999974
No 214
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=43.73 E-value=77 Score=28.61 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEE-eec-----cchhhhHHHHHHHHhhc-CcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIA-FET-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~-~ET-----~~~~~E~~a~~~a~~~~-~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++.+. ++..++.+++.|||.++ .-| .-+.+|=+.+++.+.+. ..++|+++... +.+..++
T Consensus 19 iD~~~----l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 85 (292)
T PRK03170 19 VDFAA----LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEA 85 (292)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHH
Confidence 56554 44477888889999987 333 34566777777765543 33578886663 3345666
Q ss_pred hhHHhh
Q 024544 234 ASIADS 239 (266)
Q Consensus 234 ~~~~~~ 239 (266)
++.++.
T Consensus 86 i~~a~~ 91 (292)
T PRK03170 86 IELTKF 91 (292)
T ss_pred HHHHHH
Confidence 665543
No 215
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=43.67 E-value=43 Score=31.13 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=40.1
Q ss_pred hhHHhhh------cCCCeEEeecc--------chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 173 RVLILAN------SGADLIAFETI--------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 173 qi~~l~~------~gvD~i~~ET~--------~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|+...++ +|+|.|++..| .++++++.+++.++. ..| +.. .-|-+++.+..+..
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~--lEa--------SGGIt~~ni~~yA~ 281 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFE--TEA--------SGNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cce--EEE--------ECCCCHHHHHHHHH
Confidence 3444556 89999999999 368888888876653 233 222 13566766655544
Q ss_pred hhhhhhhccccc
Q 024544 239 SCEQVVAVGINC 250 (266)
Q Consensus 239 ~~~~~~avGiNC 250 (266)
.+++.|-+-.
T Consensus 282 --tGVD~Is~Ga 291 (308)
T PLN02716 282 --TGVTYISSGA 291 (308)
T ss_pred --cCCCEEEeCc
Confidence 4677665544
No 216
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=43.55 E-value=2.5e+02 Score=25.45 Aligned_cols=29 Identities=10% Similarity=-0.129 Sum_probs=20.2
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhh
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATI 81 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~ 81 (266)
+|+...++-+..-++|||.|.-|-..-+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 66655555555556799999999886565
No 217
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=43.37 E-value=88 Score=28.47 Aligned_cols=66 Identities=17% Similarity=0.027 Sum_probs=40.6
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHh-hcCcccccceeeecCCCceeecCchHHHh
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLE-EEGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~-~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
++++.++ .+++.+++.|||.|++= | .-+.+|=+.+++.+. ....++||++... +.+..++
T Consensus 18 iD~~~l~----~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~~a 84 (294)
T TIGR02313 18 IDEEALR----ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHDET 84 (294)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHHHH
Confidence 6665554 46788888999988642 2 224556666666443 3333588886662 3456677
Q ss_pred hhHHhh
Q 024544 234 ASIADS 239 (266)
Q Consensus 234 ~~~~~~ 239 (266)
++.+++
T Consensus 85 i~~a~~ 90 (294)
T TIGR02313 85 LELTKF 90 (294)
T ss_pred HHHHHH
Confidence 766654
No 218
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=43.08 E-value=2.3e+02 Score=24.88 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=23.6
Q ss_pred hHHhhhcCCCeEEeeccch-----hhhHHHHHHHHhhcCcccccceeeec
Q 024544 174 VLILANSGADLIAFETIPN-----KLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~-----~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
++.+.+.|+|.+++-++.. -.....+-++.+.. ++|++++.-+
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv 206 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGA 206 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCC
Confidence 3445678999887744332 11223333333332 4899887744
No 219
>PLN02270 phospholipase D alpha
Probab=42.63 E-value=1e+02 Score=32.53 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=64.3
Q ss_pred HHHHhhhhhhc--ccc--EEEechhhhhhhhh-hccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccc
Q 024544 57 VRKVHLDYLDA--GAN--IIITASYQATIQGF-EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (266)
Q Consensus 57 V~~iH~~Yl~A--GAd--iI~TnTy~a~~~~l-~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (266)
.+.||..|++| .|+ |-++|-|-.+.... ...++..+.+...|.-..+|+.+.+++..+. .+
T Consensus 497 ~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~--------------e~ 562 (808)
T PLN02270 497 DRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAG--------------EK 562 (808)
T ss_pred hhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCC--------------CC
Confidence 47799999987 455 99999997765432 2234433334445666667777777665432 34
Q ss_pred cceEEEEecccccceecCCCccccCCCCc--hhHHHHHHHhhhhhHHhhhcCC
Q 024544 132 RPVLVAASVGSYGAYLADGSEYSGDYGDA--VSLETLKEFHRRRVLILANSGA 182 (266)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~--~~~~e~~~~~~~qi~~l~~~gv 182 (266)
-.++|.--+=|-|. +.. +....- -....+...|...+++|.++|+
T Consensus 563 f~VyIViP~~peG~-~e~-----~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~ 609 (808)
T PLN02270 563 FTVYVVVPMWPEGI-PES-----GSVQAILDWQRRTMEMMYKDVIQALRAKGL 609 (808)
T ss_pred CEEEEEECCCCCCC-ccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 57898887776543 110 000000 1344566777778888888776
No 220
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.55 E-value=2.9e+02 Score=25.77 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=42.6
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeec--cchhhh--HHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFET--IPNKLE--AKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET--~~~~~E--~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~ 237 (266)
+.++..+ .++.|.+.|+|+|-+=. .....+ -...++.+|+. .++||+++-.+ +.+++-..+
T Consensus 239 ~~ee~~~----~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i----------~~~~a~~~l 303 (338)
T cd02933 239 PEATFSY----LAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA-FKGPLIAAGGY----------DAESAEAAL 303 (338)
T ss_pred CHHHHHH----HHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH-cCCCEEEECCC----------CHHHHHHHH
Confidence 5555443 56777788999997621 111000 01122334443 24787765432 144554555
Q ss_pred hhhhhhhhccccc---CCcchhhhhh
Q 024544 238 DSCEQVVAVGINC---TSPRFIHGLI 260 (266)
Q Consensus 238 ~~~~~~~avGiNC---~~p~~~~~~l 260 (266)
.. ..++.|++-= ..|+.+.++.
T Consensus 304 ~~-g~~D~V~~gR~~ladP~~~~k~~ 328 (338)
T cd02933 304 AD-GKADLVAFGRPFIANPDLVERLK 328 (338)
T ss_pred Hc-CCCCEEEeCHhhhhCcCHHHHHh
Confidence 54 4567777633 4577666654
No 221
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=42.21 E-value=56 Score=28.84 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=48.4
Q ss_pred EeeccchhhhHHHHHHHHhhc--CcccccceeeecCCCceeecCchHHHhhh---HHh-hhhhhhhcccccCCcc
Q 024544 186 AFETIPNKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILECAS---IAD-SCEQVVAVGINCTSPR 254 (266)
Q Consensus 186 ~~ET~~~~~E~~a~~~a~~~~--~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~---~~~-~~~~~~avGiNC~~p~ 254 (266)
+++|+-++.-+.++-+++++. +..++|+|-+.+..+. ...|.+++++.. .+. .++++...|+-|..|.
T Consensus 92 ~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~-~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~ 165 (227)
T cd06822 92 MVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEE-SKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSF 165 (227)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-CCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCC
Confidence 469999998888888887776 6568899999875422 257877665544 443 4456778899997653
No 222
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=41.90 E-value=1.9e+02 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred ccCchhHHHHhhhhhhccccEEEechhhh
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITASYQA 79 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a 79 (266)
.+=|..+....+.+.++|||.++.+.|..
T Consensus 59 ~DIg~tv~~~~~~~~~~gad~~Tvh~~~G 87 (216)
T cd04725 59 GDIPNTVAAAAEALLGLGADAVTVHPYGG 87 (216)
T ss_pred CchHHHHHHHHHHHHhcCCCEEEECCcCC
Confidence 45688999999999999999999998854
No 223
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=41.56 E-value=1.1e+02 Score=27.42 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC------CceeecCchHHHhhhHHhhh--
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD------GINVVSGDSILECASIADSC-- 240 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~------~~~l~~G~~~~~a~~~~~~~-- 240 (266)
.-+.-++.+.++|+|.+-+|-=++- -++ +++.+-+. ++||+--+-+.+ +|--..|.++..+++.++.+
T Consensus 118 a~knAv~vmk~~g~~~vK~EgGs~~-~~~-~~~~l~er--gipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmq 193 (306)
T KOG2949|consen 118 AVKNAVRVMKEGGMDAVKLEGGSNS-RIT-AAKRLVER--GIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQ 193 (306)
T ss_pred HHHHHHHHHHhcCCceEEEccCcHH-HHH-HHHHHHHc--CCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHH
Confidence 3444577888899999999976622 222 23333332 478875543322 23334677888887766432
Q ss_pred ---hhhhhcccccCCcchhhh
Q 024544 241 ---EQVVAVGINCTSPRFIHG 258 (266)
Q Consensus 241 ---~~~~avGiNC~~p~~~~~ 258 (266)
.+...+-+.|..|.....
T Consensus 194 Lqk~Gc~svvlECvP~~~A~~ 214 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPPPVAAA 214 (306)
T ss_pred HHhcccceEeeecCChHHHHH
Confidence 466678889997644433
No 224
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=41.47 E-value=47 Score=28.06 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=31.7
Q ss_pred hhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
.+.|+|++.+ +|.-......++.++...+.+|++.+ .|-+.+++...+.. +++++++
T Consensus 114 ~~~Gad~i~~--~p~~~~g~~~~~~l~~~~~~~p~~a~----------GGI~~~n~~~~~~~--G~~~v~v 170 (190)
T cd00452 114 LELGADIVKL--FPAEAVGPAYIKALKGPFPQVRFMPT----------GGVSLDNAAEWLAA--GVVAVGG 170 (190)
T ss_pred HHCCCCEEEE--cCCcccCHHHHHHHHhhCCCCeEEEe----------CCCCHHHHHHHHHC--CCEEEEE
Confidence 3589999987 44333345556666543223555433 36666666555542 4555554
No 225
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=41.29 E-value=2.9e+02 Score=25.47 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=47.0
Q ss_pred chhHHH---HHHHhhhhhHHhhhcCCCeEEeecc------------ch-------------hhhHHHHHHHHhhc-Cccc
Q 024544 160 AVSLET---LKEFHRRRVLILANSGADLIAFETI------------PN-------------KLEAKAYAELLEEE-GITI 210 (266)
Q Consensus 160 ~~~~~e---~~~~~~~qi~~l~~~gvD~i~~ET~------------~~-------------~~E~~a~~~a~~~~-~~~~ 210 (266)
.++.+| +.+.|..-++...++|.|.|=+-.- .+ ...+..+++++++. +.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 455555 5556766677778899999966421 11 22345667777764 4467
Q ss_pred ccceeeecCCCceeecCchHHHhhhHHh
Q 024544 211 PAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 211 Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
|+++-++..+. ...|.++++++..+.
T Consensus 223 ~v~vri~~~~~--~~~g~~~~e~~~ia~ 248 (336)
T cd02932 223 PLFVRISATDW--VEGGWDLEDSVELAK 248 (336)
T ss_pred eEEEEEccccc--CCCCCCHHHHHHHHH
Confidence 88887765332 234667777766554
No 226
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=40.86 E-value=3.4e+02 Score=26.20 Aligned_cols=132 Identities=21% Similarity=0.194 Sum_probs=76.5
Q ss_pred hhHHHHhhhhhhccccEEEechhhhhhhhh--hccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcccc
Q 024544 55 HLVRKVHLDYLDAGANIIITASYQATIQGF--EAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (266)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l--~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (266)
..++.-....+.+|.+.|. +|-++.... ...+.+.+++.+....+++.|++- +
T Consensus 76 ~~~~~~~ea~~~a~~~~i~--if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~----------------------g- 130 (409)
T COG0119 76 RAIKRDIEALLEAGVDRIH--IFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH----------------------G- 130 (409)
T ss_pred HhHHhhHHHHHhCCCCEEE--EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----------------------C-
Confidence 3455556677888888633 333332221 222556665656666666665542 1
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcc
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~ 209 (266)
+.|.+| ..+ .. ..+++.+.+.+ +.+.+.|++.|-+= |+ ..+.+...+++.+++.
T Consensus 131 -~~~~~~-------~Ed-------~~-rt~~~~l~~~~----~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~--- 187 (409)
T COG0119 131 -LEVRFS-------AED-------AT-RTDPEFLAEVV----KAAIEAGADRINLPDTVGVATPNEVADIIEALKAN--- 187 (409)
T ss_pred -CeEEEE-------eec-------cc-cCCHHHHHHHH----HHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHh---
Confidence 333331 111 11 13455555544 55557788888654 43 4677888899988873
Q ss_pred cc--cceeeecCCCceeecCchHHHhhhHHh
Q 024544 210 IP--AWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 210 ~P--v~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+| +.+++-|.+| .|.-+...+..+.
T Consensus 188 v~~~~~l~~H~HnD----~G~AvANslaAv~ 214 (409)
T COG0119 188 VPNKVILSVHCHND----LGMAVANSLAAVE 214 (409)
T ss_pred CCCCCeEEEEecCC----cchHHHHHHHHHH
Confidence 56 8899999887 4666666655554
No 227
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=40.35 E-value=62 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=28.9
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCccccccee
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFS 215 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iS 215 (266)
+++.+.++|+|++.+=..+...++..+++.+++.+ +++.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~ 109 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVD 109 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEE
Confidence 34667789999998766555556677788888755 566654
No 228
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=40.33 E-value=2.9e+02 Score=28.94 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=32.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS 239 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~ 239 (266)
.+..+.+..||.|.+|+-.+-.| .++.+++.+.+..+..-+.--.+.++ ++++++...+..
T Consensus 652 i~~~i~~l~vD~~~lE~~rs~~e---~L~~~~~~~~~~~iglGVvd~~s~~v---es~eei~~rI~~ 712 (758)
T PRK05222 652 IIDAIAALDADVISIETSRSDME---LLDAFEDFGYPNEIGPGVYDIHSPRV---PSVEEIEELLRK 712 (758)
T ss_pred HHHHHHhCCCCEEEEEecCCCch---hHHHhhccCCCCeEEEEEEcCCCCCC---CCHHHHHHHHHH
Confidence 56667778999999997755433 44455543322334333322223333 445555555543
No 229
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.92 E-value=76 Score=28.04 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=22.5
Q ss_pred hHHhhhcCCCeEEeeccc--hhhhHHHHHHHHhhcC
Q 024544 174 VLILANSGADLIAFETIP--NKLEAKAYAELLEEEG 207 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~--~~~E~~a~~~a~~~~~ 207 (266)
++.+.++|+|.+++=-.| ..+|....++.+++.+
T Consensus 94 i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G 129 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG 129 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC
Confidence 556667899988874322 1356677777777765
No 230
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.86 E-value=50 Score=33.54 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=50.5
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhh--hhhhhhccccc
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINC 250 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~--~~~~~avGiNC 250 (266)
++...+.|+|+| +|-.+.++..++..++++++.| +-+..++++..+. -.+++..+..+++ ..+++.|.|-=
T Consensus 102 v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G--~~~~~~i~yt~sp----~~t~e~~~~~ak~l~~~Gad~I~IkD 175 (596)
T PRK14042 102 VKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHK--KHAQGAICYTTSP----VHTLDNFLELGKKLAEMGCDSIAIKD 175 (596)
T ss_pred HHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcC--CEEEEEEEecCCC----CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 455677999998 6678888888889999999977 4444443332221 2233333333322 13455444421
Q ss_pred ----CCcchhhhhheeeee
Q 024544 251 ----TSPRFIHGLILSVRK 265 (266)
Q Consensus 251 ----~~p~~~~~~l~~l~~ 265 (266)
..|..+..+++.+++
T Consensus 176 taG~l~P~~v~~lv~alk~ 194 (596)
T PRK14042 176 MAGLLTPTVTVELYAGLKQ 194 (596)
T ss_pred cccCCCHHHHHHHHHHHHh
Confidence 247777777666543
No 231
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=39.72 E-value=80 Score=30.37 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=25.2
Q ss_pred cccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHH
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 94 (266)
.++.|+-...+++ |-+.|||+++| |+ +..+++.|++.+.+
T Consensus 73 DLk~~eGr~~l~~--Lv~~ADVvien-~r--pg~~~rlGl~~e~L 112 (416)
T PRK05398 73 DTKTPEGKEVLEK--LIREADVLVEN-FG--PGALDRMGFTWERI 112 (416)
T ss_pred eCCCHHHHHHHHH--HHhcCCEEEEC-CC--cchHHHcCCCHHHH
Confidence 4456664443333 23569999998 43 55677889986543
No 232
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=39.68 E-value=3.6e+02 Score=26.16 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=79.9
Q ss_pred CchhHHHHhhhhhh---ccccEEEechhh-----hhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 024544 53 SPHLVRKVHLDYLD---AGANIIITASYQ-----ATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFT 124 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~---AGAdiI~TnTy~-----a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~ 124 (266)
+++.|+ +|.+ .|.|-+-.|||+ -...++....-++ ..+-+.|+++.+++++...+-
T Consensus 99 D~~elk----~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD---~~VR~~AIeh~~~~i~Ig~el--------- 162 (412)
T TIGR02629 99 DPKELK----ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTD---AATRRQAVEHNLECIEIGKAL--------- 162 (412)
T ss_pred CHHHHH----HHHHHcCCccceeccccccCcccccccccccccCCCC---HHHHHHHHHHHHHHHHHHHHh---------
Confidence 666666 4442 367778888893 3333332222232 346678888888887653221
Q ss_pred CCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCe-E---E----eeccchhhhH
Q 024544 125 GSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADL-I---A----FETIPNKLEA 196 (266)
Q Consensus 125 ~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~-i---~----~ET~~~~~E~ 196 (266)
+.+ ++ .-+++||+.|.++-.-.-..+.+.+..++....+-+ +..+ | . +|.+. +.|.
T Consensus 163 ------Gs~-----~v---~IW~gDG~~yP~Q~~~~~~~~rl~esL~eI~~~~pd-~~k~~iEyKpfEP~~ys~~-v~d~ 226 (412)
T TIGR02629 163 ------GSK-----AL---TVWIGDGSNFPGQSNFTRAFERYLDAMKAVYAGLPD-DWKLFTEHKMYEPAFYSTV-VQDW 226 (412)
T ss_pred ------CCC-----ee---EEECCCCCCCcCccchHHHHHHHHHHHHHHHhhCCc-cceEEEecccCCCceeeee-chHH
Confidence 111 11 346778887777631101334444444444443332 2212 1 1 22111 1232
Q ss_pred HHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 197 KAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 197 ~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
=...-++++.+ -+..+.+ +.|+..-+++++..+..+.......++=+|=
T Consensus 227 g~~yl~~~~lg--~~~~vlL---D~GH~~P~~nie~ivs~ll~~gkL~GfHfNd 275 (412)
T TIGR02629 227 GTNYLIAQELG--PKAFCLV---DLGHHAPNVNIEMIVARLIQFKKLGGFHFND 275 (412)
T ss_pred HHHHHHHHHhC--CCcEEEe---ecCCCCcccCHHHHHHHHHhhCCcceeecCC
Confidence 23333345544 2333333 5566678999998887654333344555565
No 233
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=39.27 E-value=54 Score=29.27 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=32.7
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeE-----EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCc
Q 024544 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI 222 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~ 222 (266)
+.+|+.... +.+...++|++ +++.+++...+...+..+++.-.++|+++++....+|
T Consensus 26 ~~~e~~~~~----~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eG 87 (253)
T PRK02412 26 TLEEVLAEA----LAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEG 87 (253)
T ss_pred CHHHHHHHH----HHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhC
Confidence 455554432 23333455555 3455666666666666666542358999999776543
No 234
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=39.25 E-value=43 Score=30.39 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=32.5
Q ss_pred HHhhhhhHHhhhcCCCeEEee--ccchhhhHHHHHHHHhhcCcccccceeeec
Q 024544 168 EFHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
..|.+++...+++|..+| +| --.+++|++.++++.++.+ +++.+.|..
T Consensus 78 ~~H~e~~~~AL~aGkhVl-~EKPla~t~~ea~~l~~~a~~~~--~~l~v~~~~ 127 (342)
T COG0673 78 ALHAELALAALEAGKHVL-CEKPLALTLEEAEELVELARKAG--VKLMVGFNR 127 (342)
T ss_pred hhhHHHHHHHHhcCCEEE-EcCCCCCCHHHHHHHHHHHHHcC--Cceeeehhh
Confidence 357777777777887554 37 4556778888888877754 566665543
No 235
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=39.22 E-value=62 Score=28.78 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=47.1
Q ss_pred CeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh---hhhhhhhcccccCCc
Q 024544 183 DLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD---SCEQVVAVGINCTSP 253 (266)
Q Consensus 183 D~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~---~~~~~~avGiNC~~p 253 (266)
.+-+++|+-++.-++++=+.....+..+.|.+.+.+..+. -.+|.+++++...+. ...++...|+.|..|
T Consensus 93 ~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~-sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp 165 (228)
T COG0325 93 NFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEE-SKSGVPPEELDELAQEVQELPNLELRGLMTIPP 165 (228)
T ss_pred hcceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCcc-ccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCC
Confidence 4557788888877777755344433347788888774332 247888887766553 346778899999765
No 236
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=39.07 E-value=3.1e+02 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=14.2
Q ss_pred hHHHHhhhhh-------hccccEEEech
Q 024544 56 LVRKVHLDYL-------DAGANIIITAS 76 (266)
Q Consensus 56 ~V~~iH~~Yl-------~AGAdiI~TnT 76 (266)
-|+++-.+|. +||.|.|.-|-
T Consensus 148 eI~~ii~~~~~aA~~a~~aGfDgVei~~ 175 (336)
T cd02932 148 EIAEVVDAFVAAARRAVEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4555555554 46999998885
No 237
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=39.04 E-value=62 Score=28.11 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=42.8
Q ss_pred EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH---hhhhhhhhcccccC
Q 024544 186 AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCT 251 (266)
Q Consensus 186 ~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~---~~~~~~~avGiNC~ 251 (266)
+..|+.+.+.++.+-++.++.+..++||+-+.++. |.-+.|-+..++...+ ....++...|+-|-
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH 162 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAI 162 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 55789999999888887766554467777886643 3335687766554443 33345667788774
No 238
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=38.89 E-value=56 Score=30.41 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=40.2
Q ss_pred hhhhHHhhhcCCCeEE---eeccc------------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 171 RRRVLILANSGADLIA---FETIP------------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~---~ET~~------------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
.++++.|.++|+|.+. .|+++ +.++...+++.+++.| +++..++-+- .|++.++.+.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~G--i~v~s~~i~G------~~Et~ed~~~ 212 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLG--IPTTATIMYG------HVETPEHWVD 212 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcC--CcccceEEEe------cCCCHHHHHH
Confidence 4567888899999875 37664 4456677778888876 6666555442 4567777666
Q ss_pred HH
Q 024544 236 IA 237 (266)
Q Consensus 236 ~~ 237 (266)
.+
T Consensus 213 ~l 214 (343)
T TIGR03551 213 HL 214 (343)
T ss_pred HH
Confidence 54
No 239
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.83 E-value=85 Score=27.52 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
++.+.++|+|++.+=.-.....++.+++.+++.+ +.+.+++.
T Consensus 81 i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~ 122 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIK 122 (228)
T ss_pred HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEEC
Confidence 4667789999886533323323677888888876 55566553
No 240
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.81 E-value=2.8e+02 Score=24.52 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=30.7
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccc--hhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
..+.+.+..++.++...+.||. |.+|+++ -+.....+++.++..+ -| .+.+.++
T Consensus 127 ~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t~~~~~~li~~v~--~~-~v~~~~D 182 (279)
T TIGR00542 127 TRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSSISKWLKWDHYLN--SP-WFTLYPD 182 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcCHHHHHHHHHHcC--CC-ceEEEeC
Confidence 4566777777777777788995 4559752 2233334445555433 23 3444443
No 241
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=38.80 E-value=88 Score=28.48 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=20.0
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQATI 81 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~ 81 (266)
.+|+.|...-|-=.+.|||||.|+ |-.++
T Consensus 163 ~d~~~v~~aaRlaaelGADIiK~~-ytg~~ 191 (265)
T COG1830 163 RDADLVGYAARLAAELGADIIKTK-YTGDP 191 (265)
T ss_pred ccHHHHHHHHHHHHHhcCCeEeec-CCCCh
Confidence 456677766666677899999987 43333
No 242
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=38.56 E-value=2e+02 Score=25.27 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=64.0
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (266)
..++...++-+.+++.|.+.+-|.....+ |- .++++.++++-.+ ...
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-------g~----sE~~lg~~l~~~~----------------------~~r 60 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGN-------GR----SERILGRALRKSR----------------------VPR 60 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGG-------GT----HHHHHHHHHHHTS----------------------STG
T ss_pred CCHHHHHHHHHHHHHcCCCeecccccccc-------cc----ccccccccccccc----------------------ccc
Confidence 45677788888889999999999987422 11 2334444333200 134
Q ss_pred cceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhh----HHHHHHHHhhcC
Q 024544 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLE----AKAYAELLEEEG 207 (266)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E----~~a~~~a~~~~~ 207 (266)
.+++|+.=+.+.+. .....+.+.+.+...+.++.|--.-+|++++--.....+ +-..++.+++.|
T Consensus 61 ~~~~i~tK~~~~~~-----------~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G 129 (283)
T PF00248_consen 61 DDIFISTKVYGDGK-----------PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEG 129 (283)
T ss_dssp GGSEEEEEEESSSS-----------TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccc-----------ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccc
Confidence 56778777711111 111246677777777777777656789998865544433 444444454443
No 243
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=38.49 E-value=1.5e+02 Score=27.28 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHhhhhhHHhhhcC-CCeEEe--------eccchhhhHHHHHHHHhh-cCcccccceeeecCC
Q 024544 167 KEFHRRRVLILANSG-ADLIAF--------ETIPNKLEAKAYAELLEE-EGITIPAWFSFNSKD 220 (266)
Q Consensus 167 ~~~~~~qi~~l~~~g-vD~i~~--------ET~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~ 220 (266)
..+-.+.++.|..+| +|.|++ |..++. |.. +++.+|+ .|+++|+.+++...-
T Consensus 81 e~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~-EG~-Ll~rvR~~vGp~vpI~~tlDlHa 142 (292)
T PF07364_consen 81 ERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDG-EGD-LLRRVRAIVGPDVPIAATLDLHA 142 (292)
T ss_dssp HHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSH-HHH-HHHHHHHHHTTTSEEEEEE-TT-
T ss_pred HHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCc-hHH-HHHHHHHHhCCCCeEEEEeCCCC
Confidence 333344455565554 899854 666666 322 4555666 577899999997654
No 244
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=38.45 E-value=89 Score=29.03 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=53.4
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEee-cc---c-hhhhHHHHHHHHhhc--CcccccceeeecCCCceeecCchHHHhh
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFE-TI---P-NKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~---~-~~~E~~a~~~a~~~~--~~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
-.+++...|.+.++.|.+.||..|=++ =+ . +..+..++.++.+.. ..+.+++++..+.+ +.+..
T Consensus 175 ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~~~~~~ill~TYFg~---------~~~~l 245 (310)
T PF08267_consen 175 LLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAAAPRPKILLATYFGD---------LGDNL 245 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCCTTTSEEEEE--SS-----------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhcCCCCcEEEECCCCc---------hhhHH
Confidence 367788899999999999999988443 11 1 222333444444433 34578888887743 22444
Q ss_pred hHHhhhhhhhhcccccCC-cchhhhhh
Q 024544 235 SIADSCEQVVAVGINCTS-PRFIHGLI 260 (266)
Q Consensus 235 ~~~~~~~~~~avGiNC~~-p~~~~~~l 260 (266)
..+.+ .+++++|+.++. ++.+..+.
T Consensus 246 ~~l~~-lpv~~l~lDlv~~~~~l~~~~ 271 (310)
T PF08267_consen 246 ELLLD-LPVDGLHLDLVRGPENLEALL 271 (310)
T ss_dssp HHHTT-SSESEEEEETTTHCHHHHHHH
T ss_pred HHHhc-CCCcEEEeeccCCcccHHHHH
Confidence 55555 578899999984 65554443
No 245
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.39 E-value=1.3e+02 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.016 Sum_probs=34.7
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-c-----cchhhhHHHHHHHHhh-cCcccccceeee
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFN 217 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~ 217 (266)
++.+. ++.+++.+.+.|||.|++- | .-+.+|=+.+++.+.+ ...++||++...
T Consensus 18 iD~~~----l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 18 FDEDA----YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 66655 4446788888999998543 3 2345666677765443 333689998774
No 246
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.15 E-value=59 Score=28.77 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.2
Q ss_pred hhhhHHhhhcCCCeEEee
Q 024544 171 RRRVLILANSGADLIAFE 188 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~E 188 (266)
.+.++.+.++|||+|=+.
T Consensus 17 ~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 17 LEILKALVEAGADIIELG 34 (242)
T ss_pred HHHHHHHHHCCCCEEEEC
Confidence 345677888999999877
No 247
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=37.63 E-value=90 Score=26.90 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=26.8
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCC
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD 220 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~ 220 (266)
++.+.+.|+|.+++-|..- .+...+.+++++.+ ..++++|+.+..
T Consensus 87 ~~~~~~~Ga~~vvlgs~~l-~d~~~~~~~~~~~g-~~~i~~sid~~~ 131 (230)
T TIGR00007 87 VEKLLDLGVDRVIIGTAAV-ENPDLVKELLKEYG-PERIVVSLDARG 131 (230)
T ss_pred HHHHHHcCCCEEEEChHHh-hCHHHHHHHHHHhC-CCcEEEEEEEEC
Confidence 3445558999888766542 23344555566654 245677777654
No 248
>PLN02417 dihydrodipicolinate synthase
Probab=37.62 E-value=3.1e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=26.9
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+..++.-+-+++.|++-|..+--..-... ++.+|-.++++.+++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~-----ls~~Er~~~~~~~~~ 65 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQL-----MSWDEHIMLIGHTVN 65 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhh-----CCHHHHHHHHHHHHH
Confidence 4556777777778999997766544333233 344445555554444
No 249
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=37.58 E-value=1.2e+02 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=28.2
Q ss_pred hhhhHHhhhcCCCeEEeecc-chhhhHHHHHHHHhhcCcccccce
Q 024544 171 RRRVLILANSGADLIAFETI-PNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~-~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
.++++.|+++|+|+|.+-+- .+-..+...++.+++..+++|+++
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE
Confidence 45788999999999998652 112223445666666433567665
No 250
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=37.52 E-value=57 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=24.6
Q ss_pred CchhHHHHhhhhhhcccc----------EEEechhhhhhhhh
Q 024544 53 SPHLVRKVHLDYLDAGAN----------IIITASYQATIQGF 84 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAd----------iI~TnTy~a~~~~l 84 (266)
.|+.|++.|+.+++-+.+ -+.|.|+..++..+
T Consensus 93 ~~~avr~~h~q~~~lA~~al~~~p~~~R~~s~~T~~vs~~~~ 134 (171)
T PF14394_consen 93 PSEAVRSYHKQMLELAQEALDRVPPEERDFSGLTMSVSREDY 134 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCccccceeeeEEEeCHHHH
Confidence 467999999999988776 45577777666655
No 251
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.49 E-value=73 Score=28.61 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=30.8
Q ss_pred hHHhhhcCCCeEEee---ccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 174 VLILANSGADLIAFE---TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 174 i~~l~~~gvD~i~~E---T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
++.+..+|.|++++. +..+..++..++++++..+ .+.+|-+.
T Consensus 33 ~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g--~~~lVRvp 77 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSA--SAPVVRVP 77 (256)
T ss_pred HHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcC--CCcEEECC
Confidence 466777999999998 4556777777777777755 66666664
No 252
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=37.49 E-value=36 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=25.5
Q ss_pred CCCCCCccccccccc-cCchhHHHHhhhhhhccccEEEechhhhh
Q 024544 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITASYQAT 80 (266)
Q Consensus 37 g~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~ 80 (266)
|+.+..|.+.+...+ ++.+.++.+ .++|+..|+|-|....
T Consensus 5 G~~~~nPv~~aag~~~~~~~~~~~~----~~~g~g~vv~kti~~~ 45 (289)
T cd02810 5 GLKLKNPFGVAAGPLLKTGELIARA----AAAGFGAVVYKTVTLH 45 (289)
T ss_pred CEECCCCCEeCCCCCCCCHHHHHHH----HHcCCCeEEeCcccCC
Confidence 566666766544333 566666554 4578888888887644
No 253
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=37.42 E-value=50 Score=30.44 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=39.5
Q ss_pred CCCeEEeeccc-----hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC
Q 024544 181 GADLIAFETIP-----NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (266)
Q Consensus 181 gvD~i~~ET~~-----~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~ 251 (266)
++|.|.+.+|. +.++++.+.++++..+. .++-+-+ ..|-+++.+..+.. .+++.||+-..
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~-~~~~iea--------SGgI~~~~i~~~a~--~gvD~isvGs~ 275 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIRGY-KHVKIFV--------SGGLDEEDIKELED--VGVDAFGVGTA 275 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCC-CCeEEEE--------eCCCCHHHHHHHHH--cCCCEEECCcc
Confidence 69999999996 66677888888877531 1222222 24666666655544 46888888664
No 254
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.27 E-value=62 Score=31.66 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=45.8
Q ss_pred hHHhhhcCCCeEEe-eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccc---
Q 024544 174 VLILANSGADLIAF-ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN--- 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~-ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiN--- 249 (266)
++...++|+|.|-+ -.+++...++.+++.+++.+ +.+-+++++..+.+ -+-.-+.+.+..+.+ .+++.|.+-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~-~Gad~I~i~Dt~ 177 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAG--GHAQVAISYTTSPV-HTIDYFVKLAKEMQE-MGADSICIKDMA 177 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CeEEEEEEeecCCC-CCHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 45556789998754 45566677777888888876 44333333222211 011112233333332 345544442
Q ss_pred -cCCcchhhhhheeee
Q 024544 250 -CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 -C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 178 G~l~P~~v~~lv~alk 193 (448)
T PRK12331 178 GILTPYVAYELVKRIK 193 (448)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 234777777776654
No 255
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=37.23 E-value=84 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=39.5
Q ss_pred HHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC-c-----e-----eecCchHHHhhhHH---hhh
Q 024544 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-I-----N-----VVSGDSILECASIA---DSC 240 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~-~-----~-----l~~G~~~~~a~~~~---~~~ 240 (266)
+..++.|+..+.++ +..|++.+.++.++.+...+|++-+....+ . . .+-|.+++++...+ .+.
T Consensus 85 ~~a~~~gi~~i~vd---s~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~~~ 161 (377)
T cd06843 85 AQALAQGVERIHVE---SELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRDL 161 (377)
T ss_pred HHHHHcCCCEEEeC---CHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHHhC
Confidence 33445678777555 667777777766665544677777765321 0 0 13477766554443 322
Q ss_pred hhhhhccc
Q 024544 241 EQVVAVGI 248 (266)
Q Consensus 241 ~~~~avGi 248 (266)
.++...|+
T Consensus 162 ~~l~~~Gl 169 (377)
T cd06843 162 PNIRLRGF 169 (377)
T ss_pred CCccEEEE
Confidence 34555666
No 256
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=37.21 E-value=40 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=28.5
Q ss_pred CCCCchhHHHHHHHhhhhhHHhh-hcCCCeEEee--ccc
Q 024544 156 DYGDAVSLETLKEFHRRRVLILA-NSGADLIAFE--TIP 191 (266)
Q Consensus 156 ~y~~~~~~~e~~~~~~~qi~~l~-~~gvD~i~~E--T~~ 191 (266)
+||. -+.+++.+...+.++.|. +.|||++++= |..
T Consensus 36 PYG~-ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~ 73 (251)
T TIGR00067 36 PYGE-KSPEFILEYVLELLTFLKERHNIKLLVVACNTAS 73 (251)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 3553 588999999999999998 9999999765 554
No 257
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.14 E-value=2.8e+02 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.1
Q ss_pred ccccCchhHHHHhhhhhhccccEEEechhh
Q 024544 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (266)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (266)
+.+++++.+.++=+.--++|++++....|-
T Consensus 35 Csie~~~~~~~~A~~lk~~g~~~~r~~~~k 64 (266)
T PRK13398 35 CAVESEEQMVKVAEKLKELGVHMLRGGAFK 64 (266)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEEeeec
Confidence 357889999988888889999999999994
No 258
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=36.72 E-value=70 Score=31.09 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHHhhhhhHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCC
Q 024544 164 ETLKEFHRRRVLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKD 220 (266)
Q Consensus 164 ~e~~~~~~~qi~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~ 220 (266)
+++.+-| ++...+.|.|+| +|-.+.+...++.+++++++.|...-..+|.+..+
T Consensus 97 DDvVe~F---v~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 97 DDVVEKF---VEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred hHHHHHH---HHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 3455544 456678999998 78899999999999999999875555555555443
No 259
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=36.65 E-value=85 Score=28.80 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=39.4
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
|++..+++|+|+|++--|+ ++|++.+++.++. ..++.+..+ -|-+++.+-.+.. .+++.|-+
T Consensus 200 ~~~eAl~agaDiImLDNm~-~e~~~~av~~l~~---~~~~~lEaS--------GgIt~~ni~~yA~--tGVD~IS~ 261 (280)
T COG0157 200 EAEEALEAGADIIMLDNMS-PEELKEAVKLLGL---AGRALLEAS--------GGITLENIREYAE--TGVDVISV 261 (280)
T ss_pred HHHHHHHcCCCEEEecCCC-HHHHHHHHHHhcc---CCceEEEEe--------CCCCHHHHHHHhh--cCCCEEEe
Confidence 4455567999999999997 7899999887622 234554442 3556655544433 45665443
No 260
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.50 E-value=3.1e+02 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=21.3
Q ss_pred ccccccCch--hHHHHhhhhhhccccEEEech
Q 024544 47 AKCLVSSPH--LVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 47 ~~~ll~~Pe--~V~~iH~~Yl~AGAdiI~TnT 76 (266)
.+...-+|+ .-.++-+...++|||+|+---
T Consensus 14 ~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi 45 (256)
T TIGR00262 14 PFVTAGDPTLETSLEIIKTLIEAGADALELGV 45 (256)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 344455665 466777889999999998643
No 261
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.24 E-value=1.3e+02 Score=27.23 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=40.6
Q ss_pred hhHHHHHHHhhhhhHHhhh-cCCCeEEee-c-----cchhhhHHHHHHHHhh-cCcccccceeeecCCCceeecCchHHH
Q 024544 161 VSLETLKEFHRRRVLILAN-SGADLIAFE-T-----IPNKLEAKAYAELLEE-EGITIPAWFSFNSKDGINVVSGDSILE 232 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~-~gvD~i~~E-T-----~~~~~E~~a~~~a~~~-~~~~~Pv~iSf~~~~~~~l~~G~~~~~ 232 (266)
++.+. ++.+++.+++ .|||.|++- | .-+.+|=+.+++.+.+ ...++|+++... ..+..+
T Consensus 21 iD~~~----~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ 87 (293)
T PRK04147 21 IDEQG----LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAE 87 (293)
T ss_pred cCHHH----HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHH
Confidence 56554 4447788888 999998653 2 2235666677775544 333578887662 234566
Q ss_pred hhhHHhh
Q 024544 233 CASIADS 239 (266)
Q Consensus 233 a~~~~~~ 239 (266)
+++.++.
T Consensus 88 ai~~a~~ 94 (293)
T PRK04147 88 AQELAKY 94 (293)
T ss_pred HHHHHHH
Confidence 6665543
No 262
>PRK04302 triosephosphate isomerase; Provisional
Probab=36.15 E-value=83 Score=27.29 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=28.8
Q ss_pred hhHHhhhcCCCeEEeecc-----------chhhhHHHHHHHHhhcCcccccceeeec
Q 024544 173 RVLILANSGADLIAFETI-----------PNKLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~-----------~~~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
+++.+.+.+.|+|.+|.. .....+..+++.+++...++|++.-+.+
T Consensus 126 ~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI 182 (223)
T PRK04302 126 TSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGI 182 (223)
T ss_pred HHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 344455668899988752 2345566777777764335788876654
No 263
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=36.10 E-value=88 Score=27.89 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=25.4
Q ss_pred hHHhhhcCCCeEEeeccc---hhhhHHHHHHHHhhcCcccccceee
Q 024544 174 VLILANSGADLIAFETIP---NKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~---~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
++.+...|.|++++..=- +..++..++++++..+ ..++|-+
T Consensus 26 ~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g--~~~~VRv 69 (249)
T TIGR02311 26 AEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYP--SSPVVRP 69 (249)
T ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcC--CCcEEEC
Confidence 455677899999998544 4445555555554433 4556555
No 264
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.97 E-value=3e+02 Score=25.66 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=57.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEeccc-ccceecCCC-ccccCCCCchhHH
Q 024544 87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGS-YGAYLADGS-EYSGDYGDAVSLE 164 (266)
Q Consensus 87 ~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP-~g~~l~~gs-eY~g~y~~~~~~~ 164 (266)
..++.++++++.+.-++-|+.|.+. .=+.+-|-|.-|- ...+|++.. --+..|+. +.+
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~a------------------GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--sle 184 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREA------------------GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG--SFE 184 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc------------------CCCEEEEecccchHHHHhcCCccCCCcCccCC--CHH
Confidence 3577788888888888888777532 1124555554332 112222210 01223442 455
Q ss_pred HHHHHhhhhhHHhhh-cCCCeEE------eecc---chhhhHHHHHHHHhhcC
Q 024544 165 TLKEFHRRRVLILAN-SGADLIA------FETI---PNKLEAKAYAELLEEEG 207 (266)
Q Consensus 165 e~~~~~~~qi~~l~~-~gvD~i~------~ET~---~~~~E~~a~~~a~~~~~ 207 (266)
.-.++-.+.++++.+ -|.|+.+ .|.. .+.+|+..+++.+.+.+
T Consensus 185 nR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 185 NRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred HHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 556666677777755 3667654 3443 46778888888787755
No 265
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=35.75 E-value=1.8e+02 Score=26.29 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=54.5
Q ss_pred hhHHHHhhhhhhccccEEEechhhhhhh-hhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcccc
Q 024544 55 HLVRKVHLDYLDAGANIIITASYQATIQ-GFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSR 132 (266)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~a~~~-~l~~~-g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (266)
+-+.++|..-.+-|..| -+=++.+++. -|... ....++..+|.++|++||++. .-+
T Consensus 54 ~er~~l~~ai~etgv~i-pSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dL---------------------GIR 111 (287)
T COG3623 54 EERLALVNAIQETGVRI-PSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDL---------------------GIR 111 (287)
T ss_pred HHHHHHHHHHHHhCCCc-cchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHh---------------------Cce
Confidence 45667788777777653 2223333321 12111 112256678999999999986 345
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHH---hhhhhHHhhhcCCCeEEeeccchh
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF---HRRRVLILANSGADLIAFETIPNK 193 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~---~~~qi~~l~~~gvD~i~~ET~~~~ 193 (266)
.+..|| |-.|..+ -+.+..+.| -+.-++....+.| ++.+|.|-+.
T Consensus 112 tIQLAG----YDVYYE~-----------~d~eT~~rFi~g~~~a~~lA~~aqV-~lAvEiMDtp 159 (287)
T COG3623 112 TIQLAG----YDVYYEE-----------ADEETRQRFIEGLKWAVELAARAQV-MLAVEIMDTP 159 (287)
T ss_pred eEeecc----ceeeecc-----------CCHHHHHHHHHHHHHHHHHHHhhcc-EEEeeecccH
Confidence 677777 6555432 233333332 2222333334454 7788988654
No 266
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=35.71 E-value=1.2e+02 Score=27.60 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=54.6
Q ss_pred ceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCccccc
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPA 212 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv 212 (266)
+.||.+.+ |+++ |. .+.++..+. -.+.+.++|+|.+-+|--. |....++++-+.+ +||
T Consensus 77 ~~~vv~Dm-Pf~s-----------y~--~s~e~av~n---A~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~G--IPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGS-----------YQ--ASPEQAVRN---AGRLMKEAGADAVKLEGGA---EIAETIKALVDAG--IPV 134 (261)
T ss_dssp SSEEEEE---TTS-----------ST--SSHHHHHHH---HHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHTT----E
T ss_pred CceEEecC-Cccc-----------cc--CCHHHHHHH---HHHHHHhcCCCEEEeccch---hHHHHHHHHHHCC--CcE
Confidence 56777777 4665 42 244444332 2345567999999999655 4455666666655 899
Q ss_pred ceeeecCCC------ceeecCchHHHhhhHHhh-----hhhhhhcccccCCcc
Q 024544 213 WFSFNSKDG------INVVSGDSILECASIADS-----CEQVVAVGINCTSPR 254 (266)
Q Consensus 213 ~iSf~~~~~------~~l~~G~~~~~a~~~~~~-----~~~~~avGiNC~~p~ 254 (266)
+--+-+.+. |.=.-|.+.+++...++. ..++.++-+-|+..+
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~ 187 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAE 187 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHH
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHHH
Confidence 866644332 222346666666555432 256777777777643
No 267
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=35.39 E-value=83 Score=28.12 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=30.8
Q ss_pred hHHhhhcCCCeEEeec---cchhhhHHHHHHHHhhcCcccccceeeec
Q 024544 174 VLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~ 218 (266)
++.+..+|.|++++.+ .-+..++..++++++..+ .+.+|-+..
T Consensus 26 ~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g--~~~~VRvp~ 71 (249)
T TIGR03239 26 TEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSA--SAPVVRPPW 71 (249)
T ss_pred HHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcC--CCcEEECCC
Confidence 4667778999999984 456677777777777654 666766643
No 268
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=35.27 E-value=74 Score=33.67 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHH---HHhhcCcccccceeeecCCCceeecCchHHHhhhHH
Q 024544 167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAE---LLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (266)
Q Consensus 167 ~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~---a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~ 237 (266)
.+||...++-+.++|+-+|.+-.|.-+..=.|+.+ ++|+.- ++|+-+-- .+. +|..+......+
T Consensus 693 L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHT--HDT----sG~~~at~~aA~ 759 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHT--HDT----SGNGVATYLAAV 759 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEec--cCC----CccHHHHHHHHH
Confidence 47899999999999999999998887766555554 555543 68875332 222 566555444333
No 269
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.18 E-value=75 Score=34.89 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=51.4
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHH---HhhhHHhhhhhhhhcccc
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL---ECASIADSCEQVVAVGIN 249 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~---~a~~~~~~~~~~~avGiN 249 (266)
++...+.|+|+| +|-.+.++..++.+++++++.+...-..|+++-+--.-.+.-.+++ +.+..+.. .+++.|.|-
T Consensus 631 ~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~-~Gad~I~ik 709 (1143)
T TIGR01235 631 VKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK-AGAHILGIK 709 (1143)
T ss_pred HHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH-cCCCEEEEC
Confidence 355677999999 7789999999999999999987322234444311000001122343 23333332 355545442
Q ss_pred c----CCcchhhhhheeee
Q 024544 250 C----TSPRFIHGLILSVR 264 (266)
Q Consensus 250 C----~~p~~~~~~l~~l~ 264 (266)
= ..|..+..+++.++
T Consensus 710 Dt~Gll~P~~~~~Lv~~lk 728 (1143)
T TIGR01235 710 DMAGLLKPAAAKLLIKALR 728 (1143)
T ss_pred CCcCCcCHHHHHHHHHHHH
Confidence 2 24777777766654
No 270
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.90 E-value=1e+02 Score=29.97 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEee-ccchhhhHHHH-HHHHhhcCcccccceeeec
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFE-TIPNKLEAKAY-AELLEEEGITIPAWFSFNS 218 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~~~~~E~~a~-~~a~~~~~~~~Pv~iSf~~ 218 (266)
.+...++.+=.+.++.|.+.|||.+++= |.+.....-+. ++.+.+.+ +|++.-.++
T Consensus 316 t~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~G--IPvV~i~~~ 373 (431)
T TIGR01917 316 TAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHICTV 373 (431)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEEeec
Confidence 3556677777888889999999999887 77777766544 46777765 787765544
No 271
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=34.88 E-value=1.3e+02 Score=28.17 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh-hhhhhcccccCCcc
Q 024544 198 AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSPR 254 (266)
Q Consensus 198 a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~-~~~~avGiNC~~p~ 254 (266)
..++-+++...++|+++|+..... ...+.+.++.+..++.. ..++++-+|++.|.
T Consensus 126 ~~~~~l~~~~~~~pvivsI~~~~~--~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~ 181 (344)
T PRK05286 126 ALAERLKKAYRGIPLGINIGKNKD--TPLEDAVDDYLICLEKLYPYADYFTVNISSPN 181 (344)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCC--CCcccCHHHHHHHHHHHHhhCCEEEEEccCCC
Confidence 334334332135899999965321 11233455555554432 24789999998774
No 272
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.66 E-value=3.6e+02 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.1
Q ss_pred CchhHHHHhhhhhhccccEEEechhhh
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQA 79 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a 79 (266)
+.+..+++-+..+++|.|-|..+-...
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttG 49 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTG 49 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 456888888889999999666554433
No 273
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=34.59 E-value=61 Score=29.00 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=33.9
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhh--hHHHHHHHHhhcCccccccee
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKL--EAKAYAELLEEEGITIPAWFS 215 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~--E~~a~~~a~~~~~~~~Pv~iS 215 (266)
...+.++.+.++|.|.|++---.... ++...++++|+. .++|+|+-
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~-~~lPvilf 76 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKER-TDLPVILF 76 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhh-cCCCEEEe
Confidence 34456788899999999998554444 477888889853 36999863
No 274
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=34.45 E-value=78 Score=31.46 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=49.3
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc--
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-- 250 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC-- 250 (266)
++...++|+|+| +|-.++++..++.+++++++.+...-..|+++.... . +-+-+.+.+..+.. .+++.|.|-=
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~-~--t~e~~~~~a~~l~~-~Gad~I~IkDta 178 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI-H--TVEGFVEQAKRLLD-MGADSICIKDMA 178 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCC-C--CHHHHHHHHHHHHH-cCCCEEEeCCCc
Confidence 455667899998 667888999999999999987732223445544321 1 11122233333332 3444443321
Q ss_pred --CCcchhhhhheeee
Q 024544 251 --TSPRFIHGLILSVR 264 (266)
Q Consensus 251 --~~p~~~~~~l~~l~ 264 (266)
..|..+..+++.++
T Consensus 179 Gll~P~~~~~LV~~Lk 194 (499)
T PRK12330 179 ALLKPQPAYDIVKGIK 194 (499)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 23666666666554
No 275
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=34.30 E-value=93 Score=29.26 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=39.3
Q ss_pred ceEEEEecccccceecCCCccccCCC-CchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHH
Q 024544 133 PVLVAASVGSYGAYLADGSEYSGDYG-DAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203 (266)
Q Consensus 133 ~~~VaGsiGP~g~~l~~gseY~g~y~-~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~ 203 (266)
.+-|.|=||=...... +-|-|. ..-+.+++.+.. +++++|.++|++.|++|-+|+. -++.|.+.+
T Consensus 151 GIPV~gHiGLtPQs~~----~lGGykvqGr~~~~a~~li-~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l 216 (332)
T PLN02424 151 GIAVMGHVGLTPQAIS----VLGGFRPQGRTAESAVKVV-ETALALQEAGCFAVVLECVPAP-VAAAITSAL 216 (332)
T ss_pred CCCEEEeecccceeeh----hhcCccccCCCHHHHHHHH-HHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhC
Confidence 4557777765443222 112221 112445555543 4688999999999999999987 555555543
No 276
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=34.28 E-value=45 Score=29.84 Aligned_cols=33 Identities=12% Similarity=-0.038 Sum_probs=28.7
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
.+...++.|+|.|++--+.+.+|++.+++++|-
T Consensus 76 ~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 76 IIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred HHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 345567899999999999999999999998874
No 277
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.27 E-value=71 Score=30.09 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=16.7
Q ss_pred chhHHHHhhhhhhccccEEEec
Q 024544 54 PHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
++.-.++-+...++|.+.|..-
T Consensus 22 ~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 22 AAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe
Confidence 4455566677889999999984
No 278
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=34.19 E-value=31 Score=30.22 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.0
Q ss_pred CchhHHHHhhhhhhccccEEEechh
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASY 77 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy 77 (266)
.|+.|...-+-..++|||+|.|+|=
T Consensus 144 ~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 144 KPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred cHHHHHHHHHHHHHhCCCEEEecCC
Confidence 5678999999999999999999987
No 279
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=33.95 E-value=38 Score=20.28 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=12.6
Q ss_pred HhhhhhhccccEEEec
Q 024544 60 VHLDYLDAGANIIITA 75 (266)
Q Consensus 60 iH~~Yl~AGAdiI~Tn 75 (266)
.-+..+++|+|-|.||
T Consensus 12 ~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHT-SEEEES
T ss_pred HHHHHHHcCCCEeeCC
Confidence 3477899999999997
No 280
>PLN03231 putative alpha-galactosidase; Provisional
Probab=33.90 E-value=80 Score=29.98 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=41.5
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeec-----cchhhhHHHHHHHHhhcCcccccceeee
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFET-----IPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET-----~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
+..-.++||...++.|++=|||+|=.-- .....+..+.-+|+++++ .|++.|++
T Consensus 157 ~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tG--RpIv~Slc 215 (357)
T PLN03231 157 SSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSG--RPMIYSLS 215 (357)
T ss_pred cchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhC--CCeEEEec
Confidence 4455678888889999999999996542 234567778888999876 78888885
No 281
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=33.85 E-value=1.1e+02 Score=31.92 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEee-----ccchhhhHHHHHHHHhhcC---cccccceeeecCCCceeecCchHHHhh
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~E-----T~~~~~E~~a~~~a~~~~~---~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
.+++...|.+.++.|.++||+.|=+. +=+...+..++.++.+... .+.++.+..+|. ++.+.+
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 56788899999999999999987432 2222224455555554431 134556665553 144556
Q ss_pred hHHhhhhhhhhcccccCC-cchhh
Q 024544 235 SIADSCEQVVAVGINCTS-PRFIH 257 (266)
Q Consensus 235 ~~~~~~~~~~avGiNC~~-p~~~~ 257 (266)
..+.+ .+++++|+-++. +..+.
T Consensus 244 ~~l~~-lpvd~l~lD~v~~~~~L~ 266 (750)
T TIGR01371 244 EALVS-LPVKGIGLDFVHGKGTLE 266 (750)
T ss_pred HHHHc-CCCCEEEEEeccCcccHH
Confidence 66665 478899999884 54443
No 282
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=33.78 E-value=1.1e+02 Score=27.62 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhh
Q 024544 37 GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (266)
Q Consensus 37 g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (266)
|+++..|...+.-+..+-+.+ +.++++|+..|+|-|..
T Consensus 8 Gl~l~nPi~~asG~~~~~~~~----~~~~~~G~Gavv~ksvt 45 (295)
T PF01180_consen 8 GLTLKNPIGLASGLDKNGEEI----KRLFDAGFGAVVTKSVT 45 (295)
T ss_dssp TEEESSSEEE-TTSSTSSHHH----HHHHHHSSSEEEEEEE-
T ss_pred CEEcCCCcEECCcCCCCchhh----hhhhcCCccEEEecccc
Confidence 555666655444444554444 45677888877777654
No 283
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=33.68 E-value=3.3e+02 Score=25.15 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=26.2
Q ss_pred cccCchhHHH-----------HhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHH
Q 024544 50 LVSSPHLVRK-----------VHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEI 104 (266)
Q Consensus 50 ll~~Pe~V~~-----------iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~l 104 (266)
+.++||.+.+ .-+.+++||||+|...-=.++ -++++..+++..-..+-
T Consensus 170 ~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~-------~lsp~~f~ef~~P~~k~ 228 (346)
T PRK00115 170 MYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAG-------ALSPADYREFVLPYMKR 228 (346)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-------cCCHHHHHHHHHHHHHH
Confidence 5678885444 344466689998854311111 25556566555444433
No 284
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.51 E-value=2e+02 Score=23.07 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=27.8
Q ss_pred hHHhhhcCCCeEEeeccc--hhhhHHHHHHHHhhcCc-ccccce
Q 024544 174 VLILANSGADLIAFETIP--NKLEAKAYAELLEEEGI-TIPAWF 214 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~-~~Pv~i 214 (266)
+++..+.++|++.+=.+. +...++.+++.+++.+. +.++++
T Consensus 46 v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 46 ARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred HHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345557899999876544 56677888888888653 344554
No 285
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=33.20 E-value=75 Score=31.31 Aligned_cols=87 Identities=10% Similarity=0.187 Sum_probs=47.4
Q ss_pred hHHhhhcCCCeEE-eeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc--
Q 024544 174 VLILANSGADLIA-FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-- 250 (266)
Q Consensus 174 i~~l~~~gvD~i~-~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC-- 250 (266)
++...+.|+|+|- |--+.+...++.+++++|+.|...=+.++++..+. + +=.-+.+.+..+.. .+++.|.|-=
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~-~--t~~y~~~~a~~l~~-~Gad~I~IkDta 186 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPV-H--TLNYYLSLVKELVE-MGADSICIKDMA 186 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCc-C--cHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 5667789999984 45677777788888888887732223444443221 1 00112233333332 3445444421
Q ss_pred --CCcchhhhhheeee
Q 024544 251 --TSPRFIHGLILSVR 264 (266)
Q Consensus 251 --~~p~~~~~~l~~l~ 264 (266)
..|..+..+++.++
T Consensus 187 G~l~P~~v~~Lv~alk 202 (468)
T PRK12581 187 GILTPKAAKELVSGIK 202 (468)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 23666666666554
No 286
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.72 E-value=3.7e+02 Score=24.21 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=26.4
Q ss_pred CchhHHHHhhhhhh-ccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 53 SPHLVRKVHLDYLD-AGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~-AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
+.+.+++.-+.+++ +|++-|..+-...-.. -++.+|-.++.+.+++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~-----~Ls~eEr~~~~~~~~~ 68 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAF-----LLSTEEKKQVLEIVAE 68 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccc-----cCCHHHHHHHHHHHHH
Confidence 45567777777778 9999766654322222 2344555555554444
No 287
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.71 E-value=71 Score=27.38 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCCeEEeeccchhhhHH--H-HHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 181 GADLIAFETIPNKLEAK--A-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 181 gvD~i~~ET~~~~~E~~--a-~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
|+|+++=|.+..-.=+. . ..........+.|+++++... +-..+.+++..+.+ .+.++|-|||.+|.
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~-aG~d~ieln~g~p~ 92 (231)
T cd02801 23 GADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE-LGADGIDLNMGCPS 92 (231)
T ss_pred CCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCH
Confidence 58998877555321111 1 112222233468999888532 22345556655554 58899999998763
No 288
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.40 E-value=1.8e+02 Score=23.42 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHhhhcCCCeEEeecc--chhhhHHHHHHHHhhcCc-ccccceeee
Q 024544 175 LILANSGADLIAFETI--PNKLEAKAYAELLEEEGI-TIPAWFSFN 217 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~--~~~~E~~a~~~a~~~~~~-~~Pv~iSf~ 217 (266)
++..+.++|++.+=.+ +++..++.+++.+++.+. +.|+++.-.
T Consensus 44 ~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 44 DAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 4445578999987653 455567778888888764 566666543
No 289
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=32.08 E-value=62 Score=28.62 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=25.4
Q ss_pred hhHHhhhcCCCeEEe--eccchhhhHHHHHHHHhhcCcccccceee
Q 024544 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 173 qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
.++.|+++|+|+|.| |.-++ ...+++.+|+.+ +..-++|
T Consensus 76 ~i~~fa~agad~It~H~E~~~~---~~r~i~~Ik~~G--~kaGv~l 116 (220)
T COG0036 76 YIEAFAKAGADIITFHAEATEH---IHRTIQLIKELG--VKAGLVL 116 (220)
T ss_pred HHHHHHHhCCCEEEEEeccCcC---HHHHHHHHHHcC--CeEEEEE
Confidence 467788999999865 64444 455677777765 4444444
No 290
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=31.98 E-value=42 Score=31.36 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHhhhcCCCeEEee---------ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh---hh
Q 024544 175 LILANSGADLIAFE---------TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC---EQ 242 (266)
Q Consensus 175 ~~l~~~gvD~i~~E---------T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~---~~ 242 (266)
+..++.||+.|++- +..+++-+..++++++. .+|||+ ||-.+.|+++-.|+..=.+. ..
T Consensus 238 ~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~---ri~V~l------DGGVR~G~DVlKALALGAk~VfiGR 308 (363)
T KOG0538|consen 238 RKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEG---RIPVFL------DGGVRRGTDVLKALALGAKGVFIGR 308 (363)
T ss_pred HHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcC---ceEEEE------ecCcccchHHHHHHhcccceEEecC
Confidence 33456888888652 22233333344444442 588885 33446898887776532221 35
Q ss_pred hhhcccccCCcchhhhhhe
Q 024544 243 VVAVGINCTSPRFIHGLIL 261 (266)
Q Consensus 243 ~~avGiNC~~p~~~~~~l~ 261 (266)
|..+|+.|-+-..+...|.
T Consensus 309 P~v~gLA~~Ge~GV~~vl~ 327 (363)
T KOG0538|consen 309 PIVWGLAAKGEAGVKKVLD 327 (363)
T ss_pred chheeeccccchhHHHHHH
Confidence 6789999975444444443
No 291
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.86 E-value=1.5e+02 Score=26.17 Aligned_cols=74 Identities=7% Similarity=-0.038 Sum_probs=40.6
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceee------cCchHHHhhhHHhhhhhhhhcc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVV------SGDSILECASIADSCEQVVAVG 247 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~------~G~~~~~a~~~~~~~~~~~avG 247 (266)
++.+.+.|+|-+.+-|.. +++...+-++.++++ +. +++|+...++.-.. ++.++.+.+..+.. .++..+-
T Consensus 91 v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg-~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ii 166 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFP-GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IPLGGII 166 (234)
T ss_pred HHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcC-CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cCCCEEE
Confidence 344446899999887654 223334444555554 33 77888776542222 34456666666554 2334444
Q ss_pred cccC
Q 024544 248 INCT 251 (266)
Q Consensus 248 iNC~ 251 (266)
++..
T Consensus 167 ~tdi 170 (234)
T PRK13587 167 YTDI 170 (234)
T ss_pred Eecc
Confidence 4443
No 292
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=31.41 E-value=1.6e+02 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=29.8
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeE-----EeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 162 SLETLKEFHRRRVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
+.+|+.. +++.+...|+|++ .|+. .+..+...+.+.+++. ++|+++|+.
T Consensus 31 ~~ee~~~----~~~~~~~~~aDivE~RlD~l~~-~~~~~~~~~~~~l~~~--~~p~I~T~R 84 (229)
T PRK01261 31 DIKEMKE----RFKTKVLSDKNLYEIRFDLFHD-HSIESEPEIISALNEM--DIDYIFTYR 84 (229)
T ss_pred CHHHHHH----HHHHhhcCCCCEEEEEeeccCC-CChHHHHHHHHHHhhc--CCCEEEEEc
Confidence 5566554 3344555677765 3343 4455566666667664 589998885
No 293
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=31.40 E-value=78 Score=31.16 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=46.6
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccc-
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGIN- 249 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiN- 249 (266)
++...++|+|.| +|-.++++..++..++++++.+..+-..+++++.+ -.+++..+..++.. .+++.|.|-
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p------~~t~e~~~~~a~~l~~~Gad~I~i~D 174 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP------VHTLEYYLEFARELVDMGVDSICIKD 174 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCC------CCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 455667899977 45577788888888888888763222334444321 11233333332221 344443331
Q ss_pred ---cCCcchhhhhheeee
Q 024544 250 ---CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ---C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 175 t~G~l~P~~v~~Lv~~lk 192 (467)
T PRK14041 175 MAGLLTPKRAYELVKALK 192 (467)
T ss_pred ccCCcCHHHHHHHHHHHH
Confidence 224777777766554
No 294
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=31.33 E-value=71 Score=28.32 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=22.0
Q ss_pred hhHHhhhcCCCeEEe--eccchhhhHHHHHHHHhhcC
Q 024544 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 173 qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~a~~~~~ 207 (266)
.++.|+++|+|+|.| |+.. .....+++.+|+.+
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~--~~~~~~i~~Ik~~G 108 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN--GQAFRLIDEIRRAG 108 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc--chHHHHHHHHHHcC
Confidence 357788899998764 6442 12345667778766
No 295
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.30 E-value=1.3e+02 Score=26.00 Aligned_cols=45 Identities=29% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC
Q 024544 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG 221 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~ 221 (266)
+.+.+.|+|.+.+-|.. +.+...+.++.+..+ ...+++|+.+.++
T Consensus 92 ~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g-~~~i~~sid~~~~ 136 (241)
T PRK13585 92 ASLLDLGVDRVILGTAA-VENPEIVRELSEEFG-SERVMVSLDAKDG 136 (241)
T ss_pred HHHHHcCCCEEEEChHH-hhChHHHHHHHHHhC-CCcEEEEEEeeCC
Confidence 44456899998887654 223334444444443 2456777776543
No 296
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=31.25 E-value=91 Score=28.86 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=25.0
Q ss_pred ccccceeeecCCCceeecCchHHHhhhHHhhh-hhhhhcccccCCcc
Q 024544 209 TIPAWFSFNSKDGINVVSGDSILECASIADSC-EQVVAVGINCTSPR 254 (266)
Q Consensus 209 ~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~-~~~~avGiNC~~p~ 254 (266)
+.|+++|+...+...+ -...++.+..++.. ..++++-+|++.|.
T Consensus 128 ~~plivsi~g~~~~~~--~~~~~d~~~~~~~~~~~ad~ielN~scP~ 172 (327)
T cd04738 128 GGPLGVNIGKNKDTPL--EDAVEDYVIGVRKLGPYADYLVVNVSSPN 172 (327)
T ss_pred CCeEEEEEeCCCCCcc--cccHHHHHHHHHHHHhhCCEEEEECCCCC
Confidence 5899999965432211 11234444333331 23788999998773
No 297
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=31.14 E-value=2.2e+02 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHhhhhhHHhhhcC--CCeEEee-----ccchhhhHHHHHHHHhhcCccccccee
Q 024544 167 KEFHRRRVLILANSG--ADLIAFE-----TIPNKLEAKAYAELLEEEGITIPAWFS 215 (266)
Q Consensus 167 ~~~~~~qi~~l~~~g--vD~i~~E-----T~~~~~E~~a~~~a~~~~~~~~Pv~iS 215 (266)
++.+..+++.|.+.| +|.|-+- ..+ ..++...++.+.+.+ +||.||
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l~~~~~~G--l~i~IT 239 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNALDRFASLG--LPIHIT 239 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHHHHHHTTT--SEEEEE
T ss_pred HHHHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHHHHHHHcC--CceEEE
Confidence 566778899998877 4888543 233 677788888887766 899886
No 298
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.93 E-value=1e+02 Score=27.68 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccc
Q 024544 99 RRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGA 145 (266)
Q Consensus 99 ~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~ 145 (266)
+.+++.-+.||+.+ . + ..+.||+-|.|.
T Consensus 205 eE~i~v~~~AR~~f-----------------~-~-pv~iGCmrP~Ge 232 (275)
T COG1856 205 EEAIKVVKYARKKF-----------------P-N-PVSIGCMRPRGE 232 (275)
T ss_pred HHHHHHHHHHHHhC-----------------C-C-CeeEeecCcCch
Confidence 45666667776654 1 2 568899999885
No 299
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.91 E-value=74 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=30.1
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccce
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
++++.+...|+|.|++.+... .++...++-+++.+ +||+.
T Consensus 46 ~~i~~~i~~~~d~Iiv~~~~~-~~~~~~l~~~~~~g--Ipvv~ 85 (257)
T PF13407_consen 46 EQIEQAISQGVDGIIVSPVDP-DSLAPFLEKAKAAG--IPVVT 85 (257)
T ss_dssp HHHHHHHHTTESEEEEESSST-TTTHHHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHhcCCEEEecCCCH-HHHHHHHHHHhhcC--ceEEE
Confidence 467778889999999887765 45566777777755 78875
No 300
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=30.79 E-value=54 Score=29.44 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=28.1
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
+...++.|+|.|++--+.+.+|++.+++++|-
T Consensus 84 i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 84 IKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred HHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 45566899999999999999999999998875
No 301
>PRK01060 endonuclease IV; Provisional
Probab=30.75 E-value=3.7e+02 Score=23.59 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=30.1
Q ss_pred HHHHhhhhhHHhh--hcCCCeEEeeccchh-----hhHHHHHHHHhhcCcccccceeeecCCCceeecCchHH
Q 024544 166 LKEFHRRRVLILA--NSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL 231 (266)
Q Consensus 166 ~~~~~~~qi~~l~--~~gvD~i~~ET~~~~-----~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~ 231 (266)
..+...+.++.+. ..||. |.+|+++.. .....+.+.++..+ -|-.+.++++-.--...|.++.
T Consensus 122 ~~~~~~e~l~~l~~~~~gv~-l~iEn~~~~~~~~~~~~~~~~~l~~~v~--~~~~vg~~lD~gH~~~~g~d~~ 191 (281)
T PRK01060 122 CLARIAESLNEALDKTQGVT-IVLENTAGQGSELGRRFEELARIIDGVE--DKSRVGVCLDTCHAFAAGYDLR 191 (281)
T ss_pred HHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCcccCCHHHHHHHHHhcC--CcccEEEEEeHHhHhhcCCChH
Confidence 3444444445442 35776 566998632 22334444555433 2333555554332234566665
No 302
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=30.75 E-value=1.5e+02 Score=26.63 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=36.1
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
-|..-++.++..++|.|++.-+-+.+.+.++++++.. + .++|-|+.
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t-G--h~v~tTlH 182 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT-G--HLVLSTLH 182 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc-C--CcEEEEec
Confidence 3555667677789999999999999999999998874 3 56776664
No 303
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=30.71 E-value=3.5e+02 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.0
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQA 79 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a 79 (266)
+-|..+....+.+.++|||+++.+.|..
T Consensus 60 Dig~t~~~~~~~~~~~gad~vTvh~~~g 87 (213)
T TIGR01740 60 DIPNTVKLQYESKIKQGADMVNVHGVAG 87 (213)
T ss_pred chHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 4477788888889999999999998754
No 304
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=30.62 E-value=1.4e+02 Score=31.41 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEee------ccchhhhHHHHHHHHhhcC---cccccceeeecCCCceeecCchHH-H
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFE------TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKDGINVVSGDSIL-E 232 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~E------T~~~~~E~~a~~~a~~~~~---~~~Pv~iSf~~~~~~~l~~G~~~~-~ 232 (266)
.+++...|.+.++.|.++||+.|=+. .++ ..+..++.++.+... ++.++++..++.+ +. +
T Consensus 181 l~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~-~~~~~~~~~ay~~l~~~~~~~~i~l~TyFg~---------~~~~ 250 (766)
T PLN02475 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLE-SHKLQAFKTAYAELESTLSGLNVLVETYFAD---------VPAE 250 (766)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCC-HHHHHHHHHHHHHHHhccCCCeEEEEccCCC---------CCHH
Confidence 67888999999999999999988432 222 235555556555431 1356777666532 12 2
Q ss_pred hhhHHhhhhhhhhcccccCC-cchhh
Q 024544 233 CASIADSCEQVVAVGINCTS-PRFIH 257 (266)
Q Consensus 233 a~~~~~~~~~~~avGiNC~~-p~~~~ 257 (266)
.+..+.+.++++++|+-++. ++.+.
T Consensus 251 ~~~~l~~lp~Vd~l~lD~v~~~~~L~ 276 (766)
T PLN02475 251 AYKTLTSLKGVTAFGFDLVRGTKTLD 276 (766)
T ss_pred HHHHHHcCCCCCEEEEEecCChhhHH
Confidence 44555553338888888874 54443
No 305
>PRK11579 putative oxidoreductase; Provisional
Probab=30.60 E-value=90 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=33.9
Q ss_pred HhhhhhHHhhhcCCCeEEee--ccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
.|.+++...+++|..+| +| --.+++|++.+++++++.+ +++.+.|.
T Consensus 76 ~H~~~~~~al~aGkhVl-~EKPla~t~~ea~~l~~~a~~~g--~~l~v~~~ 123 (346)
T PRK11579 76 THFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSAG--RVLSVFHN 123 (346)
T ss_pred HHHHHHHHHHHCCCeEE-EeCCCCCCHHHHHHHHHHHHHhC--CEEEEEee
Confidence 57888888888998766 57 3457888899988888755 56655554
No 306
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.57 E-value=1.8e+02 Score=26.17 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=43.1
Q ss_pred hhHHHHHHHhhhhhHHhhhc-CCCeEEee-c-----cchhhhHHHHHHHHhhc-CcccccceeeecCCCceeecCchHHH
Q 024544 161 VSLETLKEFHRRRVLILANS-GADLIAFE-T-----IPNKLEAKAYAELLEEE-GITIPAWFSFNSKDGINVVSGDSILE 232 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~-gvD~i~~E-T-----~~~~~E~~a~~~a~~~~-~~~~Pv~iSf~~~~~~~l~~G~~~~~ 232 (266)
++.+. ++..++.+++. |||.|++- | .-+.+|=+.+++.+.+. ..++|+++... +.+..+
T Consensus 18 iD~~~----~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~~ 84 (288)
T cd00954 18 INEDV----LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLKE 84 (288)
T ss_pred CCHHH----HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHHH
Confidence 56544 44567788888 99998543 2 12356666777655443 32578887662 344566
Q ss_pred hhhHHhhh--hhhhhcc
Q 024544 233 CASIADSC--EQVVAVG 247 (266)
Q Consensus 233 a~~~~~~~--~~~~avG 247 (266)
+++.++.. .+++++.
T Consensus 85 ai~~a~~a~~~Gad~v~ 101 (288)
T cd00954 85 SQELAKHAEELGYDAIS 101 (288)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 66655432 3444444
No 307
>PRK15447 putative protease; Provisional
Probab=30.55 E-value=78 Score=29.01 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHhhhhhHHhhhcCCCeEEee-cc------chhhhHHHHHHHHhhcCcccccceee
Q 024544 166 LKEFHRRRVLILANSGADLIAFE-TI------PNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD~i~~E-T~------~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
..+|| .++.+.|+|.|.+- .. -+.+|++.+++.+++.+ +.+++++
T Consensus 17 ~~~~~----~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g--kkvyva~ 68 (301)
T PRK15447 17 VRDFY----QRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG--KEVVLST 68 (301)
T ss_pred HHHHH----HHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC--CEEEEEe
Confidence 45566 45667899999885 22 46789999999998866 7888766
No 308
>COG1679 Predicted aconitase [General function prediction only]
Probab=30.53 E-value=96 Score=29.74 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=38.8
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhhcC--cccccceeee
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEG--ITIPAWFSFN 217 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~--~~~Pv~iSf~ 217 (266)
+.+++.+.++.. . .....+|+|.+-+ --++.|++.+.++++..+ .++|+||+.+
T Consensus 272 ~~~d~~da~~~l-~-~~~~epdli~iGcPHaS~~E~~~la~~l~~r~~~~~~~~~V~~s 328 (403)
T COG1679 272 EREDIDDAWERL-N-TADGEPDLIALGCPHASLEELRRLAELLKGRKRPAGVPLYVTTS 328 (403)
T ss_pred eHHHHHHHHHHh-h-cCCCCCCEEEeCCCCCCHHHHHHHHHHHhccCCCCCCCEEEEcC
Confidence 445555555432 2 4445689999884 568999999999998754 6789999874
No 309
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=30.40 E-value=85 Score=31.87 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=48.7
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc--
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC-- 250 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC-- 250 (266)
++...++|+|.| +|-.++++..++.+++++++.+...-+.|+++..+. + +=.-+.+.+..+.. .+++.|.|-=
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~-~--~~~~~~~~a~~l~~-~Gad~i~i~Dt~ 178 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPV-H--TLQTWVDLAKQLED-MGVDSLCIKDMA 178 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCc-c--CHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 456778999987 555777888888899999987622222345543221 1 11112333333333 3555444421
Q ss_pred --CCcchhhhhheeee
Q 024544 251 --TSPRFIHGLILSVR 264 (266)
Q Consensus 251 --~~p~~~~~~l~~l~ 264 (266)
..|..+..+++.++
T Consensus 179 G~l~P~~~~~lv~~lk 194 (593)
T PRK14040 179 GLLKPYAAYELVSRIK 194 (593)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 24777777776654
No 310
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.26 E-value=96 Score=28.32 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=45.9
Q ss_pred hhhhHHhhhcCCCeE---Eeecc---------c---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 171 RRRVLILANSGADLI---AFETI---------P---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i---~~ET~---------~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
+++++.|.++|+|.+ .+||. | +.++-..+++.+++.+ +++..+|-+- .|++.++.+.
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~G--i~~~s~~iiG------~~Et~ed~~~ 178 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLG--IPTTATMMFG------HVENPEHRVE 178 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CCceeeEEec------CCCCHHHHHH
Confidence 456778888999966 45665 2 2234355666677765 6777666542 3577777766
Q ss_pred HHhh--hhhhhhcccccCCc
Q 024544 236 IADS--CEQVVAVGINCTSP 253 (266)
Q Consensus 236 ~~~~--~~~~~avGiNC~~p 253 (266)
.+.. ..++.-.|+++.-|
T Consensus 179 ~l~~lr~l~~~~~~f~~fiP 198 (309)
T TIGR00423 179 HLLRIRKIQEKTGGFTEFIP 198 (309)
T ss_pred HHHHHHhhchhhCCeeeEEe
Confidence 5532 23556667766533
No 311
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=30.19 E-value=48 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=12.8
Q ss_pred cCchHHHhhhHHhhhhhhhhcccccCC
Q 024544 226 SGDSILECASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 226 ~G~~~~~a~~~~~~~~~~~avGiNC~~ 252 (266)
+|.+++.+...++ .+...|.+-+++
T Consensus 86 Hg~~~e~i~~ai~--~GftSVM~DgS~ 110 (286)
T PRK08610 86 HGSSFEKCKEAID--AGFTSVMIDASH 110 (286)
T ss_pred CCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 4555555544443 244556666654
No 312
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=30.07 E-value=1.3e+02 Score=27.01 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=45.2
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecC------chHHHhhhHHh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSG------DSILECASIAD 238 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G------~~~~~a~~~~~ 238 (266)
.++.|++.|++-+++-|+. ..+-..+-+++++.+ -.+++++.++.+....+| .++.+.+..+.
T Consensus 89 ~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~ 157 (241)
T COG0106 89 DVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLE 157 (241)
T ss_pred HHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccccccccccccCCHHHHHHHHH
Confidence 3566778999999999998 667777788888876 567889988765433344 35555555544
No 313
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.92 E-value=1.2e+02 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHhhhhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcccccceeeecCCCce
Q 024544 166 LKEFHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGIN 223 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~ 223 (266)
..+.|..|++++...| |++++=+-+ .-.++..+++.+|+.+ .|++ ++|-.+++.
T Consensus 95 ~~~~f~~ql~~~~~~g-Dvli~iS~SG~s~~v~~a~~~Ak~~G--~~vI-~IT~~~~s~ 149 (196)
T PRK10886 95 HDEVYAKQVRALGHAG-DVLLAISTRGNSRDIVKAVEAAVTRD--MTIV-ALTGYDGGE 149 (196)
T ss_pred HHHHHHHHHHHcCCCC-CEEEEEeCCCCCHHHHHHHHHHHHCC--CEEE-EEeCCCCCh
Confidence 3557888889888766 888776554 5667888888888866 6655 665544433
No 314
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=29.83 E-value=88 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=30.5
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccce
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
.|.+.+..++++|.+++. ++...+.+.+.+++++++.+ .++++
T Consensus 79 ~h~e~~~~aL~aGk~Vi~-~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIV-LSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred HHHHHHHHHHHcCCcEEE-ecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 366667777788988875 67666777888888888754 44444
No 315
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=29.76 E-value=3.7e+02 Score=25.49 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.2
Q ss_pred CchhHHHHhhhhhhccccEEEech
Q 024544 53 SPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
+|+...++-+++..+|.|+|.-.-
T Consensus 139 ~~~~~a~~~~~~~~gGvD~IKdDe 162 (364)
T cd08210 139 SAAELAELAYAFALGGIDIIKDDH 162 (364)
T ss_pred CHHHHHHHHHHHHhcCCCeeecCc
Confidence 678888899999999999996543
No 316
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=29.38 E-value=1.1e+02 Score=26.77 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=41.4
Q ss_pred eeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH---hhhhhhhhcccccC
Q 024544 187 FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINCT 251 (266)
Q Consensus 187 ~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~---~~~~~~~avGiNC~ 251 (266)
..++.+.+.++.+-+++++.+...+||+-+.+. +|..+.|-+..++...+ ....++...|+-|-
T Consensus 98 ~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg-~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th 164 (229)
T TIGR00044 98 VHTIDSLKIAKKLNEQREKLQPPLNVLLQINIS-DEESKSGIQPEELLELAIQIEELKHLKLRGLMTI 164 (229)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEEECC-CCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEe
Confidence 457788888888877776655446677777542 13446787766555443 33356677888885
No 317
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.14 E-value=2.9e+02 Score=27.31 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccce
Q 024544 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPV 134 (266)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (266)
+.+.+.-+.++++|+++|.-.+=+.+ ....++.-++.+.+| ..-.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~-----------------~~~~~~~i~~ik~~~------------------p~~~ 270 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH-----------------QEKMLEALRAVRALD------------------PGVP 270 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc-----------------cHHHHHHHHHHHHHC------------------CCCe
Q ss_pred EEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEE---------------eeccchhhhHHHH
Q 024544 135 LVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIA---------------FETIPNKLEAKAY 199 (266)
Q Consensus 135 ~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~---------------~ET~~~~~E~~a~ 199 (266)
+|||.+.-+-. ++.|.++|+|.|- -.+.|.+.-+..+
T Consensus 271 v~agnv~t~~~----------------------------a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~ 322 (479)
T PRK07807 271 IVAGNVVTAEG----------------------------TRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLEC 322 (479)
T ss_pred EEeeccCCHHH----------------------------HHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHH
Q ss_pred HHHHhhcCcccccce
Q 024544 200 AELLEEEGITIPAWF 214 (266)
Q Consensus 200 ~~a~~~~~~~~Pv~i 214 (266)
.+++++.+ +||+.
T Consensus 323 ~~~~~~~~--~~via 335 (479)
T PRK07807 323 AAAARELG--AHVWA 335 (479)
T ss_pred HHHHHhcC--CcEEe
No 318
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=29.08 E-value=1.3e+02 Score=28.58 Aligned_cols=27 Identities=41% Similarity=0.378 Sum_probs=17.9
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeE-Eeeccc
Q 024544 161 VSLETLKEFHRRRVLILANSGADLI-AFETIP 191 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i-~~ET~~ 191 (266)
++.+++.+ ++..+..+|||+| ..|+..
T Consensus 143 ld~~~la~----~~~~l~~gGvD~Ikdde~~g 170 (367)
T cd08205 143 LSPEELAE----LAYELALGGIDLIKDDELLA 170 (367)
T ss_pred CCHHHHHH----HHHHHHhcCCCeeecccccc
Confidence 56655444 6677888999998 445443
No 319
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=29.06 E-value=1.2e+02 Score=27.47 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=29.0
Q ss_pred hHHhhhcCCCeEEeec---cchhhhHHHHHHHHhhcCcccccceee
Q 024544 174 VLILANSGADLIAFET---IPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET---~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
++.+..+|.|++++.. --+..++...+.+++..+ .+.+|-+
T Consensus 32 ~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g--~~~lVRv 75 (267)
T PRK10128 32 AEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYA--SQPVIRP 75 (267)
T ss_pred HHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcC--CCeEEEC
Confidence 4667778999999984 446667777777777655 5555555
No 320
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.87 E-value=90 Score=27.69 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=38.0
Q ss_pred hhHHhhhcCCCeEEe--eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
.++.|+++|+|.|.| |..++ ...+++.+|+.+ .++-+.+++. -+|+++....++.. ++.|.+-+
T Consensus 83 ~i~~~~~aGad~It~H~Ea~~~---~~~~l~~Ik~~g--~~~kaGlaln------P~Tp~~~i~~~l~~---vD~VLiMt 148 (228)
T PRK08091 83 VAKACVAAGADIVTLQVEQTHD---LALTIEWLAKQK--TTVLIGLCLC------PETPISLLEPYLDQ---IDLIQILT 148 (228)
T ss_pred HHHHHHHhCCCEEEEcccCccc---HHHHHHHHHHCC--CCceEEEEEC------CCCCHHHHHHHHhh---cCEEEEEE
Confidence 357788899999865 65443 455677788766 4333334332 35566555444432 44555544
Q ss_pred CCc
Q 024544 251 TSP 253 (266)
Q Consensus 251 ~~p 253 (266)
+.|
T Consensus 149 V~P 151 (228)
T PRK08091 149 LDP 151 (228)
T ss_pred ECC
Confidence 433
No 321
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=28.85 E-value=1.4e+02 Score=28.91 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=33.3
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhc
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIP-NKLEAKAYAELLEEE 206 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~ 206 (266)
..+...++.+..++.|.+.+++++.+.++. +.++++.+++.+++.
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~ 62 (452)
T cd00578 17 LLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEA 62 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhc
Confidence 345566666666677766788888888888 888888888777664
No 322
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=28.80 E-value=62 Score=29.34 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=29.3
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
.+...++.|++.|++=.+.+.+|++.++++.|-
T Consensus 82 ~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 82 LIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred HHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 455677899999999999999999999999874
No 323
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=28.78 E-value=94 Score=28.73 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=36.7
Q ss_pred CCCeEEeeccchhhhH---HHH---HHHHh---hcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC
Q 024544 181 GADLIAFETIPNKLEA---KAY---AELLE---EEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT 251 (266)
Q Consensus 181 gvD~i~~ET~~~~~E~---~a~---~~a~~---~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~ 251 (266)
|+|+..=|.++.-.-. +.. ...+. ....+.|+++++.-. +-+.+.+++..+.+ .+.++|-|||.
T Consensus 25 ~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdiN~G 97 (312)
T PRK10550 25 DYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQ------YPQWLAENAARAVE-LGSWGVDLNCG 97 (312)
T ss_pred CCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccC------CHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 4899999988742111 111 11111 111246888877311 12234455555554 57899999998
Q ss_pred Ccc
Q 024544 252 SPR 254 (266)
Q Consensus 252 ~p~ 254 (266)
.|.
T Consensus 98 CP~ 100 (312)
T PRK10550 98 CPS 100 (312)
T ss_pred CCc
Confidence 764
No 324
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=28.70 E-value=1e+02 Score=28.50 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=44.8
Q ss_pred hhhhHHhhhcCCCeEE---eecc---------c---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 171 RRRVLILANSGADLIA---FETI---------P---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~---~ET~---------~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
.++++.|.++|+|.+. +||+ | +.++...+++.+++.+ +++...+.+- .|++.++.+.
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~G--i~v~~~~iiG------lgEt~ed~~~ 214 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLG--LPTTATMMFG------HVETLEDRIE 214 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CCccceeEee------CCCCHHHHHH
Confidence 5677889999998774 4666 1 4455566677777766 6766555442 3777777666
Q ss_pred HHhh--hhhhhhccccc
Q 024544 236 IADS--CEQVVAVGINC 250 (266)
Q Consensus 236 ~~~~--~~~~~avGiNC 250 (266)
.+.. ..++...|+..
T Consensus 215 ~l~~l~~l~~~~~~~~~ 231 (340)
T TIGR03699 215 HLERIRELQDKTGGFTA 231 (340)
T ss_pred HHHHHHHhchhhCCeeE
Confidence 5432 13455555544
No 325
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=28.68 E-value=60 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=13.5
Q ss_pred cCchHHHhhhHHhhhhhhhhcccccCC
Q 024544 226 SGDSILECASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 226 ~G~~~~~a~~~~~~~~~~~avGiNC~~ 252 (266)
+|.+++.+...++ .+...|.+-+++
T Consensus 86 Hg~~~e~i~~ai~--~GftSVM~DgS~ 110 (285)
T PRK07709 86 HGSSFEKCKEAID--AGFTSVMIDASH 110 (285)
T ss_pred CCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 4555655554444 245556666654
No 326
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.63 E-value=74 Score=29.54 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=36.9
Q ss_pred CC-CeEEeeccchhhhHHH-HHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 181 GA-DLIAFETIPNKLEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 181 gv-D~i~~ET~~~~~E~~a-~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
|+ |+.+=|.+..-.=+.. --+.+.....+.|+++++.-. +.+.+.+++..+.+ .++++|-|||..|.
T Consensus 24 g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IDlN~GCP~ 92 (318)
T TIGR00742 24 SKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGS------DPNDLAKCAKIAEK-RGYDEINLNVGCPS 92 (318)
T ss_pred CCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccC------CHHHHHHHHHHHHh-CCCCEEEEECCCCH
Confidence 55 7777776654310000 002222223357888777421 33445566666655 47899999998774
No 327
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.58 E-value=1e+02 Score=28.35 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=32.8
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccc
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAW 213 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~ 213 (266)
-|..++..+..+++|+|++-+.+. ++..+++.+++.+.+.|++
T Consensus 183 D~~~~v~~i~~~~pd~V~~~~~~~--~~~~~~~~~~~~G~~~~~~ 225 (351)
T cd06334 183 DQKAQWLQIRRSGPDYVILWGWGV--MNPVAIKEAKRVGLDDKFI 225 (351)
T ss_pred cHHHHHHHHHHcCCCEEEEecccc--hHHHHHHHHHHcCCCceEE
Confidence 467788888899999999766554 7788888888877544543
No 328
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.48 E-value=1.8e+02 Score=25.64 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=34.9
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCce-ee-----cCchHHHhhhHHhh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGIN-VV-----SGDSILECASIADS 239 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~-l~-----~G~~~~~a~~~~~~ 239 (266)
++.+.+.|+|-+.+-|.. +.+...+-+++++.+ +-.+++|+.+..+++ .. .+.++.+.+..+..
T Consensus 88 ~~~~l~~Ga~kvvigt~a-~~~p~~~~~~~~~~g-~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~ 157 (232)
T PRK13586 88 AKRLLSLDVNALVFSTIV-FTNFNLFHDIVREIG-SNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE 157 (232)
T ss_pred HHHHHHCCCCEEEECchh-hCCHHHHHHHHHHhC-CCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh
Confidence 344556899998886654 222233344455554 346888888732232 22 23355566665543
No 329
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=28.34 E-value=2.3e+02 Score=26.44 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEee-c-cch-hhh-HHHHHHHHhhc--CcccccceeeecCCCceeecC---------
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFE-T-IPN-KLE-AKAYAELLEEE--GITIPAWFSFNSKDGINVVSG--------- 227 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~E-T-~~~-~~E-~~a~~~a~~~~--~~~~Pv~iSf~~~~~~~l~~G--------- 227 (266)
..++...|++-++.|.++||+.|=+- . ++. ..+ +...+++++.. +.+.++++-+++. +.....+
T Consensus 151 ~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~v~~~n~~~~g~~~~v~~HvC~G-~~~~~~~~~~~~~~~~ 229 (339)
T PRK09121 151 AWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYG-YGIKANTDWKKTLGSE 229 (339)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHHHHHHHHHHHHHHHcCCCCceEEEEeCC-CCCCCccccccccccc
Confidence 45678899999999999999977443 2 221 122 44555655543 2234555545443 2110000
Q ss_pred -chHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 228 -DSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 228 -~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
.+....+..+.+ .+++.+.+-+..+.
T Consensus 230 ~g~y~~i~~~l~~-~~vd~~~lE~~~~r 256 (339)
T PRK09121 230 WRQYEEAFPKLQK-SNIDIISLECHNSR 256 (339)
T ss_pred cccHHHHHHHHHh-CCCCEEEEEecCCC
Confidence 234455566654 57888888876544
No 330
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=28.33 E-value=1.1e+02 Score=30.55 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceee
Q 024544 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
..=+++|+|+|+---|.+.+-...-+..+|+.+++.|++-.+
T Consensus 175 k~KvdaGaDFIiTQlFYd~e~flkfv~~cR~~gi~~PIvPGI 216 (590)
T KOG0564|consen 175 KEKVDAGADFIITQLFYDVETFLKFVKDCRAAGINVPIVPGI 216 (590)
T ss_pred HHhhcccchhhhhhhhcCHHHHHHHHHHHHHhCCCCCccccc
Confidence 334569999999888888888888888899988888877554
No 331
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.23 E-value=1.1e+02 Score=25.76 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=44.7
Q ss_pred CCCCCCchhHHHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechh
Q 024544 2 VSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASY 77 (266)
Q Consensus 2 ~~~~~~~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy 77 (266)
+-||+|-...+++... .|+..|++.+-..-|+ -.-||.+.++-+.+-+.|-++|++--=
T Consensus 8 IMGS~SD~~~mk~Aa~--------------~L~~fgi~ye~~VvSA---HRTPe~m~~ya~~a~~~g~~viIAgAG 66 (162)
T COG0041 8 IMGSKSDWDTMKKAAE--------------ILEEFGVPYEVRVVSA---HRTPEKMFEYAEEAEERGVKVIIAGAG 66 (162)
T ss_pred EecCcchHHHHHHHHH--------------HHHHcCCCeEEEEEec---cCCHHHHHHHHHHHHHCCCeEEEecCc
Confidence 3478888888888877 6788888774332232 356999999999999999999987543
No 332
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=28.23 E-value=91 Score=27.70 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=31.7
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCc--ccccceee
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI--TIPAWFSF 216 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~--~~Pv~iSf 216 (266)
|..+++.+.+.++|.|++=+ +..++..+++.+++.+. +.|++-+.
T Consensus 175 ~~~~i~~l~~~~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 221 (333)
T cd06332 175 FSAELAQIRAAKPDAVFVFL--PGGMAVNFVKQYDQAGLKKKIPLYGPG 221 (333)
T ss_pred hHHHHHHHHhcCCCEEEEec--ccchHHHHHHHHHHcCcccCCceeccC
Confidence 45577778889999999843 33567788888888765 55665433
No 333
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.18 E-value=97 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=21.3
Q ss_pred CchhHHHHhhhhhhccccEEEechhhh
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQA 79 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a 79 (266)
..+...++-+...++|.++|..-.+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~ 43 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGAS 43 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcC
Confidence 566777777888899999998877654
No 334
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=27.79 E-value=4.9e+02 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=15.0
Q ss_pred hHHhhhcCCCeEEeeccc-hhhhH
Q 024544 174 VLILANSGADLIAFETIP-NKLEA 196 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~-~~~E~ 196 (266)
++.+.+.|+|.+-+.... ++.|+
T Consensus 227 l~~~~e~g~dvl~~d~~~~dl~ea 250 (321)
T cd03309 227 VPSMAEMGVDSWNVVMTANNTAEL 250 (321)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHH
Confidence 455666788888876554 66553
No 335
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=27.53 E-value=2.2e+02 Score=26.01 Aligned_cols=88 Identities=13% Similarity=-0.073 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEee-c----cchh---hhHH----HHHHHHhhcCcccccceeeecCCC--ceeecCc
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFE-T----IPNK---LEAK----AYAELLEEEGITIPAWFSFNSKDG--INVVSGD 228 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~E-T----~~~~---~E~~----a~~~a~~~~~~~~Pv~iSf~~~~~--~~l~~G~ 228 (266)
.+.+.+.+++.++.|.++||+.|-+. . ..+. +++. .+.+++...+.+.++.+-.+..+. ....+|
T Consensus 150 ~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~- 228 (332)
T cd03311 150 AMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG- 228 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-
Confidence 46788899999999999999977543 2 2211 1222 233334332224555555543321 122233
Q ss_pred hHHHhhhHHhhhhhhhhcccccCC
Q 024544 229 SILECASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 229 ~~~~a~~~~~~~~~~~avGiNC~~ 252 (266)
+....+..+.+ .+++++++-...
T Consensus 229 ~y~~i~~~l~~-~~vd~~~le~~~ 251 (332)
T cd03311 229 GYEPIAEYIFE-LDVDVFFLEYDN 251 (332)
T ss_pred cHHHHHHHHHh-CCCCEEEEEEcC
Confidence 23445555554 357777776654
No 336
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=27.29 E-value=62 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=29.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
.+...++.|+|.|++--+.+.+|++.++++++.
T Consensus 76 ~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 76 LIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred HHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 456778999999999999999999999999984
No 337
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.27 E-value=4.3e+02 Score=23.20 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred ccCch--hHHHHhhhhhhccccEEEec
Q 024544 51 VSSPH--LVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 51 l~~Pe--~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.-+|+ ...+.-+...++|||+|.-+
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELG 34 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 34454 56667778889999999988
No 338
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=27.24 E-value=55 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.0
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQAT 80 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~ 80 (266)
+.++.+.+.+...++.|.+||+.|.=..+
T Consensus 67 t~~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 67 TSSEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCchHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 57788999999999999999999876444
No 339
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=27.20 E-value=85 Score=31.31 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=22.2
Q ss_pred cCCCeEEeec-cchhhhHHHHHHHHhhcCccccc
Q 024544 180 SGADLIAFET-IPNKLEAKAYAELLEEEGITIPA 212 (266)
Q Consensus 180 ~gvD~i~~ET-~~~~~E~~a~~~a~~~~~~~~Pv 212 (266)
..+|++|+|| -|++.+++...+.+++..+++..
T Consensus 377 PyADllW~ET~~Pd~~~a~~Fa~~V~~~~P~k~L 410 (526)
T PF00463_consen 377 PYADLLWMETKTPDLAQAKEFAEGVHAVYPGKKL 410 (526)
T ss_dssp GG-SEEEE--SS--HHHHHHHHHHHHHHSTT-EE
T ss_pred cccCeeeEecCCCCHHHHHHHHHHHHHhCCcceE
Confidence 5689999997 79999999999999986544443
No 340
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=27.15 E-value=4.5e+02 Score=23.39 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=36.7
Q ss_pred hhHHhhhcCCCeEEeeccc-hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhh----hhhhcc
Q 024544 173 RVLILANSGADLIAFETIP-NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE----QVVAVG 247 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~-~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~----~~~avG 247 (266)
.++.+.+.|+|.+-+|... ++.++ .+..+ ....+...+.+. +..|+. +++.+.+++.. +-..++
T Consensus 213 ~~~~l~~~~~d~~~~d~~~~d~~~~------~~~~~--~~~~i~Ggv~~~--~~~~~~-e~i~~~v~~~l~~~~~~~il~ 281 (306)
T cd00465 213 LLEEMIQLGVDVISFDMTVNEPKEA------IEKVG--EKKTLVGGVDPG--YLPATD-EECIAKVEELVERLGPHYIIN 281 (306)
T ss_pred HHHHHHHhCcceEecccccCCHHHH------HHHhC--CCEEEECCCCcc--ccCCCH-HHHHHHHHHHHHHhCCCeEEe
Confidence 3566777899999999775 44443 23333 123344444443 345654 55555544321 114566
Q ss_pred cccC
Q 024544 248 INCT 251 (266)
Q Consensus 248 iNC~ 251 (266)
-+|.
T Consensus 282 ~~cg 285 (306)
T cd00465 282 PDCG 285 (306)
T ss_pred CCCC
Confidence 7785
No 341
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=27.07 E-value=2.1e+02 Score=27.38 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.6
Q ss_pred hhHHHHhhhhhhccccEEEechhhhhhh
Q 024544 55 HLVRKVHLDYLDAGANIIITASYQATIQ 82 (266)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~a~~~ 82 (266)
+++.++++-|.+-.|..++.|-...+..
T Consensus 179 ~~~~~l~~~f~~~d~~l~EINPl~~~~~ 206 (392)
T PRK14046 179 KTIMGCYRAFRDLDATMLEINPLVVTKD 206 (392)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcceEcCC
Confidence 5888899999999999999998766543
No 342
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=26.71 E-value=70 Score=27.98 Aligned_cols=75 Identities=21% Similarity=0.186 Sum_probs=41.8
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC-cee------ecCchHHHhhhHHhhhhhhhhc
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG-INV------VSGDSILECASIADSCEQVVAV 246 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~-~~l------~~G~~~~~a~~~~~~~~~~~av 246 (266)
++.+.+.|+|-+++-|.. +.....+-++++..+ +-.+++|+.+.++ ... .++.++.+.+..+.+ .++..+
T Consensus 88 ~~~ll~~Ga~~Vvigt~~-~~~~~~l~~~~~~~g-~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~i 164 (229)
T PF00977_consen 88 AERLLDAGADRVVIGTEA-LEDPELLEELAERYG-SQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE-LGAGEI 164 (229)
T ss_dssp HHHHHHTT-SEEEESHHH-HHCCHHHHHHHHHHG-GGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH-TT-SEE
T ss_pred HHHHHHhCCCEEEeChHH-hhchhHHHHHHHHcC-cccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh-cCCcEE
Confidence 445667899988887643 222233444555554 3468889987765 222 223457777776665 345555
Q ss_pred ccccC
Q 024544 247 GINCT 251 (266)
Q Consensus 247 GiNC~ 251 (266)
-+++.
T Consensus 165 i~tdi 169 (229)
T PF00977_consen 165 ILTDI 169 (229)
T ss_dssp EEEET
T ss_pred EEeec
Confidence 55553
No 343
>PRK08445 hypothetical protein; Provisional
Probab=26.70 E-value=1.5e+02 Score=27.89 Aligned_cols=73 Identities=11% Similarity=-0.056 Sum_probs=48.1
Q ss_pred hhhhHHhhhcCCCeE---Eeeccch------------hhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhh
Q 024544 171 RRRVLILANSGADLI---AFETIPN------------KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i---~~ET~~~------------~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
.++++.|.++|+|-+ .+||..+ ..+-..+++.+++.| +++..++-+- .|++.++.+.
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~G--i~~~sg~i~G------~~Et~edr~~ 215 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIG--MKSTATMMFG------TVENDEEIIE 215 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CeeeeEEEec------CCCCHHHHHH
Confidence 678899999999955 4896653 123345556667765 8888777653 4777777776
Q ss_pred HHhh--hhhhhhcccccC
Q 024544 236 IADS--CEQVVAVGINCT 251 (266)
Q Consensus 236 ~~~~--~~~~~avGiNC~ 251 (266)
.+.. ..++...|++..
T Consensus 216 ~l~~lreLq~~~~g~~~f 233 (348)
T PRK08445 216 HWERIRDLQDETGGFRAF 233 (348)
T ss_pred HHHHHHHHHHHhCCeeEE
Confidence 5532 245666777763
No 344
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=26.61 E-value=6.1e+02 Score=24.72 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=65.3
Q ss_pred cCchhHHHHhhhhhhccccEEEechh-hhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASY-QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy-~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
.+|-.|+...+-=.+.|..+++-.|= |.+..+-- .|+.+....+.+. ++|.+.- .+
T Consensus 21 ahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~---~iA~~~g-------------------f~ 77 (420)
T TIGR02810 21 AHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGY-TGMTPADFRDFVE---TIADRIG-------------------FP 77 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHH---HHHHHcC-------------------CC
Confidence 47777777666667778887777764 44444321 3676654443333 3444431 12
Q ss_pred ccceEEEEe-cccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeec-cc
Q 024544 131 SRPVLVAAS-VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET-IP 191 (266)
Q Consensus 131 ~~~~~VaGs-iGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET-~~ 191 (266)
..+++..|. +||-. + .+++.+++-..-+..+++.+++|-+.|-+-+ |+
T Consensus 78 ~~~iiLggDHlGPn~------------W-q~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 127 (420)
T TIGR02810 78 RDRLILGGDHLGPNP------------W-QHLPADEAMAKAAALVDAYVEAGFTKIHLDASMG 127 (420)
T ss_pred hhcEEeecCCCCCcc------------c-cCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 334555555 56621 2 2467788888888899999999999999884 44
No 345
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.35 E-value=2.4e+02 Score=22.93 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=34.8
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHh-hcCc-ccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhh
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLE-EEGI-TIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVA 245 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~-~~~~-~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~a 245 (266)
.+.+++.+.+.|+|.|.+-- .+++.++ .... +.|+++........ ....+++..++.. .++++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHHcCCCE
Confidence 44567778889999876553 2333332 2222 47888766432211 2234444444332 35555
Q ss_pred ccccc
Q 024544 246 VGINC 250 (266)
Q Consensus 246 vGiNC 250 (266)
+.+-+
T Consensus 82 i~v~~ 86 (201)
T cd00945 82 IDVVI 86 (201)
T ss_pred EEEec
Confidence 55433
No 346
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=26.29 E-value=2.4e+02 Score=25.69 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHhhhhhHH-hhhcCCCeEEeeccchhhhHHHHHHHHhhcC
Q 024544 168 EFHRRRVLI-LANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 168 ~~~~~qi~~-l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (266)
++.+.|+++ |.+-+||.+=.-.+++.+=++.+.+.+++.+
T Consensus 58 ~~v~~Ql~av~~D~~v~avKtGML~~~eiie~va~~l~~~~ 98 (263)
T COG0351 58 EFVEAQLDAVFSDIPVDAVKTGMLGSAEIIEVVAEKLKKYG 98 (263)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCcCCHHHHHHHHHHHHhcC
Confidence 567778887 6778999999999999999999999999876
No 347
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.25 E-value=1.4e+02 Score=26.49 Aligned_cols=77 Identities=26% Similarity=0.257 Sum_probs=49.4
Q ss_pred hHHhhhcCCCeEEeeccchhhhHH-HHHHHHhhcCcccccceeeecCCCcee--ecCchHHHhhhHHhhhhhhhhccccc
Q 024544 174 VLILANSGADLIAFETIPNKLEAK-AYAELLEEEGITIPAWFSFNSKDGINV--VSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~-a~~~a~~~~~~~~Pv~iSf~~~~~~~l--~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
+++|..-|+.=|.+-|=. ..++- .+.+.+++.|.++..+.+|.+.++... .+..++.+++..+.. +++++|=+-|
T Consensus 112 ~~AL~alg~~RIalvTPY-~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisC 189 (239)
T TIGR02990 112 VDGLAALGVRRISLLTPY-TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSC 189 (239)
T ss_pred HHHHHHcCCCEEEEECCC-cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeC
Confidence 455666688888887743 44443 455667777766677777777655442 233445555554444 5789999999
Q ss_pred CC
Q 024544 251 TS 252 (266)
Q Consensus 251 ~~ 252 (266)
+.
T Consensus 190 Tn 191 (239)
T TIGR02990 190 TA 191 (239)
T ss_pred CC
Confidence 96
No 348
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=26.24 E-value=2e+02 Score=24.65 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHhhhcCCCeEEeeccchhhhHHHHHHHHhhcC
Q 024544 175 LILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (266)
+.+.+.|+|++-+=..+...-++.+++.+++.+
T Consensus 70 ~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 70 ESKIKQGADMVNVHGVAGSESVEAAKEAASEGG 102 (213)
T ss_pred HHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC
Confidence 335568999999998888877888998887754
No 349
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=26.17 E-value=1.2e+02 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=17.6
Q ss_pred CchhHHHHhhhhhhccccEEEec
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
..+...++-+...++|.+.|..-
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 34556667777889999999984
No 350
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.17 E-value=5.4e+02 Score=23.97 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=42.5
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.++++.+.+.|+|.|.+- |. ..+.++...++++++.- +..+-+.|-+.++ .|..+..++..++
T Consensus 144 ~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l-~~~i~ig~H~Hnn----lGla~ANslaAi~ 211 (333)
T TIGR03217 144 KLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVL-KPETQVGFHAHHN----LSLAVANSIAAIE 211 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhC-CCCceEEEEeCCC----CchHHHHHHHHHH
Confidence 45557777888999998664 43 35678888888888642 1226678877766 3555555554443
No 351
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.17 E-value=5.4e+02 Score=23.98 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=42.1
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.++++.+.+.|+|.|.+- |. ..+.++...++++++.- +..+-+.|-+.++ -|..+..++..+.
T Consensus 145 ~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l-~~~i~ig~H~Hnn----lGla~ANslaAi~ 212 (337)
T PRK08195 145 KLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAAL-KPDTQVGFHGHNN----LGLGVANSLAAVE 212 (337)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCCeEEEEeCCC----cchHHHHHHHHHH
Confidence 45556777888999988764 43 34678888888888642 1235567877765 3555555555443
No 352
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=26.13 E-value=1.5e+02 Score=27.54 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=32.5
Q ss_pred hhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCC---------c--eeecCchHHHhhhHHh
Q 024544 177 LANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDG---------I--NVVSGDSILECASIAD 238 (266)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~---------~--~l~~G~~~~~a~~~~~ 238 (266)
+++.|+-.+.++ +..|++.+.++.++.+....+.+-+....+ + ..+-|.+.+++...++
T Consensus 90 a~~~g~~~~~id---s~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~~~ 159 (373)
T cd06828 90 ALELGILRINVD---SLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYR 159 (373)
T ss_pred HHHcCCeEEEEC---CHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHH
Confidence 444566555544 677777777777654433556665543211 1 1234877776655543
No 353
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.09 E-value=1.4e+02 Score=22.71 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHhhhcCCCeEEeec--cchhhhHHHHHHHHhhcCc-ccccceee
Q 024544 175 LILANSGADLIAFET--IPNKLEAKAYAELLEEEGI-TIPAWFSF 216 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET--~~~~~E~~a~~~a~~~~~~-~~Pv~iSf 216 (266)
+.+.+..+|++.+=. -+....++.+++.+|+.++ +.++++.-
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 334456788887753 3455566677777777654 45555543
No 354
>PRK05926 hypothetical protein; Provisional
Probab=26.06 E-value=1.1e+02 Score=28.93 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=51.4
Q ss_pred hhhhhHHhhhcCCCeEE---e----eccc--------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhh
Q 024544 170 HRRRVLILANSGADLIA---F----ETIP--------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~---~----ET~~--------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
.+++++.|.++|+|.+. + |++. +.+|-..+++.+++.| +++..++-+ ..|++.++-+
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~G--i~~~sgmi~------G~gEt~edrv 239 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLG--IPSNATMLC------YHRETPEDIV 239 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CcccCceEE------eCCCCHHHHH
Confidence 46778899999998876 2 3333 2345556777778766 666655433 3689999888
Q ss_pred hHHhh--hhhhhhcccccCCc
Q 024544 235 SIADS--CEQVVAVGINCTSP 253 (266)
Q Consensus 235 ~~~~~--~~~~~avGiNC~~p 253 (266)
..+.. ..++.-+||.+.-|
T Consensus 240 ~~l~~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 240 THMSKLRALQDKTSGFKNFIL 260 (370)
T ss_pred HHHHHHHhcCCccCCeeeeEe
Confidence 76532 25778888888644
No 355
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.04 E-value=3.4e+02 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=24.5
Q ss_pred ccccCchhHHHHhhhhhhccccEEEechhh
Q 024544 49 CLVSSPHLVRKVHLDYLDAGANIIITASYQ 78 (266)
Q Consensus 49 ~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (266)
+.++.++.+.++=+..-++||+++..-.|.
T Consensus 101 CsiEs~e~~~~~A~~lk~~ga~~~r~~~fK 130 (335)
T PRK08673 101 CSVESEEQILEIARAVKEAGAQILRGGAFK 130 (335)
T ss_pred CccCCHHHHHHHHHHHHHhchhhccCcEec
Confidence 456888888888888889999988877763
No 356
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=26.03 E-value=87 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=23.3
Q ss_pred ccccceeeecCCCceeecCchHHHhhhHHhh-hhhhhhcccccCCcc
Q 024544 209 TIPAWFSFNSKDGINVVSGDSILECASIADS-CEQVVAVGINCTSPR 254 (266)
Q Consensus 209 ~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~-~~~~~avGiNC~~p~ 254 (266)
..|+++++. |.++++.+..+.. ...+++|-|||..|.
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v~~~~d~IdiN~gCP~ 104 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTIAEHADIIEINAHCRQ 104 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 368888883 4445554443321 136789999998765
No 357
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=25.90 E-value=2e+02 Score=24.82 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=27.2
Q ss_pred hhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeee
Q 024544 171 RRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
.+.++...+.|+|++=+|--. .....++..+++. +.++++|+.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~--~~kiI~S~H 121 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKG--NTKIIGSYH 121 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhC--CCEEEEEec
Confidence 334455666789999999543 3344445544442 478999995
No 358
>PRK08005 epimerase; Validated
Probab=25.86 E-value=93 Score=27.19 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=38.2
Q ss_pred hhHHhhhcCCCeEEe--eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccccc
Q 024544 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250 (266)
Q Consensus 173 qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC 250 (266)
.++.|.++|+|.|.+ |+.++ ...+++.+|+.| ..+.+++. -+|+++.....+. .++.|.+-.
T Consensus 73 ~i~~~~~~gad~It~H~Ea~~~---~~~~l~~Ik~~G--~k~GlAln--------P~Tp~~~i~~~l~---~vD~VlvMs 136 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESVQN---PSEILADIRAIG--AKAGLALN--------PATPLLPYRYLAL---QLDALMIMT 136 (210)
T ss_pred HHHHHHHhCCCEEEEcccCccC---HHHHHHHHHHcC--CcEEEEEC--------CCCCHHHHHHHHH---hcCEEEEEE
Confidence 357788899999865 75544 445677788866 55566653 2456655444433 244444444
Q ss_pred CC
Q 024544 251 TS 252 (266)
Q Consensus 251 ~~ 252 (266)
+.
T Consensus 137 V~ 138 (210)
T PRK08005 137 SE 138 (210)
T ss_pred ec
Confidence 43
No 359
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=25.82 E-value=5.3e+02 Score=23.72 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=73.9
Q ss_pred CCccccccccccCch---hHHHHhhhhhhcccc------EEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 024544 41 NDPLWSAKCLVSSPH---LVRKVHLDYLDAGAN------IIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREI 111 (266)
Q Consensus 41 ~~~lws~~~ll~~Pe---~V~~iH~~Yl~AGAd------iI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~ 111 (266)
+-|.|+-..--+.++ .+.++|....++.=. ....--+-+-...|.++|.+++++.+..+.|+++|++.+++
T Consensus 40 nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~e 119 (285)
T COG1831 40 NLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEE 119 (285)
T ss_pred ecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhc
Confidence 457787533223333 334455555444211 12222333444566777777778999999999999998754
Q ss_pred HHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhh-hcCCCeEE---e
Q 024544 112 YYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILA-NSGADLIA---F 187 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~-~~gvD~i~---~ 187 (266)
+ . |=.||=.|. +.|. .+.+....+..-...++. ...+|.-+ .
T Consensus 120 g--------------------~---avaiGEvGr---------PHyp--Vs~~v~~~~n~vl~~a~elA~dvdc~vqLHt 165 (285)
T COG1831 120 G--------------------K---AVAIGEVGR---------PHYP--VSEEVWEASNEVLEYAMELAKDVDCAVQLHT 165 (285)
T ss_pred c--------------------c---eeeeeccCC---------CCCC--CCHHHHHHHHHHHHHHHHHhhcCCCcEEEec
Confidence 2 1 113565553 5673 454444444443333332 22344433 2
Q ss_pred eccchhhhHHHHHHHHhhcCcccccce
Q 024544 188 ETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 188 ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
|... .++.+.+-+.+++.|. .|+-+
T Consensus 166 es~~-~~~~~~i~~~ak~~G~-~~~~V 190 (285)
T COG1831 166 ESLD-EETYEEIAEMAKEAGI-KPYRV 190 (285)
T ss_pred CCCC-hHHHHHHHHHHHHhCC-Cccee
Confidence 3332 3457778888888773 34443
No 360
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=3.2e+02 Score=23.32 Aligned_cols=68 Identities=9% Similarity=0.219 Sum_probs=42.6
Q ss_pred chhHHHHHHHhhhh-hHHhhhcCCCeEEeeccchhhhHHHHH-----HHHhhcCcccccceeeecCCCceeecCchHHHh
Q 024544 160 AVSLETLKEFHRRR-VLILANSGADLIAFETIPNKLEAKAYA-----ELLEEEGITIPAWFSFNSKDGINVVSGDSILEC 233 (266)
Q Consensus 160 ~~~~~e~~~~~~~q-i~~l~~~gvD~i~~ET~~~~~E~~a~~-----~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a 233 (266)
+-++=+.+++..+. +.+.- ..+|++++-.-.+++..+.+- .++++.+ +|++=+-.| .|+.++++
T Consensus 103 eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg--lPYfETSA~-------tg~Nv~ka 172 (219)
T KOG0081|consen 103 EQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYG--LPYFETSAC-------TGTNVEKA 172 (219)
T ss_pred hHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC--CCeeeeccc-------cCcCHHHH
Confidence 34555555554432 22232 468999998888877765443 2344444 999866554 58889988
Q ss_pred hhHH
Q 024544 234 ASIA 237 (266)
Q Consensus 234 ~~~~ 237 (266)
++.+
T Consensus 173 ve~L 176 (219)
T KOG0081|consen 173 VELL 176 (219)
T ss_pred HHHH
Confidence 8765
No 361
>PRK08444 hypothetical protein; Provisional
Probab=25.57 E-value=1e+02 Score=29.03 Aligned_cols=77 Identities=10% Similarity=-0.088 Sum_probs=51.0
Q ss_pred hhhhhHHhhhcCCCeE---Eeecc---------c---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhh
Q 024544 170 HRRRVLILANSGADLI---AFETI---------P---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i---~~ET~---------~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
.+++++.|.++|+|-+ ..|++ | ..++...+.+.+++.| +|+-.++-+ -.|++.++-+
T Consensus 150 ~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~G--i~~~sg~l~------G~gEt~edrv 221 (353)
T PRK08444 150 YEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKG--KMSNATMLF------GHIENREHRI 221 (353)
T ss_pred HHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcC--CCccceeEE------ecCCCHHHHH
Confidence 4577888999999977 35665 3 2245555666667765 666444433 4689999888
Q ss_pred hHHhh--hhhhhhcccccCCcc
Q 024544 235 SIADS--CEQVVAVGINCTSPR 254 (266)
Q Consensus 235 ~~~~~--~~~~~avGiNC~~p~ 254 (266)
..+.. ..+...+|||...|.
T Consensus 222 ~hl~~Lr~Lq~~t~gf~~fIp~ 243 (353)
T PRK08444 222 DHMLRLRDLQDKTGGFNAFIPL 243 (353)
T ss_pred HHHHHHHHhccccCCceEEEec
Confidence 76532 257788999986553
No 362
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=25.50 E-value=1.2e+02 Score=28.23 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=32.6
Q ss_pred hhhHHhhhcCCCeEEeeccchh-----hhHHHHHHHHhhcCcccccceeeecCCC
Q 024544 172 RRVLILANSGADLIAFETIPNK-----LEAKAYAELLEEEGITIPAWFSFNSKDG 221 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~-----~E~~a~~~a~~~~~~~~Pv~iSf~~~~~ 221 (266)
+.++.+++.|++.|++|.+..- .++..+++.+.+.+ +||+++-.|..+
T Consensus 224 ~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~G--i~VV~~Sr~~~G 276 (335)
T PRK09461 224 EVVRNFLRQPVKALILRSYGVGNAPQNPALLQELKEASERG--IVVVNLTQCMSG 276 (335)
T ss_pred HHHHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHCC--CEEEEeCCCCCC
Confidence 3466677789999999987543 34555555555544 899988777544
No 363
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=25.49 E-value=6.4e+02 Score=24.59 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=64.4
Q ss_pred cCchhHHHHhhhhhhccccEEEechh-hhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASY-QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy-~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
.+|-.|+...+-=.+-|..+++-.|= |.+..+-- .|+.+....+.+. ++|.+.- .+
T Consensus 22 ahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGY-TGmtP~dF~~~V~---~iA~~~g-------------------f~ 78 (421)
T PRK15052 22 AHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGY-TGMTPADFREFVY---GIADKVG-------------------FP 78 (421)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHH---HHHHHcC-------------------CC
Confidence 57777777666667778887777764 44444321 3676654443333 3444431 12
Q ss_pred ccceEEEEe-cccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeec-cc
Q 024544 131 SRPVLVAAS-VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFET-IP 191 (266)
Q Consensus 131 ~~~~~VaGs-iGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET-~~ 191 (266)
..+++..|. +||-. + ...+.+++-..-+..+++.+++|-+.|-+-+ |+
T Consensus 79 ~~~iiLggDHlGPn~------------W-q~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 79 RERIILGGDHLGPNC------------W-QQEPADAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred hhcEEeecCCCCCcc------------c-cCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 334555555 56621 2 2346777777788889999999999999884 44
No 364
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.41 E-value=6.4e+02 Score=24.54 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred eecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHH--HHHHHHhhcCc---ccccceeeecCC
Q 024544 146 YLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAK--AYAELLEEEGI---TIPAWFSFNSKD 220 (266)
Q Consensus 146 ~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~--a~~~a~~~~~~---~~Pv~iSf~~~~ 220 (266)
++.+|-.|-|.+-+ .+...+ +....+.|+|.-++|.+-..+|-+ .+++.+..... ..-.+.-+++++
T Consensus 251 fl~aG~GyGGsCfP-KD~~AL-------~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKp 322 (414)
T COG1004 251 FLNAGFGYGGSCFP-KDTKAL-------IANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKP 322 (414)
T ss_pred hCCCCCCCCCcCCc-HhHHHH-------HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecC
Confidence 55555566666543 233332 344456788999999888888766 34444544321 111233677765
Q ss_pred C
Q 024544 221 G 221 (266)
Q Consensus 221 ~ 221 (266)
+
T Consensus 323 n 323 (414)
T COG1004 323 N 323 (414)
T ss_pred C
Confidence 4
No 365
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=25.30 E-value=5.6e+02 Score=23.84 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=42.6
Q ss_pred HhhhhhHHhhhcCCCeEEee-ccc---------hhhhHHHHHHHHhhcC------cccccceeeecCCCceeecCchHHH
Q 024544 169 FHRRRVLILANSGADLIAFE-TIP---------NKLEAKAYAELLEEEG------ITIPAWFSFNSKDGINVVSGDSILE 232 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~~---------~~~E~~a~~~a~~~~~------~~~Pv~iSf~~~~~~~l~~G~~~~~ 232 (266)
-|.+.++.+.+ .+|+|-+. +.| +.+.+..+++++++.- ..+|+|+-++..-+ -..+.+
T Consensus 155 dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~-----~~~i~~ 228 (335)
T TIGR01036 155 DYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT-----ESDLED 228 (335)
T ss_pred HHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC-----HHHHHH
Confidence 35555666654 58988664 233 2334555666665431 12899998864311 123556
Q ss_pred hhhHHhhhhhhhh-cccccC
Q 024544 233 CASIADSCEQVVA-VGINCT 251 (266)
Q Consensus 233 a~~~~~~~~~~~a-vGiNC~ 251 (266)
.+..+.+ .++++ +.+|..
T Consensus 229 ia~~~~~-~GadGi~l~NT~ 247 (335)
T TIGR01036 229 IADSLVE-LGIDGVIATNTT 247 (335)
T ss_pred HHHHHHH-hCCcEEEEECCC
Confidence 6655554 46665 566765
No 366
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.16 E-value=4.6e+02 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEeeccc
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFETIP 191 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~ 191 (266)
..+.+.+..++.++...+.||- |.+|+++
T Consensus 123 ~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~ 151 (275)
T PRK09856 123 IWGRLAENLSELCEYAENIGMD-LILEPLT 151 (275)
T ss_pred HHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 4456666777777777778884 5779863
No 367
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.14 E-value=1.1e+02 Score=25.55 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.6
Q ss_pred hhhhhHHhhhcCCCeEEe
Q 024544 170 HRRRVLILANSGADLIAF 187 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ 187 (266)
+.+.++.+.++|+|.|-+
T Consensus 14 ~~~~~~~~~~~G~~~i~l 31 (211)
T cd00429 14 LGEELKRLEEAGADWIHI 31 (211)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 445788888999999987
No 368
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.12 E-value=2e+02 Score=26.67 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHhhhhhHHhhhcCCCeEEe------eccchhhhHHHHHHHHhhc--CcccccceeeecCCCceeecCchHHHhhh
Q 024544 164 ETLKEFHRRRVLILANSGADLIAF------ETIPNKLEAKAYAELLEEE--GITIPAWFSFNSKDGINVVSGDSILECAS 235 (266)
Q Consensus 164 ~e~~~~~~~qi~~l~~~gvD~i~~------ET~~~~~E~~a~~~a~~~~--~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~ 235 (266)
.++.+.+++.++.|.+ ||+.|=| -|-+...+...+.++++.. +.+.++.+..++... + + +.+.
T Consensus 157 ~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~~~~i~l~tyfg~~-----~--~-~~~~ 227 (326)
T PRK08575 157 EDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNVNIEKHLMTYFEIN-----N--L-KRLD 227 (326)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcCCCCEEEECCCCCc-----c--c-cHHH
Confidence 3445556666666666 9988732 2333333555555655543 123566665554321 1 1 2344
Q ss_pred HHhhhhhhhhcccccCC-cchhh
Q 024544 236 IADSCEQVVAVGINCTS-PRFIH 257 (266)
Q Consensus 236 ~~~~~~~~~avGiNC~~-p~~~~ 257 (266)
.+.+ .+++++|+-|+. ++.+.
T Consensus 228 ~l~~-~~vd~l~ld~~~~~~~l~ 249 (326)
T PRK08575 228 ILFS-LPVTYFGIDVIENLKKLG 249 (326)
T ss_pred HHhc-CCCcEEEEEecCChhHHH
Confidence 5554 468888888863 44433
No 369
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=25.06 E-value=1.5e+02 Score=27.61 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCeEEeeccchhhhHHH-HHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCcc
Q 024544 182 ADLIAFETIPNKLEAKA-YAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPR 254 (266)
Q Consensus 182 vD~i~~ET~~~~~E~~a-~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p~ 254 (266)
.|+++-|.+..-.=+.. ..+.++....+.|+++++.-. +-+.+.+++..+.+ .++++|-|||..|.
T Consensus 36 ~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdlN~gCP~ 102 (333)
T PRK11815 36 HALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLAED-WGYDEINLNVGCPS 102 (333)
T ss_pred CCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHHHh-cCCCEEEEcCCCCH
Confidence 37887776643211110 112233233357888887321 22344455555554 47889999998774
No 370
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=24.98 E-value=1.2e+02 Score=29.24 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=40.2
Q ss_pred hhHHHHHHHhhhhhHHhhhcCCCeEEeec-cchhhhHHHHHHHHhhcC--cccccceeee
Q 024544 161 VSLETLKEFHRRRVLILANSGADLIAFET-IPNKLEAKAYAELLEEEG--ITIPAWFSFN 217 (266)
Q Consensus 161 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET-~~~~~E~~a~~~a~~~~~--~~~Pv~iSf~ 217 (266)
++.+++++.+.+. ..-.+..+|++.+-. --+++|++.+.++++..+ ..+|+||+..
T Consensus 270 i~~~dl~~~~~~l-~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~ 328 (400)
T PF04412_consen 270 ITDADLEEVYEEL-NTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTS 328 (400)
T ss_pred eCHHHHHHHHHHh-ccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECC
Confidence 4667777766542 233456799999873 457889999999998654 5688998763
No 371
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=24.88 E-value=1.1e+02 Score=28.46 Aligned_cols=61 Identities=28% Similarity=0.311 Sum_probs=42.4
Q ss_pred ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhh----cccccC
Q 024544 189 TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVA----VGINCT 251 (266)
Q Consensus 189 T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~a----vGiNC~ 251 (266)
.+.++.++.+++++++++. .|..+.+-=.+.--...|.++.+|......+..+.+ |++|..
T Consensus 113 SyNN~lD~daA~~lv~ef~--~pa~vivKH~nPCGvA~~~~~~~Ay~kA~~~Dp~SaFGGIva~Nr~ 177 (311)
T smart00798 113 SYNNILDADAALELVKEFD--EPACVIVKHANPCGVAVGDTLAEAYRKAYAADPVSAFGGIIAFNRP 177 (311)
T ss_pred CCcchhchHHHHHHHHhcC--CCcEEEEecCCcceeecCCCHHHHHHHHHhcCCccccCCEEEECCc
Confidence 6778999999999999975 676655532222235678899999887655444443 667875
No 372
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.85 E-value=1.5e+02 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.023 Sum_probs=26.5
Q ss_pred hhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccce
Q 024544 172 RRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
.+++.+...+||.|++-.. +.......++.+++.+ +|++.
T Consensus 47 ~~i~~l~~~~vdgiIi~~~-~~~~~~~~l~~~~~~g--iPvV~ 86 (302)
T TIGR02637 47 EVVNSLIAQKVDAIAISAN-DPDALVPALKKAMKRG--IKVVT 86 (302)
T ss_pred HHHHHHHHcCCCEEEEeCC-ChHHHHHHHHHHHHCC--CEEEE
Confidence 4577788889999999654 3344445556566644 78764
No 373
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=24.81 E-value=2.3e+02 Score=25.77 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=40.2
Q ss_pred hhHHhhhcCCCeEEee-cc--------------chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH
Q 024544 173 RVLILANSGADLIAFE-TI--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA 237 (266)
Q Consensus 173 qi~~l~~~gvD~i~~E-T~--------------~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~ 237 (266)
.++.+.+.|+|.|=+- .. .+.+.+..+++++++.- ++|+++-++.+ -+.+.+.+..+
T Consensus 118 ~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~-------~~~~~~~a~~~ 189 (299)
T cd02940 118 LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPN-------ITDIREIARAA 189 (299)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCC-------chhHHHHHHHH
Confidence 4455555678877543 12 23455777788887653 58999887531 12355565555
Q ss_pred hhhhhhhhc-ccccC
Q 024544 238 DSCEQVVAV-GINCT 251 (266)
Q Consensus 238 ~~~~~~~av-GiNC~ 251 (266)
.+ .++++| .+|..
T Consensus 190 ~~-~Gadgi~~~Nt~ 203 (299)
T cd02940 190 KE-GGADGVSAINTV 203 (299)
T ss_pred HH-cCCCEEEEeccc
Confidence 54 466654 34543
No 374
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=24.79 E-value=2.1e+02 Score=27.40 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred hHHhhhcCCCeEEee-cc--------------chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 174 VLILANSGADLIAFE-TI--------------PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 174 i~~l~~~gvD~i~~E-T~--------------~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.+.|+|+|=+- .. .+.+.+..+++++++.. ++|+++-++. +-+++.+.+..+.
T Consensus 119 a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-------~~~~~~~~a~~~~ 190 (420)
T PRK08318 119 APLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-------NITDIREPARAAK 190 (420)
T ss_pred HHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC-------CcccHHHHHHHHH
Confidence 344455678887553 11 34456677788887753 6899988863 1223556655555
Q ss_pred hhhhhhhcc-cccC
Q 024544 239 SCEQVVAVG-INCT 251 (266)
Q Consensus 239 ~~~~~~avG-iNC~ 251 (266)
+ .++++|- +|-.
T Consensus 191 ~-~Gadgi~~~Nt~ 203 (420)
T PRK08318 191 R-GGADAVSLINTI 203 (420)
T ss_pred H-CCCCEEEEeccc
Confidence 4 4666533 4554
No 375
>PLN02363 phosphoribosylanthranilate isomerase
Probab=24.55 E-value=2.2e+02 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred hHHhhhcCCCeEEeeccch------hhhHHHHHHHHh
Q 024544 174 VLILANSGADLIAFETIPN------KLEAKAYAELLE 204 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~------~~E~~a~~~a~~ 204 (266)
++...+.|||++-|-..+. .++++.+++.++
T Consensus 60 a~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~ 96 (256)
T PLN02363 60 AAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAR 96 (256)
T ss_pred HHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhcc
Confidence 4456678999998764342 556666666654
No 376
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=24.53 E-value=2.4e+02 Score=24.54 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=41.8
Q ss_pred hhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC--Ccch
Q 024544 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRF 255 (266)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~--~p~~ 255 (266)
...+||++=+|-.......+.+++.+++. +..+++|+.-. .++.+-..+.+.+..+.. .+++.+=+-+. ++..
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f--~~tp~~~~l~~~~~~~~~-~gaDivKia~~a~~~~D 163 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKKG--GTKIIMSYHDF--QKTPSWEEIVERLEKALS-YGADIVKIAVMANSKED 163 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHHC--CCEEEEeccCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEEeccCCHHH
Confidence 55789999999665555555666655553 47899998522 122222223333333333 34555555553 3444
Q ss_pred hhhhh
Q 024544 256 IHGLI 260 (266)
Q Consensus 256 ~~~~l 260 (266)
...++
T Consensus 164 ~~~ll 168 (228)
T TIGR01093 164 VLTLL 168 (228)
T ss_pred HHHHH
Confidence 44333
No 377
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=24.45 E-value=97 Score=28.68 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=35.3
Q ss_pred hcCCCeEEeeccchhhhHH---HHHHHHhhcCcccccceeeecCCCceeecCchHH---HhhhHHhhhhhhhhcccccCC
Q 024544 179 NSGADLIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSIL---ECASIADSCEQVVAVGINCTS 252 (266)
Q Consensus 179 ~~gvD~i~~ET~~~~~E~~---a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~---~a~~~~~~~~~~~avGiNC~~ 252 (266)
+.|+|+.+-|.++.-.... .....+.......|+.+++ -|.+++ +++..+.. .++++|-+||..
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl---------~g~~~~~~~~aa~~~~~-~g~d~IdlN~gC 100 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI---------AGSDPKEMADAARINVE-SGAQIIDINMGC 100 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE---------eCCCHHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence 3578998888877643211 0111111111124555555 344444 44544443 578899999987
Q ss_pred cc
Q 024544 253 PR 254 (266)
Q Consensus 253 p~ 254 (266)
|.
T Consensus 101 P~ 102 (321)
T PRK10415 101 PA 102 (321)
T ss_pred CH
Confidence 74
No 378
>PF05369 MtmB: Monomethylamine methyltransferase MtmB; InterPro: IPR008031 Monomethylamine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrrolysine, encoded by the termination codon UAG []. The structure of the enzyme reveals a homohexamer comprised of individual subunits with a TIM barrel fold. MtmB initiates the metabolism of monomethylamine by catalysing the transfer of the methyl group from monomethylamine to the corrinoid cofactor of MtmC.; GO: 0008168 methyltransferase activity
Probab=24.45 E-value=2e+02 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=13.6
Q ss_pred eeccchhhhHHHHHHHHhhcC
Q 024544 187 FETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 187 ~ET~~~~~E~~a~~~a~~~~~ 207 (266)
+|.+..+.|++.+-++++..+
T Consensus 174 ~Em~A~~~ea~lvk~a~r~aG 194 (457)
T PF05369_consen 174 WEMFAALEEARLVKDACRRAG 194 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 455666777777767776654
No 379
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=24.43 E-value=1.3e+02 Score=25.90 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=39.6
Q ss_pred EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHH---hhhhhhhhccccc
Q 024544 186 AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIA---DSCEQVVAVGINC 250 (266)
Q Consensus 186 ~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~---~~~~~~~avGiNC 250 (266)
+.-|+.++.+++.+-++.++.+...+|++-+..-.. .-+-|-+..++...+ ....++...|+-|
T Consensus 93 ~~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~~-~~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~s 159 (222)
T cd00635 93 LIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGE-ESKSGVAPEELEELLEEIAALPNLRIRGLMT 159 (222)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCCCHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 445888999998888877765545667777653210 145687776655443 3333456677765
No 380
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=24.27 E-value=4.9e+02 Score=24.60 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHHHhhhhhHHhhhcCC--CeEEeec-----cchhhhHHHHHHHHhhcCcccccceee
Q 024544 165 TLKEFHRRRVLILANSGA--DLIAFET-----IPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 165 e~~~~~~~qi~~l~~~gv--D~i~~ET-----~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
.-++++...|+.|.+.|+ |.|-+-. .|+.+..+++++-.-+.+ +|++||=
T Consensus 201 ~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~G--l~i~VTE 257 (345)
T COG3693 201 AKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLG--LPIYVTE 257 (345)
T ss_pred HHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcC--CCceEEE
Confidence 345677779999998775 8886542 366667777766554444 8888763
No 381
>PLN02235 ATP citrate (pro-S)-lyase
Probab=24.14 E-value=2.5e+02 Score=27.42 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=49.4
Q ss_pred CCCchhHHHHHHHhhhhhHHh-hhcCCCeEE---eeccchhhhHH----HHHHHHhhcC-----cccccceeeecCCCce
Q 024544 157 YGDAVSLETLKEFHRRRVLIL-ANSGADLIA---FETIPNKLEAK----AYAELLEEEG-----ITIPAWFSFNSKDGIN 223 (266)
Q Consensus 157 y~~~~~~~e~~~~~~~qi~~l-~~~gvD~i~---~ET~~~~~E~~----a~~~a~~~~~-----~~~Pv~iSf~~~~~~~ 223 (266)
++-..+.+..+++++-.+..+ .+.+|+.++ |--|....++. ++++++++.+ .++|+||.+
T Consensus 304 vGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl------- 376 (423)
T PLN02235 304 YSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRR------- 376 (423)
T ss_pred cCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEEC-------
Confidence 333357888888876544322 356777654 44555555554 8899998864 358988866
Q ss_pred eecCchHHHhhhHHhh
Q 024544 224 VVSGDSILECASIADS 239 (266)
Q Consensus 224 l~~G~~~~~a~~~~~~ 239 (266)
.|+..++..+.++.
T Consensus 377 --~GtN~eeG~~il~e 390 (423)
T PLN02235 377 --GGPNYQKGLAKMRA 390 (423)
T ss_pred --CCCCHHHHHHHHHH
Confidence 68888888887764
No 382
>PRK10206 putative oxidoreductase; Provisional
Probab=24.13 E-value=1.4e+02 Score=27.64 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=31.2
Q ss_pred HhhhhhHHhhhcCCCeEEee--ccchhhhHHHHHHHHhhcCcccccceee
Q 024544 169 FHRRRVLILANSGADLIAFE--TIPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E--T~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
.|.+++...+++|..++. | -..+++|++.+++++++.+ +++++.+
T Consensus 76 ~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~--~~l~v~~ 122 (344)
T PRK10206 76 SHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKG--LTVTPYQ 122 (344)
T ss_pred HHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhC--CEEEEEE
Confidence 577778888888877665 7 3346788888888887754 4555444
No 383
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.10 E-value=1.2e+02 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=25.1
Q ss_pred hhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccce
Q 024544 178 ANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 178 ~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
....+|+++++.-..-.....+++.++..+++.|+++
T Consensus 40 ~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~ 76 (112)
T PF00072_consen 40 KKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIV 76 (112)
T ss_dssp HHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEE
T ss_pred cccCceEEEEEeeeccccccccccccccccccccEEE
Confidence 3455899999964444666777777777665566653
No 384
>PRK07360 FO synthase subunit 2; Reviewed
Probab=24.08 E-value=1.5e+02 Score=27.99 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=46.2
Q ss_pred hhhhHHhhhcCCCeEEeecc-------------c---hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhh
Q 024544 171 RRRVLILANSGADLIAFETI-------------P---NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~-------------~---~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
+++++.|.++|+|.+. ||- | +.++-..+++.+++.| +++-..+-+ -.|++.++.+
T Consensus 163 ~e~l~~LkeAGld~~~-~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~G--l~~~sg~i~------G~gEt~edrv 233 (371)
T PRK07360 163 EEVLKALKDAGLDSMP-GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLG--LPTTSTMMY------GHVETPEHRI 233 (371)
T ss_pred HHHHHHHHHcCCCcCC-CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CCceeeEEe------eCCCCHHHHH
Confidence 5678889999999995 653 3 3356666777777766 666544433 2488888887
Q ss_pred hHHhh--hhhhhhccccc
Q 024544 235 SIADS--CEQVVAVGINC 250 (266)
Q Consensus 235 ~~~~~--~~~~~avGiNC 250 (266)
..+.. ..++.-.||..
T Consensus 234 ~~l~~lr~l~~~~~g~~~ 251 (371)
T PRK07360 234 DHLLILREIQQETGGITE 251 (371)
T ss_pred HHHHHHHHhchhhCCeeE
Confidence 76532 24555555544
No 385
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=24.02 E-value=6e+02 Score=23.78 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=77.9
Q ss_pred hHHHHhh----hhhhccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccc
Q 024544 56 LVRKVHL----DYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISS 131 (266)
Q Consensus 56 ~V~~iH~----~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (266)
.+++.|+ .|+++|.|+|.-=|+-.. .++ ++++++-++. ..+
T Consensus 145 el~~~~k~qle~~~~~gvD~L~fETip~~-----------~EA----~a~l~~l~~~--------------------~~~ 189 (317)
T KOG1579|consen 145 ELYDFFKQQLEVFLEAGVDLLAFETIPNV-----------AEA----KAALELLQEL--------------------GPS 189 (317)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeecCCH-----------HHH----HHHHHHHHhc--------------------CCC
Confidence 4666665 477889998887776322 111 2333443332 146
Q ss_pred cceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcC--CCeEEeeccchhhhHHHHHHHHhhcCcc
Q 024544 132 RPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG--ADLIAFETIPNKLEAKAYAELLEEEGIT 209 (266)
Q Consensus 132 ~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~g--vD~i~~ET~~~~~E~~a~~~a~~~~~~~ 209 (266)
.++||.+++++-|. +.+| .+.+++.. +.+.+ +=.|-+-..+-......+.+.. .....
T Consensus 190 ~p~~is~t~~d~g~-l~~G----------~t~e~~~~--------~~~~~~~~~~IGvNC~~~~~~~~~~~~L~-~~~~~ 249 (317)
T KOG1579|consen 190 KPFWISFTIKDEGR-LRSG----------ETGEEAAQ--------LLKDGINLLGIGVNCVSPNFVEPLLKELM-AKLTK 249 (317)
T ss_pred CcEEEEEEecCCCc-ccCC----------CcHHHHHH--------HhccCCceEEEEeccCCchhccHHHHHHh-hccCC
Confidence 79999999999554 3322 35555444 33344 3444444444444445555555 22234
Q ss_pred cccceeeecCCCce---------eec--C-chHHHhhhHHhhhhhhhhcccccC-Ccchhhhhheeee
Q 024544 210 IPAWFSFNSKDGIN---------VVS--G-DSILECASIADSCEQVVAVGINCT-SPRFIHGLILSVR 264 (266)
Q Consensus 210 ~Pv~iSf~~~~~~~---------l~~--G-~~~~~a~~~~~~~~~~~avGiNC~-~p~~~~~~l~~l~ 264 (266)
+|+++- ++.|. ... | .++...+..... .++-.||==|- .|.++..+=+.++
T Consensus 250 ~~llvY---PNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~-lGv~iIGGCCrt~P~~I~aI~e~v~ 313 (317)
T KOG1579|consen 250 IPLLVY---PNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAID-LGVRIIGGCCRTTPKHIRAIAEAVK 313 (317)
T ss_pred CeEEEe---cCCCCCCccccCcccCCCcccchHHHHHHHHHh-cccceeCcccCCChHHHHHHHHHhh
Confidence 666542 12221 111 1 112223333333 46677887774 6988877665544
No 386
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.90 E-value=81 Score=27.27 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=25.1
Q ss_pred hhHHhhhcCCCeEEe--eccchhhhHHHHHHHHhhcCcccccceee
Q 024544 173 RVLILANSGADLIAF--ETIPNKLEAKAYAELLEEEGITIPAWFSF 216 (266)
Q Consensus 173 qi~~l~~~gvD~i~~--ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf 216 (266)
.++.|.++|+|.+.| |+..++ ..+++.+|+.+ +.+.+++
T Consensus 72 ~i~~~~~~g~~~i~~H~E~~~~~---~~~i~~ik~~g--~k~Gial 112 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAEATEDP---KETIKYIKEAG--IKAGIAL 112 (201)
T ss_dssp HHHHHHHHT-SEEEEEGGGTTTH---HHHHHHHHHTT--SEEEEEE
T ss_pred HHHHHHhcCCCEEEEcccchhCH---HHHHHHHHHhC--CCEEEEE
Confidence 356678899998865 655544 45667777765 5555555
No 387
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.86 E-value=1.3e+02 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=31.5
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccce
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
-|..++..+.++++|.|++=+ +..++..+++.+++.+...++++
T Consensus 187 d~~~~i~~l~~~~~d~v~~~~--~~~~~~~~~~~~~~~G~~~~~~~ 230 (347)
T cd06340 187 DLTSEVLKLKAANPDAILPAS--YTNDAILLVRTMKEQRVEPKAVY 230 (347)
T ss_pred chHHHHHHHHhcCCCEEEEcc--cchhHHHHHHHHHHcCCCCcEEE
Confidence 466788888889999998743 44567778888888764444443
No 388
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=23.79 E-value=2.4e+02 Score=24.97 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=43.2
Q ss_pred cCCCeEEeeccc--hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccC--Ccch
Q 024544 180 SGADLIAFETIP--NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT--SPRF 255 (266)
Q Consensus 180 ~gvD~i~~ET~~--~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~--~p~~ 255 (266)
.+||++=+|... ..+.++.++..+++.+ ..+++|.- +-..+++=..+.+.+..+.. .+++.+=+-|. ++..
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~--~~vI~S~H--~F~~TP~~~~l~~~~~~m~~-~gaDi~KiAv~~~~~~D 170 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQYN--KEVVISHH--NFESTPPLDELKFIFFKMQK-FNPEYVKLAVMPHNKND 170 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHcC--CEEEEecC--CCCCCCCHHHHHHHHHHHHH-hCCCEEEEEecCCCHHH
Confidence 468999999653 4555666666666644 78998884 22222222233344444433 35566555554 4555
Q ss_pred hhhhhe
Q 024544 256 IHGLIL 261 (266)
Q Consensus 256 ~~~~l~ 261 (266)
+..+++
T Consensus 171 vl~Ll~ 176 (238)
T PRK13575 171 VLNLLQ 176 (238)
T ss_pred HHHHHH
Confidence 555543
No 389
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.74 E-value=1.3e+02 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.7
Q ss_pred cCchhHHHHhhhhhhccccEEEechhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQ 78 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~ 78 (266)
.+++...++-+.-+++|-.+|+- ||+
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEi-t~~ 47 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEV-TYT 47 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE-ECC
Confidence 57888888889999999998864 443
No 390
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=23.71 E-value=4.8e+02 Score=24.48 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=71.1
Q ss_pred hhHHHHhhhhhhccccEEEechhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccc
Q 024544 55 HLVRKVHLDYLDAGANIIITASYQATIQGFEAK-GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRP 133 (266)
Q Consensus 55 e~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~-g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (266)
+.+.+.-+.-++.|-.-+.. |+..+...+.. |-+...-..++.+|++..++.. ..
T Consensus 54 d~l~~~v~~~~~~Gi~~v~l--Fgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~----------------------p~ 109 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVAL--FPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAF----------------------PE 109 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEE--ecCCCcccCCcccccccCCCChHHHHHHHHHHhC----------------------CC
Confidence 44555557778888774443 44322222211 1110011247788888877642 23
Q ss_pred eEEEEe--cccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcC
Q 024544 134 VLVAAS--VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 134 ~~VaGs--iGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (266)
++|... +.||-+.=++|-- .+ ..++-++..+...+|.-.++++|+|++.==-|.+- .+.+|.+++.+.+
T Consensus 110 l~vi~DVclc~YT~hGHcGil-~~---~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g 180 (320)
T cd04823 110 LGIITDVALDPYTSHGHDGIV-RD---GGILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEG 180 (320)
T ss_pred cEEEEeeeccCCCCCCcceec-cC---CcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCC
Confidence 555554 4454322111110 00 12556677777888888999999999997777765 5678888888765
No 391
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.65 E-value=1.9e+02 Score=25.94 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.1
Q ss_pred hhhHHhhhcCCCeEEe
Q 024544 172 RRVLILANSGADLIAF 187 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ 187 (266)
+.+..|.++|||+|=+
T Consensus 30 ~~~~~l~~~Gad~iEl 45 (258)
T PRK13111 30 EIIKALVEAGADIIEL 45 (258)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 3567788899999843
No 392
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=23.59 E-value=1.5e+02 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=20.0
Q ss_pred HhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 176 ILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 176 ~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
.+.+.|+|.+++-|...- ....+.++++..+ ..+++|+.++
T Consensus 91 ~~~~~Ga~~vilg~~~l~-~~~~l~ei~~~~~--~~i~vsid~k 131 (233)
T PRK00748 91 ALLDAGVSRVIIGTAAVK-NPELVKEACKKFP--GKIVVGLDAR 131 (233)
T ss_pred HHHHcCCCEEEECchHHh-CHHHHHHHHHHhC--CCceeeeecc
Confidence 344468888877654321 1122333444432 2355666654
No 393
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.49 E-value=1.9e+02 Score=25.86 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.4
Q ss_pred ccCchhHHHHhhhhhhccccEEEechh
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITASY 77 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnTy 77 (266)
+..++.|++.-.-|-+.|..+-.-.||
T Consensus 37 l~~~~~l~eki~la~~~~V~v~~GGtl 63 (237)
T TIGR03849 37 LIDRDIVKEKIEMYKDYGIKVYPGGTL 63 (237)
T ss_pred eccHHHHHHHHHHHHHcCCeEeCCccH
Confidence 455577888777777888777766665
No 394
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=23.43 E-value=2.2e+02 Score=25.20 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred hHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecC-CCc--e------eecCchHHHhhhHHhh
Q 024544 174 VLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK-DGI--N------VVSGDSILECASIADS 239 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~-~~~--~------l~~G~~~~~a~~~~~~ 239 (266)
++.+.+.|+|-+.+-|..- .+-..+-+++++.+ +. +++|+..+ ++. . ..++.++.+.+..+..
T Consensus 89 ~~~~l~~Ga~~vvigT~a~-~~p~~~~~~~~~~g-~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~ 160 (243)
T TIGR01919 89 LRAALTGGRARVNGGTAAL-ENPWWAAAVIRYGG-DI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS 160 (243)
T ss_pred HHHHHHcCCCEEEECchhh-CCHHHHHHHHHHcc-cc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh
Confidence 4445568999998877532 22233334455544 23 77888775 321 2 2245566666666654
No 395
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.27 E-value=2.1e+02 Score=25.33 Aligned_cols=65 Identities=17% Similarity=0.065 Sum_probs=35.8
Q ss_pred hhhHHhhhcCCCeEEeeccchhh---hHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544 172 RRVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI 248 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~---E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi 248 (266)
+.++.+.++|+|.|.+..+..-. ....+-+ +++.-.++|++-+-. . .+.+++.+.+. .++++|.+
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~-i~~~~~~ipIIgNGg------I---~s~eda~e~l~--~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKI-LSEEFNDKIIIGNNS------I---DDIESAKEMLK--AGADFVSV 219 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHH-HHHhcCCCcEEEECC------c---CCHHHHHHHHH--hCCCeEEE
Confidence 34567889999999998765421 2233333 333211367664322 2 34566666665 36666554
No 396
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=23.27 E-value=1e+02 Score=29.01 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCch------HHHhhhHHhhhhhhhhccc----cc
Q 024544 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS------ILECASIADSCEQVVAVGI----NC 250 (266)
Q Consensus 181 gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~------~~~a~~~~~~~~~~~avGi----NC 250 (266)
++|++ |++++.-++.+-+++.+.+.--.|+..+...+ ++.|.. +.+.+..+.++.++..+|+ +|
T Consensus 93 ~~Dvs---~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D---lreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~C 166 (353)
T COG3457 93 KVDVS---TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD---LREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPC 166 (353)
T ss_pred hcCeE---EEecHHHHHHHHHHHHHhCcceeEEEEEEccc---ccCcchhhHHHHHHHHHHHHhcCCCceEEeeeccccc
Confidence 68855 56677788888888877764445666665543 677765 6677777777777777776 78
Q ss_pred CC-----cchhhhhh
Q 024544 251 TS-----PRFIHGLI 260 (266)
Q Consensus 251 ~~-----p~~~~~~l 260 (266)
-+ |+.+..++
T Consensus 167 fg~v~PTp~n~~~ll 181 (353)
T COG3457 167 FGDVLPTPENLESLL 181 (353)
T ss_pred ccCcCCCcccHHHHH
Confidence 42 34555544
No 397
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.24 E-value=3.5e+02 Score=24.28 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=82.4
Q ss_pred CeEEeecchh----------hhHhhh-CCCCCCccccccccccCchhHHHHhhhhhhcccc--EEEechhhhhhhhhhcc
Q 024544 21 GYSVVDGGFA----------TELERH-GADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGAN--IIITASYQATIQGFEAK 87 (266)
Q Consensus 21 ~~lllDGg~g----------T~L~~~-g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAd--iI~TnTy~a~~~~l~~~ 87 (266)
-+.|.||+.| ..|++. |++.= +..+.. -.++..++.....+-.+|.+ ++.|--.......-...
T Consensus 31 ~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i-~Hlt~r--~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~ 107 (272)
T TIGR00676 31 FVSVTYGAGGSTRDRTVRIVRRIKKETGIPTV-PHLTCI--GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPG 107 (272)
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHHhcCCCee-EEeeec--CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCC
Confidence 3778999886 344433 55421 222221 14667888888899999988 44555543221100001
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHH
Q 024544 88 GFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLK 167 (266)
Q Consensus 88 g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~ 167 (266)
.++ .|++|-+-+++.+ ....|++..=|.|.. +- .+.++
T Consensus 108 ~f~---------~a~~Li~~i~~~~-------------------~~f~ig~a~~Peghp---------~~---~~~~~-- 145 (272)
T TIGR00676 108 GFN---------YASELVEFIRNEF-------------------GDFDIGVAAYPEKHP---------EA---PNLEE-- 145 (272)
T ss_pred CCC---------CHHHHHHHHHHhc-------------------CCeeEEEEeCCCCCC---------CC---CCHHH--
Confidence 122 2444444433221 235666666666531 10 12221
Q ss_pred HHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 168 EFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
..++++.=.++|+|+|+==-+.+.+-+...++.+++.+.++|++..+..-
T Consensus 146 --~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~ 195 (272)
T TIGR00676 146 --DIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPI 195 (272)
T ss_pred --HHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCCc
Confidence 11123344568999887555666666667777777777778998888643
No 398
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=23.22 E-value=1.8e+02 Score=27.44 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=34.4
Q ss_pred ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCch-HHHhhh---HHhhhhhhhhcccccC
Q 024544 189 TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDS-ILECAS---IADSCEQVVAVGINCT 251 (266)
Q Consensus 189 T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~-~~~a~~---~~~~~~~~~avGiNC~ 251 (266)
.+.+.++++.+-++.++.+..++|+|-+.. +..+.|-. .+++.. .+....++...||-|-
T Consensus 104 ~vds~~~l~~L~~~a~~~g~~~~v~i~vn~---g~~R~G~~~~~~~~~l~~~i~~~~~l~l~Gi~~~ 167 (382)
T cd06818 104 LVDSVDNVRALAAFFAALERPLNVLIELGV---PGGRTGVRTEAEALALADAIAASPALRLAGVEGY 167 (382)
T ss_pred EECCHHHHHHHHHHHHhcCCceEEEEEECC---CCCCCCCCCHHHHHHHHHHHHcCCCceEeEEEee
Confidence 555777777777766665533444444432 34456753 344333 3343456778999995
No 399
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=23.08 E-value=1e+02 Score=28.53 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=19.6
Q ss_pred CCCCCCccccccccc-cCchhHHHHhhhhhhccccEEEech
Q 024544 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 37 g~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
|+.+..|.+.+..-+ ...+.+++ +.++|+--|.|-|
T Consensus 9 Gl~l~nPv~~asg~~~~~~~~~~~----~~~~g~Gavv~kt 45 (334)
T PRK07565 9 GLTLRNPLVASASPLSESVDNVKR----LEDAGAGAVVLKS 45 (334)
T ss_pred CEecCCCCEecCcCCCCCHHHHHH----HHHCCCeEEEEee
Confidence 556666665443333 44455444 5566666566655
No 400
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.02 E-value=3.3e+02 Score=25.97 Aligned_cols=120 Identities=26% Similarity=0.340 Sum_probs=70.2
Q ss_pred hHHHHhhhhh------hccccEEEechhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCc
Q 024544 56 LVRKVHLDYL------DAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRI 129 (266)
Q Consensus 56 ~V~~iH~~Yl------~AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~ 129 (266)
+|-.||.+|- ++|+|-|.- ||..+ |-..++++++ |+.|++
T Consensus 83 lvADIHFd~~lAl~a~~~G~~~iRI-----NPGNi---g~~~~~v~~v----v~~ak~---------------------- 128 (360)
T PRK00366 83 LVADIHFDYRLALAAAEAGADALRI-----NPGNI---GKRDERVREV----VEAAKD---------------------- 128 (360)
T ss_pred EEEecCCCHHHHHHHHHhCCCEEEE-----CCCCC---CchHHHHHHH----HHHHHH----------------------
Confidence 5667888885 459998844 45444 2112334443 333333
Q ss_pred cccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCC-eEEeeccchhhhHHHHHHHHhhcCc
Q 024544 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGAD-LIAFETIPNKLEAKAYAELLEEEGI 208 (266)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD-~i~~ET~~~~~E~~a~~~a~~~~~~ 208 (266)
.+.++.|.---|+.-..+- -.|++ .+.+.+.+.-.++++.|.+.|-| +++===-++..+...+-+.+.+..
T Consensus 129 ~~ipIRIGvN~GSL~~~~~------~~yg~-~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~~- 200 (360)
T PRK00366 129 YGIPIRIGVNAGSLEKDLL------EKYGE-PTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRC- 200 (360)
T ss_pred CCCCEEEecCCccChHHHH------HHcCC-CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhcC-
Confidence 2456666543343322221 13432 46678888888889999888874 444345677777777777776543
Q ss_pred ccccceeee
Q 024544 209 TIPAWFSFN 217 (266)
Q Consensus 209 ~~Pv~iSf~ 217 (266)
+-|.=+-+|
T Consensus 201 dyPLHlGvT 209 (360)
T PRK00366 201 DYPLHLGVT 209 (360)
T ss_pred CCCceeccc
Confidence 566665554
No 401
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.02 E-value=71 Score=29.31 Aligned_cols=28 Identities=14% Similarity=-0.062 Sum_probs=21.6
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhH
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEA 196 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~ 196 (266)
+-...+++-+..|+|.|++||=|+.+++
T Consensus 218 ~v~~larAAvA~GaDGl~iEvHpdP~~A 245 (281)
T PRK12457 218 QVLDLARAGMAVGLAGLFLEAHPDPDRA 245 (281)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 3444566667789999999999998764
No 402
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=22.99 E-value=1.6e+02 Score=29.67 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHhhhhhHHhhh---cCCCeEEeeccchhhhHHHHHHHHhh
Q 024544 167 KEFHRRRVLILAN---SGADLIAFETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 167 ~~~~~~qi~~l~~---~gvD~i~~ET~~~~~E~~a~~~a~~~ 205 (266)
.+.|+.|++++.. .|..-|+|=.+.+.+|++.+.++++.
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 4678888888754 58999999999999999999988774
No 403
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.95 E-value=2.9e+02 Score=24.81 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred HhhhhhHHhhhcCCCeEEee-ccch--hhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TIPN--KLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~~~--~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|.|.+= |+.. +.++..+++.+++. .|+-+.|-+.++ .|..+..++..+.
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~---~~~~l~~H~Hnd----~GlA~aN~laA~~ 215 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKE---VGLPIHLHTHDT----SGLAVATYLAAAE 215 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---CCCeEEEEecCC----CChHHHHHHHHHH
Confidence 45556677888899988664 5443 55777888888863 345677877766 4666666655554
No 404
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=22.94 E-value=6.3e+02 Score=23.61 Aligned_cols=37 Identities=24% Similarity=0.118 Sum_probs=29.6
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcC
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~ 207 (266)
|+..+....+.|+.++. .++-+++.++.+.+.+.+.|
T Consensus 164 ~~~i~~lA~~y~~~Vva-~s~~Dln~ak~L~~~l~~~G 200 (319)
T PRK04452 164 YKKIAAAAMAYGHAVIA-WSPLDINLAKQLNILLTELG 200 (319)
T ss_pred HHHHHHHHHHhCCeEEE-EcHHHHHHHHHHHHHHHHcC
Confidence 77777777888887766 58888888888888888766
No 405
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.93 E-value=2.8e+02 Score=24.89 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=40.8
Q ss_pred HhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 169 FHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
++.+.++.+.+.|+|.|.+- |+ ..+.++...++.+++.- +..+-+.|-+.++ .|..+..++..+.
T Consensus 139 ~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~~~i~~H~Hn~----~Gla~AN~laA~~ 206 (266)
T cd07944 139 ELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL-DKDIKLGFHAHNN----LQLALANTLEAIE 206 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeCCC----ccHHHHHHHHHHH
Confidence 34445666777899988664 54 35677888888887642 1116678887776 3555555554443
No 406
>PLN02899 alpha-galactosidase
Probab=22.88 E-value=1.4e+02 Score=30.49 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=40.9
Q ss_pred HHHHHHhhhhhHHhhhcCCCeEEeecc----chhhhHHHHHHHHhhcCcccccceeee
Q 024544 164 ETLKEFHRRRVLILANSGADLIAFETI----PNKLEAKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 164 ~e~~~~~~~qi~~l~~~gvD~i~~ET~----~~~~E~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
...++||+..++.|++=|||+|=.--+ .+..|.+++-+|+++++ -|++.|++
T Consensus 191 ~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~aTG--RPIvySLs 246 (633)
T PLN02899 191 GAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKELD--RPIVYSLS 246 (633)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHHhC--CCeEEEec
Confidence 345678887788899999999977644 24668888889999976 78888886
No 407
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=22.59 E-value=1.1e+02 Score=26.61 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred hhHHhhhcCCCeE-----EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCc
Q 024544 173 RVLILANSGADLI-----AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGI 222 (266)
Q Consensus 173 qi~~l~~~gvD~i-----~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~ 222 (266)
+++.+ ..|+|++ .++...+...+..+.+.++..-.++|+++++....+|
T Consensus 17 ~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eG 70 (228)
T TIGR01093 17 TAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEG 70 (228)
T ss_pred HHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhC
Confidence 34444 5677776 2355444444444444444321358999999776544
No 408
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=22.58 E-value=5.9e+02 Score=23.20 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=16.4
Q ss_pred hHHhhhcCCCeEEeeccchhhhHH
Q 024544 174 VLILANSGADLIAFETIPNKLEAK 197 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~~E~~ 197 (266)
++.+.+.|+|.+-+....++.|++
T Consensus 244 ~~~~~~~~~~~~s~d~~~dl~e~k 267 (335)
T cd00717 244 LEDLAQLGADVVGLDWRVDLDEAR 267 (335)
T ss_pred HHHHHhcCCCEEEeCCCCCHHHHH
Confidence 455666788888777666666643
No 409
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=22.48 E-value=1.1e+02 Score=27.52 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=30.4
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCc--ccccce
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGI--TIPAWF 214 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~--~~Pv~i 214 (266)
-|..++..+.++++|+|++ ..+ -.++..+++.+++.+. +.|++-
T Consensus 174 d~~~~i~~l~~~~pd~v~~-~~~-~~~~~~~~~~~~~~G~~~~~~~~~ 219 (333)
T cd06359 174 DFSAELAQIRAAKPDAVFV-FLP-GGMGVNFVKQYRQAGLKKDIPLYS 219 (333)
T ss_pred chHHHHHHHHhCCCCEEEE-Ecc-CccHHHHHHHHHHcCcccCCeeec
Confidence 3666888888999999998 332 3456667777887764 445543
No 410
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.48 E-value=1.3e+02 Score=25.84 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=31.4
Q ss_pred hhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
.++.++.|.+.|+|.|++-.+ ++++.+++.++++|+++++.+.
T Consensus 4 ~~~~l~~l~~~g~dgi~v~~~-------g~~~~~k~~~~~~~i~~~~~~n 46 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVSNP-------GLLELLKELGPDLKIIADYSLN 46 (233)
T ss_pred HHHHHHHHHhCCCCEEEEcCH-------HHHHHHHHhCCCCcEEEecCcc
Confidence 445677788999999987643 4556777776678888887653
No 411
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=22.42 E-value=6.2e+02 Score=23.31 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=21.0
Q ss_pred ccCchhHHHHhhhhhhccccEEEech
Q 024544 51 VSSPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
=++|+...+.-+...++|+|.|.-|-
T Consensus 71 g~~p~~~~~aA~~~~~~g~d~IdiN~ 96 (312)
T PRK10550 71 GQYPQWLAENAARAVELGSWGVDLNC 96 (312)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 37898877777777889999999883
No 412
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=22.34 E-value=2.1e+02 Score=25.11 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=25.5
Q ss_pred hHHHHHHHhcCCeEEeecchhh-----hHhhhCCCCCCccccccccccCchhHHHHhhhh
Q 024544 10 SFMTDFLQKCGGYSVVDGGFAT-----ELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64 (266)
Q Consensus 10 ~~l~~~l~~~~~~lllDGg~gT-----~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Y 64 (266)
..+++..+...-++.++||..+ .+...|++.- --..+++++|+++.++-+.|
T Consensus 65 ~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kv---viGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 65 ELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARV---NIGTAALENPEWCARVIAEH 121 (241)
T ss_pred HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEE---EECchHhCCHHHHHHHHHHh
Confidence 3444444433345667777663 2222244320 11233456777777766666
No 413
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.33 E-value=2.1e+02 Score=25.54 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.1
Q ss_pred hhHHhhhcCCCeEEee-ccchhhhHHHHHHHHhhcC
Q 024544 173 RVLILANSGADLIAFE-TIPNKLEAKAYAELLEEEG 207 (266)
Q Consensus 173 qi~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~ 207 (266)
|+....++|+|.+++- +.-+..+++.+++.++..+
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG 160 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG 160 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC
Confidence 6777778999999876 4435567888888777755
No 414
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=22.31 E-value=2.7e+02 Score=24.34 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=39.8
Q ss_pred hhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCcee---ecCchHHHhhhHHhh
Q 024544 173 RVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINV---VSGDSILECASIADS 239 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l---~~G~~~~~a~~~~~~ 239 (266)
+++.+.+.|+|-+++-|..-- . ..+-+++++.+ +-.+++|+.+.++ .. .++.++.+.+..+..
T Consensus 92 dv~~~l~~Ga~~viigt~~~~-~-~~~~~~~~~~~-~~~iivslD~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLP-S-DDDEDRLAALG-EQRLVLSLDFRGG-QLLKPTDFIGPEELLRRLAK 157 (233)
T ss_pred HHHHHHHcCCCeEEEcceecc-c-hHHHHHHHhcC-CCCeEEEEeccCC-eeccccCcCCHHHHHHHHHH
Confidence 345566789998887665532 3 45556666665 2368889987644 32 356667777776654
No 415
>PF05167 DUF711: Uncharacterised ACR (DUF711); InterPro: IPR007841 The proteins in this family are functionally uncharacterised. The proteins are around 450 amino acids long.; PDB: 2HA9_A.
Probab=22.27 E-value=2.5e+02 Score=27.07 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHhhhcCCCeEE--------eeccchhhhHHHHHHHHhhcCcccccceeeecC
Q 024544 175 LILANSGADLIA--------FETIPNKLEAKAYAELLEEEGITIPAWFSFNSK 219 (266)
Q Consensus 175 ~~l~~~gvD~i~--------~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~ 219 (266)
+++.+.|+|++- .-|-.+..++..+-+++..++ .+..|+.+.
T Consensus 80 ~~a~~~gi~~i~G~~alv~~g~~~~~~~~i~~ip~~l~~t~---~v~~svnv~ 129 (399)
T PF05167_consen 80 RAAEDLGIDFIGGYSALVQKGGTAGDKALIESIPEALASTG---RVCSSVNVA 129 (399)
T ss_dssp HHHHHHT-SEEEEEEEE-TT---TTHHHHHHHHHHHHHS-S---SEEEEEEEE
T ss_pred HHHHHcCCCeEcchHHhhhccCCcccHHHHHHHHHHHHhcC---CeEEEEEec
Confidence 445678999998 567888888888889998865 345555553
No 416
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.14 E-value=5.9e+02 Score=23.03 Aligned_cols=158 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCCCCccccccccc-cCchhHHHHhhhhhhccccEEEech------------hhhhhhhhhccCCCHHHHHHHHHHHHH
Q 024544 37 GADLNDPLWSAKCLV-SSPHLVRKVHLDYLDAGANIIITAS------------YQATIQGFEAKGFSTEEAEALLRRSVE 103 (266)
Q Consensus 37 g~~~~~~lws~~~ll-~~Pe~V~~iH~~Yl~AGAdiI~TnT------------y~a~~~~l~~~g~~~~~~~~l~~~av~ 103 (266)
|+.+..|+..+.-.+ ++.+.++++.. .-+||=++.|-| |......+...|++........+.--+
T Consensus 5 Gl~l~nPi~~Asg~~~~~~e~~~~~~~--~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~ 82 (294)
T cd04741 5 GLTISPPLMNAAGPWCTTLEDLLELAA--SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRT 82 (294)
T ss_pred CeeCCCCCEECCCCCCCCHHHHHHHHH--cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhc---
Q 024544 104 IACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS--- 180 (266)
Q Consensus 104 lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~--- 180 (266)
.-+.. .+....|..||+.. . +.+.+.++.+.+.
T Consensus 83 ~~~~~---------------------~~~~~pvivsi~g~-~----------------------~~~~~~~~~~~~~~~~ 118 (294)
T cd04741 83 ISDGL---------------------PGSAKPFFISVTGS-A----------------------EDIAAMYKKIAAHQKQ 118 (294)
T ss_pred Hhhhc---------------------cccCCeEEEECCCC-H----------------------HHHHHHHHHHHhhccc
Q ss_pred CCCeEEeeccc-----------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhh-hhhhc
Q 024544 181 GADLIAFETIP-----------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE-QVVAV 246 (266)
Q Consensus 181 gvD~i~~ET~~-----------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~-~~~av 246 (266)
++|.|=+-.-. +.+.+..+++++++.- ++|+++-++... +-+.+.+++..+.... ++++|
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi 190 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFI 190 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEE
No 417
>PRK08114 cystathionine beta-lyase; Provisional
Probab=22.10 E-value=1e+02 Score=29.52 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=28.7
Q ss_pred hHHhhhcCCCeEEeeccchh----hhHHHHHHHHhhcCcccccce
Q 024544 174 VLILANSGADLIAFETIPNK----LEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~----~E~~a~~~a~~~~~~~~Pv~i 214 (266)
++..++....++++||.++. ..++++.+.+++.+++++++|
T Consensus 140 l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 140 IAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred HHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 34444556789999999987 578888888887532345444
No 418
>PLN02161 beta-amylase
Probab=22.08 E-value=1.2e+02 Score=30.20 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=32.5
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhh-----------HHHHHHHHhhcCcccccceeee
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLE-----------AKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E-----------~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
....++++|..+|||.|.++----+-| -+.+++.+|+.+..+-+++||-
T Consensus 118 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFH 177 (531)
T PLN02161 118 ALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFH 177 (531)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 355688999999999986554444444 2466777777765555566664
No 419
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=22.01 E-value=1.4e+02 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=28.4
Q ss_pred ccCchhHHHHhhhhhhcccc---EEEechhhhhhhhh
Q 024544 51 VSSPHLVRKVHLDYLDAGAN---IIITASYQATIQGF 84 (266)
Q Consensus 51 l~~Pe~V~~iH~~Yl~AGAd---iI~TnTy~a~~~~l 84 (266)
+.+|+.|++....++++|++ ||+-.-|..++.+.
T Consensus 2 i~d~~~~~~~~~~~~~~g~~~lqvisDFD~Tlt~~~~ 38 (277)
T TIGR01544 2 MADPTRVEEIICGLVKGGAAKLQIISDFDYTLSRFSY 38 (277)
T ss_pred CCCHHHHHHHHHHHHhcChhheEEeeccCccceeeec
Confidence 57899999999999999997 77777777666654
No 420
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=21.91 E-value=1.9e+02 Score=30.28 Aligned_cols=80 Identities=13% Similarity=0.038 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEee-----ccchhhhHHHHHHHHhhcC---cccccceeeecCCCceeecCchHHHhh
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFE-----TIPNKLEAKAYAELLEEEG---ITIPAWFSFNSKDGINVVSGDSILECA 234 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~E-----T~~~~~E~~a~~~a~~~~~---~~~Pv~iSf~~~~~~~l~~G~~~~~a~ 234 (266)
.+++...|++.++.|.++||+.|=+. +..+..+..++.++.+... .+.++.++..+.+ + .++.
T Consensus 179 l~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~------~---~~~~ 249 (758)
T PRK05222 179 LDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGS------L---NDAL 249 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccc------h---hhHH
Confidence 56788999999999999999987332 2222334555555554431 1235666655432 2 1334
Q ss_pred hHHhhhhhhhhcccccCC
Q 024544 235 SIADSCEQVVAVGINCTS 252 (266)
Q Consensus 235 ~~~~~~~~~~avGiNC~~ 252 (266)
..+.+ .+++++++-++.
T Consensus 250 ~~l~~-l~Vd~l~LD~~~ 266 (758)
T PRK05222 250 DLLAS-LPVDGLHLDLVR 266 (758)
T ss_pred HHHHc-CCCCEEEEEeeC
Confidence 45554 478889998874
No 421
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=21.84 E-value=1e+02 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.2
Q ss_pred cCchhHHHHhhhhhhccccEEEechhhhh
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASYQAT 80 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~ 80 (266)
...+-|..||+ -++.|-+-|-|.-|...
T Consensus 52 ~~e~~i~tv~e-A~k~GINyiDTsp~Ygq 79 (342)
T KOG1576|consen 52 DEEEGILTVIE-AFKSGINYIDTSPYYGQ 79 (342)
T ss_pred chhhhHHHHHH-HHHccccceecCcccCc
Confidence 34567888998 77899999999888543
No 422
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.78 E-value=5.5e+02 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEeecc
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFETI 190 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~ET~ 190 (266)
.+...+..++.++...+.||. |.+|+.
T Consensus 133 ~~~~~~~l~~l~~~A~~~GV~-i~iE~~ 159 (283)
T PRK13209 133 RRRFIDGLKESVELASRASVT-LAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCE-EEEeec
Confidence 344455556666666667885 555876
No 423
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=21.78 E-value=93 Score=28.44 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=37.3
Q ss_pred CeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhcccc-EEEechhh
Q 024544 21 GYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGAN-IIITASYQ 78 (266)
Q Consensus 21 ~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAd-iI~TnTy~ 78 (266)
+.+||-||.||.|.-.......|+- .+...| +|.-+-+...++|.+ |+..-.|+
T Consensus 5 kavILAaG~GTRL~PlT~~~PKpLv---pV~gkP-iI~~vl~~l~~~Gi~~ivivv~~~ 59 (297)
T TIGR01105 5 KAVIPVAGLGMHMLPATKAIPKEML---PIVDKP-MIQYIVDEIVAAGIKEIVLVTHAS 59 (297)
T ss_pred EEEEECCCCCcccCcccCCCCceee---EECCEE-HHHHHHHHHHHCCCCEEEEEecCC
Confidence 5799999999999665444434432 245677 888888888899976 44444453
No 424
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.75 E-value=2.7e+02 Score=24.78 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=39.5
Q ss_pred hhhHHhhhcCCCeEEeec-cc----------hhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh
Q 024544 172 RRVLILANSGADLIAFET-IP----------NKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET-~~----------~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~ 240 (266)
+.++.+.+.|+|.|-+-. .| +...+..+++++++.- ++|+++-+.... +-+.+.+.+..+.+
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~-----~~~~~~~~a~~l~~- 187 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYF-----DLEDIVELAKAAER- 187 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCC-----CHHHHHHHHHHHHH-
Confidence 345666777999886542 22 3455667778787753 588887775321 11123344444444
Q ss_pred hhhhhccc
Q 024544 241 EQVVAVGI 248 (266)
Q Consensus 241 ~~~~avGi 248 (266)
.++++|-+
T Consensus 188 ~Gad~i~~ 195 (289)
T cd02810 188 AGADGLTA 195 (289)
T ss_pred cCCCEEEE
Confidence 46666554
No 425
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.73 E-value=80 Score=28.63 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCCCCccccccc-cccCchhHHHHhhhhhhccccEEEechhhhh
Q 024544 37 GADLNDPLWSAKC-LVSSPHLVRKVHLDYLDAGANIIITASYQAT 80 (266)
Q Consensus 37 g~~~~~~lws~~~-ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~ 80 (266)
|+.+..|+..+.. +-.+.+.++ .+.++|+..|+|-|+...
T Consensus 8 G~~~~nPv~~aag~~~~~~~~~~----~~~~~g~g~v~~kti~~~ 48 (301)
T PRK07259 8 GLKLKNPVMPASGTFGFGGEYAR----FYDLNGLGAIVTKSTTLE 48 (301)
T ss_pred CEECCCCcEECCcCCCCCHHHHH----HhhhcCCcEEEeCCCCCC
Confidence 5555556544332 333444443 345788888888887643
No 426
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.70 E-value=2.1e+02 Score=29.08 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred hHHhhhcCCCeE-EeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccc-
Q 024544 174 VLILANSGADLI-AFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGIN- 249 (266)
Q Consensus 174 i~~l~~~gvD~i-~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiN- 249 (266)
++...++|+|.| +|-.+++...++..++++++.+...-+.++++..+ . .+++..+..++.. .+++.|.|-
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p--~----~t~~~~~~~a~~l~~~Gad~I~i~D 175 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSP--V----HTIEKYVELAKELEEMGCDSICIKD 175 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCC--C----CCHHHHHHHHHHHHHcCCCEEEECC
Confidence 344567899988 45577888888888999988763222333443321 1 2343333333221 344444331
Q ss_pred ---cCCcchhhhhheeee
Q 024544 250 ---CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ---C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 176 t~G~~~P~~~~~lv~~lk 193 (592)
T PRK09282 176 MAGLLTPYAAYELVKALK 193 (592)
T ss_pred cCCCcCHHHHHHHHHHHH
Confidence 123677766666554
No 427
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.66 E-value=1.7e+02 Score=29.70 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=45.9
Q ss_pred hHHhhhcCCCeEEe-eccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccc-
Q 024544 174 VLILANSGADLIAF-ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGIN- 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~-ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiN- 249 (266)
++...++|+|.|-+ -.+++...++..++.+++.+ +.+.++++...... .+++..+..+++. .+++.|.+-
T Consensus 97 v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~----~~~~~~~~~~~~~~~~Gad~I~i~D 170 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHG--AHAQGTISYTTSPV----HTLETYLDLAEELLEMGVDSICIKD 170 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CEEEEEEEeccCCC----CCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45566789998744 46677888888889999876 34443332211111 2333333333221 344444331
Q ss_pred ---cCCcchhhhhheeee
Q 024544 250 ---CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ---C~~p~~~~~~l~~l~ 264 (266)
+..|..+..+++.++
T Consensus 171 t~G~~~P~~v~~lv~~lk 188 (582)
T TIGR01108 171 MAGILTPKAAYELVSALK 188 (582)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 124777776666554
No 428
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.64 E-value=3.2e+02 Score=24.22 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=42.6
Q ss_pred HHhhhhhHHhhhcCCCeEEee-cc--chhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHh
Q 024544 168 EFHRRRVLILANSGADLIAFE-TI--PNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIAD 238 (266)
Q Consensus 168 ~~~~~qi~~l~~~gvD~i~~E-T~--~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~ 238 (266)
+++.+.++.+.+.|+|.|.+= |+ -.+.++..+++.+++.- +. +-+.|-+.++ .|..+..++..+.
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~-~~l~~H~Hn~----~GlA~AN~laAi~ 208 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREAL-DP-TPVGFHGHNN----LGLAVANSLAAVE 208 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhC-CC-ceEEEEecCC----cchHHHHHHHHHH
Confidence 345556777888999998664 43 34667777788887642 12 3567777765 4766666666554
No 429
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.64 E-value=6.1e+02 Score=22.94 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhhHHhhhcCCCeEEeecc----------c---------------hhhhHHHHHHHHhhc-Ccccccceee
Q 024544 163 LETLKEFHRRRVLILANSGADLIAFETI----------P---------------NKLEAKAYAELLEEE-GITIPAWFSF 216 (266)
Q Consensus 163 ~~e~~~~~~~qi~~l~~~gvD~i~~ET~----------~---------------~~~E~~a~~~a~~~~-~~~~Pv~iSf 216 (266)
.+++.+.|..-++.+.++|.|.|=+=.- | ...-+..+++++++. +.+.|+.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3445556766677778899998855432 0 122234566666653 4457888777
Q ss_pred ecCCCceeecCchHHHhhhHHhhh--hhhhhccccc
Q 024544 217 NSKDGINVVSGDSILECASIADSC--EQVVAVGINC 250 (266)
Q Consensus 217 ~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiNC 250 (266)
+..+ ....|.+.++++..+... .+++.|-+..
T Consensus 216 s~~~--~~~~g~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 216 SADD--FVPGGLTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred chhc--cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 6532 123466677766554322 3566665433
No 430
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=21.59 E-value=5.9e+02 Score=24.88 Aligned_cols=106 Identities=10% Similarity=0.174 Sum_probs=65.9
Q ss_pred cCchhHHHHhhhhhhccccEEEechh-hhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCcc
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITASY-QATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRIS 130 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnTy-~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (266)
.+|-.|+...+-=.+.|..+++-.|= |.|..+-- .|+.+....+.+. ++|.+.- .+
T Consensus 25 ahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~---~iA~~~g-------------------f~ 81 (426)
T PRK15458 25 AHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGY-TGMTPADFRGFVC---QLADSLN-------------------FP 81 (426)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHH---HHHHHcC-------------------CC
Confidence 57777777677667778887777764 44444321 3677654444333 3444431 12
Q ss_pred ccceEEEEe-cccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEee-ccchh
Q 024544 131 SRPVLVAAS-VGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFE-TIPNK 193 (266)
Q Consensus 131 ~~~~~VaGs-iGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~~~~ 193 (266)
..+++..|. +||-. + .+++.+++-..-+..+++.+++|-+.|-+- ||++.
T Consensus 82 ~~~iiLGGDHLGPn~------------W-q~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 133 (426)
T PRK15458 82 QEALILGGDHLGPNR------------W-QNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCA 133 (426)
T ss_pred hhhEEeecCCCCCcc------------c-cCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCCC
Confidence 334555555 56621 2 246778888888889999999999999887 44433
No 431
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=21.56 E-value=1.6e+02 Score=24.94 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=22.6
Q ss_pred hhhhhHHhhhcCCCeEEe-----eccchhhhHHHHHHHHhh
Q 024544 170 HRRRVLILANSGADLIAF-----ETIPNKLEAKAYAELLEE 205 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i~~-----ET~~~~~E~~a~~~a~~~ 205 (266)
+.+.++.+.++|+|+|-+ ...|+.......++.+++
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~ 58 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRK 58 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHh
Confidence 445788899999999998 655553322333444443
No 432
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=21.55 E-value=1.3e+02 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=38.3
Q ss_pred eeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhH---Hhhhhhhhhccccc
Q 024544 187 FETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASI---ADSCEQVVAVGINC 250 (266)
Q Consensus 187 ~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~---~~~~~~~~avGiNC 250 (266)
..|+.+.+.++.+.+..++.+...+|++-+....+ +.|-..+++... +...+++...|+-|
T Consensus 88 ~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG~~---R~G~~~~~~~~l~~~i~~~~~l~l~Gl~t 151 (218)
T PF01168_consen 88 IPTVDSLEQLEALSKAAKKQGKPLKVHLKVDTGMG---RLGVRPEELEELAEAIKALPNLRLEGLMT 151 (218)
T ss_dssp EEEE-SHHHHHHHHHHHHHHTSTEEEEEEBESSSS---SSSBECHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred EEEEchhhHHHHHHHHHHHcCCceEEEEeeccccc---ccCCCHHHHHHHHHHHhcCCCceEeeEec
Confidence 35888998988888888766656778877755322 567666655443 34334455566644
No 433
>PLN00197 beta-amylase; Provisional
Probab=21.40 E-value=1.3e+02 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=32.4
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhh-----------HHHHHHHHhhcCcccccceeee
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLE-----------AKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E-----------~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
..+.++++|..+|||.|.+.----+-| -+.+++.+|+.+..+-+++||-
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFH 187 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFH 187 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 355688999999999986655444444 2456777777764455555664
No 434
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.37 E-value=6.3e+02 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=19.7
Q ss_pred cCchhHHHHhhhhhhccccEEEech
Q 024544 52 SSPHLVRKVHLDYLDAGANIIITAS 76 (266)
Q Consensus 52 ~~Pe~V~~iH~~Yl~AGAdiI~TnT 76 (266)
++|+.+.+.=+.-.++|+|.|.-|-
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~ 96 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINM 96 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6787666666666789999999985
No 435
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.35 E-value=2.6e+02 Score=27.24 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEee-ccchhhhHHHH-HHHHhhcCcccccceeee
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAFE-TIPNKLEAKAY-AELLEEEGITIPAWFSFN 217 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~E-T~~~~~E~~a~-~~a~~~~~~~~Pv~iSf~ 217 (266)
+...++.+=.+.++.|.+.|||.+++= |.+.....-+. ++.+.+.+ +|++.-.+
T Consensus 317 ~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~G--iPvv~~~~ 372 (431)
T TIGR01918 317 TVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAG--IPVVHMCT 372 (431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcC--CCEEEEee
Confidence 456677888888899999999999887 77777765544 46677765 78765444
No 436
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.31 E-value=2.6e+02 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=18.8
Q ss_pred hHHHHHHHhhhhhHHhhhcCCCeEEe
Q 024544 162 SLETLKEFHRRRVLILANSGADLIAF 187 (266)
Q Consensus 162 ~~~e~~~~~~~qi~~l~~~gvD~i~~ 187 (266)
+.++-.+-+..+++...+.|+|+++|
T Consensus 13 ~~~~n~~~i~~~i~~a~~~gadliv~ 38 (261)
T cd07585 13 DKARNLAVIARWTRKAAAQGAELVCF 38 (261)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 34555566677777777889999976
No 437
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=21.24 E-value=1.8e+02 Score=26.99 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=31.5
Q ss_pred hhhHHhhhcCCCeEEeeccchhh---hHHHHHHHHhhcCcccccceeeecCC
Q 024544 172 RRVLILANSGADLIAFETIPNKL---EAKAYAELLEEEGITIPAWFSFNSKD 220 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~~~---E~~a~~~a~~~~~~~~Pv~iSf~~~~ 220 (266)
++++.+++.|++.|++|.+..-. ++..+++.+.+. ++||+++-.|..
T Consensus 224 ~~l~~~~~~g~~GiVl~~~G~Gn~p~~~~~~l~~a~~~--gi~VV~~Sq~~~ 273 (323)
T cd00411 224 EAVRAFLRAGYKGIVLAGYGAGNVPTDLIDELEEAAER--GVVVVNSTQCEE 273 (323)
T ss_pred HHHHHHHhCCCCEEEEEeECCCCCCHHHHHHHHHHHHC--CCEEEEecCCCC
Confidence 45677778899999999754321 445555544443 489999877744
No 438
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.20 E-value=4e+02 Score=24.46 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=26.7
Q ss_pred hhhHHhhhcCCCeEEeeccch-----hhhHHHHHHHHhhcCcccccce
Q 024544 172 RRVLILANSGADLIAFETIPN-----KLEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 172 ~qi~~l~~~gvD~i~~ET~~~-----~~E~~a~~~a~~~~~~~~Pv~i 214 (266)
+-++.|.+.|||++=+| +|- -.|+.++.+-+... .++|+++
T Consensus 190 ~a~k~fsd~GadvlKve-vPvyveGe~~ea~~~f~~~~~~-~~lP~i~ 235 (306)
T COG3684 190 EAMKEFSDSGADVLKVE-VPVYVEGEQEEAAAAFQRQNDH-INLPWIY 235 (306)
T ss_pred HHHHHhccCCCceEEee-cceeccCccHHHHHHHHHhhcC-CCCCeEE
Confidence 34567888999999888 454 45655555555443 3688753
No 439
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=21.16 E-value=1.1e+02 Score=29.15 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHhhhcCCCeEEeeccchh----hhHHHHHHHHhhcCcccccce
Q 024544 175 LILANSGADLIAFETIPNK----LEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 175 ~~l~~~gvD~i~~ET~~~~----~E~~a~~~a~~~~~~~~Pv~i 214 (266)
+..++...++|++||..+. .++.++.+++++.+ +++++|
T Consensus 134 ~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vV 176 (386)
T PF01053_consen 134 EAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVV 176 (386)
T ss_dssp HHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEE
T ss_pred HhhccccceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEe
Confidence 3344457899999999874 46778888888865 356555
No 440
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=21.08 E-value=2.7e+02 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=24.6
Q ss_pred cccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCCCHHHH
Q 024544 50 LVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEA 94 (266)
Q Consensus 50 ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~~~~~~ 94 (266)
.++.|+-...+++ |-+.|||+++|-= +..+++.|++.+.+
T Consensus 72 DLk~~~g~~~l~~--Lv~~ADVvien~r---pg~~~rlGL~~~~L 111 (415)
T TIGR03253 72 NTKTPEGKEVLEE--LIKKADVMVENFG---PGALDRMGFTWEYI 111 (415)
T ss_pred eCCCHHHHHHHHH--HHhhCCEEEECCC---CChHHHcCCCHHHH
Confidence 4456654333333 2456999998853 56677779886543
No 441
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=21.00 E-value=1.5e+02 Score=28.09 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=26.5
Q ss_pred hhhhhHHhhhcCCCeE-Eeec------cchhhhHHHHHHHHhh----cCcccccceeee
Q 024544 170 HRRRVLILANSGADLI-AFET------IPNKLEAKAYAELLEE----EGITIPAWFSFN 217 (266)
Q Consensus 170 ~~~qi~~l~~~gvD~i-~~ET------~~~~~E~~a~~~a~~~----~~~~~Pv~iSf~ 217 (266)
|.+++..+..+|||+| --|. .|--+-++++.+++++ ++..+++.+.++
T Consensus 143 ~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit 201 (364)
T cd08210 143 LAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT 201 (364)
T ss_pred HHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC
Confidence 4445667778999999 2232 2323334455555543 444466666653
No 442
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=20.99 E-value=3.1e+02 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=26.7
Q ss_pred hhhhHHhhhcCCCeEEeeccc---------------hhhhHHHHHHHHhhc
Q 024544 171 RRRVLILANSGADLIAFETIP---------------NKLEAKAYAELLEEE 206 (266)
Q Consensus 171 ~~qi~~l~~~gvD~i~~ET~~---------------~~~E~~a~~~a~~~~ 206 (266)
.+.++.|.+.++-.|.+|++| ++.--+++++++...
T Consensus 98 ~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~~l 148 (511)
T TIGR00561 98 PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAHEF 148 (511)
T ss_pred HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHHHh
Confidence 446788889999999999999 333355677776654
No 443
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=20.99 E-value=1.8e+02 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHhhhhhHHhhhcCCCeEE
Q 024544 166 LKEFHRRRVLILANSGADLIA 186 (266)
Q Consensus 166 ~~~~~~~qi~~l~~~gvD~i~ 186 (266)
..++|++..+.+.+.++|.++
T Consensus 369 ~~~~h~~~~~~~~~~~~d~v~ 389 (453)
T PRK10773 369 SEACHRQVGEAAKAAGIDKVL 389 (453)
T ss_pred HHHHHHHHHHHHHHcCCCEEE
Confidence 467899988988888999876
No 444
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.92 E-value=4.1e+02 Score=22.18 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=44.0
Q ss_pred cccceEEEEecccccceecCCCccccCCCCchhHHHHHHHhhhhhHHhhhcCCCeEEeeccchhhhHH------HHHHHH
Q 024544 130 SSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAK------AYAELL 203 (266)
Q Consensus 130 ~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~------a~~~a~ 203 (266)
++..+-|.=++||-. +++ .++...+.+.-.. ++.-++.++|++++-=|.-. |+. .+.+++
T Consensus 55 ~G~~~~IsQ~LG~gs---------~gC---rLD~~~La~A~~~-l~~al~~~~DLlivNkFGk~-Ea~G~Glr~~i~~A~ 120 (159)
T PF10649_consen 55 SGRRIRISQDLGPGS---------RGC---RLDPGALAEASAA-LRRALAEGADLLIVNKFGKQ-EAEGRGLRDEIAAAL 120 (159)
T ss_pred CCCEEEEeeccCCCC---------ccc---ccCHHHHHHHHHH-HHHHHhcCCCEEEEcccHHh-hhcCCCHHHHHHHHH
Confidence 345566777788732 233 4677777665553 45555679999999988855 433 222333
Q ss_pred hhcCcccccceeee
Q 024544 204 EEEGITIPAWFSFN 217 (266)
Q Consensus 204 ~~~~~~~Pv~iSf~ 217 (266)
. .++||.+++.
T Consensus 121 ~---~giPVLt~V~ 131 (159)
T PF10649_consen 121 A---AGIPVLTAVP 131 (159)
T ss_pred H---CCCCEEEEEC
Confidence 3 2588888773
No 445
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.85 E-value=1.5e+02 Score=28.13 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=16.7
Q ss_pred chhHHHHhhhhhhccccEEEec
Q 024544 54 PHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 54 Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
.+...++-+...++|.+.|..-
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe
Confidence 4455566677889999999974
No 446
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.66 E-value=1.5e+02 Score=26.65 Aligned_cols=83 Identities=20% Similarity=0.130 Sum_probs=45.5
Q ss_pred hHHhhhcCCCeEEee-ccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhh--hhhhhcccc-
Q 024544 174 VLILANSGADLIAFE-TIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC--EQVVAVGIN- 249 (266)
Q Consensus 174 i~~l~~~gvD~i~~E-T~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~--~~~~avGiN- 249 (266)
++...+.|+|.|-+- ...++++++.+++.+|+.+ ..|.+++. +. .+.+.+..+..++.. .+++.|.+-
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~--~a----~~~~~~~~~~~~~~~~~~g~~~i~l~D 159 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLM--AI----SGYSDEELLELLELVNEIKPDVFYIVD 159 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEE--ee----cCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 344456789976443 4567777888888888766 44444442 21 234455444444321 244443331
Q ss_pred ---cCCcchhhhhheeee
Q 024544 250 ---CTSPRFIHGLILSVR 264 (266)
Q Consensus 250 ---C~~p~~~~~~l~~l~ 264 (266)
+..|+.+..+++.++
T Consensus 160 T~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 160 SFGSMYPEDIKRIISLLR 177 (266)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 234777777776554
No 447
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=20.56 E-value=6.5e+02 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=17.0
Q ss_pred CchhHHHHhhhhhhccccEEEec
Q 024544 53 SPHLVRKVHLDYLDAGANIIITA 75 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~Tn 75 (266)
+.+.+++.-+-++++|++-|..+
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~ 48 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAA 48 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 45567777777889999966554
No 448
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.55 E-value=1.9e+02 Score=24.56 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=12.1
Q ss_pred CchhHHHHhhhhhhcccc
Q 024544 53 SPHLVRKVHLDYLDAGAN 70 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAd 70 (266)
+++.+.++-++.++.|.+
T Consensus 9 D~~~~~~~v~~~l~~g~~ 26 (201)
T cd02070 9 DEEETVELVKKALEAGID 26 (201)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 456666777777777754
No 449
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.54 E-value=1.2e+02 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=29.6
Q ss_pred hHHhhhcCCCeEEeeccchh----hhHHHHHHHHhhcCcccccce
Q 024544 174 VLILANSGADLIAFETIPNK----LEAKAYAELLEEEGITIPAWF 214 (266)
Q Consensus 174 i~~l~~~gvD~i~~ET~~~~----~E~~a~~~a~~~~~~~~Pv~i 214 (266)
++.+++.+..+|++|+..+. .+++++.+.+++.+ +++++
T Consensus 142 l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~g--i~liv 184 (433)
T PRK08134 142 WRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAG--VPLLV 184 (433)
T ss_pred HHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcC--CEEEE
Confidence 44455567899999999887 78899999888765 55554
No 450
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=20.48 E-value=1.1e+02 Score=28.85 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=39.7
Q ss_pred hhHHhhhcCCCeEEeec---------cchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhh---h
Q 024544 173 RVLILANSGADLIAFET---------IPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADS---C 240 (266)
Q Consensus 173 qi~~l~~~gvD~i~~ET---------~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~---~ 240 (266)
-++.+.++|||.|.+-. .+.+.-+..+.+++++.+.++|++.+-- +++|.++.+++..=.. -
T Consensus 226 dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GG------Ir~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 226 DAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGG------VRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC------CCCHHHHHHHHHcCCCEEEE
Confidence 35567789999987432 2322222233333333332478776543 3467655544321000 0
Q ss_pred hhhhhcccccCCcchhhhhhee
Q 024544 241 EQVVAVGINCTSPRFIHGLILS 262 (266)
Q Consensus 241 ~~~~avGiNC~~p~~~~~~l~~ 262 (266)
..+...++.|.+.+.+..+++.
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~ 321 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQI 321 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHH
Confidence 1223344555555555544443
No 451
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=20.42 E-value=70 Score=29.40 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCC-eEEeeccchhhhHH---HHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhcccccCCc
Q 024544 180 SGAD-LIAFETIPNKLEAK---AYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSP 253 (266)
Q Consensus 180 ~gvD-~i~~ET~~~~~E~~---a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGiNC~~p 253 (266)
.|++ +.+=|.+..-.-+. ...+.+.....+.|+++.+.-. +.+.+.+++..+.. .++++|-+||..|
T Consensus 20 ~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~-~~~~~IDlN~GCP 90 (309)
T PF01207_consen 20 FGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIVAE-LGFDGIDLNMGCP 90 (309)
T ss_dssp CTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHHCC-TT-SEEEEEE---
T ss_pred HCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhhhc-cCCcEEeccCCCC
Confidence 4665 77777666432211 1122222223345788877421 33455566665554 5889999999866
No 452
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.42 E-value=1.6e+02 Score=26.62 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=22.8
Q ss_pred CchhHHHHhhhhhhccccEEEechhhhhhhhh
Q 024544 53 SPHLVRKVHLDYLDAGANIIITASYQATIQGF 84 (266)
Q Consensus 53 ~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l 84 (266)
.+|...++-+.-.++|.+.|..-+| .++..+
T Consensus 18 s~e~K~~i~~~L~~~Gv~~IEvGs~-~~~~~~ 48 (274)
T cd07938 18 PTEDKIELIDALSAAGLRRIEVTSF-VSPKWV 48 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC-CCcccc
Confidence 3466677778888999999999987 344333
No 453
>PLN02705 beta-amylase
Probab=20.29 E-value=1.4e+02 Score=30.58 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=31.9
Q ss_pred HhhhhhHHhhhcCCCeEEeeccchhhh-----------HHHHHHHHhhcCcccccceeee
Q 024544 169 FHRRRVLILANSGADLIAFETIPNKLE-----------AKAYAELLEEEGITIPAWFSFN 217 (266)
Q Consensus 169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E-----------~~a~~~a~~~~~~~~Pv~iSf~ 217 (266)
..+.++++|..+|||.|.++----+-| -+.+++.+|+.+..+-+++||-
T Consensus 269 al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 328 (681)
T PLN02705 269 GVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFH 328 (681)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEee
Confidence 355578899999999886554444444 2456677777764455555664
No 454
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.27 E-value=3.7e+02 Score=25.08 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred chhHHH---HHHHhhhhhHHhhhcCCCeEEeec----------cc--h----------hhh---HHHHHHHHhhc-C---
Q 024544 160 AVSLET---LKEFHRRRVLILANSGADLIAFET----------IP--N----------KLE---AKAYAELLEEE-G--- 207 (266)
Q Consensus 160 ~~~~~e---~~~~~~~qi~~l~~~gvD~i~~ET----------~~--~----------~~E---~~a~~~a~~~~-~--- 207 (266)
.+|.+| +.+.|..-++...++|.|.|=+=- -| + .+. +..+++++|+. +
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~ 212 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHA 212 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcccc
Confidence 355544 555666666667779999985532 11 1 112 23455556653 3
Q ss_pred -cccccceeeecCCCceeecCchHHHhhhHHhh--hhhhhhccccc
Q 024544 208 -ITIPAWFSFNSKDGINVVSGDSILECASIADS--CEQVVAVGINC 250 (266)
Q Consensus 208 -~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~--~~~~~avGiNC 250 (266)
.+.|+.+-++.. .....|.++++.+..+.. ..+++.|.|-+
T Consensus 213 ~~~~~v~~R~s~~--~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 213 DKDFILGYRFSPE--EPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCCceEEEEECcc--cccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 234455444432 233457777776654432 24667766644
No 455
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.18 E-value=1.6e+02 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=18.9
Q ss_pred hhhcCCCeEEeeccchhhhHHHHHHHHh
Q 024544 177 LANSGADLIAFETIPNKLEAKAYAELLE 204 (266)
Q Consensus 177 l~~~gvD~i~~ET~~~~~E~~a~~~a~~ 204 (266)
..+.|+|.|.+..+ .+++++.+++.++
T Consensus 204 A~~~gaDyI~lD~~-~~e~l~~~~~~~~ 230 (277)
T PRK08072 204 AVAAGADIIMFDNR-TPDEIREFVKLVP 230 (277)
T ss_pred HHHcCCCEEEECCC-CHHHHHHHHHhcC
Confidence 34689999999764 4677777776543
Done!