BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024545
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSE 106
G+ KLS +K+EWN+R S+FHA + LY+L+ D + D + D ++
Sbjct: 37 GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYILVYDDAVNADPVWGDPFMVKLN----- 91
Query: 107 TVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTE 166
+ ++ GY +SDL +I++ + +G +V HH ++++ + L G + L E
Sbjct: 92 --VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAE 149
Query: 167 ITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARI-LLFIYFFVHMAIHFDQVKE 224
+TPFVN RW+ +V G K S + NGV + + + + RI ++ IY+ + +
Sbjct: 150 FSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFH 209
Query: 225 IFPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTL 259
LG ++ + L IMNV W KIAKG + L
Sbjct: 210 RLGLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVL 245
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 8/221 (3%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
G+ LS +KK+EWN+R ST H+ + LY+ L + D + SL+
Sbjct: 37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKAD-----PLWGGPSLANVN 91
Query: 109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
+ I+ GY +SDL++I+ + +G +++HH S+++ +L L +G L E++
Sbjct: 92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151
Query: 169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARI--LLFIYFFVHMAIHFDQVKEI 225
+PFVN RW+ + K S + NG+ + + + + RI +L Y F++ + +
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRL 211
Query: 226 FPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
L S ++ +L +MNV W KI+KG I+ +S R +
Sbjct: 212 GVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQEK 252
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 18/226 (7%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
GY LS +KK+EWN+R ST H+ + LYL ++DE I T
Sbjct: 50 GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLF---------FFDEATITDPLWGDPTY 100
Query: 109 LGISI----GYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
+ I+I GY +SDL +IL+ + +G +++HH + + + L +G L
Sbjct: 101 VNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLL 160
Query: 165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVARILLF--IYFFVHMAIHFDQ 221
E+++PFVN RW+ + K S + NG+ + + + + RI+ +YFF++ +++ +
Sbjct: 161 AELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLY-SVYGTE 219
Query: 222 VKEIFPLGFYSLLVVPP-MLAIMNVFWFWKIAKGLIRTLSKTRHSR 266
F S+ +V +L +MN+ W KI KG I+ +S R +
Sbjct: 220 PYIRFGFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVISLIRQEK 265
>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1
Length = 258
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 26/229 (11%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
YR+LS K+ EW++R ST HA I +A LY+L D + D + D +
Sbjct: 37 YRQLSFGKQCEWDSRFVSTNHALIVGSACLYILAYDDAVNADPIWGDPFWVKMN------ 90
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY + DL ++ + + V HH +S L G + L +E+
Sbjct: 91 -VAITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 149
Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIF 226
+TPFVN RW+ DV G +SS + NG+A+ L + + RI + + ++ QV F
Sbjct: 150 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAV-------IPSYYSQVFATF 202
Query: 227 PLGFYSLLVVPPMLA---------IMNVFWFWKIAKGLIRTLSKTRHSR 266
Y L + P +A I+NVFW +KIA+G + + +
Sbjct: 203 GTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKPDGK 251
>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56b PE=3 SV=1
Length = 257
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 27/241 (11%)
Query: 38 LTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELI 97
L II ++ K K++EW NR ST +A + S S+Y L YY+E I
Sbjct: 26 LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCL---------YYNEWI 76
Query: 98 INR---TSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGK 154
+N TS +S + YF+ D + + L +LHH +++ S G
Sbjct: 77 VNSLRSTSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGL 136
Query: 155 AQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVH 214
A +L FTEITTP +NLR++L LK+ +Y+ NG+ +F+G+++ R+ F
Sbjct: 137 AHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRV------FYT 190
Query: 215 MAIHFDQV-------KEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIR--TLSKTRHS 265
A FD + E PL + + V P + ++N++W + I+K + + T SK +S
Sbjct: 191 SATMFDVIFNQPHYSIETDPLIPFFINFVYPAITLLNLYWTFYISKSIFKYFTTSKNENS 250
Query: 266 R 266
R
Sbjct: 251 R 251
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 26/229 (11%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
YR+LS K+ EW++R ST HA + + LY+L + + D + D +
Sbjct: 38 YRQLSFGKQCEWDSRCVSTTHALVVGSGCLYILAYDEAVNADPIWGDPFWVKMN------ 91
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY + DL ++ + + V HH +S L G + L +E+
Sbjct: 92 -VAITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 150
Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIF 226
+TPFVN RW+ DV G +SS + NG+A+ L + + RI + + ++ QV F
Sbjct: 151 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAV-------IPSYYSQVFATF 203
Query: 227 PLGFYSLLVVPPMLA---------IMNVFWFWKIAKGLIRTLSKTRHSR 266
Y L + P +A I+NVFW +KIA+G + + +
Sbjct: 204 GTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKPDGK 252
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 8/222 (3%)
Query: 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
+GY KL K +WN+R ST HA I LY+L D +ED + +L +
Sbjct: 33 QGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNED-----PVWGDPNLVKL 87
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY DL ++ + +G + +V HH ++++ L G + L +E+
Sbjct: 88 NVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISEL 147
Query: 168 TTPFVNLRWYLD-VAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHM-AIHFDQVKEI 225
+TPFVN RW+ + +A ++ + + NG+A+ + + + RI + ++ + I + E
Sbjct: 148 STPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVFGIIYSPTFEK 207
Query: 226 FPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTLSKTRHSR 266
L ++ + L I+N+ W +KIA+G + ++ R
Sbjct: 208 LGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGKLKGR 249
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 51 RKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLG 110
++LS K+EW N+ +T + ++ + S Y + +++ + + T +LS+ +L
Sbjct: 41 KQLSYSSKIEWTNKIVATISSIVSFSLSCYCI-----YNKKSWVTNEMTSTCALSDFILK 95
Query: 111 ISIGYFLSDLAMILWLYPALGGLEYVLHH---GLSMFSIFLALVSGKAQIYILMVLFTEI 167
YFL D ++ Y L ++HH G+ + +++ L K + +L L EI
Sbjct: 96 FISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSY-VYIGLYYKKVHLTLLYFLLFEI 154
Query: 168 TTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMA-IHFDQVKEIF 226
T PF++++W+L L++ +Y NG + ++ R IY + + I+ + E+
Sbjct: 155 TNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRD---IYVPIKVVKIYINGYTELN 211
Query: 227 PLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTRHS 265
+ + P++ I+N+FW + + KG+++ LS+T+ S
Sbjct: 212 SIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTKTS 250
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 14/216 (6%)
Query: 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
K Y L+ +KKLEW+ R S HAF+ L ++S + S Y D S L
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLV----LPFCIISAVESFKYGDIFYFQNDSLL--M 106
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHH--GLSMFSIFLALVSGKAQIY--ILMVL 163
VL IS GYF+ DL +I + P L G ++H GLS +I++AL G+ + ++L
Sbjct: 107 VLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSS-NIYVALPHGRPCFVPIVAILL 164
Query: 164 FTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVK 223
TEI+T +N++ ++ V KS Y + A + +LV+R ++ + F +++ Q
Sbjct: 165 ITEISTIPLNMKGFIQVVNSKSK-YYNWSLGAFVITFLVSRCIIGLPFDIYLVYGCIQRW 223
Query: 224 EIFPLGFYSLLVVPPMLA-IMNVFWFWKIAKGLIRT 258
++FP+ + + + +N +W + + K L +T
Sbjct: 224 DVFPMDKSLVFITECGIQFFLNSYWSFLLIKKLYQT 259
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
+L+ + EWN R + H ++ S Y+ + + + + + L VL +
Sbjct: 25 RLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
++GYF+ DL ++ G + HH LS+ I +ALV G++ + VLF +EIT P
Sbjct: 81 TLGYFIFDLGWCIYFRSE--GPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEITNP 138
Query: 171 FVNLRWYLDVAG 182
+ +RW+L G
Sbjct: 139 LLQIRWFLRETG 150
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 54 SNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLF------SEDYYDELIINRTSSLSET 107
++ + EWN R + FH + + Y+ ++ + +E+ Y +++
Sbjct: 26 NSGRDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQIL---------- 75
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TE 166
L +S+GYFL D+A ++ G + HH +S+F I LAL G++ I VLF +E
Sbjct: 76 TLVLSLGYFLFDMAWCVYFRTE--GPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSE 133
Query: 167 ITTPFVNLRWYLDVAGLKSS 186
IT P + RW+L G S
Sbjct: 134 ITNPLLQARWFLKRMGCYDS 153
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 53 LSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGIS 112
L+ + EW+ R + H ++ S Y+ + + + + + L VL ++
Sbjct: 26 LNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCLT 81
Query: 113 IGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTPF 171
+GYF+ DL ++ G + HH LS+ I +AL G++ + VLF +EIT P
Sbjct: 82 LGYFIFDLGWCIYFQSE--GPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPL 139
Query: 172 VNLRWYLDVAG 182
+ +RW+L G
Sbjct: 140 LQMRWFLRETG 150
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
L+ + EW+ R + H ++ S Y+ + + + + + L VL +
Sbjct: 25 HLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
++GYF+ DL ++ G + HH LS+ I +ALV G++ + VLF +E+T P
Sbjct: 81 TLGYFIFDLGWCVYFQSE--GALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSELTNP 138
Query: 171 FVNLRWYLDVAG 182
+ +RW+L G
Sbjct: 139 LLQMRWFLRETG 150
>sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1
SV=1
Length = 279
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 24/218 (11%)
Query: 58 KLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFL 117
K+++N S A +++T +LL L + +Y+ ++ T S S V +S GYF+
Sbjct: 72 KIDFNVHTVSMIQAVVSNT-----VLLPTLTTPMHYN--VVTYTDSYSSMVSSLSAGYFI 124
Query: 118 SDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWY 177
DL M + Y L GLE+ H S++ + L+L Q +I L E +TPFVN+ W+
Sbjct: 125 WDLTMCV-RYFKLYGLEFTGHAIGSVYVMLLSL-RPFCQPWIGRFLIYEASTPFVNINWF 182
Query: 178 LDVAGLKSSN-----IYICNGVALFLGWLVARILLFIYFFVHMAIHFDQ---VKEIFP-L 228
+ KS N + NG+ L + V RI + + A+ F Q V++ P
Sbjct: 183 IMQCNAKSKNSIPLWFNVVNGLLLMTVFFVVRI---CWGSIASALLFRQMWKVRDELPKF 239
Query: 229 GFYSLLVVPPMLAIMNVFWFWK---IAKGLIRTLSKTR 263
+++ + + ++NV WF K IAK L + ++
Sbjct: 240 SAVTMMSLNIFMNLLNVLWFKKMIRIAKKLAKPAPTSK 277
>sp|A8WGS4|TLCD2_DANRE TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
Length = 246
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 10/204 (4%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
+ + +WNN S H+ I S+ + +ED +I S S ++ +
Sbjct: 31 ETARRNAWKWNNISTSFVHSLITGVWSVLCFCMHPQMAED-----LIETHSVFSHALVSV 85
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPF 171
SIGYF+ D ++ + E + HH + + +++++ + + ++ L EI + F
Sbjct: 86 SIGYFIYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVF 145
Query: 172 VNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGFY 231
++LR L +A L S Y N + ++V RI + + ++ +++ PL Y
Sbjct: 146 LHLRQVLRMANLAKSTFYRVNSMINLGTYVVFRINTLAWMTRWLVLN----RDLIPLFSY 201
Query: 232 SLLVVP-PMLAIMNVFWFWKIAKG 254
++ V ++ MN+ F+++ +
Sbjct: 202 TIGSVGLAIMTAMNIVLFYRLMRS 225
>sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.02c PE=4 SV=1
Length = 290
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 13/235 (5%)
Query: 34 IVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYY 93
I+ L+ +IS Y KLS + +L W+ S+ + + L + F + +
Sbjct: 52 IINILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLKEVNAFPDKLF 111
Query: 94 DELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSG 153
S ++ + ++ GYF+ DL + + Y + G+ +V+H ++ ++F+ S
Sbjct: 112 GY------SVVAGDIYALTAGYFVWDLYITV-RYVHITGIGFVIH---AIAALFVITFSY 161
Query: 154 KAQI--YILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYF 211
+ + Y L E++TPF+N+ ++LD S + NG L + ++ RI +
Sbjct: 162 RPYLMYYGPTYLSWELSTPFLNIHYFLDKTNRTGSKFQMINGFILIVTFICVRIAWGWFS 221
Query: 212 FVHMAIHFDQVKEIFPLGFYSLLVVPPM-LAIMNVFWFWKIAKGLIRTLSKTRHS 265
AI + P + M L +N+FW K+ + R + S
Sbjct: 222 AYSTAIEILNHINVAPWALSLFYLAANMSLNCLNLFWVSKMIDAIRRRAHGEKKS 276
>sp|Q7TNV1|FA57B_MOUSE Protein FAM57B OS=Mus musculus GN=Fam57b PE=2 SV=2
Length = 275
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 136 VLHHG---LSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
VLHH L F + + GK ++ +L E++TPFV L L + + ++ N
Sbjct: 133 VLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVN 192
Query: 193 GVALFLGWLVARILLFIYFF----VHMAIHFDQVKEIFP----LGFYSLLVVPPMLAIMN 244
G + L +L R+LLF Y + H + V P LG +LL+ P
Sbjct: 193 GALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLSVPMAIPAHVNLG-AALLLAP------Q 245
Query: 245 VFWFWKIAKGLIR 257
++WF+ I +G R
Sbjct: 246 LYWFFLICRGACR 258
>sp|Q71RH2|FA57B_HUMAN Protein FAM57B OS=Homo sapiens GN=FAM57B PE=2 SV=1
Length = 274
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 136 VLHHG---LSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
VLHH L F + + GK ++ +L E++TPFV L L + + ++ N
Sbjct: 133 VLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVN 192
Query: 193 GVALFLGWLVARILLFIYFFVHMAIHFDQVKEIFPLGF-------YSLLVVPPMLAIMNV 245
G + L +L R+LLF Y + H PL +LL+ P +
Sbjct: 193 GALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAALLLAP------QL 246
Query: 246 FWFWKIAKGLIR 257
+WF+ I +G R
Sbjct: 247 YWFFLICRGACR 258
>sp|Q5UQN8|YL438_MIMIV Putative TLC domain-containing protein L438 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L438 PE=4 SV=1
Length = 200
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 104 LSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQI-YILMV 162
L+ +L +++ YFLSD +++ Y + Y +HH + + SI+ + + I Y+
Sbjct: 42 LTHGILMLTLVYFLSDYYLMIVKYNPKHNV-YFVHHFIGIVSIYFSYMKYYYLIKYLFAY 100
Query: 163 LFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHFDQV 222
L E++TPF+N+ G+ + I + +A F+ + V RI+ Y + + +
Sbjct: 101 LTFELSTPFLNIAIKYRNQGVYNK-CSIFSELAFFILFTVVRIIFGTYLWFVTSNTLSSI 159
Query: 223 KEIFPLGFYSLLVVPPMLAIMNVFWFWKIAK 253
+ +P + L+V+P +L +N +W+++I K
Sbjct: 160 E--YPYNY--LIVLPTILQFLNYWWYYRILK 186
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 12 NVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHA 71
NVS +K+ LVSV S II T K I S+ CFK Y + W
Sbjct: 1109 NVSENKEIVKLVSVLSTIINST---KKEVITSMDCFKRYNHI-------WQKGKEEAIKT 1158
Query: 72 FIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMIL 124
FI + LLS+ S+ Y + + ++ E V SI + +DL L
Sbjct: 1159 FITQSP-----LLSEFESQILYFQNLEQEINAEPEYVCVGSIALYTADLKFAL 1206
>sp|A6NGC4|TLCD2_HUMAN TLC domain-containing protein 2 OS=Homo sapiens GN=TLCD2 PE=2 SV=3
Length = 264
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 49 GYRKLSNEK-----KLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSS 103
G R+L + + +W N S H+ ++ T +L L L + D I+
Sbjct: 22 GLRRLPTPESAARDRWQWWNLCVSLAHSLLSGTGALLGLSLYPQMAADP-----IHGHPR 76
Query: 104 LSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVL 163
+ ++ +S+GYFL+D A +LW + + HH + + + A++SG + ++ L
Sbjct: 77 WALVLVAVSVGYFLADGADLLWNQTLGKTWDLLCHHLVVVSCLSTAVLSGHYVGFSMVSL 136
Query: 164 FTEITT 169
E+ +
Sbjct: 137 LLELNS 142
>sp|Q8TBR7|FA57A_HUMAN Protein FAM57A OS=Homo sapiens GN=FAM57A PE=1 SV=2
Length = 257
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 136 VLHHGLSMF---SIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
+ HH + +F + L ++ + E++TPFV+L L + + +Y N
Sbjct: 121 ITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVN 180
Query: 193 GVALFLGWLVARILLFIYFF----VHMAIHFDQVKEIFPLGFYSLLVVPPMLAIMNVFWF 248
G+ +L RILLF + + + QV F + FY V L ++WF
Sbjct: 181 GILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVP--FSIPFYC-NVANAFLVAPQIYWF 237
Query: 249 WKIAKGLIR 257
+ + +R
Sbjct: 238 CLLCRKAVR 246
>sp|O94275|MUG30_SCHPO Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug30 PE=1 SV=1
Length = 807
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 83 LLSDLFSEDYYDELIINRTSSLSETVLGIS---IGYFLSDLAMILWLYPALGGLEYVLHH 139
LL ++ D+YD+ I+ + S SE + S F+S +ILW + + + H+
Sbjct: 676 LLKNVCVYDFYDQNAISNSISESEPSMTASKYLCHSFVSKRKIILWFW------DLISHY 729
Query: 140 GLSMFSIFLALVSGKAQI 157
L M +FL V+G +I
Sbjct: 730 SLKMQKLFLIFVTGSDRI 747
>sp|Q9QUK3|CLN8_MOUSE Protein CLN8 OS=Mus musculus GN=Cln8 PE=2 SV=1
Length = 288
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVL 109
YR L+ ++K+ WN ++TA L+ LL + Y D+ + +
Sbjct: 53 YRSLAAKEKVFWNLAATRAVFGVQSTTAGLWALLGDPVL---YADKALGQQNWCWFHITT 109
Query: 110 GISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMV-LFTEIT 168
+F + + L+ L V+HH + + ++ +A Y+ M L E++
Sbjct: 110 ATGFFFFENVAVHLSNLFFRTFDLFLVVHHLFAFLGFLGSAINLRAGHYLAMTTLLLEMS 169
Query: 169 TPFVNLRWYLDVAGLKSSNIYICN 192
TPF + W L AG S + N
Sbjct: 170 TPFTCISWMLLKAGWSDSLFWKAN 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,631,110
Number of Sequences: 539616
Number of extensions: 3428703
Number of successful extensions: 10671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 10614
Number of HSP's gapped (non-prelim): 63
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)