Query 024545
Match_columns 266
No_of_seqs 160 out of 818
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 2.9E-43 6.2E-48 302.7 3.1 254 5-265 12-273 (281)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 2.2E-34 4.7E-39 240.8 18.1 193 60-253 1-198 (198)
3 smart00724 TLC TRAM, LAG1 and 100.0 8E-34 1.7E-38 239.6 18.7 200 56-259 1-204 (205)
4 KOG4474 Uncharacterized conser 100.0 6.8E-28 1.5E-32 203.2 12.2 195 52-255 37-233 (253)
5 KOG1607 Protein transporter of 99.6 2.4E-14 5.2E-19 125.8 18.8 214 48-263 76-293 (318)
6 COG5058 LAG1 Protein transport 99.4 8.2E-13 1.8E-17 114.7 10.9 207 52-261 147-369 (395)
7 KOG1608 Protein transporter of 69.6 84 0.0018 28.1 17.3 148 52-210 110-267 (374)
8 PF14018 DUF4234: Domain of un 48.8 85 0.0018 21.5 8.3 25 235-259 48-72 (75)
9 KOG3972 Predicted membrane pro 41.0 37 0.0008 28.6 3.6 59 2-70 44-113 (252)
10 KOG3966 p53-mediated apoptosis 38.0 2.3E+02 0.0051 25.1 8.1 74 190-264 95-181 (360)
11 PF12650 DUF3784: Domain of un 25.5 73 0.0016 23.1 2.7 34 48-81 24-57 (97)
12 COG3766 Predicted membrane pro 24.6 2E+02 0.0042 22.4 4.8 63 5-79 63-125 (133)
13 COG3311 AlpA Predicted transcr 23.8 48 0.001 22.9 1.3 27 164-190 6-32 (70)
14 PF11044 TMEMspv1-c74-12: Plec 21.8 1.9E+02 0.0041 18.1 3.4 19 246-264 19-37 (49)
15 PF14293 YWFCY: YWFCY protein 20.6 98 0.0021 20.7 2.2 16 235-250 18-33 (61)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.9e-43 Score=302.67 Aligned_cols=254 Identities=36% Similarity=0.564 Sum_probs=207.8
Q ss_pred hHHhhhccCCCCcchhhHHHHHHHHHHHHHHHHHH---HHHHhhhccccCCCCccccccee-eeehhHHHHHHHHHHHHH
Q 024545 5 LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLT---GIISVLCFKGYRKLSNEKKLEWN-NRGFSTFHAFIASTASLY 80 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~l~---~~~s~~~~k~y~~l~~~~k~~w~-~r~vS~vHaiv~~~~al~ 80 (266)
+.|.++++...+.+...+.....+++++.+.|.++ +..+....+.|+++++++|.+|| +|.+|++|+++++ ++|
T Consensus 12 ~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y 89 (281)
T KOG4561|consen 12 LTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS--SLY 89 (281)
T ss_pred ccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc--ccc
Confidence 35677888999999999999999999999999998 76666667899999999999999 9999999999998 788
Q ss_pred HHhhcCCCCccccccccccccChhhHHHHHHH--HHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhccchhhH
Q 024545 81 LLLLSDLFSEDYYDELIINRTSSLSETVLGIS--IGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIY 158 (266)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~GYfl~Dl~~~~~~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~ 158 (266)
+++.+|.+..|. ..++++.....-.-+ .||++.|+..+..+++..+|.+|++||+++..........|.++++
T Consensus 90 ~lf~~~~f~yD~-----~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~g~y~ 164 (281)
T KOG4561|consen 90 FLFGTPYFHYDK-----ATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGVGQYY 164 (281)
T ss_pred eeecCcccchhh-----hhccceeecceeeccccceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCcccee
Confidence 888777776432 222222222222222 4599999975555677889999999998883333333455779999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccccchhhHHhhh
Q 024545 159 ILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFVHMAIHF--DQVKEIFPLGFYSLLVV 236 (266)
Q Consensus 159 ~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~ 236 (266)
+..++++|+||||+|+||+++++|.|+|++|++||++++++|+++||+..|+++++++..+ ....+..|.....+++.
T Consensus 165 ~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (281)
T KOG4561|consen 165 AGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPLFLLGL 244 (281)
T ss_pred eeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877433 33445556566677888
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhccCCCC
Q 024545 237 PPMLAIMNVFWFWKIAKGLIRTLSKTRHS 265 (266)
Q Consensus 237 ~~~l~~LN~~Wf~~i~~~~~k~~~~~k~~ 265 (266)
+..++++|+|||+||+|+++|.+.+.|++
T Consensus 245 ~~~L~v~Nl~Wf~km~~ga~K~~~~~~~~ 273 (281)
T KOG4561|consen 245 NALLLVLNLYWFSKMVRGALKVLKKAKTS 273 (281)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999999999876554
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.2e-34 Score=240.82 Aligned_cols=193 Identities=32% Similarity=0.537 Sum_probs=158.8
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhccccC-ChhHHHH
Q 024545 60 EWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG-GLEYVLH 138 (266)
Q Consensus 60 ~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~~-~~~~l~H 138 (266)
||++|++|++||++++.+|++++..+|++.++. .|+...++++..+...++++|||++|+.++....++.+ ..+|++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 699999999999999999999999877433221 23345556778888999999999999999997554443 3899999
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHh-Cc-CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024545 139 HGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVA-GL-KSSNIYICNGVALFLGWLVARILLFIYFFVHMA 216 (266)
Q Consensus 139 H~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~-g~-~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~~~~ 216 (266)
|++++.++..++..+.+++++..++++|+||||+|+||++++. |. +++..+..|+++++++|+++|++.+|+..+..+
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888899999999999999999999999999999 77 688999999999999999999999999776666
Q ss_pred Hhhcccc--ccccchhhHHhhhhHHHHHhHHHHHHHHHH
Q 024545 217 IHFDQVK--EIFPLGFYSLLVVPPMLAIMNVFWFWKIAK 253 (266)
Q Consensus 217 ~~~~~~~--~~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~ 253 (266)
.+..+.+ +..+...+...+...++++||++|+++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5543311 112333345556678889999999999986
No 3
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=8e-34 Score=239.65 Aligned_cols=200 Identities=29% Similarity=0.437 Sum_probs=164.9
Q ss_pred ccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcccc--CCh
Q 024545 56 EKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL--GGL 133 (266)
Q Consensus 56 ~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~--~~~ 133 (266)
+|+.||++|++|.+||++++..+++.... +.+.. .++...+.++..+...++++|||++|+.++...++.. +++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~-~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPK-SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCc-ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47899999999999999999887765531 11111 1223567889999999999999999999998555433 379
Q ss_pred hHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024545 134 EYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARILLFIYFFV 213 (266)
Q Consensus 134 ~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri~~~~~~~~ 213 (266)
+|++||++++.++..+...+..+.+...++++|+||||+|+||++++.|.++++.+..|+.+++++|+.+|++.+|+..+
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~ 156 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888899999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhhcccc-c-cccchhhHHhhhhHHHHHhHHHHHHHHHHHHHhhh
Q 024545 214 HMAIHFDQVK-E-IFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTL 259 (266)
Q Consensus 214 ~~~~~~~~~~-~-~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~ 259 (266)
....+..+.. + ..+.......+...++++||++|+++|+|++.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766644321 1 12322344556778999999999999999999875
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.8e-28 Score=203.24 Aligned_cols=195 Identities=22% Similarity=0.237 Sum_probs=161.9
Q ss_pred CCCcccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccChhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 024545 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG 131 (266)
Q Consensus 52 ~l~~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~~~~~~~ 131 (266)
.++..+|.+|.|+.||++||++++.++.+++..+|.. .++.+...++.+..+.++|+|||+||+++|..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~-----~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEM-----VDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCccc-----ccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4666779999999999999999999999999977642 33456677889999999999999999999996543345
Q ss_pred ChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCC-CchhhhhHHHHHHHHHHHHHHHHHH
Q 024545 132 GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKS-SNIYICNGVALFLGWLVARILLFIY 210 (266)
Q Consensus 132 ~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~-s~~~~~n~~l~~~~Ff~~Ri~~~~~ 210 (266)
.+++++||++++.++..++.++++..++.+.+++|+||||+|+|.+++..|.++ ++.++++..++.++||++|++...+
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~ 191 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY 191 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence 689999999999999999999999889999999999999999999999999854 4469999999999999999998887
Q ss_pred HHHHHHHhhccccccccchh-hHHhhhhHHHHHhHHHHHHHHHHHH
Q 024545 211 FFVHMAIHFDQVKEIFPLGF-YSLLVVPPMLAIMNVFWFWKIAKGL 255 (266)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~l~~LN~~Wf~~i~~~~ 255 (266)
+.++...+.+. .|... .+...+...+.+.|.+-++++++.-
T Consensus 192 l~~~~i~~~~~----~~~~~~~~~~gg~~~l~~~n~~l~~rll~sd 233 (253)
T KOG4474|consen 192 LTYFLIANAPF----LHWYLKLFALGGLLCLAVINTVLTLRLLASD 233 (253)
T ss_pred EEEEEeeeCCC----cceehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 66554444322 22211 1334556899999999999999875
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.4e-14 Score=125.79 Aligned_cols=214 Identities=14% Similarity=0.237 Sum_probs=157.4
Q ss_pred cccCCCCcccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCcc-ccccc-cccccChhhHHHHHHHHHHHHHHHHHHHH
Q 024545 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED-YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW 125 (266)
Q Consensus 48 k~y~~l~~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~ 125 (266)
..++.-+++.+.+..+..=..+--..+.+.|++++..+|.+.+. ...++ .-.+.++..+..-.+-+||..+-++....
T Consensus 76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~ 155 (318)
T KOG1607|consen 76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFL 155 (318)
T ss_pred HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34444445555777888888889999999999999876765432 11111 11233566777788889999998888876
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHH
Q 024545 126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARI 205 (266)
Q Consensus 126 ~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri 205 (266)
..++++-.+|++||+++++....+...+....+.+...+++.|+++|.+.++++..+.+ .+-....++|+.+|+..|+
T Consensus 156 d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL 233 (318)
T KOG1607|consen 156 DEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL 233 (318)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 55666778999999999999888888777777888889999999999999999988775 3334556788999999998
Q ss_pred HHHHHHHHHHHH--hhccccccccchhhHHhhhhHHHHHhHHHHHHHHHHHHHhhhccCC
Q 024545 206 LLFIYFFVHMAI--HFDQVKEIFPLGFYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSKTR 263 (266)
Q Consensus 206 ~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~~~~k 263 (266)
...|.+....-. +...-+...+...+.......++++||++|++.|+|++.|.+++++
T Consensus 234 ~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g~ 293 (318)
T KOG1607|consen 234 IYYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRGM 293 (318)
T ss_pred HHHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888875432211 1111111123334556667789999999999999999999998443
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=99.44 E-value=8.2e-13 Score=114.70 Aligned_cols=207 Identities=14% Similarity=0.217 Sum_probs=145.7
Q ss_pred CCC-cccccceeeeehhHHHHHHHHHHHHHHHhhcCCC--Cccccccc-cccccChhhHHHHHHHHHHHHHHHHHHHH--
Q 024545 52 KLS-NEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLF--SEDYYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW-- 125 (266)
Q Consensus 52 ~l~-~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~s~GYfl~Dl~~~~~-- 125 (266)
.+. +++..++.++.-+..--.+++..|+|++-.+|.+ +++...|+ -.++.++.-+..-.+-.||.+....+..+
T Consensus 147 ~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLql 226 (395)
T COG5058 147 NVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQL 226 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeee
Confidence 444 4444789999999999999999999999887764 33222221 12345677788888899999999555443
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhhhHHHHHHHhCcCCCchhhhhHHHHHHHHHHHHH
Q 024545 126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVARI 205 (266)
Q Consensus 126 ~~~~~~~~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri 205 (266)
..++++-.+|+.||+++++.+..++..+....+.+....+++|+|||.+.+.++..|. .+-.....+|+..|+..|-
T Consensus 227 EkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~iF~iFv~~wIysRH 303 (395)
T COG5058 227 EKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATFIFGIFVFIWIYSRH 303 (395)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999888777666555555667889999999999999999876 3333444568888999997
Q ss_pred HHHHHHHHHHHHhhccc---cccccch-------hhHHhhhhHHHHHhHHHHHHHHHHHHHhhhcc
Q 024545 206 LLFIYFFVHMAIHFDQV---KEIFPLG-------FYSLLVVPPMLAIMNVFWFWKIAKGLIRTLSK 261 (266)
Q Consensus 206 ~~~~~~~~~~~~~~~~~---~~~~p~~-------~~~~~~~~~~l~~LN~~Wf~~i~~~~~k~~~~ 261 (266)
....-..+..+...... +-..+.+ ..+..+....++.+|+||+..|+|.+.|.+.+
T Consensus 304 yln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~ 369 (395)
T COG5058 304 YLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE 369 (395)
T ss_pred HHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66554444444432211 1111111 11233445689999999999999999999864
No 7
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=84 Score=28.13 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCCcccccceeeeehhHHHHHHHHHHHHHHHhhcCCCCccccccccccccC-----hhhHHHHHHHHHHHHHHHHHHHHh
Q 024545 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTS-----SLSETVLGISIGYFLSDLAMILWL 126 (266)
Q Consensus 52 ~l~~~~k~~w~~r~vS~vHaiv~~~~al~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~GYfl~Dl~~~~~~ 126 (266)
.+++-|..++|+.--=.+.-+.++++|.+++..++-..+.+ .++.+++ -..++....-++|.+.-+--....
T Consensus 110 hlSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~---~lW~~yPh~~msfq~Kffyi~QlaYwlHafPElYfQ 186 (374)
T KOG1608|consen 110 HLSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPT---SLWEGYPHRVMSFQMKFFYISQLAYWLHAFPELYFQ 186 (374)
T ss_pred hhhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChH---HHHhcCCCchhhHHHHHHHHHHHHHHHHHChHHHHH
Confidence 55666666666644334455677788888776433222211 1232221 224455566678877766555432
Q ss_pred ccccCC----hhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcCchhh-hHHHHHHHhCcCCCchhhhhHHHHHHHHH
Q 024545 127 YPALGG----LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFV-NLRWYLDVAGLKSSNIYICNGVALFLGWL 201 (266)
Q Consensus 127 ~~~~~~----~~~l~HH~~~~~~~~~~~~~~~~~~~~~~~ll~E~StpFl-~lr~~l~~~g~~~s~~~~~n~~l~~~~Ff 201 (266)
-.++++ ...++-|+.-+.+.+. .+. .-.+...+..|-.|-++ |+..+.--.+.+..+.+.+ +.++|+
T Consensus 187 K~Kkeeiprqlvyi~l~l~hI~gAYl---lnl-~rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fsl----wa~vF~ 258 (374)
T KOG1608|consen 187 KTKKEEIPRQLVYIILHLFHIAGAYL---LNL-NRLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSL----WAAVFV 258 (374)
T ss_pred HHhhhhccHHHHHHHHHHHHHHHHHH---Hhh-HHHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHH----HHHHHH
Confidence 112222 2344444444433222 111 12334445555555555 5555554455555544433 455688
Q ss_pred HHHHHHHHH
Q 024545 202 VARILLFIY 210 (266)
Q Consensus 202 ~~Ri~~~~~ 210 (266)
+.|+.....
T Consensus 259 l~Rl~tlii 267 (374)
T KOG1608|consen 259 LGRLGTLII 267 (374)
T ss_pred HHHHHHHHH
Confidence 889876554
No 8
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=48.76 E-value=85 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=19.8
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHhhh
Q 024545 235 VVPPMLAIMNVFWFWKIAKGLIRTL 259 (266)
Q Consensus 235 ~~~~~l~~LN~~Wf~~i~~~~~k~~ 259 (266)
...+...+.+++|.+|+.+.+-+.+
T Consensus 48 l~ilt~gi~~i~w~~k~~~~i~~~~ 72 (75)
T PF14018_consen 48 LSILTCGIYSIYWAYKLGNRINEEA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999998886654
No 9
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=41.05 E-value=37 Score=28.61 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=34.1
Q ss_pred hhhhHHhhhccCCCCcchhhHH-------HHHHHHHHHHHHHHHHHHH----HhhhccccCCCCcccccceeeeehhHHH
Q 024545 2 VSLLLSSMADNVSPSKQFYWLV-------SVFSGIIMCTIVYKLTGII----SVLCFKGYRKLSNEKKLEWNNRGFSTFH 70 (266)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-------~i~~s~~~~~~~~~l~~~~----s~~~~k~y~~l~~~~k~~w~~r~vS~vH 70 (266)
||||+||+ .|.+ ..++|..++...+++.|.. .++-.++-++.+++.|..=+.|+..-+.
T Consensus 44 vSLLisSl----------~W~~l~i~l~~~lifg~~vsV~~qE~fR~ayyklLkka~~GL~si~~d~~~~~s~h~lAyVs 113 (252)
T KOG3972|consen 44 VSLLISSL----------VWFGLSIVLPDDLIFGATVSVIAQELFRFAYYKLLKKAQEGLNSITEDGRLHNSRHMLAYVS 113 (252)
T ss_pred HHHHHHHH----------HHHheEccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCchhHHHHHHHh
Confidence 79999993 3322 2556777888888887752 2222234445555555555555544443
No 10
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=38.03 E-value=2.3e+02 Score=25.12 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc-ccchhh---HHhhh--hHHHHHhHHHHHHHHHHHHH
Q 024545 190 ICNGVALFLGWLVARILLFIYFFVHMAIHFDQVK-------EI-FPLGFY---SLLVV--PPMLAIMNVFWFWKIAKGLI 256 (266)
Q Consensus 190 ~~n~~l~~~~Ff~~Ri~~~~~~~~~~~~~~~~~~-------~~-~p~~~~---~~~~~--~~~l~~LN~~Wf~~i~~~~~ 256 (266)
.+||-++..+|.++--+..|..-. +....+..+ ++ .|.-.. ...+. -.+--+.|..||..|-..+.
T Consensus 95 ~wngg~~w~s~llf~~v~ipiL~~-~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~ 173 (360)
T KOG3966|consen 95 LWNGGAMWISFLLFWQVCIPILGL-FFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAM 173 (360)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHH-HHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888877777665311 111111111 11 111000 01111 13446789999999999999
Q ss_pred hhhccCCC
Q 024545 257 RTLSKTRH 264 (266)
Q Consensus 257 k~~~~~k~ 264 (266)
|+.+++.+
T Consensus 174 rv~k~~P~ 181 (360)
T KOG3966|consen 174 RVLKLPPP 181 (360)
T ss_pred HHhcCCCC
Confidence 99887654
No 11
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=25.52 E-value=73 Score=23.05 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=25.7
Q ss_pred cccCCCCcccccceeeeehhHHHHHHHHHHHHHH
Q 024545 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYL 81 (266)
Q Consensus 48 k~y~~l~~~~k~~w~~r~vS~vHaiv~~~~al~~ 81 (266)
.+|+.+|++||.+.|.+-.+-.-+......|+-.
T Consensus 24 aGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~ 57 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIIL 57 (97)
T ss_pred hhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988776666666665555533
No 12
>COG3766 Predicted membrane protein [Function unknown]
Probab=24.61 E-value=2e+02 Score=22.43 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=42.6
Q ss_pred hHHhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccccceeeeehhHHHHHHHHHHHH
Q 024545 5 LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASL 79 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~l~~~~s~~~~k~y~~l~~~~k~~w~~r~vS~vHaiv~~~~al 79 (266)
+-||.+.+....|+..|-.. +++.-.+.|...+.+.| +-++|++=+|+.+..+-+.++...|+
T Consensus 63 lassi~~s~sl~~~~~Wg~~---~~vvqLl~f~i~~~l~p---------~l~~~I~ngn~AaG~~~~~~al~vg~ 125 (133)
T COG3766 63 LASSISHSVSLPDYLAWGAI---ALVVQLLVFFIVRLLMP---------DLDEKIENGNVAAGFILGVAALAVGI 125 (133)
T ss_pred HHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHcC---------ccHHHHhcCcchHHHHHHHHHHHHHH
Confidence 56888899999999999765 44444444444333222 33568888888888888777776664
No 13
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=23.81 E-value=48 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHhcCchhhhHHHHHHHhCcCCCchhh
Q 024545 164 FTEITTPFVNLRWYLDVAGLKSSNIYI 190 (266)
Q Consensus 164 l~E~StpFl~lr~~l~~~g~~~s~~~~ 190 (266)
.++.+++++.++..+.++|+..+.+|+
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr 32 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYR 32 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHH
Confidence 357789999999999999998776664
No 14
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.76 E-value=1.9e+02 Score=18.09 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhccCCC
Q 024545 246 FWFWKIAKGLIRTLSKTRH 264 (266)
Q Consensus 246 ~Wf~~i~~~~~k~~~~~k~ 264 (266)
.|+-+.+-+-+|.+++||+
T Consensus 19 ~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 19 AWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4554444444455554443
No 15
>PF14293 YWFCY: YWFCY protein
Probab=20.55 E-value=98 Score=20.74 Aligned_cols=16 Identities=13% Similarity=0.723 Sum_probs=12.2
Q ss_pred hhhHHHHHhHHHHHHH
Q 024545 235 VVPPMLAIMNVFWFWK 250 (266)
Q Consensus 235 ~~~~~l~~LN~~Wf~~ 250 (266)
...+++.++|+||++-
T Consensus 18 ~iSI~~l~ih~Y~~CY 33 (61)
T PF14293_consen 18 AISILFLVIHFYWFCY 33 (61)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457788999999853
Done!