Query 024545
Match_columns 266
No_of_seqs 160 out of 818
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 10.1 2.4E+02 0.0081 14.9 4.2 26 184-209 2-27 (32)
2 2k9p_A Pheromone alpha factor 9.0 2.1E+02 0.0073 19.2 2.5 29 176-208 40-68 (80)
3 4ev6_A Magnesium transport pro 5.4 8.6E+02 0.029 20.4 5.3 27 222-248 306-333 (339)
4 1v54_M VIIIB, IX, cytochrome C 4.5 6.7E+02 0.023 14.9 3.1 37 15-52 5-42 (46)
5 4dkl_A MU-type opioid receptor 4.0 1.6E+03 0.055 18.6 7.2 18 245-262 439-456 (464)
6 3pbl_A D(3) dopamine receptor, 3.8 1.7E+03 0.059 18.6 7.1 14 205-218 412-425 (481)
7 1i11_A Transcription factor SO 3.6 2.4E+02 0.0081 18.3 0.1 22 42-63 35-56 (81)
8 1jb0_M Photosystem 1 reaction 3.6 6.3E+02 0.022 13.6 1.8 23 185-207 5-27 (31)
9 1ckt_A High mobility group 1 p 3.4 2E+02 0.0067 18.0 -0.5 21 42-62 34-54 (71)
10 2yvc_D Neprilysin; protein-pep 3.3 2.7E+02 0.0093 14.1 0.2 10 54-63 16-25 (26)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.09 E-value=2.4e+02 Score=14.89 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=17.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHH
Q 024545 184 KSSNIYICNGVALFLGWLVARILLFI 209 (266)
Q Consensus 184 ~~s~~~~~n~~l~~~~Ff~~Ri~~~~ 209 (266)
|++.+..+.|+.-..+|..+-...+-
T Consensus 2 khtiweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888778888776654433
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.04 E-value=2.1e+02 Score=19.23 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=19.3
Q ss_pred HHHHHhCcCCCchhhhhHHHHHHHHHHHHHHHH
Q 024545 176 WYLDVAGLKSSNIYICNGVALFLGWLVARILLF 208 (266)
Q Consensus 176 ~~l~~~g~~~s~~~~~n~~l~~~~Ff~~Ri~~~ 208 (266)
|++-+ .|.++++.+|+..++. -+.|....
T Consensus 40 ~lltk--krrspiF~lN~~~L~l--~iirs~l~ 68 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFL--IILHSALY 68 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHH--HHHHHHHH
Confidence 44434 6789999999987755 34565443
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.38 E-value=8.6e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=13.8
Q ss_pred cccc-ccchhhHHhhhhHHHHHhHHHHH
Q 024545 222 VKEI-FPLGFYSLLVVPPMLAIMNVFWF 248 (266)
Q Consensus 222 ~~~~-~p~~~~~~~~~~~~l~~LN~~Wf 248 (266)
.|.. .|.+++...+.+++..++-++||
T Consensus 306 mPel~~~~gy~~~l~~m~~~~~~~~~~f 333 (339)
T 4ev6_A 306 LPLANNPQGFWLVMALMVVIIMIFVYIF 333 (339)
T ss_dssp CTTSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHH
Confidence 4432 45565555455555555555554
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=4.54 E-value=6.7e+02 Score=14.89 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=21.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHH-HHHhhhccccCC
Q 024545 15 PSKQFYWLVSVFSGIIMCTIVYKLTG-IISVLCFKGYRK 52 (266)
Q Consensus 15 ~~~~~~~~~~i~~s~~~~~~~~~l~~-~~s~~~~k~y~~ 52 (266)
+++..+..+..+.++..|++.+++.+ ++..-+ +.|++
T Consensus 5 Pp~~~~s~~E~aigl~v~f~~~L~PagWVLshL-~~YKk 42 (46)
T 1v54_M 5 PAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHL-DNYKK 42 (46)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhcc
Confidence 45556666666667777777776653 333222 55543
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=4.03 E-value=1.6e+03 Score=18.60 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhccC
Q 024545 245 VFWFWKIAKGLIRTLSKT 262 (266)
Q Consensus 245 ~~Wf~~i~~~~~k~~~~~ 262 (266)
..|+.+=.|...|++-++
T Consensus 439 Y~~~~~~fR~~~~~lc~~ 456 (464)
T 4dkl_A 439 YAFLDENFKRCFREFCIP 456 (464)
T ss_dssp HHHHCHHHHHHHHHHHC-
T ss_pred HHHhhHHHHHHHHHHhcc
Confidence 345555566666655433
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=3.79 E-value=1.7e+03 Score=18.59 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 024545 205 ILLFIYFFVHMAIH 218 (266)
Q Consensus 205 i~~~~~~~~~~~~~ 218 (266)
+++.|+....++..
T Consensus 412 icw~P~~i~~~~~~ 425 (481)
T 3pbl_A 412 VCWLPFFLTHVLNT 425 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHh
Confidence 45677765554443
No 7
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=3.63 E-value=2.4e+02 Score=18.30 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHhhhccccCCCCcccccceee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNN 63 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (266)
++..+.+.|+.|++++|..|..
T Consensus 35 isk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHHHH
Confidence 5556667899999888776643
No 8
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=3.59 E-value=6.3e+02 Score=13.65 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=14.9
Q ss_pred CCchhhhhHHHHHHHHHHHHHHH
Q 024545 185 SSNIYICNGVALFLGWLVARILL 207 (266)
Q Consensus 185 ~s~~~~~n~~l~~~~Ff~~Ri~~ 207 (266)
++.++.+--.+++..++..|+.-
T Consensus 5 d~Qi~iAL~~Al~~~iLA~rLg~ 27 (31)
T 1jb0_M 5 DTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777788888754
No 9
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=3.38 E-value=2e+02 Score=18.03 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=14.9
Q ss_pred HHhhhccccCCCCccccccee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWN 62 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~ 62 (266)
++..+.+.|+.|++++|..|.
T Consensus 34 isk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 34 FSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH
Confidence 455666788899988776553
No 10
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=3.35 E-value=2.7e+02 Score=14.10 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=6.3
Q ss_pred Ccccccceee
Q 024545 54 SNEKKLEWNN 63 (266)
Q Consensus 54 ~~~~k~~w~~ 63 (266)
+|++|.+|+.
T Consensus 16 kpkkk~rws~ 25 (26)
T 2yvc_D 16 KPKKKQRXXX 25 (26)
T ss_pred Ccchhhcccc
Confidence 3566777763
Done!