Query 024545
Match_columns 266
No_of_seqs 160 out of 818
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 10:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024545.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024545hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 5.7 64 0.0046 19.1 0.1 22 42-63 33-54 (70)
2 d2lefa_ a.21.1.1 (A:) Lymphoid 4.7 54 0.0039 20.4 -0.8 23 42-64 33-55 (86)
3 d1ckta_ a.21.1.1 (A:) High mob 4.3 69 0.005 18.9 -0.5 22 42-63 34-55 (71)
4 d1v54m_ f.23.7.1 (M:) Mitochon 4.2 3.3E+02 0.024 14.6 2.9 26 15-40 5-30 (43)
5 d1hsma_ a.21.1.1 (A:) High mob 4.1 74 0.0054 19.2 -0.4 23 42-64 33-55 (79)
6 d2e74d2 f.23.12.1 (D:12-45) IS 3.8 3E+02 0.022 13.6 2.9 16 241-256 6-21 (34)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.8 4.1E+02 0.03 16.4 3.3 19 19-37 32-50 (100)
8 d1v54b2 f.17.2.1 (B:1-90) Mito 3.8 2.9E+02 0.021 16.9 2.5 16 66-81 65-80 (90)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.3 2.5E+02 0.018 17.9 1.8 11 69-79 84-94 (107)
10 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 3.1 89 0.0065 19.1 -0.8 22 42-63 33-54 (80)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.67 E-value=64 Score=19.14 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.4
Q ss_pred HHhhhccccCCCCcccccceee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNN 63 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (266)
++..+.+.|+.|++++|..|..
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~ 54 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYE 54 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 5556667899999988876644
No 2
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.65 E-value=54 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHhhhccccCCCCcccccceeee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNNR 64 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~r 64 (266)
+|..+.+.|+.|++++|..|...
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~ 55 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 66667788999999998887653
No 3
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.29 E-value=69 Score=18.86 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=16.1
Q ss_pred HHhhhccccCCCCcccccceee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNN 63 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (266)
++..+.+.|+.|++++|..|..
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~ 55 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4555667889999888876654
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.18 E-value=3.3e+02 Score=14.60 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=18.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHH
Q 024545 15 PSKQFYWLVSVFSGIIMCTIVYKLTG 40 (266)
Q Consensus 15 ~~~~~~~~~~i~~s~~~~~~~~~l~~ 40 (266)
+++..+.......++..|++.++...
T Consensus 5 P~~~~ls~~E~aigLt~~f~~~L~Pa 30 (43)
T d1v54m_ 5 PAKTPTSPKEQAIGLSVTFLSFLLPA 30 (43)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHccH
Confidence 45556677777778888877776643
No 5
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=4.12 E-value=74 Score=19.21 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=16.8
Q ss_pred HHhhhccccCCCCcccccceeee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNNR 64 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~r 64 (266)
++..+.+.|+.|++++|..|..+
T Consensus 33 i~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 33 VAKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHHhhHHhcCCHHHHHHHHHH
Confidence 45556678899999888877543
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.84 E-value=3e+02 Score=13.64 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHH
Q 024545 241 AIMNVFWFWKIAKGLI 256 (266)
Q Consensus 241 ~~LN~~Wf~~i~~~~~ 256 (266)
+.+|+.||-.+.-.+.
T Consensus 6 qfmnlltfgt~tg~al 21 (34)
T d2e74d2 6 QFMNLLAFGTVTGVAL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 4567777666554443
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.77 E-value=4.1e+02 Score=16.38 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 024545 19 FYWLVSVFSGIIMCTIVYK 37 (266)
Q Consensus 19 ~~~~~~i~~s~~~~~~~~~ 37 (266)
..+...+++.++.+...+.
T Consensus 32 v~~i~~~I~~~V~~~l~~~ 50 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYA 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333333
No 8
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.77 E-value=2.9e+02 Score=16.94 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 024545 66 FSTFHAFIASTASLYL 81 (266)
Q Consensus 66 vS~vHaiv~~~~al~~ 81 (266)
=..+.+++....|+..
T Consensus 65 WTiiP~lILi~ia~PS 80 (90)
T d1v54b2 65 WTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666665555543
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.27 E-value=2.5e+02 Score=17.89 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 024545 69 FHAFIASTASL 79 (266)
Q Consensus 69 vHaiv~~~~al 79 (266)
+-+++...+++
T Consensus 84 iP~lIL~~lai 94 (107)
T d3ehbb2 84 VPVLILVAIGA 94 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 10
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.09 E-value=89 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHhhhccccCCCCcccccceee
Q 024545 42 ISVLCFKGYRKLSNEKKLEWNN 63 (266)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (266)
++..+...|+.|++++|..|..
T Consensus 33 isk~~g~~W~~l~~eeK~~y~~ 54 (80)
T d1gt0d_ 33 ISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHH
Confidence 5666667899999888877654
Done!