Query 024546
Match_columns 266
No_of_seqs 201 out of 1472
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1.4E-46 3.1E-51 331.4 15.5 211 11-255 3-213 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 1.4E-21 3.1E-26 148.0 7.5 86 169-254 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 1.1E-20 2.4E-25 143.1 7.1 86 16-104 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 2.3E-13 5.1E-18 120.7 6.1 90 165-254 4-94 (243)
5 COG4095 Uncharacterized conser 99.3 7.1E-12 1.5E-16 93.8 5.9 83 166-251 4-86 (89)
6 COG4095 Uncharacterized conser 99.2 5.5E-11 1.2E-15 89.0 6.5 83 12-100 3-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.7 8.2E-07 1.8E-11 78.5 14.6 192 15-244 5-214 (220)
8 PF04193 PQ-loop: PQ loop repe 98.0 1.5E-05 3.2E-10 56.0 5.8 57 168-227 3-59 (61)
9 PF04193 PQ-loop: PQ loop repe 97.9 2.1E-05 4.5E-10 55.2 5.4 56 15-75 3-58 (61)
10 KOG3211 Predicted endoplasmic 97.4 0.0019 4.2E-08 56.1 10.5 195 14-254 31-227 (230)
11 KOG2913 Predicted membrane pro 96.6 0.023 5.1E-07 51.5 10.7 50 18-67 10-59 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.2 0.01 2.2E-07 52.6 5.9 50 167-219 4-53 (220)
13 PHA02246 hypothetical protein 95.6 0.78 1.7E-05 38.5 13.9 47 25-74 13-59 (192)
14 smart00679 CTNS Repeated motif 94.6 0.034 7.4E-07 33.6 2.6 25 31-55 2-26 (32)
15 PRK01021 lpxB lipid-A-disaccha 94.2 1.6 3.5E-05 44.2 14.6 83 168-256 141-223 (608)
16 PF03650 MPC: Uncharacterised 92.7 0.027 5.8E-07 45.1 -0.5 78 174-256 23-102 (119)
17 smart00679 CTNS Repeated motif 92.5 0.11 2.5E-06 31.3 2.3 28 184-211 2-29 (32)
18 PF03650 MPC: Uncharacterised 84.0 0.35 7.7E-06 38.7 0.2 63 42-105 39-101 (119)
19 KOG2913 Predicted membrane pro 83.6 2.6 5.5E-05 38.4 5.6 58 164-224 6-63 (260)
20 KOG1589 Uncharacterized conser 80.6 1.4 3E-05 34.8 2.3 58 195-252 43-102 (118)
21 KOG1589 Uncharacterized conser 78.6 0.75 1.6E-05 36.2 0.3 65 30-100 36-100 (118)
22 KOG3211 Predicted endoplasmic 71.3 5.2 0.00011 35.2 3.7 73 28-102 153-225 (230)
23 PHA02246 hypothetical protein 69.8 23 0.00049 29.9 7.0 34 26-59 118-151 (192)
24 PF10688 Imp-YgjV: Bacterial i 68.6 4.8 0.0001 33.9 2.9 64 164-242 90-153 (163)
25 KOG3145 Cystine transporter Cy 67.9 83 0.0018 29.5 10.8 94 168-264 265-370 (372)
26 PF07578 LAB_N: Lipid A Biosyn 65.6 15 0.00033 26.8 4.6 53 186-239 14-66 (72)
27 COG3952 Predicted membrane pro 58.9 30 0.00064 27.2 5.3 76 168-247 27-102 (113)
28 PF05602 CLPTM1: Cleft lip and 49.0 48 0.001 32.2 6.4 85 4-91 278-374 (438)
29 PF01034 Syndecan: Syndecan do 44.3 8.2 0.00018 27.6 0.2 20 237-256 22-41 (64)
30 PF06946 Phage_holin_5: Phage 39.5 69 0.0015 24.6 4.6 58 203-260 35-92 (93)
31 KOG2532 Permease of the major 30.2 1.9E+02 0.0042 28.3 7.4 95 9-105 257-358 (466)
32 PF07578 LAB_N: Lipid A Biosyn 30.1 77 0.0017 23.2 3.4 51 33-88 14-65 (72)
33 KOG2489 Transmembrane protein 25.0 7.3E+02 0.016 25.1 12.1 178 29-218 333-517 (592)
34 PF10688 Imp-YgjV: Bacterial i 24.5 32 0.0007 28.8 0.7 36 54-92 118-153 (163)
35 TIGR00341 conserved hypothetic 24.3 3.5E+02 0.0075 25.5 7.5 69 184-253 218-293 (325)
36 PF07857 DUF1632: CEO family ( 23.9 1.5E+02 0.0032 26.9 4.9 66 167-232 180-254 (254)
37 PF15102 TMEM154: TMEM154 prot 22.4 90 0.0019 26.0 2.9 29 227-255 60-88 (146)
38 KOG4314 Predicted carbohydrate 21.5 2.1E+02 0.0046 25.4 5.1 54 161-214 126-179 (290)
39 PF09796 QCR10: Ubiquinol-cyto 20.2 1.8E+02 0.004 20.7 3.7 41 3-43 3-45 (64)
40 PF01372 Melittin: Melittin; 20.2 1.6E+02 0.0036 17.0 2.8 15 30-44 10-24 (26)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1.4e-46 Score=331.45 Aligned_cols=211 Identities=45% Similarity=0.771 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHH
Q 024546 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (266)
Q Consensus 11 ~~~~~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~ 90 (266)
....+++|..|+++++++|++|+|+|+||+|+||+|++|..||+++++||.+|+.|| .+++|+..++.+|++|++++.
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 567646789999999999999
Q ss_pred HHHhhheeeecCcccccCcccccchhccccCccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhh
Q 024546 91 VYIILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFV 170 (266)
Q Consensus 91 ~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 170 (266)
+|+..|+.|+++|++. ........+. +..+++++....++++.+.+.+
T Consensus 81 ~Yi~~f~~ya~~k~~~------------------------------~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l 128 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTV------------------------------KIVLALVLGV--IGLIILLTLLLFHDPERRVSVL 128 (243)
T ss_pred HHHHHHheecCchhee------------------------------EeeehHHHHH--HHHHHHHHHHhcCCcceeeeee
Confidence 9999999999988852 0011111111 1122234444567778889999
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhheeEec
Q 024546 171 GLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYK 250 (266)
Q Consensus 171 G~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~~y~ 250 (266)
|.+|.+++++||+|||..+++|+|+||+|.||++++++.++++..|+.||++.+|.++.+||++|++++..|+.+|+.||
T Consensus 129 G~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~ 208 (243)
T KOG1623|consen 129 GIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYP 208 (243)
T ss_pred ehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024546 251 ETSGE 255 (266)
Q Consensus 251 ~~~~~ 255 (266)
+++.+
T Consensus 209 ~~~~~ 213 (243)
T KOG1623|consen 209 KTTEK 213 (243)
T ss_pred CCccc
Confidence 88744
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=1.4e-21 Score=147.99 Aligned_cols=86 Identities=37% Similarity=0.528 Sum_probs=83.8
Q ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhheeE
Q 024546 169 FVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFN 248 (266)
Q Consensus 169 ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~~ 248 (266)
++|.+|.+.++++++||++++++++|+||++++|+.++++.++||.+|+.||++.+|++++++|++|.+++..|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024546 249 YKETSG 254 (266)
Q Consensus 249 y~~~~~ 254 (266)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998874
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.83 E-value=1.1e-20 Score=143.06 Aligned_cols=86 Identities=27% Similarity=0.626 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHHHhh
Q 024546 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (266)
Q Consensus 16 ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y~~v 95 (266)
++|.+|.+.++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.|| ++.+| ++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999 78876 58999999999999999999
Q ss_pred heeeecCcc
Q 024546 96 FITYTEKDK 104 (266)
Q Consensus 96 ~~~y~~~~~ 104 (266)
|++|+++|+
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.41 E-value=2.3e-13 Score=120.68 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=85.4
Q ss_pred hhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccC-CcceecChhhHHHHHHHhh
Q 024546 165 SRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW-DPFIYVPNGIGTILGIVQL 243 (266)
Q Consensus 165 ~~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~-D~~i~~~N~~G~~l~~~ql 243 (266)
....++|..|.+.++++|.+|.++++|+.|+||+|+.+..|++++++||.+|+.||...+ |..++..|.+|+++..+++
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999887 8999999999999999999
Q ss_pred hheeEecCCCC
Q 024546 244 ALYFNYKETSG 254 (266)
Q Consensus 244 ~l~~~y~~~~~ 254 (266)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999988876
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=7.1e-12 Score=93.80 Aligned_cols=83 Identities=22% Similarity=0.205 Sum_probs=76.7
Q ss_pred hhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhh
Q 024546 166 RQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLAL 245 (266)
Q Consensus 166 ~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l 245 (266)
..+.+|.+|+.++.++| +||..+++|+||+++++++++.......++|+.||++++|.++...|.++..++..-+..
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~ 80 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFY 80 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHH
Confidence 36788999999999999 899999999999999999999999999999999999999999999999999999988777
Q ss_pred eeEecC
Q 024546 246 YFNYKE 251 (266)
Q Consensus 246 ~~~y~~ 251 (266)
...|..
T Consensus 81 kI~~~~ 86 (89)
T COG4095 81 KIKYIL 86 (89)
T ss_pred HHHHHH
Confidence 666543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=5.5e-11 Score=89.03 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHH
Q 024546 12 VLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 91 (266)
Q Consensus 12 ~~~~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~ 91 (266)
...+.+|..|.+.+...| +||..+++|+|+++++|..+|+.....+.+|+.|| ++.+| .|+...|.++..++..
T Consensus 3 ~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHH
Confidence 356788888888877665 89999999999999999999999999999999999 88875 7999999999999998
Q ss_pred HHhhheeee
Q 024546 92 YIILFITYT 100 (266)
Q Consensus 92 y~~v~~~y~ 100 (266)
-+....+|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 888777664
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.66 E-value=8.2e-07 Score=78.47 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHH--------hCCcccCCceEEEee----c
Q 024546 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY--------GTPLVSADNILVTTV----N 82 (266)
Q Consensus 15 ~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~Y--------G~~~l~~~~~~I~~~----N 82 (266)
.++|+...+.. ..+-+||+++.+|+||++++|+..+..-..+...|..| . ..++ ++.-.. |
T Consensus 5 ~~lG~~~~~~~---~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~---~~~~-~~~~~~~v~~e 77 (220)
T TIGR00951 5 QILGWGYVAAW---SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS---ITNE-FPLSSPGVTQN 77 (220)
T ss_pred HHHHHHHHHHH---HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh---hhhc-cccccCCCcHH
Confidence 45555544444 44679999999999999999999999999999999999 4 2222 222211 2
Q ss_pred hhhHHHHHHH-----HhhheeeecCcccccCcccccchhccccCccccccccccchhhHHHHHHHHHHHHHHHHHHHhhh
Q 024546 83 SIGAAFQLVY-----IILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVS 157 (266)
Q Consensus 83 ~~G~~l~~~y-----~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
-+-..++..- ..-+.+|.+..++++ +... ........+.++......
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s---------------------------~~~~-~~~~~~~~~~~~~~~~~~ 129 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVS---------------------------NPWI-LRILVALLACFATLLVAL 129 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccc---------------------------hhHH-HHHHHHHHHHHHHHHHHH
Confidence 2322222211 121223332222210 0010 001111111111111111
Q ss_pred hhccCcchhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccc-cCCcceecChhhHH
Q 024546 158 LQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGT 236 (266)
Q Consensus 158 ~~~~~~~~~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l-~~D~~i~~~N~~G~ 236 (266)
.....+.+....++.+-..+++.-+ +||++.-.|.||+++.|....+..+..++.-..-... .+|...+.--.++.
T Consensus 130 ~~~~~~l~~l~~l~~iki~is~iky---iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~ 206 (220)
T TIGR00951 130 LSPITPLAFVTMLSYIKVAVTLVKY---FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSS 206 (220)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHH---hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223445566777777777777766 8999999999999999999988888887666655553 36777776677777
Q ss_pred HHHHHhhh
Q 024546 237 ILGIVQLA 244 (266)
Q Consensus 237 ~l~~~ql~ 244 (266)
.++.+-+.
T Consensus 207 ~~n~i~~~ 214 (220)
T TIGR00951 207 LFNGLFAA 214 (220)
T ss_pred HHHHHHHH
Confidence 77665443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.02 E-value=1.5e-05 Score=55.97 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=49.9
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcc
Q 024546 168 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 227 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~ 227 (266)
+++|.++.++....+ +||+.+.+|+||++++++......+.++++|+.|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 466777777766666 899999999999999999999999999999999999877643
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.94 E-value=2.1e-05 Score=55.19 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCc
Q 024546 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN 75 (266)
Q Consensus 15 ~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~ 75 (266)
+++|+++.+ +...+.+||+++.+|+||++++|...+.....+..+|+.|. +..+++
T Consensus 3 ~~~g~i~~~---~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIV---LWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 345555444 44566799999999999999999999999999999999999 666543
No 10
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.39 E-value=0.0019 Score=56.13 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHHH
Q 024546 14 KDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 93 (266)
Q Consensus 14 ~~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y~ 93 (266)
...+|+.....++.. -+||+.+|+.+||++++|...+..-+++-..-+.|. .+.+..+.-+--..=+.++.+-+
T Consensus 31 sklLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vil 104 (230)
T KOG3211|consen 31 SKLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVIL 104 (230)
T ss_pred HhhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHHH
Confidence 445555544444444 589999999999999999999999999999999999 34443223333333344444433
Q ss_pred hhhee-eecCcccccCcccccchhccccCccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhh
Q 024546 94 ILFIT-YTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGL 172 (266)
Q Consensus 94 ~v~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~ 172 (266)
..+.. |+-..... ...++ -.+..+... .+......++-.
T Consensus 105 i~~if~f~~~~~~~------------------------------v~~l~-------~~~~v~~~~---~sk~~p~~~~~L 144 (230)
T KOG3211|consen 105 ILCIFHFSGQTVTV------------------------------VQFLG-------YIALVVSVL---ASKALPLWIITL 144 (230)
T ss_pred HHHHHHhccceeeh------------------------------hhHHH-------HHHHHHHHH---HHhhhhHHHHHH
Confidence 33332 22111110 10111 111111111 112222334444
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccc-cCCcceecChhhHHHHHHHhhhheeEecC
Q 024546 173 LSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM-NWDPFIYVPNGIGTILGIVQLALYFNYKE 251 (266)
Q Consensus 173 i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l-~~D~~i~~~N~~G~~l~~~ql~l~~~y~~ 251 (266)
..+...-+.-.|-++|+..-+|+|++..+++.....++-.+.--..+.+. ++|..++..=.+...++.+-..-...|++
T Consensus 145 ~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 145 AQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred HHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44444434457789999999999999999999999999999999999987 46887777666666666655555555655
Q ss_pred CCC
Q 024546 252 TSG 254 (266)
Q Consensus 252 ~~~ 254 (266)
+++
T Consensus 225 ~~~ 227 (230)
T KOG3211|consen 225 TAI 227 (230)
T ss_pred cCC
Confidence 543
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.61 E-value=0.023 Score=51.50 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHh
Q 024546 18 GIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (266)
Q Consensus 18 g~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG 67 (266)
..+|++.+++-..+-+||+.+..|+||++++|+.+.+.-......=+.|.
T Consensus 10 ~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~ 59 (260)
T KOG2913|consen 10 TILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF 59 (260)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH
Confidence 34455555555566799999999999999999999887777777777777
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.22 E-value=0.01 Score=52.56 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=44.6
Q ss_pred hhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhh
Q 024546 167 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 219 (266)
Q Consensus 167 ~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~Y 219 (266)
.+++|++..+.....+ +||+.+.+|+||++++++......++....|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567887777777766 8999999999999999999999999999999999
No 13
>PHA02246 hypothetical protein
Probab=95.57 E-value=0.78 Score=38.47 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=35.4
Q ss_pred HHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCC
Q 024546 25 AFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 74 (266)
Q Consensus 25 ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~ 74 (266)
++.......|+...+.|.|+.+++| -.|+-.......-..|- .+..|
T Consensus 13 ailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyN--lL~T~ 59 (192)
T PHA02246 13 AILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYN--LLLTD 59 (192)
T ss_pred HHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHH--HHhcC
Confidence 3444445689999999999999998 45666777778888898 45543
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.63 E-value=0.034 Score=33.60 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHhcCcCCccchhHHH
Q 024546 31 SPVPTFRRIIRNHSTEEFSGLPYVY 55 (266)
Q Consensus 31 Splp~~~~I~k~kst~~~s~~p~v~ 55 (266)
+-+||+.+++|+||++++|...+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHH
Confidence 5689999999999999999666553
No 15
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.16 E-value=1.6 Score=44.15 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=57.6
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhhee
Q 024546 168 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 247 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~ 247 (266)
..+|.+|-++-..=| +-|-. .-+++.-+.+|..--..+++.+++-+.|++.++|.-.++....|.+.-+--+ +.
T Consensus 141 ~~~G~~~q~~f~~Rf---~~Qw~-~se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl--~l 214 (608)
T PRK01021 141 HLIGCIGLTIFSLRF---FIQWF-YLEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANL--RI 214 (608)
T ss_pred HHHHHHHHHHHHHHH---HHHHH-HHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHH--HH
Confidence 455666665433333 34433 3344445677888888999999999999999999999999999998776665 34
Q ss_pred EecCCCCCC
Q 024546 248 NYKETSGEE 256 (266)
Q Consensus 248 ~y~~~~~~~ 256 (266)
++..+++++
T Consensus 215 i~~~~~~~~ 223 (608)
T PRK01021 215 AYKEARRKP 223 (608)
T ss_pred HHhhccccc
Confidence 454444443
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=92.73 E-value=0.027 Score=45.10 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhcccc--CCcceecChhhHHHHHHHhhhheeEecC
Q 024546 174 SCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKE 251 (266)
Q Consensus 174 ~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~--~D~~i~~~N~~G~~l~~~ql~l~~~y~~ 251 (266)
|.++.-.+-++++.++ +|..|.++..+..+.++.+.+|.-|++.+ +|+.+...|+.-...+..|+.=+..|..
T Consensus 23 aP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 23 APVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred hhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444445554 68999999999999999999999999987 5888888999999999999998888876
Q ss_pred CCCCC
Q 024546 252 TSGEE 256 (266)
Q Consensus 252 ~~~~~ 256 (266)
.+++|
T Consensus 98 ~~~~~ 102 (119)
T PF03650_consen 98 SQKKE 102 (119)
T ss_pred hcCch
Confidence 66554
No 17
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.50 E-value=0.11 Score=31.26 Aligned_cols=28 Identities=29% Similarity=0.110 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhcCccceechhHHHHHHH
Q 024546 184 SPLFIINLVIQTKSVEFMPFYLSLSTFL 211 (266)
Q Consensus 184 sPL~~i~~virtks~~~~~~~~~~~~~~ 211 (266)
+-+||+.+.+|+||++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4479999999999999999887765544
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=83.95 E-value=0.35 Score=38.71 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=53.2
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHHHhhheeeecCccc
Q 024546 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKK 105 (266)
Q Consensus 42 ~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y~~v~~~y~~~~~~ 105 (266)
+|..|.+|..+-.+..+.+.+|+.|++ .+++.++.++.+|.+-...+.+++.=++.|....++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~ 101 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKK 101 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 588999999999999999999999996 556666789999999999999999877777554443
No 19
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=83.63 E-value=2.6 Score=38.36 Aligned_cols=58 Identities=16% Similarity=0.001 Sum_probs=46.2
Q ss_pred chhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccC
Q 024546 164 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNW 224 (266)
Q Consensus 164 ~~~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~ 224 (266)
++...+.|.+..+.....+ .||+.+..|+|+.+++|+...+...+..+.=..|..+.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3445566666666666666 799999999999999999999888888888888877765
No 20
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.56 E-value=1.4 Score=34.77 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=50.8
Q ss_pred cCccceechhHHHHHHHHHHHHhhhcccc--CCcceecChhhHHHHHHHhhhheeEecCC
Q 024546 195 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVPNGIGTILGIVQLALYFNYKET 252 (266)
Q Consensus 195 tks~~~~~~~~~~~~~~n~~lW~~YG~l~--~D~~i~~~N~~G~~l~~~ql~l~~~y~~~ 252 (266)
.|..|.++....++-+..+++|+-|.+.+ +|+.+.-.|.+=.+-+..|+.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889899999999999999999987 68899999999999999999988888433
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=0.75 Score=36.20 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=54.0
Q ss_pred hccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHHHhhheeee
Q 024546 30 VSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYT 100 (266)
Q Consensus 30 ~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y~~v~~~y~ 100 (266)
.+++.++ .|..|.+|..-..........|..|++ ++++.++.++.+|.+=...+.+++.=.+.|.
T Consensus 36 ~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 36 IAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred eecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 678889999999999999999999996 5666677899999999999999998877774
No 22
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=71.28 E-value=5.2 Score=35.21 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=56.6
Q ss_pred HHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHHHhhheeeecC
Q 024546 28 LFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 102 (266)
Q Consensus 28 m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y~~v~~~y~~~ 102 (266)
...|-++|+.+-+|+|++|..|.+.....+..|..=+.+. ....+|+.+...-.+..+++..-..-..+|.++
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~ 225 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWST 225 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3467789999999999999999999999999999999999 677677777766666666665555444444433
No 23
>PHA02246 hypothetical protein
Probab=69.82 E-value=23 Score=29.91 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=26.1
Q ss_pred HHHHhccHHHHHHHHHhcCcCCccchhHHHHHHH
Q 024546 26 FGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLN 59 (266)
Q Consensus 26 i~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n 59 (266)
+...++.+||+.+-+|+|+.|+.|..-++....+
T Consensus 118 ~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~G 151 (192)
T PHA02246 118 ITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLG 151 (192)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHH
Confidence 3344567999999999999999998877654443
No 24
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=68.57 E-value=4.8 Score=33.88 Aligned_cols=64 Identities=6% Similarity=-0.029 Sum_probs=43.6
Q ss_pred chhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHh
Q 024546 164 FSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQ 242 (266)
Q Consensus 164 ~~~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~q 242 (266)
+.-.+.++.++++....... . .++++ +=+..++++.+|..|++..++++...-|......+...
T Consensus 90 ~g~~~~l~~~as~~~t~a~f----------~---~~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 90 QGWIELLPYAASVLGTIALF----------M---LDGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHH----------h---cCchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 44567777776665443221 1 11222 22567999999999999999999888888888766655
No 25
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=67.94 E-value=83 Score=29.46 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=49.5
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHH----HHHHHHHHHHhhhccccCCcceecChhhH-------H
Q 024546 168 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLS----LSTFLMSTSFLAYGIMNWDPFIYVPNGIG-------T 236 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~----~~~~~n~~lW~~YG~l~~D~~i~~~N~~G-------~ 236 (266)
..+..+=...+.+=| .||...-.+.||+++-|..=. -.+.++-+...+-..-.+|+--+..|--- .
T Consensus 265 ~~~syiKl~mTliKY---iPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi 341 (372)
T KOG3145|consen 265 NNLSYIKLAMTLIKY---IPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSI 341 (372)
T ss_pred HHHHHHHHHHHHHHh---hhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHH
Confidence 334445555566666 688888999999998764322 22334434444444444444444444332 2
Q ss_pred HHHHHhhhh-eeEecCCCCCCCCCCcccc
Q 024546 237 ILGIVQLAL-YFNYKETSGEESRDPLIVS 264 (266)
Q Consensus 237 ~l~~~ql~l-~~~y~~~~~~~~~~~~~~~ 264 (266)
++.++-+.- |..||+++..+.++|...+
T Consensus 342 ~FdiiFm~QhyVly~~~~~~~s~y~g~~~ 370 (372)
T KOG3145|consen 342 FFDIIFMMQHYVLYPRGHVLKSEYPGEDS 370 (372)
T ss_pred HHHHHHHhhheeEeccccccCCCCCCCCC
Confidence 333333333 4455555544566666554
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=65.61 E-value=15 Score=26.82 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHH
Q 024546 186 LFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILG 239 (266)
Q Consensus 186 L~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~ 239 (266)
+-|-...-|+| -+.+|..--..+.+.+++-++||+.++|...++....|.+..
T Consensus 14 ~~QW~~SEk~k-~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 14 IVQWIYSEKAK-KSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred HHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 34434443444 446687777889999999999999999998777777776643
No 27
>COG3952 Predicted membrane protein [Function unknown]
Probab=58.92 E-value=30 Score=27.25 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=55.9
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhhee
Q 024546 168 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYF 247 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~ 247 (266)
..+|..+..+-..=| +-| .-..+.++.+.+|.+---++++.+.+-+.|.+-++|..-+..|+.|.+..+.-+-+..
T Consensus 27 ~LiG~~g~~lFt~Rf---~VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ 102 (113)
T COG3952 27 KLIGFSGQLLFTGRF---VVQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLII 102 (113)
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHH
Confidence 345555544333222 222 4456777888899888889999999999999999998877889999998887765544
No 28
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=49.02 E-value=48 Score=32.20 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=59.8
Q ss_pred cccccchHHHHHHHH-----------HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCccc
Q 024546 4 TITYQALTVLKDAVG-----------IAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVS 72 (266)
Q Consensus 4 ~~t~q~~~~~~~ivg-----------~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~ 72 (266)
|.++.+.|.++.++- .+..+-++.=|++-=-++.-++|+||-+++|.-..+.-+++.+.=+.|= +.
T Consensus 278 g~~~~~~d~~K~~~~etn~~lL~~t~~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D 354 (438)
T PF05602_consen 278 GFSEKDIDEIKRIFLETNPYLLALTFVVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LD 354 (438)
T ss_pred CCCcccHHHHHHHHhcCCHhhhHHHHHHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---Ee
Confidence 566666666554432 2334445555666677888999999999999887777777666666666 33
Q ss_pred C-CceEEEeechhhHHHHHH
Q 024546 73 A-DNILVTTVNSIGAAFQLV 91 (266)
Q Consensus 73 ~-~~~~I~~~N~~G~~l~~~ 91 (266)
+ ..+.|..++++|++++++
T Consensus 355 ~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 355 NETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred CCCcEEeehHhHhHHhHhhe
Confidence 3 357899999999999874
No 29
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=44.27 E-value=8.2 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=0.8
Q ss_pred HHHHHhhhheeEecCCCCCC
Q 024546 237 ILGIVQLALYFNYKETSGEE 256 (266)
Q Consensus 237 ~l~~~ql~l~~~y~~~~~~~ 256 (266)
++..+-++++.+|+-++++|
T Consensus 22 ll~ailLIlf~iyR~rkkdE 41 (64)
T PF01034_consen 22 LLFAILLILFLIYRMRKKDE 41 (64)
T ss_dssp ---------------S----
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34455677889998888887
No 30
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=39.45 E-value=69 Score=24.61 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhheeEecCCCCCCCCCC
Q 024546 203 FYLSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETSGEESRDP 260 (266)
Q Consensus 203 ~~~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~ 260 (266)
+.|.+...+..++=.++..+.+|..+..--..|.+.++.--.++=.+.+++++..||.
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~ 92 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDD 92 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCC
Confidence 4445555555555556666666665544445688888888888777766655555543
No 31
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=30.23 E-value=1.9e+02 Score=28.29 Aligned_cols=95 Identities=15% Similarity=0.285 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHH-HH--HhcCcCCccchhHHHHHHHHHHHHHHhCCcccCC----ceEEEee
Q 024546 9 ALTVLKDAVGIAGNIFAFGLFVSPVPTFRR-II--RNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD----NILVTTV 81 (266)
Q Consensus 9 ~~~~~~~ivg~~a~i~ti~m~~Splp~~~~-I~--k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~~----~~~I~~~ 81 (266)
++....-.+...+.-.+..+++.-.|+..+ +. .-|++|=++.+|++........+-.-.= .++.+ -...-.-
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIF 335 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHH
Confidence 344555666667777777777778888765 33 3567888899999998887777665551 11111 0112445
Q ss_pred chhhHHHHHHHHhhheeeecCccc
Q 024546 82 NSIGAAFQLVYIILFITYTEKDKK 105 (266)
Q Consensus 82 N~~G~~l~~~y~~v~~~y~~~~~~ 105 (266)
|.++.....+.+.. .-|.++..+
T Consensus 336 n~i~~~~~ai~l~~-l~~~~~~~~ 358 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLV-LAFTSDEHR 358 (466)
T ss_pred HhHHHHHHHHHHHe-eeecCCCcc
Confidence 88888777766655 345444333
No 32
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=30.10 E-value=77 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCcCCccchhH-HHHHHHHHHHHHHhCCcccCCceEEEeechhhHHH
Q 024546 33 VPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (266)
Q Consensus 33 lp~~~~I~k~kst~~~s~~p~-v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l 88 (266)
+-|...-.|+|. ..-|..| ...+.++.+=+.|| +.++| +..+...++|.+.
T Consensus 14 ~~QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 344444444443 3333444 66899999999999 77765 4444455555544
No 33
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=25.02 E-value=7.3e+02 Score=25.07 Aligned_cols=178 Identities=14% Similarity=0.031 Sum_probs=98.9
Q ss_pred HhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhCCcccC-CceEEEeechhhHHHHHHHHhhheeeecCccccc
Q 024546 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSA-DNILVTTVNSIGAAFQLVYIILFITYTEKDKKVS 107 (266)
Q Consensus 29 ~~Splp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~~~l~~-~~~~I~~~N~~G~~l~~~y~~v~~~y~~~~~~~~ 107 (266)
|++-=-++-=+.|+||-+++|.-..+..+++.+.=..|= +.+ .++.|..+-++|+++++.=+---++-.-+++..
T Consensus 333 fLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~- 408 (592)
T KOG2489|consen 333 FLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGL- 408 (592)
T ss_pred HHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEEEEecccc-
Confidence 344444555678899999999999888888888888887 443 257788889999988764332211111111110
Q ss_pred CcccccchhccccCccccccccccchhh------HHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhhhHHHHHHHH
Q 024546 108 YPFSHMHLVYCSGSAICSVNQFFPLCSR------QVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISM 181 (266)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~i~~~~si~~ 181 (266)
..+-.++++..-.+.-| +-++ ..+.++.++.-+++ +-.+|..+......-..-++-.+.+.+-.+=
T Consensus 409 -i~gv~pRl~f~dkgsys------E~~Tk~yD~~A~kYLs~~L~PL~v-g~aVYSLlY~~hKsWYSWvLn~l~~~vy~FG 480 (592)
T KOG2489|consen 409 -IPGVLPRLSFSDKGSYS------ESKTKEYDDQAMKYLSYLLFPLLV-GGAVYSLLYVEHKSWYSWVLNSLYNGVYAFG 480 (592)
T ss_pred -ccccccccccccccccc------ccchhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcccccHHHHHHHHHHhHHHHHH
Confidence 00000111111001111 1111 11233333221111 1112333344444444555655555554444
Q ss_pred hhhhHHHHHHHHhcCccceechhHHHHHHHHHHHHhh
Q 024546 182 FASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLA 218 (266)
Q Consensus 182 ~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~lW~~ 218 (266)
|.--+||+---.|-||++.+|..+..--++|.++==+
T Consensus 481 Fi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDl 517 (592)
T KOG2489|consen 481 FIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDL 517 (592)
T ss_pred HHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 5555899999999999999999999888888875333
No 34
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=24.47 E-value=32 Score=28.85 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCcccCCceEEEeechhhHHHHHHH
Q 024546 54 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 92 (266)
Q Consensus 54 v~~~~n~~lW~~YG~~~l~~~~~~I~~~N~~G~~l~~~y 92 (266)
...+.++.+|+.|+ ++.++ ++....|......+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHHH
Confidence 46889999999999 77775 46666777666665543
No 35
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=24.25 E-value=3.5e+02 Score=25.50 Aligned_cols=69 Identities=7% Similarity=-0.089 Sum_probs=37.3
Q ss_pred hhHHHHHHHHhcCccceechh-------HHHHHHHHHHHHhhhccccCCcceecChhhHHHHHHHhhhheeEecCCC
Q 024546 184 SPLFIINLVIQTKSVEFMPFY-------LSLSTFLMSTSFLAYGIMNWDPFIYVPNGIGTILGIVQLALYFNYKETS 253 (266)
Q Consensus 184 sPL~~i~~virtks~~~~~~~-------~~~~~~~n~~lW~~YG~l~~D~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 253 (266)
+.........+.++ +.++-- |..+..--++-|.-+....+-...+..|.+|..++..-...+.-|++.+
T Consensus 218 aG~AGalsl~~~~s-~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 218 AGIAGILSLSSGIL-ESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HHHHHHHHHhhccc-cchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 33444444445444 344322 2233333344444444445556677889999998776655555555444
No 36
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.91 E-value=1.5e+02 Score=26.86 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=39.7
Q ss_pred hhhhhhhHHHHHHHHhhhhHHHHHHHHhcC------ccceechhHH--HH-HHHHHHHHhhhccccCCcceecCh
Q 024546 167 QMFVGLLSCAALISMFASPLFIINLVIQTK------SVEFMPFYLS--LS-TFLMSTSFLAYGIMNWDPFIYVPN 232 (266)
Q Consensus 167 ~~ilG~i~~~~si~~~~sPL~~i~~virtk------s~~~~~~~~~--~~-~~~n~~lW~~YG~l~~D~~i~~~N 232 (266)
++++|.+.++++=++|++-+.=+.-+.++. |.++++...+ .. .+.+.+.+.+|.+..+|.+-+-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 578999999999988887554444433333 3455543322 22 334445566777777666655554
No 37
>PF15102 TMEM154: TMEM154 protein family
Probab=22.41 E-value=90 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred ceecChhhHHHHHHHhhhheeEecCCCCC
Q 024546 227 FIYVPNGIGTILGIVQLALYFNYKETSGE 255 (266)
Q Consensus 227 ~i~~~N~~G~~l~~~ql~l~~~y~~~~~~ 255 (266)
.|++|-+++.++-+.-+.+..+|+|++.+
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 46778777766666666666666555544
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=21.49 E-value=2.1e+02 Score=25.41 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=43.8
Q ss_pred cCcchhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcCccceechhHHHHHHHHHH
Q 024546 161 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMST 214 (266)
Q Consensus 161 ~~~~~~~~ilG~i~~~~si~~~~sPL~~i~~virtks~~~~~~~~~~~~~~n~~ 214 (266)
.+.+...+++|..|.+.+-.|-+--=-..++++-+-|-++.+..++..+++|-.
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~ 179 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLC 179 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 466777899999999988887766566778999999999988888887777743
No 39
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=20.21 E-value=1.8e+02 Score=20.69 Aligned_cols=41 Identities=32% Similarity=0.281 Sum_probs=27.9
Q ss_pred ccccccchHHHHHHHHHHH--HHHHHHHHhccHHHHHHHHHhc
Q 024546 3 LTITYQALTVLKDAVGIAG--NIFAFGLFVSPVPTFRRIIRNH 43 (266)
Q Consensus 3 ~~~t~q~~~~~~~ivg~~a--~i~ti~m~~Splp~~~~I~k~k 43 (266)
-|+|-+......-..+..| ..+.+..|.|.+|.+++=+=+|
T Consensus 3 ~git~~~~~~~~p~~a~wG~aa~~~v~~f~~~vPr~q~dil~K 45 (64)
T PF09796_consen 3 GGITPKTLTRYGPNLALWGGAAGAAVLFFTSGVPRFQRDILQK 45 (64)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHh
Confidence 4677766665555555543 5566788999999998765444
No 40
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.16 E-value=1.6e+02 Score=17.00 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.3
Q ss_pred hccHHHHHHHHHhcC
Q 024546 30 VSPVPTFRRIIRNHS 44 (266)
Q Consensus 30 ~Splp~~~~I~k~ks 44 (266)
.+.+|++..++|+|.
T Consensus 10 a~~LP~lISWIK~kr 24 (26)
T PF01372_consen 10 ATGLPTLISWIKNKR 24 (26)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHh
Confidence 456899999999874
Done!