Query 024546
Match_columns 266
No_of_seqs 201 out of 1472
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 17.3 3.2E+02 0.011 24.1 7.3 29 168-196 351-379 (445)
2 4djk_A Probable glutamate/gamm 8.7 7.3E+02 0.025 22.2 7.0 24 168-191 368-391 (511)
3 3bkd_A Transmembrane domain of 6.1 1E+02 0.0034 17.0 -0.2 14 224-237 2-15 (26)
4 2nr1_A NR1 M2, M2; receptor, s 6.0 1.2E+02 0.0041 17.1 0.0 14 211-224 9-22 (27)
5 3qrx_B Melittin; calcium-bindi 5.1 3.9E+02 0.013 14.6 1.7 15 30-44 10-24 (26)
6 3bz1_X Photosystem II PSBX pro 4.6 3.8E+02 0.013 17.2 1.7 21 198-218 7-27 (50)
7 2ljb_A M2 protein, BM2 protein 4.1 1.9E+02 0.0065 17.1 -0.0 15 223-237 5-19 (35)
8 2b2h_A AMT-1, ammonium transpo 3.9 4.9E+02 0.017 23.8 2.6 30 193-222 31-60 (399)
9 3ug9_A Archaeal-type opsin 1, 3.7 1.3E+03 0.046 20.3 5.3 14 54-67 230-243 (333)
10 4djk_A Probable glutamate/gamm 3.5 1.8E+03 0.061 19.4 6.3 97 7-105 360-472 (511)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.34 E-value=3.2e+02 Score=24.11 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=14.2
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHHHHhcC
Q 024546 168 MFVGLLSCAALISMFASPLFIINLVIQTK 196 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~virtk 196 (266)
+.+..+++......|..+.....+..|++
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444445555556655555544444433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=8.71 E-value=7.3e+02 Score=22.16 Aligned_cols=24 Identities=4% Similarity=0.019 Sum_probs=12.0
Q ss_pred hhhhhhHHHHHHHHhhhhHHHHHH
Q 024546 168 MFVGLLSCAALISMFASPLFIINL 191 (266)
Q Consensus 168 ~ilG~i~~~~si~~~~sPL~~i~~ 191 (266)
+.+..++++.....|..+...+.+
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~~~~ 391 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIGYIV 391 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566655444333
No 3
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=6.14 E-value=1e+02 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.0
Q ss_pred CCcceecChhhHHH
Q 024546 224 WDPFIYVPNGIGTI 237 (266)
Q Consensus 224 ~D~~i~~~N~~G~~ 237 (266)
+|..+..+|.+|.+
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57778888998874
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.02 E-value=1.2e+02 Score=17.05 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.9
Q ss_pred HHHHHHhhhccccC
Q 024546 211 LMSTSFLAYGIMNW 224 (266)
Q Consensus 211 ~n~~lW~~YG~l~~ 224 (266)
+.+.+|+.+|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678888887653
No 5
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=5.08 E-value=3.9e+02 Score=14.58 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=11.7
Q ss_pred hccHHHHHHHHHhcC
Q 024546 30 VSPVPTFRRIIRNHS 44 (266)
Q Consensus 30 ~Splp~~~~I~k~ks 44 (266)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 346799999999875
No 6
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=4.62 E-value=3.8e+02 Score=17.24 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=13.3
Q ss_pred cceechhHHHHHHHHHHHHhh
Q 024546 198 VEFMPFYLSLSTFLMSTSFLA 218 (266)
Q Consensus 198 ~~~~~~~~~~~~~~n~~lW~~ 218 (266)
..-+...+++.+++.+++|..
T Consensus 7 ~~l~~mTpSL~NFl~SlvaG~ 27 (50)
T 3bz1_X 7 SLLLTITPSLKGFFIGLLSGA 27 (50)
T ss_dssp ----CCCHHHHHHHHHHHHHH
T ss_pred hHHhhcCHHHHHHHHHHHHHH
Confidence 333455678889999888864
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=4.10 E-value=1.9e+02 Score=17.10 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.5
Q ss_pred cCCcceecChhhHHH
Q 024546 223 NWDPFIYVPNGIGTI 237 (266)
Q Consensus 223 ~~D~~i~~~N~~G~~ 237 (266)
.+|..++.+|.+|.+
T Consensus 5 SsDplviaA~IigiL 19 (35)
T 2ljb_A 5 SSDPLVVAASIIGIL 19 (35)
T ss_dssp -CCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 468888888999874
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=3.93 E-value=4.9e+02 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=20.0
Q ss_pred HhcCccceechhHHHHHHHHHHHHhhhccc
Q 024546 193 IQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 222 (266)
Q Consensus 193 irtks~~~~~~~~~~~~~~n~~lW~~YG~l 222 (266)
.|+||+-++=..-.....+.++.|..+|.-
T Consensus 31 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 60 (399)
T 2b2h_A 31 VRRKNAVNMIALSFISLIITVLLWIFYGYS 60 (399)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665555556677777888877664
No 9
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=3.67 E-value=1.3e+03 Score=20.31 Aligned_cols=14 Identities=14% Similarity=-0.144 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHh
Q 024546 54 VYALLNCLITMWYG 67 (266)
Q Consensus 54 v~~~~n~~lW~~YG 67 (266)
.+..+...+|.+|-
T Consensus 230 ~Lr~~vlV~WaIYP 243 (333)
T 3ug9_A 230 GMAWLFFVSWGMFP 243 (333)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34455566777665
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=3.54 E-value=1.8e+03 Score=19.38 Aligned_cols=97 Identities=5% Similarity=-0.043 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhH------HHHHHHHHHHHHHhCCcc---------
Q 024546 7 YQALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPY------VYALLNCLITMWYGTPLV--------- 71 (266)
Q Consensus 7 ~q~~~~~~~ivg~~a~i~ti~m~~Splp~~~~I~k~kst~~~s~~p~------v~~~~n~~lW~~YG~~~l--------- 71 (266)
+++.+...+.+..++++.....|..+...+.+.+|++...+-+.-.- .....-+.+|..+. ..
T Consensus 360 ~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~ 437 (511)
T 4djk_A 360 GGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMA--FIVSFLPPDNI 437 (511)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHH--HHHTTCCCSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHH--HHeeeeCCccc
Q ss_pred -cCCceEEEeechhhHHHHHHHHhhheeeecCccc
Q 024546 72 -SADNILVTTVNSIGAAFQLVYIILFITYTEKDKK 105 (266)
Q Consensus 72 -~~~~~~I~~~N~~G~~l~~~y~~v~~~y~~~~~~ 105 (266)
..+++.-...-..+.++-.....+.++..+++.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 472 (511)
T 4djk_A 438 QGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGK 472 (511)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Done!