Query 024546
Match_columns 266
No_of_seqs 201 out of 1472
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 10:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024546.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024546hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 14.8 75 0.0055 17.8 2.9 17 186-202 18-34 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 5.6 89 0.0065 18.2 0.7 17 186-202 17-33 (45)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 4.5 1.2E+02 0.0088 19.8 1.0 11 246-256 40-50 (91)
4 d1g9pa_ g.3.6.2 (A:) Atracotox 4.0 1.4E+02 0.01 16.6 0.9 10 118-127 5-14 (45)
5 d1jfia_ a.22.1.3 (A:) Negative 3.4 4.8E+02 0.035 15.3 4.0 18 185-202 4-22 (66)
6 d1uf9a_ c.37.1.1 (A:) Dephosph 2.7 2.2E+02 0.016 20.0 1.0 18 1-18 4-24 (191)
7 d2croa_ a.35.1.2 (A:) cro 434 2.6 3.1E+02 0.023 15.8 1.6 36 32-67 29-64 (65)
8 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 2.6 2.9E+02 0.021 15.5 1.3 16 3-18 13-28 (46)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 2.5 4.3E+02 0.031 13.1 1.7 9 59-67 4-12 (26)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 2.4 5.7E+02 0.041 16.1 3.0 33 164-196 64-96 (103)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.77 E-value=75 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCccceec
Q 024546 186 LFIINLVIQTKSVEFMP 202 (266)
Q Consensus 186 L~~i~~virtks~~~~~ 202 (266)
+.++--|+|+|..|.+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888887654
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.59 E-value=89 Score=18.19 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCccceec
Q 024546 186 LFIINLVIQTKSVEFMP 202 (266)
Q Consensus 186 L~~i~~virtks~~~~~ 202 (266)
+.++--|+|+|..|.++
T Consensus 17 laQi~LVLKKKQfEKVQ 33 (45)
T d1q90a3 17 LTQVLLVLKKKQFEKVQ 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777666543
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.54 E-value=1.2e+02 Score=19.82 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=5.2
Q ss_pred eeEecCCCCCC
Q 024546 246 YFNYKETSGEE 256 (266)
Q Consensus 246 ~~~y~~~~~~~ 256 (266)
.++|+++++++
T Consensus 40 ~~ryR~~~~~~ 50 (91)
T d1fftb2 40 AWKYRASNKDA 50 (91)
T ss_dssp TTTTTTSTTTC
T ss_pred heeeeccCCcc
Confidence 34555555443
No 4
>d1g9pa_ g.3.6.2 (A:) Atracotoxin-hv2a {Funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.02 E-value=1.4e+02 Score=16.62 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=7.5
Q ss_pred cccCcccccc
Q 024546 118 CSGSAICSVN 127 (266)
Q Consensus 118 ~~~~~~~~~~ 127 (266)
+|||+-||.+
T Consensus 5 lfgngrcssn 14 (45)
T d1g9pa_ 5 LFGNGRCSSN 14 (45)
T ss_dssp SCCSSBCSSG
T ss_pred EecCCcccCC
Confidence 4788888865
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.38 E-value=4.8e+02 Score=15.27 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.1
Q ss_pred hHHHHHHHHhc-Cccceec
Q 024546 185 PLFIINLVIQT-KSVEFMP 202 (266)
Q Consensus 185 PL~~i~~virt-ks~~~~~ 202 (266)
|++.+++++|. .+...++
T Consensus 4 P~srVkkimk~~~~~~~is 22 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVA 22 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBC
T ss_pred ChHHHHHHHhcCCcccccc
Confidence 78888999984 3334443
No 6
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=2.68 E-value=2.2e+02 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=11.2
Q ss_pred Cccccccc---chHHHHHHHH
Q 024546 1 MILTITYQ---ALTVLKDAVG 18 (266)
Q Consensus 1 ~~~~~t~q---~~~~~~~ivg 18 (266)
||.|+||. +.+.+.+.+.
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 67888885 4455555443
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=2.60 E-value=3.1e+02 Score=15.83 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=19.1
Q ss_pred cHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHh
Q 024546 32 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (266)
Q Consensus 32 plp~~~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG 67 (266)
+-.++.++.+.++.-.-...-+.-.+-...-|+.+|
T Consensus 29 s~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 457778877766543322222222333446677777
No 8
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.57 E-value=2.9e+02 Score=15.52 Aligned_cols=16 Identities=6% Similarity=-0.108 Sum_probs=10.1
Q ss_pred ccccccchHHHHHHHH
Q 024546 3 LTITYQALTVLKDAVG 18 (266)
Q Consensus 3 ~~~t~q~~~~~~~ivg 18 (266)
+.+||.+++..+..+-
T Consensus 13 ~~iTg~~~~~A~~~Le 28 (46)
T d1v92a_ 13 VAVTGAEEDRARFFLE 28 (46)
T ss_dssp HHHTCCCHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHH
Confidence 3567777776665543
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.47 E-value=4.3e+02 Score=13.06 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 024546 59 NCLITMWYG 67 (266)
Q Consensus 59 n~~lW~~YG 67 (266)
+..+|+.++
T Consensus 4 slaiw~fw~ 12 (26)
T d1rzhh2 4 SLAIYSFWI 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334555554
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.41 E-value=5.7e+02 Score=16.12 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=21.8
Q ss_pred chhhhhhhhhHHHHHHHHhhhhHHHHHHHHhcC
Q 024546 164 FSRQMFVGLLSCAALISMFASPLFIINLVIQTK 196 (266)
Q Consensus 164 ~~~~~ilG~i~~~~si~~~~sPL~~i~~virtk 196 (266)
....+++..+-.+..+..++.+...+-+.+.+|
T Consensus 64 t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 96 (103)
T d1r3jc_ 64 TLWGRCVAVVVMVAGITSFGLVTAALATWFVGR 96 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777775554433
Done!