Query 024547
Match_columns 266
No_of_seqs 147 out of 319
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 10:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vg5_A RSGI RUH-014, rhomboid 32.2 12 0.00041 27.7 0.5 21 51-72 23-43 (73)
2 2knz_A Ubiquilin-4; cytoplasm, 31.6 19 0.00066 24.4 1.5 13 57-70 11-23 (53)
3 3t5v_A Nuclear mRNA export pro 26.6 20 0.00068 32.2 1.1 19 63-81 229-247 (316)
4 1wr1_B Ubiquitin-like protein 24.1 30 0.001 24.4 1.4 13 58-71 18-30 (58)
5 2dah_A Ubiquilin-3; UBA domain 24.0 26 0.0009 24.1 1.1 15 58-73 10-24 (54)
6 1ify_A HHR23A, UV excision rep 20.8 58 0.002 21.7 2.2 15 56-71 7-21 (49)
7 1vej_A Riken cDNA 4931431F19; 19.6 33 0.0011 25.5 0.8 13 58-71 30-42 (74)
8 4b4t_T 26S proteasome regulato 18.7 45 0.0015 29.1 1.7 23 61-83 202-224 (274)
9 4b0z_A RPN12, 26S proteasome r 18.5 47 0.0016 27.9 1.7 23 61-83 193-215 (229)
10 2ay0_A Bifunctional PUTA prote 16.2 1.1E+02 0.0039 20.9 3.0 33 50-87 7-39 (58)
No 1
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.15 E-value=12 Score=27.65 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=14.0
Q ss_pred eecCHHHHHHhhhhhhhhCCCC
Q 024547 51 IRMPIICAARVFQLTRELGHKS 72 (266)
Q Consensus 51 vRLs~~~A~rfF~LQDeLGfdk 72 (266)
.+....+-..|-+|.+| ||+.
T Consensus 23 ~~~~~~~ee~I~~L~eM-GF~r 43 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAM-GFDR 43 (73)
T ss_dssp CCCSCCCHHHHHHHHTT-TCCH
T ss_pred ccCCcccHHHHHHHHHc-CCCH
Confidence 34555666777888875 8854
No 2
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=31.56 E-value=19 Score=24.43 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=9.0
Q ss_pred HHHHhhhhhhhhCC
Q 024547 57 CAARVFQLTRELGH 70 (266)
Q Consensus 57 ~A~rfF~LQDeLGf 70 (266)
+..++-+|.+| ||
T Consensus 11 ~~~~l~~L~~M-GF 23 (53)
T 2knz_A 11 FQQQLEQLNSM-GF 23 (53)
T ss_dssp HHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHc-CC
Confidence 45567777766 88
No 3
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.56 E-value=20 Score=32.20 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=17.5
Q ss_pred hhhhhhCCCCCchHHHHHH
Q 024547 63 QLTRELGHKSDGQTIEWLL 81 (266)
Q Consensus 63 ~LQDeLGfdkaSkTIEWLL 81 (266)
.|+++||||+..++++|+-
T Consensus 229 ~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 229 YLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp HHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 6999999999999999993
No 4
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.11 E-value=30 Score=24.38 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHhhhhhhhhCCC
Q 024547 58 AARVFQLTRELGHK 71 (266)
Q Consensus 58 A~rfF~LQDeLGfd 71 (266)
..++=+|.+| ||.
T Consensus 18 ~~qi~~L~~M-GF~ 30 (58)
T 1wr1_B 18 EHQLRQLNDM-GFF 30 (58)
T ss_dssp HHHHHHHHHH-TCC
T ss_pred HHHHHHHHHc-CCC
Confidence 4567778876 983
No 5
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.03 E-value=26 Score=24.15 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=10.1
Q ss_pred HHHhhhhhhhhCCCCC
Q 024547 58 AARVFQLTRELGHKSD 73 (266)
Q Consensus 58 A~rfF~LQDeLGfdka 73 (266)
..++=+|++| ||...
T Consensus 10 ~~~l~~L~~M-GF~d~ 24 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNR 24 (54)
T ss_dssp HHHHHHHHHH-TCCCH
T ss_pred HHHHHHHHHc-CCCcH
Confidence 4567778877 99443
No 6
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.83 E-value=58 Score=21.67 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=9.5
Q ss_pred HHHHHhhhhhhhhCCC
Q 024547 56 ICAARVFQLTRELGHK 71 (266)
Q Consensus 56 ~~A~rfF~LQDeLGfd 71 (266)
.+-.++-+|.+| ||+
T Consensus 7 ~~~~~i~~L~~M-GF~ 21 (49)
T 1ify_A 7 EYETMLTEIMSM-GYE 21 (49)
T ss_dssp HHHHHHHHHHHT-TCC
T ss_pred cCHHHHHHHHHc-CCC
Confidence 345566677766 774
No 7
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=19.63 E-value=33 Score=25.45 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=9.4
Q ss_pred HHHhhhhhhhhCCC
Q 024547 58 AARVFQLTRELGHK 71 (266)
Q Consensus 58 A~rfF~LQDeLGfd 71 (266)
..++=+|.+| ||.
T Consensus 30 e~qi~qL~eM-GF~ 42 (74)
T 1vej_A 30 QQELEELKAL-GFA 42 (74)
T ss_dssp HHHHHHHHHH-TCC
T ss_pred HHHHHHHHHc-CCC
Confidence 4577788876 993
No 8
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=18.66 E-value=45 Score=29.06 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred hhhhhhhhCCCCCchHHHHHHHh
Q 024547 61 VFQLTRELGHKSDGQTIEWLLRQ 83 (266)
Q Consensus 61 fF~LQDeLGfdkaSkTIEWLL~q 83 (266)
+-+++++|+|+.+.++++|+-++
T Consensus 202 l~~~~~~L~F~s~~e~~~F~~~~ 224 (274)
T 4b4t_T 202 LSNIKALLFFNNEKETEKFALER 224 (274)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHc
Confidence 45789999999999999999665
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=18.47 E-value=47 Score=27.89 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=19.4
Q ss_pred hhhhhhhhCCCCCchHHHHHHHh
Q 024547 61 VFQLTRELGHKSDGQTIEWLLRQ 83 (266)
Q Consensus 61 fF~LQDeLGfdkaSkTIEWLL~q 83 (266)
+-+++++||||++.++++|+-++
T Consensus 193 l~~~~~~L~f~s~~e~~~f~~~~ 215 (229)
T 4b0z_A 193 LSNATSLLYLENTKETEKLAEER 215 (229)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHc
Confidence 45788999999999999998653
No 10
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=16.24 E-value=1.1e+02 Score=20.87 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.0
Q ss_pred eeecCHHHHHHhhhhhhhhCCCCCchHHHHHHHhchHH
Q 024547 50 RIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPS 87 (266)
Q Consensus 50 RvRLs~~~A~rfF~LQDeLGfdkaSkTIEWLL~qak~A 87 (266)
-||||.+...++=.|.+.+|- +.-||+++|=..
T Consensus 7 svrL~~el~~rL~~lA~~~~r-----s~s~lireAi~~ 39 (58)
T 2ay0_A 7 GVMLDDATRERIKSAATRIDR-----TPHWLIKQAIFS 39 (58)
T ss_dssp EEEECHHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred EeECCHHHHHHHHHHHHHHCc-----CHHHHHHHHHHH
Confidence 489999999999999998875 678998776433
Done!