Query 024547
Match_columns 266
No_of_seqs 147 out of 319
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 10:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024547.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024547hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 43.4 5.4 0.00039 27.1 1.9 21 78-98 4-25 (53)
2 d1a1ia3 g.37.1.1 (A:160-187) Z 36.6 1.6 0.00012 26.6 -1.5 14 34-47 15-28 (28)
3 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 19.9 36 0.0026 26.3 3.3 22 64-85 296-325 (346)
4 d2c5aa1 c.2.1.2 (A:13-375) GDP 17.7 28 0.0021 26.9 2.2 22 63-84 300-328 (363)
5 d1n7ha_ c.2.1.2 (A:) GDP-manno 15.2 36 0.0026 25.7 2.1 22 64-85 301-329 (339)
6 d1wgna_ a.5.2.1 (A:) Ubiquitin 15.1 20 0.0015 23.9 0.5 14 73-86 47-60 (63)
7 d1rpna_ c.2.1.2 (A:) GDP-manno 14.6 45 0.0033 25.0 2.5 22 64-85 291-319 (321)
8 d2hzaa1 a.43.1.3 (A:1-48) Nick 13.9 69 0.005 20.5 3.0 34 51-84 6-39 (48)
9 d1wiva_ a.5.2.1 (A:) Ubiquitin 11.9 28 0.0021 23.6 0.5 14 73-86 57-70 (73)
10 d1qpza1 a.35.1.5 (A:2-58) Puri 11.6 74 0.0054 20.6 2.6 22 52-73 26-47 (57)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=43.40 E-value=5.4 Score=27.11 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=16.8
Q ss_pred HHHHHhch-HHHHHhhCCCCCC
Q 024547 78 EWLLRQAE-PSIIAATGTGTTP 98 (266)
Q Consensus 78 EWLL~qak-~AI~~atgtgt~P 98 (266)
+|||.+|| .||.++...|.+-
T Consensus 4 ~~~Lk~AKe~AI~eLK~~GIts 25 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKKAGITS 25 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCccH
Confidence 79999995 6788998887643
No 2
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.59 E-value=1.6 Score=26.56 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=10.9
Q ss_pred CCCCCCCcccccCC
Q 024547 34 KPPSKDRHSKVDGR 47 (266)
Q Consensus 34 k~~~KDRHSKV~~R 47 (266)
|+-.+.||+|||.|
T Consensus 15 rsderkRH~kiH~k 28 (28)
T d1a1ia3 15 RSDERKRHTKIHLR 28 (28)
T ss_dssp SHHHHHHHHGGGCC
T ss_pred cchhhhhhhhhccC
Confidence 44568899999975
No 3
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=19.89 E-value=36 Score=26.29 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=15.7
Q ss_pred hhhhhCCCCC-c-------hHHHHHHHhch
Q 024547 64 LTRELGHKSD-G-------QTIEWLLRQAE 85 (266)
Q Consensus 64 LQDeLGfdka-S-------kTIEWLL~qak 85 (266)
++++|||+.- + +||+|.+++-.
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 4578898742 3 79999998643
No 4
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.72 E-value=28 Score=26.93 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=16.3
Q ss_pred hhhhhhCCCCC-------chHHHHHHHhc
Q 024547 63 QLTRELGHKSD-------GQTIEWLLRQA 84 (266)
Q Consensus 63 ~LQDeLGfdka-------SkTIEWLL~qa 84 (266)
.+.++|||+.- .+||+|++++-
T Consensus 300 ka~~~LGw~p~~sleegi~~ti~w~~~~~ 328 (363)
T d2c5aa1 300 LIKEKLGWAPNMRLKEGLRITYFWIKEQI 328 (363)
T ss_dssp HHHHHHSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677899743 68999997763
No 5
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.22 E-value=36 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.198 Sum_probs=16.7
Q ss_pred hhhhhCCCCC-------chHHHHHHHhch
Q 024547 64 LTRELGHKSD-------GQTIEWLLRQAE 85 (266)
Q Consensus 64 LQDeLGfdka-------SkTIEWLL~qak 85 (266)
++++|||+.- -+||||-|+.+|
T Consensus 301 ak~~LGw~P~~~le~gi~~ti~~~~~~~~ 329 (339)
T d1n7ha_ 301 AKEVLGWKPQVGFEKLVKMMVDEDLELAK 329 (339)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 5678899653 479999988764
No 6
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.05 E-value=20 Score=23.88 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=10.6
Q ss_pred CchHHHHHHHhchH
Q 024547 73 DGQTIEWLLRQAEP 86 (266)
Q Consensus 73 aSkTIEWLL~qak~ 86 (266)
-..+|+|||.++.|
T Consensus 47 ~e~A~~~Lls~~~p 60 (63)
T d1wgna_ 47 IEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCC
Confidence 55689999988644
No 7
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.57 E-value=45 Score=24.99 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=16.1
Q ss_pred hhhhhCCCCC-c------hHHHHHHHhch
Q 024547 64 LTRELGHKSD-G------QTIEWLLRQAE 85 (266)
Q Consensus 64 LQDeLGfdka-S------kTIEWLL~qak 85 (266)
++.+|||+.. + +||||-|+.+|
T Consensus 291 ~~k~lG~~P~~~l~e~i~~tv~~~l~~~~ 319 (321)
T d1rpna_ 291 AQRVLGWKPRTSLDELIRMMVEADLRRVS 319 (321)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 5677899653 2 78999888765
No 8
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.95 E-value=69 Score=20.49 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=31.0
Q ss_pred eecCHHHHHHhhhhhhhhCCCCCchHHHHHHHhc
Q 024547 51 IRMPIICAARVFQLTRELGHKSDGQTIEWLLRQA 84 (266)
Q Consensus 51 vRLs~~~A~rfF~LQDeLGfdkaSkTIEWLL~qa 84 (266)
|.||-+...+|=.+..+.||..-||+|.=|++..
T Consensus 6 Vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 39 (48)
T d2hzaa1 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (48)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6788999999999999999999999999998764
No 9
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.92 E-value=28 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.631 Sum_probs=9.9
Q ss_pred CchHHHHHHHhchH
Q 024547 73 DGQTIEWLLRQAEP 86 (266)
Q Consensus 73 aSkTIEWLL~qak~ 86 (266)
-..+|+|||.++.+
T Consensus 57 ~e~Av~~Lls~~~~ 70 (73)
T d1wiva_ 57 IEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 34678899887654
No 10
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.64 E-value=74 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=19.7
Q ss_pred ecCHHHHHHhhhhhhhhCCCCC
Q 024547 52 RMPIICAARVFQLTRELGHKSD 73 (266)
Q Consensus 52 RLs~~~A~rfF~LQDeLGfdka 73 (266)
+++.+...++.+.-++|||..+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHHHHHHCCCCC
Confidence 5899999999999999999754
Done!