BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024548
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 244 bits (624), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 166/215 (77%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVIPND++L V
Sbjct: 115 PVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 174
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+LMGIG ATG+
Sbjct: 175 KNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGE 234
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
RA +AA AI SPLL+ I+ A G++ NITGG++L+L+EV AA+++ D N+IF
Sbjct: 235 NRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIF 294
Query: 191 GAVIDPSLSGQVSITLIATGFKRQEESEGRPLQAS 225
G+VI+ +L ++ +T+IATGF QE+ +P + S
Sbjct: 295 GSVINENLKDEIVVTVIATGFIEQEKDVTKPQRPS 329
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 162/233 (69%), Gaps = 7/233 (3%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 120 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 179
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 180 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 239
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE AA+++ D D N+I
Sbjct: 240 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMI 299
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAFGINRRPSS 242
FG VI+P L ++ +T+IATGF + S GR G FG + SS
Sbjct: 300 FGTVINPELQDEIVVTVIATGFDDKPTSHGRK-------SGSTGFGTSVNTSS 345
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 162/233 (69%), Gaps = 7/233 (3%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 116 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 175
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 176 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 235
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE AA+++ D D N+I
Sbjct: 236 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMI 295
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAFGINRRPSS 242
FG VI+P L ++ +T+IATGF + S GR G FG + SS
Sbjct: 296 FGTVINPELQDEIVVTVIATGFDDKPTSHGRK-------SGSTGFGTSVNTSS 341
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 159/201 (79%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVIPND++L V
Sbjct: 105 PVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 164
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+LMGIG ATG+
Sbjct: 165 KNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGE 224
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
RA +AA AI SPLL+ I+ A G++ NITGG++L+L+EV AA+++ D N+IF
Sbjct: 225 NRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIF 284
Query: 191 GAVIDPSLSGQVSITLIATGF 211
G+VI+ +L ++ +T+IATGF
Sbjct: 285 GSVINENLKDEIVVTVIATGF 305
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/202 (56%), Positives = 152/202 (75%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVIPND+LL V
Sbjct: 106 APVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIV 165
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+LMGIG ++G
Sbjct: 166 DKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSG 225
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE AA+++ D D N+I
Sbjct: 226 ENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMI 285
Query: 190 FGAVIDPSLSGQVSITLIATGF 211
FG VI+P L ++ +T+IATGF
Sbjct: 286 FGTVINPELQDEIVVTVIATGF 307
>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RLU|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RQ2|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ2|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ7|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
pdb|1RQ7|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
Length = 382
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 152/201 (75%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVIPND+LL
Sbjct: 115 PVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 174
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++LMGIG+A G+
Sbjct: 175 AAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGE 234
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
R+ AA AI SPLL+ +E A G++ +I GGSDL LFE+N AA ++ D P AN+IF
Sbjct: 235 GRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIF 294
Query: 191 GAVIDPSLSGQVSITLIATGF 211
G VID SL +V +T+IA GF
Sbjct: 295 GTVIDDSLGDEVRVTVIAAGF 315
>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1X|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1Y|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
pdb|2Q1Y|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
Length = 379
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 152/201 (75%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVIPND+LL
Sbjct: 112 PVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 171
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++LMGIG+A G+
Sbjct: 172 AAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGE 231
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
R+ AA AI SPLL+ +E A G++ +I GGSDL LFE+N AA ++ D P AN+IF
Sbjct: 232 GRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIF 291
Query: 191 GAVIDPSLSGQVSITLIATGF 211
G VID SL +V +T+IA GF
Sbjct: 292 GTVIDDSLGDEVRVTVIAAGF 312
>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|B Chain B, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|C Chain C, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|D Chain D, Staphylococcus Aureus Ftsz Apo-Form (Semet)
Length = 308
Score = 226 bits (576), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 112/202 (55%), Positives = 146/202 (72%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A +AK G LTVG+VT PFSFEGR+R QA G+ + + VDTLIVIPND+LL V
Sbjct: 106 APVVAKIAKEXGALTVGVVTRPFSFEGRKRQTQAAAGVEAXKAAVDTLIVIPNDRLLDIV 165
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+STP EAF AD++LRQGV+GISD+I + G VN+DFADV+ I +N GS+L GIG ++G
Sbjct: 166 DKSTPXXEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIXSNQGSALXGIGVSSG 225
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA +AA AI SPLL+ I A G++ NITGG L+LFE AA+++ D D N I
Sbjct: 226 ENRAVEAAKKAISSPLLETSIVGAQGVLXNITGGESLSLFEAQEAADIVQDAADEDVNXI 285
Query: 190 FGAVIDPSLSGQVSITLIATGF 211
FG VI+P L ++ +T+IATGF
Sbjct: 286 FGTVINPELQDEIVVTVIATGF 307
>pdb|4E6E|A Chain A, Crystal Structure Of A Putative Cell Division Protein Ftsz
(Tfu_1113) From Thermobifida Fusca Yx-Er1 At 2.22 A
Resolution
Length = 314
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 151/201 (75%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PV+A +A+S+G LT+G+VT PFSFEG+RRA QA+ GIA LR+ VDTLIVIPND+LL+
Sbjct: 113 PVVANIARSLGALTIGVVTRPFSFEGKRRATQAEAGIAXLREEVDTLIVIPNDRLLSISD 172
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
+ V +AF AD +L GV+GI+D+IT PGL+N+DFADV+++ + AGS+L GIG+A G
Sbjct: 173 RQVSVLDAFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVXSGAGSALXGIGSARGD 232
Query: 131 TRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
RA AA AI SPLL+ I+ A G++ +I GGSDL LFE+N AA+++ + AN+IF
Sbjct: 233 DRAVAAAEXAISSPLLEASIDGAHGVLLSIQGGSDLGLFEINEAAQLVANSAAAEANIIF 292
Query: 191 GAVIDPSLSGQVSITLIATGF 211
GAVID +L +V +T+IA GF
Sbjct: 293 GAVIDDALGDEVRVTVIAAGF 313
>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp
Length = 394
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 1/203 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI IPN+KLLT +
Sbjct: 114 APIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G ++MG G A+G
Sbjct: 174 GKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASG 233
Query: 130 KTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANL 188
RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E + +I A +
Sbjct: 234 PNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATV 293
Query: 189 IFGAVIDPSLSGQVSITLIATGF 211
G VID + ++ +T++ATG
Sbjct: 294 KVGTVIDADMRDELHVTVVATGL 316
>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
pdb|1OFU|B Chain B, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
Length = 320
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 1/203 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI IPN+KLLT +
Sbjct: 114 APIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G ++MG G A+G
Sbjct: 174 GKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASG 233
Query: 130 KTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANL 188
RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E + +I A +
Sbjct: 234 PNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATV 293
Query: 189 IFGAVIDPSLSGQVSITLIATGF 211
G VID + ++ +T++ATG
Sbjct: 294 KVGTVIDADMRDELHVTVVATGL 316
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E + +DP A +I
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATII 318
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQL 227
+GA ID +L V + L+ TG + + E L+ +L
Sbjct: 319 YGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRKKL 356
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E + +DP A +I
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATII 318
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQL 227
+GA ID +L V + L+ TG + + E L+ +L
Sbjct: 319 WGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRKKL 356
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 140 APVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 199
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATG 129
+ P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +++GIG +
Sbjct: 200 P-NMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDS 258
Query: 130 KTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+ RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E + +DP A +I
Sbjct: 259 EKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATII 318
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQL 227
+GA ID +L V + L+ TG + + E L+ +L
Sbjct: 319 WGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRKKL 356
>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
pdb|1W5F|B Chain B, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
Length = 353
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 134/205 (65%), Gaps = 3/205 (1%)
Query: 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAV 69
+PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I N+KL+ +
Sbjct: 124 SPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEEL 183
Query: 70 SQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVD--FADVRAIMANAGSSLMGIGTA 127
+ + +AF AD+ L QGV+GIS++IT G + + FA + ++M +AG++++GIG
Sbjct: 184 PRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVG 243
Query: 128 TGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTAN 187
G+ RAR+AA A++S L++ +E A+ IV+NIT S++ + EV+ AA +I A+
Sbjct: 244 KGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDAD 303
Query: 188 LIFGAVIDPSL-SGQVSITLIATGF 211
+ FG + D + ++ + IAT F
Sbjct: 304 VKFGLIFDDEVPDDEIRVIFIATRF 328
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 10/230 (4%)
Query: 11 PVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVS 70
PVIA AK MGILTV + T PF FEG R+ +A +G+ L+++ D IVI NDK+ +
Sbjct: 111 PVIAKTAKEMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSN 170
Query: 71 QSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGK 130
++ + +AF D +L + VRGI+ I+ P ++NVDFADVR + G S++G+G G
Sbjct: 171 RTLTIKDAFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGD 230
Query: 131 TRARDAALNAIQSPLLDIG-IERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLI 189
+A A A+ SPLL+ IE A ++ I D+ V+ E I+ V P A +I
Sbjct: 231 EKADIAVEKAVTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEII 290
Query: 190 FGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAFGINRR 239
FGAV++P + + ++AT F P + Q+ + + F + ++
Sbjct: 291 FGAVLEPQEQDFIRVAIVATDF---------PEEKFQVGEKEVKFKVIKK 331
>pdb|1VPX|A Chain A, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|B Chain B, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|C Chain C, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|D Chain D, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|E Chain E, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|F Chain F, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|G Chain G, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|H Chain H, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|I Chain I, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|J Chain J, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|K Chain K, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|L Chain L, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|M Chain M, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|N Chain N, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|O Chain O, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|P Chain P, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|Q Chain Q, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|R Chain R, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|S Chain S, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
Length = 230
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 50 LRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDF-- 107
++ NV TL+ P +L A + +T V+ DD+ G+R + +I+ I N F
Sbjct: 114 IKTNV-TLVFSPAQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYN--NYGFET 170
Query: 108 ----ADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIER 152
A +R M ++LMG+ T + + P+ D+GIER
Sbjct: 171 EIIAASIRHPMHVVEAALMGVDIVTMPFAVLEKLF---KHPMTDLGIER 216
>pdb|2O19|A Chain A, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O19|B Chain B, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O54|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O54|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O59|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O59|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O5C|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5C|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5E|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
pdb|2O5E|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
Length = 659
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAFN 80
E +
Sbjct: 247 EPYQ 250
>pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii
Length = 653
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAFN 80
E +
Sbjct: 247 EPYQ 250
>pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With
An 8-Base Single-Stranded Dna Oligonucleotide
Length = 659
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 17 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76
A G+L+VG V TP RR + + +A V IV P D+ TA+ Q +
Sbjct: 187 AGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEAC 246
Query: 77 EAFN 80
E +
Sbjct: 247 EPYQ 250
>pdb|1WX0|A Chain A, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|B Chain B, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|C Chain C, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|D Chain D, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|E Chain E, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|F Chain F, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|G Chain G, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|H Chain H, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|I Chain I, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|J Chain J, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
Length = 223
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 27 IVTTPFSFEGRRRAVQ-AQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDI 85
+V P + EG + + + EGI + N+ TLI N LL A + ++ V+ DDI
Sbjct: 90 VVKLPTTEEGLKACKRLSAEGI---KVNM-TLIFSANQALLAARAGASYVSPFLGRVDDI 145
Query: 86 LRQG---VRGISDIITIPGL-VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAI 141
G +R I ++I + L V V A +R ++L+G AT L
Sbjct: 146 SWDGGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALLGADIATMPHAVFKQLL--- 202
Query: 142 QSPLLDIGIER 152
+ PL DIG++R
Sbjct: 203 KHPLTDIGLKR 213
>pdb|3GEC|A Chain A, Crystal Structure Of A Tandem Pas Domain Fragment Of
Drosophila Period
Length = 312
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 26 GIVTTPFSFEGRRRAVQAQEGIASLR-DNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
G++ P S+E R + +E R DN ++ N + V +TP+ ++ + D+
Sbjct: 101 GVIGRPVSYEPFRLGLTFREAPEEARPDNY----MVSNGTNMLLVICATPIKSSYKVPDE 156
Query: 85 ILRQGVRGISDIITIPGLV-NVDFADVRAI 113
IL Q + T G++ +VD A V A+
Sbjct: 157 ILSQKSPKFAIRHTATGIISHVDSAAVSAL 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,890,012
Number of Sequences: 62578
Number of extensions: 267378
Number of successful extensions: 718
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 37
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)