Query 024548
Match_columns 266
No_of_seqs 236 out of 1371
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 1.7E-64 3.7E-69 472.3 27.7 211 1-211 107-318 (384)
2 PRK13018 cell division protein 100.0 3.2E-58 6.9E-63 429.7 28.1 256 1-265 122-377 (378)
3 TIGR00065 ftsZ cell division p 100.0 7.3E-57 1.6E-61 418.3 25.2 215 1-216 111-329 (349)
4 COG0206 FtsZ Cell division GTP 100.0 6.5E-56 1.4E-60 407.0 22.7 213 1-214 105-318 (338)
5 cd02191 FtsZ FtsZ is a GTPase 100.0 8.3E-55 1.8E-59 398.2 24.1 209 1-210 94-303 (303)
6 cd02201 FtsZ_type1 FtsZ is a G 100.0 1.2E-54 2.7E-59 397.7 24.8 210 1-210 94-304 (304)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.4E-45 5.3E-50 341.7 24.0 208 1-214 107-346 (349)
8 COG5023 Tubulin [Cytoskeleton] 100.0 5.5E-32 1.2E-36 246.5 13.5 208 1-208 139-372 (443)
9 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.9E-29 4.1E-34 233.3 15.5 207 1-209 98-327 (328)
10 PF12327 FtsZ_C: FtsZ family, 99.9 2.7E-26 5.8E-31 176.3 11.4 95 118-212 1-95 (95)
11 PTZ00387 epsilon tubulin; Prov 99.9 6.7E-25 1.4E-29 211.1 14.6 209 1-209 140-395 (465)
12 cd06059 Tubulin The tubulin su 99.9 2.3E-24 5.1E-29 203.3 14.0 209 1-209 98-328 (382)
13 cd02190 epsilon_tubulin The tu 99.9 3.1E-24 6.7E-29 202.2 14.3 198 1-210 108-325 (379)
14 cd02187 beta_tubulin The tubul 99.9 3.7E-24 8.1E-29 204.4 13.8 209 1-209 138-369 (425)
15 PLN00220 tubulin beta chain; P 99.9 6E-24 1.3E-28 204.2 13.5 209 1-209 139-370 (447)
16 cd02188 gamma_tubulin Gamma-tu 99.9 1.2E-23 2.7E-28 200.9 14.0 208 1-208 139-375 (431)
17 PTZ00010 tubulin beta chain; P 99.9 7.6E-24 1.7E-28 203.2 11.6 210 1-210 139-371 (445)
18 PLN00222 tubulin gamma chain; 99.9 1.2E-23 2.6E-28 202.2 12.7 209 1-209 141-382 (454)
19 cd02186 alpha_tubulin The tubu 99.9 4.3E-23 9.3E-28 197.6 13.8 208 1-208 140-378 (434)
20 PTZ00335 tubulin alpha chain; 99.9 2.8E-23 6E-28 199.4 12.5 209 1-209 141-380 (448)
21 smart00864 Tubulin Tubulin/Fts 99.9 2.5E-23 5.5E-28 178.9 10.1 101 1-101 92-192 (192)
22 PLN00221 tubulin alpha chain; 99.9 1.2E-22 2.6E-27 195.0 13.7 197 1-197 141-360 (450)
23 cd02189 delta_tubulin The tubu 99.8 1.4E-18 3E-23 167.1 14.5 207 1-210 135-393 (446)
24 KOG1374 Gamma tubulin [Cytoske 99.7 1.4E-17 2.9E-22 152.9 9.9 180 1-181 141-344 (448)
25 PF00091 Tubulin: Tubulin/FtsZ 99.7 1.1E-17 2.3E-22 146.4 6.8 81 1-81 133-216 (216)
26 KOG1376 Alpha tubulin [Cytoske 99.6 2.6E-17 5.5E-22 150.5 1.1 180 1-182 140-331 (407)
27 smart00865 Tubulin_C Tubulin/F 99.6 3E-15 6.6E-20 117.7 12.8 113 103-215 1-115 (120)
28 KOG1375 Beta tubulin [Cytoskel 99.6 8.3E-17 1.8E-21 147.3 2.5 192 1-209 84-294 (369)
29 cd06060 misato Human Misato sh 97.6 0.00028 6.2E-09 69.0 8.8 124 1-127 160-299 (493)
30 PF03953 Tubulin_C: Tubulin C- 95.8 0.08 1.7E-06 42.3 8.7 92 118-209 2-113 (126)
31 PF13809 Tubulin_2: Tubulin li 95.5 0.028 6.1E-07 52.6 5.8 52 1-52 156-219 (345)
32 TIGR03483 FtsZ_alphas_C cell d 88.7 0.18 3.8E-06 40.4 0.8 16 244-259 105-120 (121)
33 PF00289 CPSase_L_chain: Carba 82.7 7.6 0.00017 30.3 7.4 93 6-125 9-106 (110)
34 COG4962 CpaF Flp pilus assembl 76.1 3.9 8.5E-05 38.5 4.3 60 1-60 178-255 (355)
35 PF00004 AAA: ATPase family as 66.1 31 0.00067 26.2 6.9 64 3-66 5-70 (132)
36 KOG0238 3-Methylcrotonyl-CoA c 64.7 21 0.00046 35.5 6.7 175 10-213 10-216 (670)
37 PRK05800 cobU adenosylcobinami 55.8 31 0.00066 28.9 5.5 37 3-39 8-45 (170)
38 PF14881 Tubulin_3: Tubulin do 54.1 40 0.00088 28.6 6.0 76 10-96 92-177 (180)
39 COG0648 Nfo Endonuclease IV [D 53.8 1.8E+02 0.0039 26.7 11.0 70 3-74 5-80 (280)
40 COG1929 Glycerate kinase [Carb 49.4 21 0.00045 33.9 3.7 72 7-97 301-373 (378)
41 COG2519 GCD14 tRNA(1-methylade 47.9 18 0.0004 32.6 3.1 40 4-53 102-142 (256)
42 PRK00414 gmhA phosphoheptose i 47.9 88 0.0019 26.6 7.2 64 5-90 119-186 (192)
43 PRK13937 phosphoheptose isomer 47.5 1E+02 0.0022 26.0 7.5 66 5-92 114-182 (188)
44 PRK10886 DnaA initiator-associ 47.3 86 0.0019 27.0 7.1 68 5-91 117-187 (196)
45 smart00382 AAA ATPases associa 46.3 86 0.0019 23.1 6.4 62 2-63 8-87 (148)
46 PRK13660 hypothetical protein; 44.9 63 0.0014 27.6 5.8 78 2-88 49-128 (182)
47 COG1083 NeuA CMP-N-acetylneura 42.4 33 0.00071 30.3 3.7 81 10-95 53-135 (228)
48 PF06908 DUF1273: Protein of u 42.1 29 0.00063 29.5 3.3 72 10-90 59-130 (177)
49 COG4821 Uncharacterized protei 41.2 31 0.00066 30.3 3.2 51 9-65 118-169 (243)
50 PRK04220 2-phosphoglycerate ki 40.5 23 0.00051 32.7 2.6 23 1-23 97-119 (301)
51 cd00009 AAA The AAA+ (ATPases 40.4 1.3E+02 0.0028 22.4 6.6 28 3-30 26-56 (151)
52 PF14084 DUF4264: Protein of u 39.4 99 0.0021 21.0 4.8 37 169-207 14-50 (52)
53 cd00544 CobU Adenosylcobinamid 39.3 1.2E+02 0.0027 25.2 6.7 38 2-39 5-43 (169)
54 PF00175 NAD_binding_1: Oxidor 38.9 18 0.00038 26.9 1.4 12 4-15 3-14 (109)
55 COG2074 2-phosphoglycerate kin 37.3 29 0.00064 31.6 2.7 24 1-24 94-117 (299)
56 cd02020 CMPK Cytidine monophos 36.6 30 0.00066 26.9 2.5 27 1-27 4-30 (147)
57 TIGR01732 tiny_TM_bacill conse 33.8 29 0.00063 20.1 1.3 12 2-13 1-12 (26)
58 PF00406 ADK: Adenylate kinase 33.7 32 0.00069 27.5 2.2 25 3-27 3-27 (151)
59 PRK04182 cytidylate kinase; Pr 33.7 37 0.00081 27.5 2.6 26 1-26 5-30 (180)
60 PF08704 GCD14: tRNA methyltra 33.3 43 0.00093 30.0 3.1 41 3-53 47-88 (247)
61 COG0621 MiaB 2-methylthioadeni 32.3 2.2E+02 0.0048 27.8 8.0 120 72-192 172-306 (437)
62 TIGR00441 gmhA phosphoheptose 32.2 91 0.002 25.3 4.7 43 6-63 88-133 (154)
63 COG2518 Pcm Protein-L-isoaspar 31.3 37 0.0008 29.7 2.3 52 4-67 80-132 (209)
64 COG0439 AccC Biotin carboxylas 30.7 2.3E+02 0.005 27.7 7.9 92 9-127 13-108 (449)
65 PF13704 Glyco_tranf_2_4: Glyc 30.0 1.4E+02 0.003 21.6 5.1 62 14-77 34-95 (97)
66 cd05006 SIS_GmhA Phosphoheptos 28.8 1E+02 0.0023 25.4 4.6 43 6-63 110-155 (177)
67 TIGR02173 cyt_kin_arch cytidyl 28.6 51 0.0011 26.5 2.6 25 1-25 5-29 (171)
68 COG0572 Udk Uridine kinase [Nu 28.5 56 0.0012 28.8 2.9 64 1-68 13-76 (218)
69 COG0111 SerA Phosphoglycerate 28.2 71 0.0015 29.8 3.7 55 6-60 149-204 (324)
70 PF02826 2-Hacid_dh_C: D-isome 28.1 28 0.00061 29.0 1.0 55 6-60 43-98 (178)
71 PF08515 TGF_beta_GS: Transfor 28.0 54 0.0012 19.5 1.9 13 3-15 13-25 (29)
72 PF13189 Cytidylate_kin2: Cyti 27.0 44 0.00096 27.9 2.0 23 2-24 5-27 (179)
73 COG1611 Predicted Rossmann fol 26.9 1.1E+02 0.0024 26.6 4.5 58 6-63 55-120 (205)
74 KOG2526 Predicted aminopeptida 26.5 94 0.002 30.5 4.2 56 5-62 238-305 (555)
75 COG0794 GutQ Predicted sugar p 26.5 1.4E+02 0.003 26.1 4.9 46 5-65 94-142 (202)
76 cd05710 SIS_1 A subgroup of th 26.1 1.9E+02 0.0041 22.2 5.4 36 13-63 66-101 (120)
77 cd02019 NK Nucleoside/nucleoti 25.9 1.7E+02 0.0037 20.1 4.6 59 2-62 5-63 (69)
78 COG3743 Uncharacterized conser 25.4 25 0.00054 28.5 0.2 21 7-27 73-93 (133)
79 smart00467 GS GS motif. Aa app 25.4 54 0.0012 19.7 1.5 17 2-18 11-28 (30)
80 PRK12748 3-ketoacyl-(acyl-carr 25.4 2.8E+02 0.0061 23.7 6.9 31 2-32 11-42 (256)
81 PRK05904 coproporphyrinogen II 24.9 1.9E+02 0.004 27.1 6.0 83 1-91 62-154 (353)
82 PRK13938 phosphoheptose isomer 24.8 3.8E+02 0.0082 22.9 7.4 64 5-90 121-187 (196)
83 PRK05628 coproporphyrinogen II 24.3 3E+02 0.0065 25.7 7.3 99 1-107 65-177 (375)
84 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.0 1.6E+02 0.0035 22.3 4.6 36 13-63 65-100 (126)
85 PF02568 ThiI: Thiamine biosyn 23.6 2.2E+02 0.0047 24.6 5.6 95 10-131 16-121 (197)
86 PRK12338 hypothetical protein; 23.3 99 0.0022 28.8 3.7 25 1-25 9-33 (319)
87 TIGR00315 cdhB CO dehydrogenas 23.1 3.7E+02 0.0079 22.5 6.8 28 1-28 34-62 (162)
88 TIGR03127 RuMP_HxlB 6-phospho 23.0 1.8E+02 0.0039 23.9 5.0 46 6-66 81-129 (179)
89 PTZ00301 uridine kinase; Provi 22.5 1.1E+02 0.0024 26.5 3.7 34 1-34 8-45 (210)
90 PRK05441 murQ N-acetylmuramic 22.5 1.4E+02 0.0031 27.3 4.6 43 5-62 139-184 (299)
91 TIGR00177 molyb_syn molybdenum 22.5 2.9E+02 0.0063 22.1 6.0 45 10-60 29-73 (144)
92 TIGR00783 ccs citrate carrier 21.8 42 0.0009 31.7 0.9 12 1-12 92-103 (347)
93 PRK05660 HemN family oxidoredu 21.8 3.3E+02 0.0071 25.6 7.0 83 1-91 64-158 (378)
94 PRK12314 gamma-glutamyl kinase 21.7 2.8E+02 0.0062 24.8 6.3 55 12-66 91-145 (266)
95 PRK11337 DNA-binding transcrip 21.7 2.2E+02 0.0048 25.4 5.6 45 6-65 196-243 (292)
96 PRK14532 adenylate kinase; Pro 21.4 82 0.0018 26.0 2.6 26 1-26 5-30 (188)
97 smart00852 MoCF_biosynth Proba 21.1 3.6E+02 0.0078 21.0 6.2 47 8-60 18-64 (135)
98 PF13207 AAA_17: AAA domain; P 20.9 92 0.002 23.4 2.6 26 2-27 5-30 (121)
99 TIGR01351 adk adenylate kinase 20.8 1E+02 0.0022 26.2 3.0 25 2-26 5-29 (210)
100 PHA00520 packaging NTPase P4 20.5 2.4E+02 0.0052 26.3 5.4 28 3-30 131-159 (330)
101 cd06202 Nitric_oxide_synthase 20.4 52 0.0011 31.5 1.3 13 4-16 253-265 (406)
102 cd01428 ADK Adenylate kinase ( 20.4 1.1E+02 0.0023 25.2 3.0 25 2-26 5-29 (194)
103 PRK07952 DNA replication prote 20.3 3.2E+02 0.0069 24.3 6.2 30 1-31 104-136 (244)
104 PRK09249 coproporphyrinogen II 20.3 2.5E+02 0.0054 27.2 6.0 82 1-90 108-201 (453)
105 TIGR03884 sel_bind_Methan sele 20.0 1.8E+02 0.004 21.2 3.7 39 170-211 26-65 (74)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=1.7e-64 Score=472.34 Aligned_cols=211 Identities=61% Similarity=1.006 Sum_probs=208.2
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|+||++|||+|++||+|||+||.|||++|++||.++|++|++++|++||||||+|++++.+++++.+||+
T Consensus 107 mGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~Af~ 186 (384)
T PRK09330 107 MGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLDAFK 186 (384)
T ss_pred CCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCcc-CCcccccceEEe
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~-~~i~~Ak~ilv~ 159 (266)
.+|++|+++|++|+++|++||++|+||+||+++|++.|.++||+|+++|++|+.+|+++||++|||+ .++++|+++|+|
T Consensus 187 ~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~~~G~a~~G~G~a~g~~ra~~A~~~Ai~spLl~~~~i~~A~~vLv~ 266 (384)
T PRK09330 187 AADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLAMMGIGEASGEDRAREAAEKAISSPLLEDVDISGAKGVLVN 266 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHhcCCeEEEEEEEecCccHHHHHHHHHHhCcCcCCCChhhcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 689999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeecC
Q 024548 160 ITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGF 211 (266)
Q Consensus 160 i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg~ 211 (266)
|++++++++.|+++++++|++.++++++|+||+++||+++++++||||||||
T Consensus 267 I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtviatG~ 318 (384)
T PRK09330 267 ITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELGDEIRVTVIATGF 318 (384)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCcCCeEEEEEEEccC
Confidence 9999999999999999999999999999999999999999999999999999
No 2
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=3.2e-58 Score=429.70 Aligned_cols=256 Identities=43% Similarity=0.717 Sum_probs=227.1
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|+|++++++++++|++||++||.|||++|++||.++|++|++++|++|+||||+|++++ +++++.++|+
T Consensus 122 LGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~af~ 200 (378)
T PRK13018 122 MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIADAFS 200 (378)
T ss_pred ccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCccCCcccccceEEee
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNI 160 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~~~i~~Ak~ilv~i 160 (266)
.+|++|+++|++|++++++||++|+||+||+++|++.|.++||+|+++|++|+.+|+++||.+|||++++++|+++|+||
T Consensus 201 ~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~~~G~a~iG~G~a~g~~r~~~Av~~Al~spLL~~di~~A~~~Lv~I 280 (378)
T PRK13018 201 VADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVAMMGVGEAKGQNRAMEAVRAALANPLLDVDYRGAKGALVHI 280 (378)
T ss_pred HHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhccCCEEEEEEEEecCCcHHHHHHHHHHhCCCcCCChhhhceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeecCCCCccccCCcccccccccCCccccCCCCC
Q 024548 161 TGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAFGINRRP 240 (266)
Q Consensus 161 ~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (266)
++++++++.|+++++++|++.++++++|+||++++|+++++++||||||||+++...... ....+...... ..
T Consensus 281 ~g~~~l~l~ev~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~v~VtvIatG~~~~~~~~~~--~~~~~~~~~~~--~~--- 353 (378)
T PRK13018 281 TGGPDLTLKEANEAASRITEELDPEANIIWGARIDPDMEGKVRVMVIMTGVKSAQILGPG--TQPQAIISRRS--GE--- 353 (378)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEEeCCCCccccCCc--ccccccccccc--cc---
Confidence 999999999999999999999999999999999999999999999999999876432111 10000000000 00
Q ss_pred CCCCCCCccccchhhhhcCCCCCCC
Q 024548 241 SSFSEGGSVEIPEFLKKKGRSRFPR 265 (266)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~~~~~~~ 265 (266)
.....+.+.+|.+++.+....+|.
T Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~ 377 (378)
T PRK13018 354 -RSRGKDELGIDSIVAHQAGLSFPS 377 (378)
T ss_pred -ccccccccccchhhhhccCCCCCC
Confidence 011235677888887777776664
No 3
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=100.00 E-value=7.3e-57 Score=418.29 Aligned_cols=215 Identities=53% Similarity=0.892 Sum_probs=209.2
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|++++++|++++++++|||+||.|||.+|+|||.++|++|++++|++|+||||+|++++.. +++.+||+
T Consensus 111 lGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~af~ 189 (349)
T TIGR00065 111 MGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLNDAFK 189 (349)
T ss_pred ccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999876 99999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcc---hHHHHHHHHhhCCCccCC-cccccce
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKT---RARDAALNAIQSPLLDIG-IERATGI 156 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~---r~~~A~~~Al~spLl~~~-i~~Ak~i 156 (266)
.+|++|+++|++|++++++||.+|+||+|++++|++.|.++||+|.++|++ |+.+|+++|+.+||++.+ +++|+++
T Consensus 190 ~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~~~G~a~iG~g~~~g~~~~~r~~~A~~~al~~pLl~~~~i~~A~~~ 269 (349)
T TIGR00065 190 VADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGA 269 (349)
T ss_pred HHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHhcCCeEEEEEEEecCCcchHHHHHHHHHHHhCCCcCCcccccccEE
Confidence 999999999999999999999999999999999999999999999999999 999999999999999875 9999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeecCCCCcc
Q 024548 157 VWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEE 216 (266)
Q Consensus 157 lv~i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg~~~~~~ 216 (266)
|+||++++++++.|+++++++|++.++++++|+||+++||+++++++||||||||+++..
T Consensus 270 Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~G~~~d~~l~~~i~VtiIatG~~~~~~ 329 (349)
T TIGR00065 270 LVHITGGADLTLLEAEEIQEIITSELDQDANIIWGAIIDPNLEDEIRVTIVATGVKSQIF 329 (349)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCcccCCcEEEEEEEecCCcccc
Confidence 999999999999999999999999999999999999999999999999999999987653
No 4
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.5e-56 Score=407.00 Aligned_cols=213 Identities=59% Similarity=0.929 Sum_probs=209.2
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|||+++|||+|+|||+|||+||.|||.+|+.||..||++|++++|++|+||||+|++..+ +.++.+||+
T Consensus 105 ~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~~~Af~ 183 (338)
T COG0206 105 MGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPIAEAFN 183 (338)
T ss_pred ecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999887 899999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCcc-CCcccccceEEe
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~-~~i~~Ak~ilv~ 159 (266)
.+|++|.+++++|+++|+.||++|+||+|++++|+++|.++||+|.+.+.+|+.+|+++|+++|||+ +++++|+++|+|
T Consensus 184 ~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~A~mG~g~~~~~~r~~~a~~~A~~~pLl~~~~i~gA~~~Lv~ 263 (338)
T COG0206 184 EADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNSPLLDDVDIEGAKGALIN 263 (338)
T ss_pred HHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCCceeEEEeeccchhHHHHHHHHHhcCCcccccccccccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeecCCCC
Q 024548 160 ITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQ 214 (266)
Q Consensus 160 i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg~~~~ 214 (266)
|++++|+++.|+++++++|++..+++++|+||.++||+++++++||+|+||++++
T Consensus 264 i~g~~dl~l~ev~~~~~~i~~~i~~~~~vi~G~~~d~~~~~~v~v~vi~tg~~~~ 318 (338)
T COG0206 264 ITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEVRVLVIATGIRSS 318 (338)
T ss_pred EecCCccCHHHHHHHHHHHHHHhCCCceEEEccccCCCCCceEEEEEEEecccch
Confidence 9999999999999999999999999999999999999999999999999999863
No 5
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=8.3e-55 Score=398.24 Aligned_cols=209 Identities=39% Similarity=0.608 Sum_probs=204.4
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|+|++++||.++++++|||+||.+||.+|+|||.++|++|++++|++|+||||+|++++.+ +++.++|+
T Consensus 94 lGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~~af~ 172 (303)
T cd02191 94 LGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLEGAFD 172 (303)
T ss_pred cCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998864 99999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCcc-CCcccccceEEe
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWN 159 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~-~~i~~Ak~ilv~ 159 (266)
.+|++|++.|++|++++++||++|+||+|++++|++.|.++||+|+++|++|+.+|+++|+++||++ +++++|+++|+|
T Consensus 173 ~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~~~G~a~ig~g~~~g~~~~~~a~~~Al~~pll~~~~~~~A~~~Lv~ 252 (303)
T cd02191 173 HADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLLPCEIEGAEGALLV 252 (303)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCCCCCCCCcccCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeec
Q 024548 160 ITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATG 210 (266)
Q Consensus 160 i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg 210 (266)
|+++++++++|++++.++|+++++++++|+||++.+|+++++++|||||||
T Consensus 253 i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G~~~~~~~~~~v~v~vi~tg 303 (303)
T cd02191 253 MAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIVLTG 303 (303)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeeeCCCCCCeEEEEEEecC
Confidence 999999999999999999999999899999999999999999999999998
No 6
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.2e-54 Score=397.72 Aligned_cols=210 Identities=63% Similarity=0.972 Sum_probs=206.1
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|+++++++++|+++++|||+||.+||.+|+|||.++|++|++++|++++||||+|++++.+++++.++|+
T Consensus 94 lGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~af~ 173 (304)
T cd02201 94 MGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFK 173 (304)
T ss_pred cCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCccC-CcccccceEEe
Q 024548 81 LADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDI-GIERATGIVWN 159 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~~-~i~~Ak~ilv~ 159 (266)
.+|++|+++|++|++++++||++|+||+|++++|++.|.++||+|++++++|+.+|+++||++|||+. ++++|+++|++
T Consensus 174 ~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~G~a~ig~g~~~g~~r~~~Av~~Al~~pLl~~~~i~~A~~~Lv~ 253 (304)
T cd02201 174 LADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLEDDSISGAKGVLVN 253 (304)
T ss_pred HHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCcCcCCCChhcccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 59999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEEeec
Q 024548 160 ITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATG 210 (266)
Q Consensus 160 i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvIatg 210 (266)
|+++++++++|+++++++|++.++++++|+||++++|+++++++|||||||
T Consensus 254 I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~~d~~l~~~v~Vtiiatg 304 (304)
T cd02201 254 ITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTVIATG 304 (304)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCCCCeEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999998
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=2.4e-45 Score=341.72 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=192.6
Q ss_pred CCCCCCCchHHHHHHHHHHc-CCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~-g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af 79 (266)
||||||||++|+|++++++. +++++++++.||.+||.+|+|||.++|++|++++|++|+||||+|++.+ .++.++|
T Consensus 107 lGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~---~~~~~~f 183 (349)
T cd02202 107 LGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKG---ESVEEAY 183 (349)
T ss_pred cCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhc---cchHHHH
Confidence 89999999999999999985 6899999999999999999999999999999999999999999999975 3678999
Q ss_pred HHHHHHHHhhhhhcccceec-----CceeeechHHHHHhhhccCceeEEEeeecC-----------------------cc
Q 024548 80 NLADDILRQGVRGISDIITI-----PGLVNVDFADVRAIMANAGSSLMGIGTATG-----------------------KT 131 (266)
Q Consensus 80 ~~~n~vl~~~I~gIt~~i~~-----~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g-----------------------~~ 131 (266)
+.+|++|++.|++++.++++ ||++|+||+|++++|+++|.++||+|.+++ .+
T Consensus 184 ~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~G~~~iG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (349)
T cd02202 184 DRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGYAREDLETGPSDGKFRLREEDDEVDEKESIS 263 (349)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccCCeEEEEEEEEcccccccccccccccccccccccchhh
Confidence 99999999999999999988 999999999999999999999999999987 78
Q ss_pred hHHHHHHHHhhCCCc-cCCcccccceEEeecCCCC-CCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCCC-CCeEEEEEEe
Q 024548 132 RARDAALNAIQSPLL-DIGIERATGIVWNITGGSD-LTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSL-SGQVSITLIA 208 (266)
Q Consensus 132 r~~~A~~~Al~spLl-~~~i~~Ak~ilv~i~~g~d-i~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~-~~~v~VtvIa 208 (266)
|+.+|+++|+.+||+ ++++.+|+++|++|+++++ ++++|++++.+||++..+ ++.||...+|.+ .++|+||||+
T Consensus 264 r~~~a~~~a~~~~L~~~~d~~~A~~~Li~i~g~~~~l~~~~~~~~~~~i~~~~~---~~~~~~g~~p~~~~~~v~v~vi~ 340 (349)
T cd02202 264 RITTLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGRKWLDEEIG---GVEVRSGDYPVPGGDEVAVLVLL 340 (349)
T ss_pred HHHHHHHHHHcCCCCCCCCcccCcEEEEEEEeCccccCHHHHHHHHHHHHHHcC---CeEEEEEecCCCCCCeEEEEEEE
Confidence 999999999999998 4899999999999999985 999999999999999986 455655577776 5799999999
Q ss_pred ecCCCC
Q 024548 209 TGFKRQ 214 (266)
Q Consensus 209 tg~~~~ 214 (266)
||++..
T Consensus 341 tG~~~~ 346 (349)
T cd02202 341 SGISEI 346 (349)
T ss_pred cCCCCC
Confidence 999754
No 8
>COG5023 Tubulin [Cytoskeleton]
Probab=99.97 E-value=5.5e-32 Score=246.50 Aligned_cols=208 Identities=13% Similarity=0.198 Sum_probs=178.2
Q ss_pred CCCCCCCchH-HHHHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGA-PVIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaa-pvia~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
+|||||||.+ .++.+|+.||+ ++|++|+|.|..++.++++||+.+++++|.+++|+++|+||++|+++|.+++.+.
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~ 218 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQ 218 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCC
Confidence 6999999995 56999999998 7899999999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcchHHHHHH----HHhhCCCc----
Q 024548 77 E-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTRARDAAL----NAIQSPLL---- 146 (266)
Q Consensus 77 ~-af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r~~~A~~----~Al~spLl---- 146 (266)
. .|..+|++|++.|+++|.+|||||++|+|+..+.++|.|+ .+||+.++++|.......+.+ ..+...+|
T Consensus 219 ~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N 298 (443)
T COG5023 219 NPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKN 298 (443)
T ss_pred CCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCccc
Confidence 5 9999999999999999999999999999999999999998 699999999996554433333 23333444
Q ss_pred ---cCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCC---CCCeEEEEEEe
Q 024548 147 ---DIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPS---LSGQVSITLIA 208 (266)
Q Consensus 147 ---~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~---~~~~v~VtvIa 208 (266)
.+++...+++-+......++.++|+++++..|+++-. .+..+++|++..++ -+-++++++|+
T Consensus 299 ~mv~~dpr~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~ls 372 (443)
T COG5023 299 QMVSCDPRKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLS 372 (443)
T ss_pred ceeeecCCCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeec
Confidence 3567767776655444449999999999999999833 47899999998877 45677777775
No 9
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.96 E-value=1.9e-29 Score=233.32 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=176.4
Q ss_pred CCCCCCCchHHHHHHHHHH-cC-CcEEEEEecCCcchh-hHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH-
Q 024548 1 MGGGTGTGGAPVIAGVAKS-MG-ILTVGIVTTPFSFEG-RRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT- 76 (266)
Q Consensus 1 lGGGTGSGaapvia~iake-~g-~ltv~Vvt~Pf~~Eg-~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~- 76 (266)
||||||||++|++++.+++ |+ .+++++++.||.+|+ .+|+|||.+++++|.+++|.+|++||++|++++.+.+.+.
T Consensus 98 lgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~ 177 (328)
T cd00286 98 LGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDK 177 (328)
T ss_pred cCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCC
Confidence 7999999999998887666 65 689999999999998 9999999999999999999999999999999886655554
Q ss_pred HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCc---------chHHHHHHHHhhCCCc
Q 024548 77 EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGK---------TRARDAALNAIQSPLL 146 (266)
Q Consensus 77 ~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~---------~r~~~A~~~Al~spLl 146 (266)
.+|..+|++|++++.+++..+|+||.+|+||.++.++|.++ +.+++..|+++.. .+..+++++++.+++.
T Consensus 178 ~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (328)
T cd00286 178 PTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQ 257 (328)
T ss_pred CCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCe
Confidence 59999999999999999999999999999999999999997 6899999998753 3678889999988865
Q ss_pred c----CCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEEEeCCCC-CCeEEEEEEee
Q 024548 147 D----IGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD----PTANLIFGAVIDPSL-SGQVSITLIAT 209 (266)
Q Consensus 147 ~----~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~----~~a~Ii~G~~~d~~~-~~~v~VtvIat 209 (266)
. ++...+..+++.+.| +.++.++.++..+++++.. .+..+++|.+..|.. +.+..+++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~rG--~~~~~~v~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~N 327 (328)
T cd00286 258 MVVCDPTHGGYIAALLLVRG--PVSPSEVREGIARVAPRTSHLSWSPPGIKVGVSPTPPASEHKVSALLLSN 327 (328)
T ss_pred eeccCCCccchHHHHHHHhC--CCChHHHHHHHHHHHHhCCcCCcCCCCEeEeecCCCCCCCcCeEEEEecc
Confidence 3 233344444444433 5799999999999999865 367899999988887 78899999875
No 10
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=99.94 E-value=2.7e-26 Score=176.30 Aligned_cols=95 Identities=51% Similarity=0.852 Sum_probs=87.9
Q ss_pred CceeEEEeeecCcchHHHHHHHHhhCCCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q 024548 118 GSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPS 197 (266)
Q Consensus 118 g~a~~g~G~a~g~~r~~~A~~~Al~spLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~ 197 (266)
|.++||+|+++|++|+.+|+++||++|||+.++++|+++|+||++++++++.|++++++.|+++++++++|+||+++||+
T Consensus 1 G~A~iGiG~a~G~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~ 80 (95)
T PF12327_consen 1 GRAMIGIGEASGENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEE 80 (95)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TT
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeecCC
Q 024548 198 LSGQVSITLIATGFK 212 (266)
Q Consensus 198 ~~~~v~VtvIatg~~ 212 (266)
++++++||+|||||+
T Consensus 81 l~d~i~VtiIaTG~~ 95 (95)
T PF12327_consen 81 LEDEIRVTIIATGFD 95 (95)
T ss_dssp GTTEEEEEEEEECEG
T ss_pred CCCeEEEEEEEEcCC
Confidence 999999999999984
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=99.92 E-value=6.7e-25 Score=211.11 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=161.2
Q ss_pred CCCCCCCchHHHHHHHH-HHcC-CcEEEEEecCCcc-hhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH-
Q 024548 1 MGGGTGTGGAPVIAGVA-KSMG-ILTVGIVTTPFSF-EGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT- 76 (266)
Q Consensus 1 lGGGTGSGaapvia~ia-ke~g-~ltv~Vvt~Pf~~-Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~- 76 (266)
||||||||+++.|++.. .+|+ +.+++++..|+.. +..+++||+.++|++|.+++|+++++|||+|+++|.+.+.+.
T Consensus 140 lgGGTGSGlgs~lle~l~d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~ 219 (465)
T PTZ00387 140 LGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKK 219 (465)
T ss_pred cCCCcchhHHHHHHHHHHHhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccc
Confidence 79999999998876654 5576 4456666666653 446799999999999999999999999999999997666554
Q ss_pred ---------------------------HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeec
Q 024548 77 ---------------------------EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTAT 128 (266)
Q Consensus 77 ---------------------------~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~ 128 (266)
..|+.+|++|++.++++|.++|+||.+|+|+.|+.++|.|+ .++|+..+.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P 299 (465)
T PTZ00387 220 KKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAP 299 (465)
T ss_pred cccccccccccccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCc
Confidence 68999999999999999999999999999999999999998 59999999987
Q ss_pred Ccch---------HHHHHHHHhhC--CCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEEE
Q 024548 129 GKTR---------ARDAALNAIQS--PLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD----PTANLIFGAV 193 (266)
Q Consensus 129 g~~r---------~~~A~~~Al~s--pLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~----~~a~Ii~G~~ 193 (266)
-... ..+...+.+.. .+..++....+.+.+.+..+.++...|+.+.+..+++... .+..+..|.+
T Consensus 300 ~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~~~f~~W~p~~~~~~~~ 379 (465)
T PTZ00387 300 LVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQLNMIYWNEDGFKTGLC 379 (465)
T ss_pred ccchhhcccccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhccccccccCCCceEEEee
Confidence 5221 22222333321 1333455566666655554447889999999999987532 1457888888
Q ss_pred eCCCCCCeEEEEEEee
Q 024548 194 IDPSLSGQVSITLIAT 209 (266)
Q Consensus 194 ~d~~~~~~v~VtvIat 209 (266)
..+..+....+++++-
T Consensus 380 ~~~~~~~~~s~~~lsN 395 (465)
T PTZ00387 380 NVSPLGQPYSLLCLAN 395 (465)
T ss_pred ccCCCCCceeEEEecC
Confidence 7777776777777764
No 12
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.91 E-value=2.3e-24 Score=203.32 Aligned_cols=209 Identities=14% Similarity=0.193 Sum_probs=162.7
Q ss_pred CCCCCCCchHHHHHHHHHH-cC-CcEEEEEecCCcchh--hHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPVIAGVAKS-MG-ILTVGIVTTPFSFEG--RRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapvia~iake-~g-~ltv~Vvt~Pf~~Eg--~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||+++++.+.++| |+ +.++++++.|+.+++ .+++||+.++|++|.+++|.+|++||++|.+++.+.+.+.
T Consensus 98 l~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~ 177 (382)
T cd06059 98 LGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDID 177 (382)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCC
Confidence 7999999999998887665 65 667777777777765 8999999999999999999999999999999987665664
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhccC-ceeEEEeeecCcch---------HHHHHHHHhh--C
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAG-SSLMGIGTATGKTR---------ARDAALNAIQ--S 143 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g-~a~~g~G~a~g~~r---------~~~A~~~Al~--s 143 (266)
.+|..+|++|++++.+++..+|+||.+|+|+.|+.++|.|++ ++|+..+.+|.... ..+-.++.+. +
T Consensus 178 ~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (382)
T cd06059 178 EPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDN 257 (382)
T ss_pred CCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhccc
Confidence 599999999999999999999999999999999999999984 79999999885321 1222222222 1
Q ss_pred CCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEEEeCCCC-CCeEEEEEEee
Q 024548 144 PLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD----PTANLIFGAVIDPSL-SGQVSITLIAT 209 (266)
Q Consensus 144 pLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~----~~a~Ii~G~~~d~~~-~~~v~VtvIat 209 (266)
.+.+++....+.+.+.+..+.++...++.+.+..++.+.. .+..+.++.+..+.. +.+..+++++.
T Consensus 258 ~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~s~~~l~N 328 (382)
T cd06059 258 SFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQSWIPDGFKVSNCKKPPRAELGKSALFLSN 328 (382)
T ss_pred ceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccCCCCcEEEEecCCCCCcCcceeEEEecC
Confidence 1223444555555555544448899999999999887753 246788888877666 55666776654
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.91 E-value=3.1e-24 Score=202.21 Aligned_cols=198 Identities=13% Similarity=0.190 Sum_probs=153.3
Q ss_pred CCCCCCCchHHHHHHHH-HHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPVIAGVA-KSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapvia~ia-ke~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||+++.+.+.. .+|+ +++++|+|.+. .+..+++||+.++|++|.+++|.++++|||+|.
T Consensus 108 l~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~---------- 176 (379)
T cd02190 108 LGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV---------- 176 (379)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH----------
Confidence 79999999999877765 4576 56666666664 455779999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcc---------hHHHHHHHHhh--CC
Q 024548 77 EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKT---------RARDAALNAIQ--SP 144 (266)
Q Consensus 77 ~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~---------r~~~A~~~Al~--sp 144 (266)
+|+.+|++|++.+++++..+|+||.+|+|+.|+.++|.|+ .++|+..+.+|-.. ...+..+..+. +.
T Consensus 177 -~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~ 255 (379)
T cd02190 177 -PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQ 255 (379)
T ss_pred -HHHHHHHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccc
Confidence 7999999999999999999999999999999999999998 59999999887422 12333334332 22
Q ss_pred CccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEEEeCCCCCCeEEEEEEeec
Q 024548 145 LLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD----PTANLIFGAVIDPSLSGQVSITLIATG 210 (266)
Q Consensus 145 Ll~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~----~~a~Ii~G~~~d~~~~~~v~VtvIatg 210 (266)
+..+++...+.+.+.+..+.+++..|+.+.+..++++.. .+..+..+.+..+..+.+..+++++-.
T Consensus 256 m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNs 325 (379)
T cd02190 256 LIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANN 325 (379)
T ss_pred eeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhccCcCcCcCCCcEEEeecccCCCCcceeEEEecCc
Confidence 334455566666655554448999999999998887632 135677777766666666777777543
No 14
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.91 E-value=3.7e-24 Score=204.42 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=160.5
Q ss_pred CCCCCCCchHHHH-HHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPVI-AGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapvi-a~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||.++.+ ..+..+|+ +.+++|+|.+...|..+++||+.++|++|.+++|.++++|||+|.++|...+.+.
T Consensus 138 l~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~ 217 (425)
T cd02187 138 LGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLT 217 (425)
T ss_pred cCCCccccHHHHHHHHHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCC
Confidence 7999999998764 55677788 6677788877777999999999999999999999999999999999997766665
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch---------HHHHHHHHhh--C
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR---------ARDAALNAIQ--S 143 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r---------~~~A~~~Al~--s 143 (266)
.+|..+|++|++.++++|..+||||.+|.|+.++.++|.|+ .++|+..+.+|-... ..+.+++.+. +
T Consensus 218 ~~~~~~~N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 297 (425)
T cd02187 218 NPTYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 297 (425)
T ss_pred CCCHHHHHHHHhccccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccC
Confidence 59999999999999999999999999999999999999998 599999999875321 1222222211 1
Q ss_pred CCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCCCCeEEEEEEee
Q 024548 144 PLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSLSGQVSITLIAT 209 (266)
Q Consensus 144 pLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~~~~v~VtvIat 209 (266)
.+..+++...+.+.+.+..+.++...|+.+.+..++++-. .+..+..+.+..+..+-+..+++++-
T Consensus 298 ~~~~~~~~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N 369 (425)
T cd02187 298 MMAACDPRHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGN 369 (425)
T ss_pred eeeccCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecC
Confidence 1112334445555554444347999999999999977632 13567777776665555666766653
No 15
>PLN00220 tubulin beta chain; Provisional
Probab=99.91 E-value=6e-24 Score=204.18 Aligned_cols=209 Identities=16% Similarity=0.219 Sum_probs=165.8
Q ss_pred CCCCCCCchHHH-HHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPV-IAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapv-ia~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||+++. +..++.+|+ +.+++|+|.|+..|+.+++|||.++|+.|.+++|++|++||++|.++|.+...+.
T Consensus 139 l~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~ 218 (447)
T PLN00220 139 LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT 218 (447)
T ss_pred cCCCccccHHHHHHHHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCC
Confidence 799999999875 666788887 7799999999989999999999999999999999999999999999998777775
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch---------HHHHHHHHhh--C
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR---------ARDAALNAIQ--S 143 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r---------~~~A~~~Al~--s 143 (266)
.+|+.+|++|++.++++|..+||||.+|.|+.++.++|.|+ .++|+..+.+|-... ..+-+++.+. +
T Consensus 219 ~~sf~~~N~lIa~~is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n 298 (447)
T PLN00220 219 TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298 (447)
T ss_pred CCChHHHHhHhhccccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhh
Confidence 59999999999999999999999999999999999999998 599999999874221 1111222121 1
Q ss_pred CCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCCCCeEEEEEEee
Q 024548 144 PLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSLSGQVSITLIAT 209 (266)
Q Consensus 144 pLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~~~~v~VtvIat 209 (266)
.+..+++...+.+.+.+..+.++...|+.+....++.+-. .+..+..+.+..+..+-+..+++++-
T Consensus 299 ~l~~~~~~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N 370 (447)
T PLN00220 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGN 370 (447)
T ss_pred cccccCCCCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecC
Confidence 1223444455666655554448999999999998866521 14578888887777666777777764
No 16
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.90 E-value=1.2e-23 Score=200.89 Aligned_cols=208 Identities=13% Similarity=0.140 Sum_probs=160.2
Q ss_pred CCCCCCCchHHHHH-HHHHHcC---CcEEEEEecCCc-chhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCH
Q 024548 1 MGGGTGTGGAPVIA-GVAKSMG---ILTVGIVTTPFS-FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (266)
Q Consensus 1 lGGGTGSGaapvia-~iake~g---~ltv~Vvt~Pf~-~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l 75 (266)
||||||||.+++|. .+..+|+ +.+++|+|.|.. .+..+++|||.++|+.|.+++|.++++|||+|.++|.+.+.+
T Consensus 139 lgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~ 218 (431)
T cd02188 139 IAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHI 218 (431)
T ss_pred CCCCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCC
Confidence 79999999988655 5677787 455556555543 366799999999999999999999999999999999887777
Q ss_pred H-HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch----------HHHHHHHHhh-
Q 024548 76 T-EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR----------ARDAALNAIQ- 142 (266)
Q Consensus 76 ~-~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r----------~~~A~~~Al~- 142 (266)
. ..|..+|++|++.++++|..+|+||.+|.|+.++.++|.|+ .++|+..+.+|-... ..+.++..+.
T Consensus 219 ~~~~~~~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~ 298 (431)
T cd02188 219 QNPTFDQINSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQP 298 (431)
T ss_pred CCCCHHHHHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhcc
Confidence 6 48999999999999999999999999999999999999998 699999999975321 1222222222
Q ss_pred -CCCccCCc-ccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCC---CCeEEEEEEe
Q 024548 143 -SPLLDIGI-ERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSL---SGQVSITLIA 208 (266)
Q Consensus 143 -spLl~~~i-~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~---~~~v~VtvIa 208 (266)
+.+..+++ ...+.+.+.+..+.++...|+.+.+..++++.. .+..+.+|.+..+.. +.+..+++|+
T Consensus 299 ~n~m~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~ls 375 (431)
T cd02188 299 KNIMVSTATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLA 375 (431)
T ss_pred ccceeecCCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEec
Confidence 11334455 566667666554449999999999999987632 145788888866553 3356777775
No 17
>PTZ00010 tubulin beta chain; Provisional
Probab=99.90 E-value=7.6e-24 Score=203.25 Aligned_cols=210 Identities=16% Similarity=0.234 Sum_probs=165.8
Q ss_pred CCCCCCCchHHH-HHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPV-IAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapv-ia~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||.+.. +..+..+|+ +.+++|+|.|...+..+++||+.++++.|.+++|.+|++|||+|+++|.+.+.+.
T Consensus 139 l~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~ 218 (445)
T PTZ00010 139 LGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLT 218 (445)
T ss_pred cCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCC
Confidence 699999999776 555677898 6778888887777889999999999999999999999999999999998877776
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcchH----HHHHHHHhhCCCc----
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTRA----RDAALNAIQSPLL---- 146 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r~----~~A~~~Al~spLl---- 146 (266)
..|..+|++|+|.++++|..+||||.+|.|+.++.++|.|+ .++|+..+++|-.... .+.....|.+.++
T Consensus 219 ~p~~~~lN~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n 298 (445)
T PTZ00010 219 TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKN 298 (445)
T ss_pred CCCHHHHHHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccc
Confidence 49999999999999999999999999999999999999998 6999999998853211 1111122222333
Q ss_pred ---cCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCCCCeEEEEEEeec
Q 024548 147 ---DIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSLSGQVSITLIATG 210 (266)
Q Consensus 147 ---~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~~~~v~VtvIatg 210 (266)
.+++...+.+.+.+..+.++...|+.+++..++++-. .+..+..+.+..+..+-+..+++++-.
T Consensus 299 ~~~~~~~~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNs 371 (445)
T PTZ00010 299 MMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNS 371 (445)
T ss_pred eEeecCCCcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCC
Confidence 2344566666665554458999999999999876521 145788888877766667777777644
No 18
>PLN00222 tubulin gamma chain; Provisional
Probab=99.90 E-value=1.2e-23 Score=202.16 Aligned_cols=209 Identities=14% Similarity=0.171 Sum_probs=158.7
Q ss_pred CCCCCCCchHHHHH-HHHHHcC---CcEEEEEecCC-cchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCH
Q 024548 1 MGGGTGTGGAPVIA-GVAKSMG---ILTVGIVTTPF-SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (266)
Q Consensus 1 lGGGTGSGaapvia-~iake~g---~ltv~Vvt~Pf-~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l 75 (266)
||||||||.++.+. ++..+|+ +.+++|+|.|. ..+..+++||+.++|+.|.+++|.++++||++|.++|.+.+.+
T Consensus 141 l~GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i 220 (454)
T PLN00222 141 IAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHL 220 (454)
T ss_pred CCCCccchHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCC
Confidence 79999999988655 4566787 44555555543 3455699999999999999999999999999999999888877
Q ss_pred H-HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch----------HHHHHHHHhh-
Q 024548 76 T-EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR----------ARDAALNAIQ- 142 (266)
Q Consensus 76 ~-~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r----------~~~A~~~Al~- 142 (266)
. ..|..+|++|++.++++|..+||||.+|.|+.++.++|.|+ .+||+..+.+|-... ..+-+++.+.
T Consensus 221 ~~p~~~dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~ 300 (454)
T PLN00222 221 ENPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQT 300 (454)
T ss_pred CCCCHHHHHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcc
Confidence 7 48999999999999999999999999999999999999998 599999999875321 1233333332
Q ss_pred -CCCccCCccc-----ccceEEeecCCCCCCHHHHHHHHHHHHhh--cC----CCCcEEEEEEeCCCC---CCeEEEEEE
Q 024548 143 -SPLLDIGIER-----ATGIVWNITGGSDLTLFEVNAAAEVIYDL--VD----PTANLIFGAVIDPSL---SGQVSITLI 207 (266)
Q Consensus 143 -spLl~~~i~~-----Ak~ilv~i~~g~di~l~ei~~~~~~i~~~--~~----~~a~Ii~G~~~d~~~---~~~v~VtvI 207 (266)
+.+.++++.. .+.+.+.+..+.+++..|+.+.+..++++ .. .+..+.+|++..+.. +.+..+++|
T Consensus 301 ~n~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~l 380 (454)
T PLN00222 301 KNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLML 380 (454)
T ss_pred cCceeecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEE
Confidence 1122344332 45555444433489999999999999876 21 245788888876664 345667777
Q ss_pred ee
Q 024548 208 AT 209 (266)
Q Consensus 208 at 209 (266)
+-
T Consensus 381 sN 382 (454)
T PLN00222 381 AN 382 (454)
T ss_pred eC
Confidence 53
No 19
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.90 E-value=4.3e-23 Score=197.58 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=159.0
Q ss_pred CCCCCCCchHHHHH-HHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPVIA-GVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapvia-~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||.++.+. .+..+|+ +.+++|+|.+...++.+++||+.++|+.|.+++|.++++|||+|.++|.....+.
T Consensus 140 l~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~ 219 (434)
T cd02186 140 FGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIE 219 (434)
T ss_pred cCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCC
Confidence 79999999987655 5677788 5556666665556889999999999999999999999999999999998888877
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch---------HHHHHHHHhhC--
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR---------ARDAALNAIQS-- 143 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r---------~~~A~~~Al~s-- 143 (266)
.+|..+|++|++.+.+++..+|+||..|.|+.++.++|.|+ .++|+..+.+|-... ..+.+++.+..
T Consensus 220 ~~~~~~lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 299 (434)
T cd02186 220 RPTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPAN 299 (434)
T ss_pred CCCHHHHHHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccc
Confidence 69999999999999999999999999999999999999998 599999999874321 22333333322
Q ss_pred CCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCC--------CCeEEEEEEe
Q 024548 144 PLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSL--------SGQVSITLIA 208 (266)
Q Consensus 144 pLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~--------~~~v~VtvIa 208 (266)
.++.+++...+.+.+.+..+.+++..|+.+++..++++-. .+..+.++++..+.. +.+..+++++
T Consensus 300 ~m~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 378 (434)
T cd02186 300 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 378 (434)
T ss_pred eeeecCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEec
Confidence 1334455566666655554458999999999998866521 134577777665443 1235566665
No 20
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.89 E-value=2.8e-23 Score=199.38 Aligned_cols=209 Identities=15% Similarity=0.216 Sum_probs=157.3
Q ss_pred CCCCCCCchHHHHH-HHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAPVIA-GVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaapvia-~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||.++.|. .+..+|+ +.+++|+|.|...|..+++||+.++|+.|.+++|.++++||++|+++|...+.+.
T Consensus 141 l~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~ 220 (448)
T PTZ00335 141 VGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIE 220 (448)
T ss_pred cCCCccchHHHHHHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCC
Confidence 69999999977655 5667787 5566666666567899999999999999999999999999999999997777766
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch---------HHHHHHHHhhCC-
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR---------ARDAALNAIQSP- 144 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r---------~~~A~~~Al~sp- 144 (266)
.+|..+|++|++.+.++|..+|+||.+|.|+.++.++|.|+ .++|+..+.+|-... ..+.+.+.+...
T Consensus 221 ~~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n 300 (448)
T PTZ00335 221 RPTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPAN 300 (448)
T ss_pred CCCHHHHHHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccc
Confidence 59999999999999999999999999999999999999998 599999999875321 222222222111
Q ss_pred -CccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCCC--------CCeEEEEEEee
Q 024548 145 -LLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPSL--------SGQVSITLIAT 209 (266)
Q Consensus 145 -Ll~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~~--------~~~v~VtvIat 209 (266)
+..+++...+.+.+.+..+.++...++.+.+..++++-. -+..+.++++..+.. +-+..+++|+-
T Consensus 301 ~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsN 380 (448)
T PTZ00335 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN 380 (448)
T ss_pred eeEecCCCccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecC
Confidence 112344556666555543348999999999999977622 134577777755432 12455666653
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.89 E-value=2.5e-23 Score=178.88 Aligned_cols=101 Identities=55% Similarity=0.901 Sum_probs=97.7
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHH
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~ 80 (266)
||||||||++|++++++++|++.++++++.||.+|+..++|||.++|++|++++|+++++|||+|++++.+++++.++|+
T Consensus 92 lgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~~~~~~ 171 (192)
T smart00864 92 MGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPIRPAFK 171 (192)
T ss_pred CCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCchHHHH
Confidence 79999999999999999999998899999999999999999999999999999999999999999999988888889999
Q ss_pred HHHHHHHhhhhhcccceecCc
Q 024548 81 LADDILRQGVRGISDIITIPG 101 (266)
Q Consensus 81 ~~n~vl~~~I~gIt~~i~~~G 101 (266)
.+|++|++.|+++++++|+||
T Consensus 172 ~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 172 DANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999987
No 22
>PLN00221 tubulin alpha chain; Provisional
Probab=99.89 E-value=1.2e-22 Score=195.05 Aligned_cols=197 Identities=15% Similarity=0.221 Sum_probs=154.9
Q ss_pred CCCCCCCchHH-HHHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGAP-VIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaap-via~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||||.+. ++..+..+|+ +.+++|+|.|...+..+++||+.++++.|.+++|.++++||++|.++|...+.+.
T Consensus 141 l~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~ 220 (450)
T PLN00221 141 VGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIE 220 (450)
T ss_pred cCCCccchHHHHHHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCC
Confidence 69999999965 5677788887 7789999988777888999999999999999999999999999999998877776
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcch---------HHHHHHHHhhCC-
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTR---------ARDAALNAIQSP- 144 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r---------~~~A~~~Al~sp- 144 (266)
..|..+|++|++.++++|.++||||.+|.|+.++.++|.|+ .++|+..+.+|-... ..+.+.+.+...
T Consensus 221 ~p~~~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~ 300 (450)
T PLN00221 221 RPTYTNLNRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300 (450)
T ss_pred CCCHHHHHHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccc
Confidence 48999999999999999999999999999999999999998 599999999884221 222222222211
Q ss_pred -CccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC------CCCcEEEEEEeCCC
Q 024548 145 -LLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD------PTANLIFGAVIDPS 197 (266)
Q Consensus 145 -Ll~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~------~~a~Ii~G~~~d~~ 197 (266)
+..+++...+.+.+.+..+.++...|+.+++..++.+-. -+..+.++++..+.
T Consensus 301 ~l~~~~~~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~ 360 (450)
T PLN00221 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360 (450)
T ss_pred eeeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCC
Confidence 112344455666555554448999999999999865521 14457777765543
No 23
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.79 E-value=1.4e-18 Score=167.05 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=145.3
Q ss_pred CCCCCCCchHHHHH-HHHHHcC-CcEEEEEecCCc-chhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH-
Q 024548 1 MGGGTGTGGAPVIA-GVAKSMG-ILTVGIVTTPFS-FEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT- 76 (266)
Q Consensus 1 lGGGTGSGaapvia-~iake~g-~ltv~Vvt~Pf~-~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~- 76 (266)
||||||||+++.|. ++..+|+ ...+++++.|+. .|..+++|||.++|++|.+++|.++++|||+|.++|.....+.
T Consensus 135 l~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~ 214 (446)
T cd02189 135 LAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKN 214 (446)
T ss_pred CCCCcchHHHHHHHHHHHHhcCccceeeeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCC
Confidence 79999999987655 5666687 345555555653 5788999999999999999999999999999999997766666
Q ss_pred HHHHHHHHHHHhhhhhcccceec-C-------ceeeechHHHHHhhhcc-CceeEEEeeecCcc---------hHHHHHH
Q 024548 77 EAFNLADDILRQGVRGISDIITI-P-------GLVNVDFADVRAIMANA-GSSLMGIGTATGKT---------RARDAAL 138 (266)
Q Consensus 77 ~af~~~n~vl~~~I~gIt~~i~~-~-------G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~---------r~~~A~~ 138 (266)
..|..+|++|++.+.+++..+++ | |..|.|+.++.++|.|+ .++|+..+.+|... ...+.++
T Consensus 215 ~~~~~~N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~ 294 (446)
T cd02189 215 VSLSDINKVIAHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLK 294 (446)
T ss_pred CCHHHHHHHHHHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHH
Confidence 49999999999999999998876 6 44799999999999998 59999999987532 1223233
Q ss_pred HHh----hCCCc-c-------------------CCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC----CCCcEEE
Q 024548 139 NAI----QSPLL-D-------------------IGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD----PTANLIF 190 (266)
Q Consensus 139 ~Al----~spLl-~-------------------~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~----~~a~Ii~ 190 (266)
+.. ....+ + ++....+.+.+.+..+.+....++.+.+ ++... .+..+.+
T Consensus 295 ~l~qm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~---~~~~~f~~W~p~~~~~ 371 (446)
T cd02189 295 RLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF---RDPLLYVNWSPSPVRF 371 (446)
T ss_pred HHHHhhccccccccccccccccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH---hccCcCCCcCCCCEee
Confidence 322 11122 1 1223444454444433366777776543 33221 2456777
Q ss_pred EEEeCCCC--CCeEEEEEEeec
Q 024548 191 GAVIDPSL--SGQVSITLIATG 210 (266)
Q Consensus 191 G~~~d~~~--~~~v~VtvIatg 210 (266)
+++..+.. +.+..+++++..
T Consensus 372 ~~~~~~~~~~~~~~s~~~l~Ns 393 (446)
T cd02189 372 SISSHKRSFSKYEKSVTLVSNS 393 (446)
T ss_pred eecCCCCCcCCcceeEEEEeCC
Confidence 77655443 245667766543
No 24
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=99.73 E-value=1.4e-17 Score=152.87 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=143.4
Q ss_pred CCCCCCCchHH-HHHHHHHHcC---CcEEEEEecCC-cchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCH
Q 024548 1 MGGGTGTGGAP-VIAGVAKSMG---ILTVGIVTTPF-SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPV 75 (266)
Q Consensus 1 lGGGTGSGaap-via~iake~g---~ltv~Vvt~Pf-~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l 75 (266)
+.||||||.+. ++.++..+|+ +-|++|+|.-- .+|-++.+||..++|++|.+++|+++|+||++|.+++.+.+.+
T Consensus 141 iAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i 220 (448)
T KOG1374|consen 141 IAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHI 220 (448)
T ss_pred ecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcC
Confidence 57999999955 6888888898 67999998863 5788899999999999999999999999999999999988888
Q ss_pred HH-HHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcchHHH--HHHHHh----hCCCcc
Q 024548 76 TE-AFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTRARD--AALNAI----QSPLLD 147 (266)
Q Consensus 76 ~~-af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r~~~--A~~~Al----~spLl~ 147 (266)
.. .|..+|++++..++..|..+|+||+.|-|+.++..-|.|. .+||+.+|+.|....... |++++- .-.||.
T Consensus 221 ~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~ 300 (448)
T KOG1374|consen 221 QNPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQ 300 (448)
T ss_pred CCCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhC
Confidence 85 8999999999999999999999999999999999999998 599999999985332211 223221 111221
Q ss_pred -------C-CcccccceE---EeecCCCCCCHHHHHHHHHHHHhh
Q 024548 148 -------I-GIERATGIV---WNITGGSDLTLFEVNAAAEVIYDL 181 (266)
Q Consensus 148 -------~-~i~~Ak~il---v~i~~g~di~l~ei~~~~~~i~~~ 181 (266)
. +...+.-.+ .|+..| .+...++..++..++++
T Consensus 301 pkn~mvs~~~~~~~~~~~~si~n~iqg-~vdp~~v~~s~~r~~dr 344 (448)
T KOG1374|consen 301 PKNMMVSTADDLSGNPCYISILNIIQG-EVDPTQVHKSLQRIRDR 344 (448)
T ss_pred cchhhhhccccccCCcchHhHHhhhhc-ccCHHHHHHHHHHHHhc
Confidence 1 111122222 344444 78999999999999887
No 25
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.71 E-value=1.1e-17 Score=146.38 Aligned_cols=81 Identities=30% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCCCCCCchHHHHHHHHHHc--CCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH-H
Q 024548 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT-E 77 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~--g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~-~ 77 (266)
||||||||++|+|++.+++. +++++++++.||.+|+.+++|||.++|++|.+++|++|++|||+|+++|.++++++ +
T Consensus 133 lgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~ 212 (216)
T PF00091_consen 133 LGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENP 212 (216)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSH
T ss_pred ccceeccccccccchhhhccccccceeeccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCC
Confidence 79999999999999998886 79999999999999999999999999999999999999999999999998899998 7
Q ss_pred HHHH
Q 024548 78 AFNL 81 (266)
Q Consensus 78 af~~ 81 (266)
+|+.
T Consensus 213 ~f~~ 216 (216)
T PF00091_consen 213 AFNE 216 (216)
T ss_dssp HHHH
T ss_pred CcCC
Confidence 8863
No 26
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=99.65 E-value=2.6e-17 Score=150.46 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=151.0
Q ss_pred CCCCCCCch-HHHHHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGG-APVIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGa-apvia~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
.|||||||. ++...+++.+|| .+-+++.|.|-.++..+.+||..+.-+...+++|+.+.+||++++.+|..+..+.
T Consensus 140 ~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~ 219 (407)
T KOG1376|consen 140 FGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIE 219 (407)
T ss_pred ccCCCcCCccchhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccC
Confidence 589999999 778999999998 5779999999999999999999999999999999999999999999998888888
Q ss_pred -HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCc-------cC
Q 024548 77 -EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLL-------DI 148 (266)
Q Consensus 77 -~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl-------~~ 148 (266)
+.|..+|++++|.+++||..+|+.|-.|+|+..+.|+|+++.+ ..-++.+ ...--++-....+.+..+ .+
T Consensus 220 rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpypl-yap~~s~-~~a~he~~sv~~it~~~fe~~~qmvkc 297 (407)
T KOG1376|consen 220 RPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYPL-YAPVISA-EKAYHEQLSVAEITNACFEPANQMVKC 297 (407)
T ss_pred CccccchhhhHHhhhcccccccccCCcccccHHHHHhhCCCCcc-cccchhh-cccchhhhhHHhhcccccccccccccc
Confidence 5999999999999999999999999999999999999999984 1111111 111112223344555554 36
Q ss_pred CcccccceEEeecCCCCCCHHHHHHHHHHHHhhc
Q 024548 149 GIERATGIVWNITGGSDLTLFEVNAAAEVIYDLV 182 (266)
Q Consensus 149 ~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~ 182 (266)
|+.-+|++++..+...|+-++|++.+...|+.+-
T Consensus 298 DP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~r 331 (407)
T KOG1376|consen 298 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 331 (407)
T ss_pred CCccchHHHHHHhccCCcCcccchHHHHhhhhcc
Confidence 8888999999998888999999999999887654
No 27
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.65 E-value=3e-15 Score=117.65 Aligned_cols=113 Identities=50% Similarity=0.732 Sum_probs=102.3
Q ss_pred eeechHHHHHhhhccCceeEEEeeecCcchHHHHHHHHhhCCCccC-CcccccceEEeecCCCCCCHHHHHHHHHHHHhh
Q 024548 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDI-GIERATGIVWNITGGSDLTLFEVNAAAEVIYDL 181 (266)
Q Consensus 103 iNvDfaDv~tvL~~~g~a~~g~G~a~g~~r~~~A~~~Al~spLl~~-~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~ 181 (266)
+|+||+|++++|+++|..++|+|.+.+++|..+|.+.++.+||++. ++..|++++++++++.++++.|+.++++.++++
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~~~~~l~~~~~~~~~ev~~~~~~i~~~ 80 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGPDLTLKEVNEAMERIREK 80 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCceEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999888899888887899999999999999986 588899988899988899999999999999999
Q ss_pred cCCCCcEEEEEEeCCCC-CCeEEEEEEeecCCCCc
Q 024548 182 VDPTANLIFGAVIDPSL-SGQVSITLIATGFKRQE 215 (266)
Q Consensus 182 ~~~~a~Ii~G~~~d~~~-~~~v~VtvIatg~~~~~ 215 (266)
..+...+.||...++.+ ...+++++|+||+....
T Consensus 81 ~~~~~~v~w~~~~~~~~~~~~~~i~ni~t~i~~~~ 115 (120)
T smart00865 81 ADPDAFIIWGPVIDEELGGDEIRVTVIATGIGSAF 115 (120)
T ss_pred cCCCceEEEccccCCcCCCCcEEEEEEecccCccc
Confidence 87678899999888888 78999999999998654
No 28
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.63 E-value=8.3e-17 Score=147.30 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=151.7
Q ss_pred CCCCCCCchH-HHHHHHHHHcC---CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHH
Q 024548 1 MGGGTGTGGA-PVIAGVAKSMG---ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVT 76 (266)
Q Consensus 1 lGGGTGSGaa-pvia~iake~g---~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~ 76 (266)
||||||+|.. ..+.++..+|. ..+++|+++|. +.+++++|||.+++++|.+++|.+++|||++|+++|.....+.
T Consensus 84 ~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~ 162 (369)
T KOG1375|consen 84 LGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLK 162 (369)
T ss_pred ccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhccc
Confidence 7999999995 56888888876 57899999998 8899999999999999999999999999999999996544333
Q ss_pred HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhcc-CceeEEEeeecCcchHHHHHHHHhhCCCccCCcccccc
Q 024548 77 EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANA-GSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATG 155 (266)
Q Consensus 77 ~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~-g~a~~g~G~a~g~~r~~~A~~~Al~spLl~~~i~~Ak~ 155 (266)
. -.++|...|+||..|.|+..+..+|.+. ++||+-.|+++-..+..... .|+.-|-|...+..|+.
T Consensus 163 ~------------~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~-~a~tv~eltqq~fdakn 229 (369)
T KOG1375|consen 163 T------------PSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQQMFDAKN 229 (369)
T ss_pred C------------CCCceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc-ccccccccccccccCcc
Confidence 1 1288999999999999999999999997 79999999998543332222 44554544444555555
Q ss_pred eEEee-------c-CCCCCCHHHHHHHHHHHHhhcCC------CCcEEEEEEeCCCCCCeEEEEEEee
Q 024548 156 IVWNI-------T-GGSDLTLFEVNAAAEVIYDLVDP------TANLIFGAVIDPSLSGQVSITLIAT 209 (266)
Q Consensus 156 ilv~i-------~-~g~di~l~ei~~~~~~i~~~~~~------~a~Ii~G~~~d~~~~~~v~VtvIat 209 (266)
++... + +| +++|+++.+..++.+.+. +.+|+..+|..|+.+-++..|.++-
T Consensus 230 mm~a~dyLt~a~~~rG---smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~tf~~n 294 (369)
T KOG1375|consen 230 MMTACDYLTVAAMFRG---SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSSTFIGN 294 (369)
T ss_pred hhhhhhhhhhHHHhcc---chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccccccccccc
Confidence 44321 2 44 999999999999988763 6789999999998888888887754
No 29
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=97.58 E-value=0.00028 Score=68.99 Aligned_cols=124 Identities=11% Similarity=0.154 Sum_probs=85.6
Q ss_pred CCCCCCCchHH-HHHHHHHHcC---CcEEEEEecCCcc----hhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhh-h--
Q 024548 1 MGGGTGTGGAP-VIAGVAKSMG---ILTVGIVTTPFSF----EGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTA-V-- 69 (266)
Q Consensus 1 lGGGTGSGaap-via~iake~g---~ltv~Vvt~Pf~~----Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~-~-- 69 (266)
++||| +|.+. ++.++..||+ +.++++.+.|... +..+++||+.+++..|.+++|.++.+.-...... .
T Consensus 160 l~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~ 238 (493)
T cd06060 160 LHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGP 238 (493)
T ss_pred cCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCC
Confidence 68999 89855 6888899998 4556666655422 5678999999999999999999999986533210 0
Q ss_pred ---cCCCCHH--HHHHHHHHHHHhhhhhcccceecCceeeechHHHHHhhhccCceeEEEeee
Q 024548 70 ---SQSTPVT--EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTA 127 (266)
Q Consensus 70 ---~~~~~l~--~af~~~n~vl~~~I~gIt~~i~~~G~iNvDfaDv~tvL~~~g~a~~g~G~a 127 (266)
.+.+.+. .-| ..-.+++-++.++|-..|..+.- .++.++...|...|..++..+.+
T Consensus 239 p~~~~~l~~d~~~~~-htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gRki~~~~~a 299 (493)
T cd06060 239 PRTFPYLNYDAELPY-HTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGRKVVAAGLA 299 (493)
T ss_pred CCCCcccccCCCCch-HHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccchhhhhccC
Confidence 1112222 123 23367888999988777765433 57899999999877555544443
No 30
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=95.76 E-value=0.08 Score=42.28 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=63.6
Q ss_pred CceeEEEeeecCcc---------hHHHHHHHHhh--CCCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcC---
Q 024548 118 GSSLMGIGTATGKT---------RARDAALNAIQ--SPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD--- 183 (266)
Q Consensus 118 g~a~~g~G~a~g~~---------r~~~A~~~Al~--spLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~--- 183 (266)
++||+..+++|... ...+-+++.+. +.++.++....+++.+.+..+++++.+|+++++..++++..
T Consensus 2 rlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~F 81 (126)
T PF03953_consen 2 RLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQF 81 (126)
T ss_dssp TT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTSB
T ss_pred CeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccce
Confidence 57999999997322 23454555553 34567788888888877665449999999999999998754
Q ss_pred ---CCCcEEEEEEeCCCCC---CeEEEEEEee
Q 024548 184 ---PTANLIFGAVIDPSLS---GQVSITLIAT 209 (266)
Q Consensus 184 ---~~a~Ii~G~~~d~~~~---~~v~VtvIat 209 (266)
.+..++.|++..|... ..+++++|+-
T Consensus 82 v~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsN 113 (126)
T PF03953_consen 82 VDWIPTGFKVGICKVPPYGQPNSDRSGLMLSN 113 (126)
T ss_dssp -SSSTTCEEEEEESS-STSTTTSSEEEEEEEE
T ss_pred eeecCchhhcccccCCCcccCCCcceEEEeCC
Confidence 3678999999887754 3456777763
No 31
>PF13809 Tubulin_2: Tubulin like
Probab=95.45 E-value=0.028 Score=52.62 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=37.3
Q ss_pred CCCCCCCchHHHHHHHHHH-c------CCcEEEEEecCCcchh-----hHhHHHHHHHHHHHHh
Q 024548 1 MGGGTGTGGAPVIAGVAKS-M------GILTVGIVTTPFSFEG-----RRRAVQAQEGIASLRD 52 (266)
Q Consensus 1 lGGGTGSGaapvia~iake-~------g~ltv~Vvt~Pf~~Eg-----~~r~~nA~~gl~~L~~ 52 (266)
|+||||||+..=++.+.+. + ...+.+++.+|-.|++ .....||-.+|.+|.-
T Consensus 156 laGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 156 LAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred cCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 7999999986544544443 2 3678888888875544 4567799999999863
No 32
>TIGR03483 FtsZ_alphas_C cell division protein FtsZ, alphaProteobacterial C-terminal extension. This model describes a domain found as a C-terminal extension to the cell division protein FtsZ in many but not all members of the alphaProteobacteria.
Probab=88.70 E-value=0.18 Score=40.41 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.3
Q ss_pred CCCCccccchhhhhcC
Q 024548 244 SEGGSVEIPEFLKKKG 259 (266)
Q Consensus 244 ~~~~~~~~p~~~~~~~ 259 (266)
.++|.+|||+||||+.
T Consensus 105 ~edd~leIPAFLRRQa 120 (121)
T TIGR03483 105 QEDDQLEIPAFLRRQA 120 (121)
T ss_pred CccccchhhHHHHhcc
Confidence 3467899999999985
No 33
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=82.75 E-value=7.6 Score=30.29 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHH
Q 024548 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84 (266)
Q Consensus 6 GSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~ 84 (266)
|+|- +-=+.+.+|++|+.|++|.+-|...-. -...+|.++.++...--+ ..++++...+.
T Consensus 9 nrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~-------------~~~~ad~~~~~~~~~~~~---~yl~~e~I~~i--- 69 (110)
T PF00289_consen 9 NRGEIAVRIIRALRELGIETVAVNSNPDTVST-------------HVDMADEAYFEPPGPSPE---SYLNIEAIIDI--- 69 (110)
T ss_dssp S-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH-------------HHHHSSEEEEEESSSGGG---TTTSHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHhCCcceeccCchhcccc-------------cccccccceecCcchhhh---hhccHHHHhhH---
Confidence 4454 333778899999999999999875321 246899999999444322 22333333322
Q ss_pred HHHhhhhhcccceecCce----eeechHHHHHhhhccCceeEEEe
Q 024548 85 ILRQGVRGISDIITIPGL----VNVDFADVRAIMANAGSSLMGIG 125 (266)
Q Consensus 85 vl~~~I~gIt~~i~~~G~----iNvDfaDv~tvL~~~g~a~~g~G 125 (266)
+.+. .....+||+ .|.+|++... ..|+.|+|+.
T Consensus 70 ----a~~~-g~~~i~pGyg~lse~~~fa~~~~---~~gi~fiGp~ 106 (110)
T PF00289_consen 70 ----ARKE-GADAIHPGYGFLSENAEFAEACE---DAGIIFIGPS 106 (110)
T ss_dssp ----HHHT-TESEEESTSSTTTTHHHHHHHHH---HTT-EESSS-
T ss_pred ----hhhh-cCcccccccchhHHHHHHHHHHH---HCCCEEECcC
Confidence 2222 223346775 4555555444 7789998875
No 34
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=76.09 E-value=3.9 Score=38.49 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=43.3
Q ss_pred CCCCCCCchHHHHHHHHHHcC------------------CcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMG------------------ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g------------------~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivi 60 (266)
.+||||||-+-.+..++-... ..++-..|.|-..||..+.-...+--..|+.-=|.+||-
T Consensus 178 isGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVG 255 (355)
T COG4962 178 ISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVG 255 (355)
T ss_pred EeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEE
Confidence 379999999877766554311 567889999999898776655666666666666777764
No 35
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.14 E-value=31 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCCCCchHHHHHHHHHHcCCcEEEEEecCCcch-hhHhHHHHHHHHHHHHhcC-CEEEEEeChhhh
Q 024548 3 GGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFE-GRRRAVQAQEGIASLRDNV-DTLIVIPNDKLL 66 (266)
Q Consensus 3 GGTGSGaapvia~iake~g~ltv~Vvt~Pf~~E-g~~r~~nA~~gl~~L~~~~-D~~ividNd~L~ 66 (266)
|-.|||=+-++..+|+.++...+.+-......+ ...........+++.++.. .++++|||=..+
T Consensus 5 G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp SSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 778999999999999999987766655544311 1223445556666766676 899999995444
No 36
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=64.71 E-value=21 Score=35.45 Aligned_cols=175 Identities=20% Similarity=0.289 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHHHHHhh
Q 024548 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQG 89 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~vl~~~ 89 (266)
|.=|.+.||++||.||+|+..|-...=. .+.+|--+++ ...+-.+.|-.+|.+|..+
T Consensus 10 AcRVirTakkmGI~tVAV~Sd~D~~SlH-------------Vk~ADeav~i----------g~a~~~~SYL~~~~I~~aa 66 (670)
T KOG0238|consen 10 ACRVIRTAKKMGIRTVAVYSDADRNSLH-------------VKMADEAVCI----------GPAPAAQSYLRMDKIIDAA 66 (670)
T ss_pred eehhhhHHHHhCCeEEEEEccCccccce-------------eecccceeec----------CCCchhhhhhhHHHHHHHH
Confidence 4447788999999999999887643211 2334444443 2244556787888888666
Q ss_pred hhhcccceecCce----eeechHHHHHhhhccCceeEEEeeec----CcchHHHHHHHHhhCCCcc------CCcccccc
Q 024548 90 VRGISDIITIPGL----VNVDFADVRAIMANAGSSLMGIGTAT----GKTRARDAALNAIQSPLLD------IGIERATG 155 (266)
Q Consensus 90 I~gIt~~i~~~G~----iNvDfaDv~tvL~~~g~a~~g~G~a~----g~~r~~~A~~~Al~spLl~------~~i~~Ak~ 155 (266)
.+.=... -.||+ =|.+|+++++ ..|+.|||.-... |.....+.+.++-.-|+.. .+.+.+++
T Consensus 67 ~~tgaqa-ihPGYGFLSEn~~Fae~c~---~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~ 142 (670)
T KOG0238|consen 67 KRTGAQA-IHPGYGFLSENAEFAELCE---DAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKK 142 (670)
T ss_pred HhcCCce-ecCCccccccchHHHHHHH---HcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHH
Confidence 5543333 36775 4888888765 6799999876432 2211222233333455542 22333332
Q ss_pred --------eEEeec-CCCC------CCHHHHHHHHHHHHhhcCC---CCcEEEEEEeCCCCCCeEEEEEEeecCCC
Q 024548 156 --------IVWNIT-GGSD------LTLFEVNAAAEVIYDLVDP---TANLIFGAVIDPSLSGQVSITLIATGFKR 213 (266)
Q Consensus 156 --------ilv~i~-~g~d------i~l~ei~~~~~~i~~~~~~---~a~Ii~G~~~d~~~~~~v~VtvIatg~~~ 213 (266)
+++--+ ||.- -+..|+.+.....++.... +..+..=-.++. .-.|+|-|++-++.+
T Consensus 143 ~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n--pRHiEvQv~gD~hGn 216 (670)
T KOG0238|consen 143 VAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDN--PRHIEVQVFGDKHGN 216 (670)
T ss_pred HHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccC--CceEEEEEEecCCCc
Confidence 233323 2222 3466777777666554311 112221111221 246888888888754
No 37
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=55.78 E-value=31 Score=28.87 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCCCCchHHHHHHHHHHcCCcEEEEEec-CCcchhhHh
Q 024548 3 GGTGTGGAPVIAGVAKSMGILTVGIVTT-PFSFEGRRR 39 (266)
Q Consensus 3 GGTGSGaapvia~iake~g~ltv~Vvt~-Pf~~Eg~~r 39 (266)
||+|||=+-+-.+++++++...+-+.|. |+..|-..|
T Consensus 8 G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~r 45 (170)
T PRK05800 8 GGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAAR 45 (170)
T ss_pred CCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHH
Confidence 8999999999889999887655556663 665554333
No 38
>PF14881 Tubulin_3: Tubulin domain
Probab=54.10 E-value=40 Score=28.61 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEEecC---Cc-ch------hhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHH
Q 024548 10 APVIAGVAKSMGILTVGIVTTP---FS-FE------GRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~P---f~-~E------g~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af 79 (266)
+-++..+..||+...+ +.+.. -. .. ...|..|...++..|.++++.++.+.... + . ..-|
T Consensus 92 s~~Le~L~DEy~k~~i-~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~--d---~----~s~~ 161 (180)
T PF14881_consen 92 SSLLEHLRDEYPKKPI-IWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS--D---A----SSNW 161 (180)
T ss_pred HHHHHHHHHHcCCCce-EEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC--c---C----CCcH
Confidence 5689999999997665 32221 11 11 12456799999999999999999987311 0 1 1122
Q ss_pred HHHHHHHHhhhhhcccc
Q 024548 80 NLADDILRQGVRGISDI 96 (266)
Q Consensus 80 ~~~n~vl~~~I~gIt~~ 96 (266)
+.-.+++.+|.++|-.
T Consensus 162 -htSai~A~aidT~TLp 177 (180)
T PF14881_consen 162 -HTSAILAAAIDTITLP 177 (180)
T ss_pred -HHHHHHHHHHHhcccc
Confidence 3335677777766644
No 39
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=53.79 E-value=1.8e+02 Score=26.66 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCCCCchHH--HH--HHHHHHcCCcEEEEEecCCcch--hhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCC
Q 024548 3 GGTGTGGAP--VI--AGVAKSMGILTVGIVTTPFSFE--GRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTP 74 (266)
Q Consensus 3 GGTGSGaap--vi--a~iake~g~ltv~Vvt~Pf~~E--g~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~ 74 (266)
|.-||-+++ ++ .+-++++|..++.+++..-... -..+..++..+...++ -|..+++.--=|.+.+.++-.
T Consensus 5 G~h~s~~~~~~~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~vHApYlINl~s~~~e 80 (280)
T COG0648 5 GAHGSPAGGKSLVNAVERAREIGLNAFEIFLVNPRVWISPPLAEDAIELFKAALK--DDVQLSVHAPYLINLASPEKE 80 (280)
T ss_pred eeeecCCCchhHHHHHHHHHHcCCCEEEEEecCcccccCCCchHHHHHHHHHhhc--cCceEEeecceeecCCCCCHH
Confidence 445666655 43 3447789999999998854211 1112222344433333 477788877778887766543
No 40
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=49.38 E-value=21 Score=33.87 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=46.4
Q ss_pred CchHHH-HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHHH
Q 024548 7 TGGAPV-IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDI 85 (266)
Q Consensus 7 SGaapv-ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~v 85 (266)
.|=+|+ ||++||.|++++++|.-+=- +..+.+.--.=++.+.+...-.+++++|+...+.
T Consensus 301 ~GK~pigVA~~Akk~~vPvIaiaGs~~-------------------~~~~~v~~~GI~AvFsi~~~~~~Le~alk~~~~n 361 (378)
T COG1929 301 HGKTPIGVAKLAKKYGVPVIAIAGSLG-------------------EDYEVVHQEGIDAVFSILERIGSLEEALKNAAEN 361 (378)
T ss_pred CCccchHHHHhhhhhCCCEEEEecccc-------------------cCcchhhhcCchhhhhcccCCCCHHHHHHhHHHH
Confidence 456788 99999999999999976511 1111111111244556666677888899988877
Q ss_pred HHhhhhhcccce
Q 024548 86 LRQGVRGISDII 97 (266)
Q Consensus 86 l~~~I~gIt~~i 97 (266)
+...-..|...+
T Consensus 362 l~~~a~nia~~~ 373 (378)
T COG1929 362 LERTARNIAALL 373 (378)
T ss_pred HHHHHHHHHHHH
Confidence 766665554443
No 41
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=47.92 E-value=18 Score=32.58 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=28.0
Q ss_pred CCCCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhc
Q 024548 4 GTGTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDN 53 (266)
Q Consensus 4 GTGSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~ 53 (266)
|||||+ +.++++.-...|. |++ +| .|..+|..+.+.|++.
T Consensus 102 GtGSG~lt~~La~~vg~~G~----v~t----yE--~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 102 GTGSGALTAYLARAVGPEGH----VTT----YE--IREDFAKTARENLSEF 142 (256)
T ss_pred ccCchHHHHHHHHhhCCCce----EEE----EE--ecHHHHHHHHHHHHHh
Confidence 899998 7778876655564 222 33 4677888888888875
No 42
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=47.86 E-value=88 Score=26.58 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred CCCchHH---HHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeC-hhhhhhhcCCCCHHHHHH
Q 024548 5 TGTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN-DKLLTAVSQSTPVTEAFN 80 (266)
Q Consensus 5 TGSGaap---via~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividN-d~L~~~~~~~~~l~~af~ 80 (266)
+.||-++ -+++.||+.|+.+|++...+.+ .|.+.+|.+|.++. +... .+.+...
T Consensus 119 S~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s---------------~l~~~ad~~l~~~~~~~~~-------~~~~~~~ 176 (192)
T PRK00414 119 STSGNSGNIIKAIEAARAKGMKVITLTGKDGG---------------KMAGLADIEIRVPHFGYAD-------RIQEIHI 176 (192)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEeCCCCCcH-------HHHHHHH
Confidence 3456544 2678899999999999766542 25678999999998 4433 2345555
Q ss_pred HHHHHHHhhh
Q 024548 81 LADDILRQGV 90 (266)
Q Consensus 81 ~~n~vl~~~I 90 (266)
.+-++|.+.|
T Consensus 177 ~~~~~l~~~v 186 (192)
T PRK00414 177 KVIHILIQLI 186 (192)
T ss_pred HHHHHHHHHH
Confidence 5556665554
No 43
>PRK13937 phosphoheptose isomerase; Provisional
Probab=47.52 E-value=1e+02 Score=25.95 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=44.0
Q ss_pred CCCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHH
Q 024548 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNL 81 (266)
Q Consensus 5 TGSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~ 81 (266)
+.||-++- +++.||+.|+.+|++...|.+ .|.+.+|.++.++.+.-. -+++.-..
T Consensus 114 S~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s---------------~L~~~ad~~l~~~~~e~~-------~~~~~~~~ 171 (188)
T PRK13937 114 STSGNSPNVLAALEKARELGMKTIGLTGRDGG---------------KMKELCDHLLIVPSDDTP-------RIQEMHIT 171 (188)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEeCCCCcH-------HHHHHHHH
Confidence 34565553 677889999999999776542 256799999999875322 23455556
Q ss_pred HHHHHHhhhhh
Q 024548 82 ADDILRQGVRG 92 (266)
Q Consensus 82 ~n~vl~~~I~g 92 (266)
+.+.|.+.|..
T Consensus 172 ~~~~l~~~~~~ 182 (188)
T PRK13937 172 IGHILCDLVER 182 (188)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 44
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=47.30 E-value=86 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=44.4
Q ss_pred CCCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHH
Q 024548 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNL 81 (266)
Q Consensus 5 TGSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~ 81 (266)
++||-++- +++.||+.|+.+|++...|.+ -|.++...+|.++.+|.+..-. +++.--.
T Consensus 117 S~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s------------~l~~l~~~~D~~i~ip~~~~~~-------v~e~h~~ 177 (196)
T PRK10886 117 STRGNSRDIVKAVEAAVTRDMTIVALTGYDGG------------ELAGLLGPQDVEIRIPSHRSAR-------IQEMHML 177 (196)
T ss_pred eCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC------------hhhhccccCCEEEEcCCCchHH-------HHHHHHH
Confidence 45666553 678899999999999766542 1223333589999999876432 3455555
Q ss_pred HHHHHHhhhh
Q 024548 82 ADDILRQGVR 91 (266)
Q Consensus 82 ~n~vl~~~I~ 91 (266)
+.++|.+.|.
T Consensus 178 i~H~l~~~v~ 187 (196)
T PRK10886 178 TVNCLCDLID 187 (196)
T ss_pred HHHHHHHHHH
Confidence 6666655553
No 45
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=46.34 E-value=86 Score=23.05 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=35.7
Q ss_pred CCCCCCchHHHHHHHHHHcCCc---EEEEEecCCcc---------------hhhHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 2 GGGTGTGGAPVIAGVAKSMGIL---TVGIVTTPFSF---------------EGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~l---tv~Vvt~Pf~~---------------Eg~~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
-|.+|||=+-++..+|+.+... ++.+-+..... ........+...++........+|++|+=
T Consensus 8 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 8 VGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred ECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4889999999999999887654 44443332211 11122334444444444444477888773
No 46
>PRK13660 hypothetical protein; Provisional
Probab=44.89 E-value=63 Score=27.64 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=47.7
Q ss_pred CCCCCCch--HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHH
Q 024548 2 GGGTGTGG--APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAF 79 (266)
Q Consensus 2 GGGTGSGa--apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af 79 (266)
||--|.-. |=++-++.++|+-+.+++ ..||.--+.+=...-..-++.|++.||.++++... -++ -...|
T Consensus 49 ggalG~d~wAaEvvl~LK~~yp~lkL~~-~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~-~y~-------~p~q~ 119 (182)
T PRK13660 49 SGQLGVELWAAEVVLELKEEYPDLKLAV-ITPFEEHGENWNEANQEKLANILKQADFVKSISKR-PYE-------SPAQF 119 (182)
T ss_pred CCcchHHHHHHHHHHHHHhhCCCeEEEE-EeCccchhhcCCHHHHHHHHHHHHhCCEEEEecCC-CCC-------ChHHH
Confidence 44445543 557788888887555554 35775433333444566778899999999999654 111 02346
Q ss_pred HHHHHHHHh
Q 024548 80 NLADDILRQ 88 (266)
Q Consensus 80 ~~~n~vl~~ 88 (266)
+.=|+.+.+
T Consensus 120 ~~rn~fmv~ 128 (182)
T PRK13660 120 RQYNQFMLE 128 (182)
T ss_pred HHHHHHHHH
Confidence 666666544
No 47
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=42.44 E-value=33 Score=30.32 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCcEEEEEecCC--cchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHHHHH
Q 024548 10 APVIAGVAKSMGILTVGIVTTPF--SFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILR 87 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~Pf--~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~vl~ 87 (266)
++-|.+.|+.||+.++ +-.|. ..+-......|..+++.+....|+++++.-.+=+. ....+.+||...++--.
T Consensus 53 s~~Il~~A~~ygak~~--~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl---~~~~ik~A~e~f~~~~~ 127 (228)
T COG1083 53 SEEILEEAKKYGAKVF--LKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLL---TSLHIKEAFEKFLNNQY 127 (228)
T ss_pred cHHHHHHHHHhCcccc--ccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCcccc---chhHHHHHHHHHhcCCC
Confidence 4568889999998887 44443 34333334578888898899999888776655332 24578889887655433
Q ss_pred hhhhhccc
Q 024548 88 QGVRGISD 95 (266)
Q Consensus 88 ~~I~gIt~ 95 (266)
..+-+.++
T Consensus 128 ~sl~sa~e 135 (228)
T COG1083 128 DSLFSAVE 135 (228)
T ss_pred cceEEEee
Confidence 33333333
No 48
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=42.13 E-value=29 Score=29.49 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHHHHHhh
Q 024548 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQG 89 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~vl~~~ 89 (266)
|-++-++.++|+-+.+++ ..||..-+..=......-+..|.+.+|.++++..+.... ...|..-|+.+...
T Consensus 59 ae~vl~LK~~yp~ikL~~-v~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~--------~~~~~~rn~fMvdh 129 (177)
T PF06908_consen 59 AEVVLELKKEYPEIKLAL-VLPFENQGNNWNEANQERYQSILEQADFVVVVSERPYYS--------PGQLQKRNRFMVDH 129 (177)
T ss_dssp HHHHHTTTTT-TT-EEEE-EESSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhheEEEE-EEcccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCC--------HHHHHHHhHHHHhC
Confidence 445666667787444433 457754444445567778899999999999998864432 23577777766554
Q ss_pred h
Q 024548 90 V 90 (266)
Q Consensus 90 I 90 (266)
-
T Consensus 130 s 130 (177)
T PF06908_consen 130 S 130 (177)
T ss_dssp S
T ss_pred C
Confidence 3
No 49
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=41.18 E-value=31 Score=30.34 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=34.7
Q ss_pred hHHH-HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 024548 9 GAPV-IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (266)
Q Consensus 9 aapv-ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L 65 (266)
..|+ +|+.+||.|+.+|+|-..-++..-.-|.. +=+.|.+.+| +|+||++.
T Consensus 118 pvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~----SGK~Ly~~aD--vVlDN~av 169 (243)
T COG4821 118 PVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHK----SGKLLYEFAD--VVLDNGAV 169 (243)
T ss_pred CcchHHHHHHHhcCCeEEEEehhhhhhhchhccc----chhHHhhhcc--eeeeCCCc
Confidence 4677 99999999999999977766532222221 2245778888 46788754
No 50
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=40.50 E-value=23 Score=32.70 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.0
Q ss_pred CCCCCCCchHHHHHHHHHHcCCc
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGIL 23 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~l 23 (266)
++|.+|||=+++..++|+.+|..
T Consensus 97 I~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999876
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=40.35 E-value=1.3e+02 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCCCCchHHHHHHHHHHc---CCcEEEEEec
Q 024548 3 GGTGTGGAPVIAGVAKSM---GILTVGIVTT 30 (266)
Q Consensus 3 GGTGSGaapvia~iake~---g~ltv~Vvt~ 30 (266)
|.+|+|=+-++..+++.+ +...+.+-..
T Consensus 26 G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 26 GPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 889999999999998886 5554444333
No 52
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=39.43 E-value=99 Score=21.01 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCeEEEEEE
Q 024548 169 FEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLI 207 (266)
Q Consensus 169 ~ei~~~~~~i~~~~~~~a~Ii~G~~~d~~~~~~v~VtvI 207 (266)
.|+-.+++.+.... .+-+++||...|+. ++++.+||.
T Consensus 14 ~dlYKvVDfLNktL-K~~~lmFGLs~d~~-~~k~vitIY 50 (52)
T PF14084_consen 14 DDLYKVVDFLNKTL-KDKNLMFGLSKDEK-EEKMVITIY 50 (52)
T ss_pred ccHHHHHHHHhhhh-hhccEEEEEeecCc-CCEEEEEEE
Confidence 35566777776655 35799999999876 788888875
No 53
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=39.31 E-value=1.2e+02 Score=25.20 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=27.1
Q ss_pred CCCCCCchHHHHHHHHHHcCCcEEEEEec-CCcchhhHh
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILTVGIVTT-PFSFEGRRR 39 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~ltv~Vvt~-Pf~~Eg~~r 39 (266)
-||+|||=+-...+++.+.+...+=+.|. |+..|-..|
T Consensus 5 ~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~r 43 (169)
T cd00544 5 TGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAER 43 (169)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHH
Confidence 38999999999888888877666555555 555554433
No 54
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=38.90 E-value=18 Score=26.95 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=8.9
Q ss_pred CCCCchHHHHHH
Q 024548 4 GTGTGGAPVIAG 15 (266)
Q Consensus 4 GTGSGaapvia~ 15 (266)
++|||++|+++-
T Consensus 3 agGtGIaP~~s~ 14 (109)
T PF00175_consen 3 AGGTGIAPFLSM 14 (109)
T ss_dssp EEGGGGHHHHHH
T ss_pred ecceeHHHHHHH
Confidence 468999998553
No 55
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=37.34 E-value=29 Score=31.61 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=21.9
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILT 24 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~lt 24 (266)
+||-+|.|-+.+-.++|+++||..
T Consensus 94 IGGasGVGkStIA~ElA~rLgI~~ 117 (299)
T COG2074 94 IGGASGVGKSTIAGELARRLGIRS 117 (299)
T ss_pred ecCCCCCChhHHHHHHHHHcCCce
Confidence 599999999999999999999754
No 56
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=36.65 E-value=30 Score=26.95 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGI 27 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~V 27 (266)
+.|-+|||-+.+..++|+++|+..+..
T Consensus 4 i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecc
Confidence 468899999999999999998776554
No 57
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=33.81 E-value=29 Score=20.11 Aligned_cols=12 Identities=50% Similarity=0.864 Sum_probs=9.3
Q ss_pred CCCCCCchHHHH
Q 024548 2 GGGTGTGGAPVI 13 (266)
Q Consensus 2 GGGTGSGaapvi 13 (266)
|||-|+|.+.++
T Consensus 1 ~gg~g~gf~liv 12 (26)
T TIGR01732 1 GGGYGGGFALIV 12 (26)
T ss_pred CCccCcchHHHH
Confidence 688899987653
No 58
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=33.75 E-value=32 Score=27.53 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCCCCchHHHHHHHHHHcCCcEEEE
Q 024548 3 GGTGTGGAPVIAGVAKSMGILTVGI 27 (266)
Q Consensus 3 GGTGSGaapvia~iake~g~ltv~V 27 (266)
|+.|||=+-+..++|++||..-+++
T Consensus 3 G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 3 GPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp ESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CCCCCChHHHHHHHHHhcCcceech
Confidence 8999999999999999999866663
No 59
>PRK04182 cytidylate kinase; Provisional
Probab=33.71 E-value=37 Score=27.51 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVG 26 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~ 26 (266)
+.|..|||-+.+...+|+.+|...+.
T Consensus 5 i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 5 ISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEec
Confidence 46999999999999999999865443
No 60
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=33.28 E-value=43 Score=30.00 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCCCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhc
Q 024548 3 GGTGTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDN 53 (266)
Q Consensus 3 GGTGSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~ 53 (266)
-|||||+ +-.+++.....|. |++..|+ ...+..+.++++++
T Consensus 47 aGtGSG~lt~~l~r~v~p~G~----v~t~E~~------~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 47 AGTGSGSLTHALARAVGPTGH----VYTYEFR------EDRAEKARKNFERH 88 (247)
T ss_dssp E--TTSHHHHHHHHHHTTTSE----EEEEESS------HHHHHHHHHHHHHT
T ss_pred ecCCcHHHHHHHHHHhCCCeE----EEccccC------HHHHHHHHHHHHHc
Confidence 3899998 6678887655554 5454443 33344444555544
No 61
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.29 E-value=2.2e+02 Score=27.77 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHhhhhhcccceecCcee-------eechHHHHHhhhc-cCceeEEEeeecC---cchHHHHHHHH
Q 024548 72 STPVTEAFNLADDILRQGVRGISDIITIPGLV-------NVDFADVRAIMAN-AGSSLMGIGTATG---KTRARDAALNA 140 (266)
Q Consensus 72 ~~~l~~af~~~n~vl~~~I~gIt~~i~~~G~i-------NvDfaDv~tvL~~-~g~a~~g~G~a~g---~~r~~~A~~~A 140 (266)
+.++.+..+.+-.++.++++.|+-+=...+-. ..+|+++..-+.. .|...+-++...- .+...+|..+.
T Consensus 172 Sr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~ 251 (437)
T COG0621 172 SRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAET 251 (437)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcC
Confidence 34677889999999999999876543332222 3557787666665 4788888877642 23333333321
Q ss_pred -hhCCCccCCcccccceEEeecCCCCCCHHHHHHHHHHHHhhcCC---CCcEEEEE
Q 024548 141 -IQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDP---TANLIFGA 192 (266)
Q Consensus 141 -l~spLl~~~i~~Ak~ilv~i~~g~di~l~ei~~~~~~i~~~~~~---~a~Ii~G~ 192 (266)
--.|+|+..+..+..-++-.+.+ .-+..++.++++.+++...+ .++||+|+
T Consensus 252 ~kv~~~lHlPvQsGsd~ILk~M~R-~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGF 306 (437)
T COG0621 252 PKVCPHLHLPVQSGSDRILKRMKR-GYTVEEYLEIIEKLRAARPDIAISTDIIVGF 306 (437)
T ss_pred CcccccccCccccCCHHHHHHhCC-CcCHHHHHHHHHHHHHhCCCceEeccEEEEC
Confidence 22456666777666655555554 57899999999999988754 35566664
No 62
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.18 E-value=91 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCchHH---HHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 6 GTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 6 GSGaap---via~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
.||-++ -+++.||+.|+.++++...|.+ .|.+.+|.++.++..
T Consensus 88 ~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s---------------~l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKDKGMKTITLAGKDGG---------------KMAGLADIELRVPHF 133 (154)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEEeCCC
Confidence 455533 2778899999999999665542 256789999988875
No 63
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=37 Score=29.75 Aligned_cols=52 Identities=29% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCCCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhh
Q 024548 4 GTGTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLT 67 (266)
Q Consensus 4 GTGSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~ 67 (266)
|||||- +-|+|+++. .+++|=-.+- =...|..-|+.|- +-+ +.++..|-...
T Consensus 80 GtGsGY~aAvla~l~~----~V~siEr~~~------L~~~A~~~L~~lg-~~n-V~v~~gDG~~G 132 (209)
T COG2518 80 GTGSGYQAAVLARLVG----RVVSIERIEE------LAEQARRNLETLG-YEN-VTVRHGDGSKG 132 (209)
T ss_pred CCCchHHHHHHHHHhC----eEEEEEEcHH------HHHHHHHHHHHcC-CCc-eEEEECCcccC
Confidence 899997 889999987 3444421111 1223444444443 222 67777765543
No 64
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=30.73 E-value=2.3e+02 Score=27.73 Aligned_cols=92 Identities=24% Similarity=0.292 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHHHHHHHHh
Q 024548 9 GAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQ 88 (266)
Q Consensus 9 aapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~~n~vl~~ 88 (266)
.+.-+.+.++++|+-|++|...|-..- .....+|-.++++- .+-.+.|..+++++..
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~d~~~-------------~~~~~adeav~i~~----------~~~~~syl~i~~ii~~ 69 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEADADA-------------LHVALADEAVCIGP----------APSADSYLNIDAIIAA 69 (449)
T ss_pred hHHHHHHHHHHhCCeEEEEeccccccc-------------hhhhhCceEEEcCC----------ccchhhhhhHHHHHHH
Confidence 466688999999999999998876432 23457888888873 1233567778888877
Q ss_pred hhhhcccceecCce----eeechHHHHHhhhccCceeEEEeee
Q 024548 89 GVRGISDIITIPGL----VNVDFADVRAIMANAGSSLMGIGTA 127 (266)
Q Consensus 89 ~I~gIt~~i~~~G~----iNvDfaDv~tvL~~~g~a~~g~G~a 127 (266)
+...-.+.+ +||+ -|-+|+.. +...|+.|+|..-.
T Consensus 70 a~~~gadai-~pGygflsen~~fae~---~~~~gl~fiGP~~~ 108 (449)
T COG0439 70 AEETGADAI-HPGYGFLSENAAFAEA---CAEAGLTFIGPSAE 108 (449)
T ss_pred HHhcCCceE-cccchhhhCCHHHHHH---HHHcCCeeeCcCHH
Confidence 777655554 4553 35555554 44567888888754
No 65
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=29.96 E-value=1.4e+02 Score=21.62 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHH
Q 024548 14 AGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTE 77 (266)
Q Consensus 14 a~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~ 77 (266)
.++.+++.. +.|+..+..++...+.......+.+-....|-++.+|.|.++-.-....+|.+
T Consensus 34 ~~~l~~~~~--v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~~~~~l~~ 95 (97)
T PF13704_consen 34 REILRALPG--VGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPPPGRRSLRD 95 (97)
T ss_pred HHHHHhCCC--cEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecCCCCCCHHH
Confidence 344455543 44555544433222222222233333346799999999999864322245543
No 66
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.84 E-value=1e+02 Score=25.35 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 6 GTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 6 GSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
-||-++- +++.||+.|+.+|+|...+.+ .|.+.+|.++.++..
T Consensus 110 ~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s---------------~La~~aD~~l~~~~~ 155 (177)
T cd05006 110 TSGNSPNVLKALEAAKERGMKTIALTGRDGG---------------KLLELADIEIHVPSD 155 (177)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEEeCCC
Confidence 3555443 667889999999999766542 166789999998865
No 67
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=28.55 E-value=51 Score=26.50 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.8
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTV 25 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv 25 (266)
+.|..|||-+-+...+++.+|...+
T Consensus 5 i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 5 ISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcee
Confidence 3689999999999999998886643
No 68
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=28.51 E-value=56 Score=28.79 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=39.1
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhh
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTA 68 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~ 68 (266)
++||+|||=+-+..+++..++...++++..--.+-......-+ ++..-+-|+---+|+|-|.+.
T Consensus 13 IaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~----~~~~~n~d~p~A~D~dLl~~~ 76 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFE----ERNKINYDHPEAFDLDLLIEH 76 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHh----hcCCcCccChhhhcHHHHHHH
Confidence 4799999999999999999986666666653222221111100 122345566667777766553
No 69
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=28.16 E-value=71 Score=29.76 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEE
Q 024548 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (266)
Q Consensus 6 GSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivi 60 (266)
|.|. +.-+++.++-+|..+++.=+.+-.............+|++|...+|.+++.
T Consensus 149 G~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh 204 (324)
T COG0111 149 GLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLH 204 (324)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEc
Confidence 6675 778999999999998887552222111222234456799999999998864
No 70
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.14 E-value=28 Score=29.04 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=32.5
Q ss_pred CCch-HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEE
Q 024548 6 GTGG-APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (266)
Q Consensus 6 GSGa-apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivi 60 (266)
|.|. +--+|+.++-+|..++++=+.+-..++.....-....+++|.+.+|.+++-
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLH 98 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-
T ss_pred EEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhh
Confidence 6665 677999999999988777666543221111000123677777788877764
No 71
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=27.98 E-value=54 Score=19.54 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=8.1
Q ss_pred CCCCCchHHHHHH
Q 024548 3 GGTGTGGAPVIAG 15 (266)
Q Consensus 3 GGTGSGaapvia~ 15 (266)
-|.|||...++.+
T Consensus 13 SGSGSGlplLvQR 25 (29)
T PF08515_consen 13 SGSGSGLPLLVQR 25 (29)
T ss_dssp CTSSSSS-HHHHH
T ss_pred CCCCCCchhhhhh
Confidence 4677777666665
No 72
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=27.03 E-value=44 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.4
Q ss_pred CCCCCCchHHHHHHHHHHcCCcE
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILT 24 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~lt 24 (266)
++..|||...+..++|+.+|+..
T Consensus 5 sr~~Gsgg~~Ia~~LA~~Lg~~~ 27 (179)
T PF13189_consen 5 SRQYGSGGREIAERLAEKLGYPY 27 (179)
T ss_dssp EE-TTSSHHHHHHHHHHHCT--E
T ss_pred CCCCCCChHHHHHHHHHHcCCcc
Confidence 57899999999999999999755
No 73
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=26.86 E-value=1.1e+02 Score=26.56 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCchHHHHHHHHHHcCCcEEEEEec-CCcch-hh------HhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 6 GTGGAPVIAGVAKSMGILTVGIVTT-PFSFE-GR------RRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 6 GSGaapvia~iake~g~ltv~Vvt~-Pf~~E-g~------~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
|+|+==.+++-|.+.|..+++|.|. |+..| .. .....=.+--..+.+.+|.+|++|--
T Consensus 55 ~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG 120 (205)
T COG1611 55 GPGVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGG 120 (205)
T ss_pred chhhhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCC
Confidence 5666555788888999999999884 44433 10 00001111223456778888887754
No 74
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=26.51 E-value=94 Score=30.47 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=37.6
Q ss_pred CCCch-HH-HHHHH-HHHc---------CCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeC
Q 024548 5 TGTGG-AP-VIAGV-AKSM---------GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (266)
Q Consensus 5 TGSGa-ap-via~i-ake~---------g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividN 62 (266)
.|||+ +. .++++ .|=| ..+.+.--.-|+.++|.+++-.... ..|++++|.+||+|-
T Consensus 238 NGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd--~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 238 NGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDD--ADLQKNVDFAICLDT 305 (555)
T ss_pred CCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcch--HHHHhcccEEEEhhh
Confidence 58888 44 37776 3333 2444444445899999998876443 347789999999974
No 75
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=26.49 E-value=1.4e+02 Score=26.08 Aligned_cols=46 Identities=30% Similarity=0.448 Sum_probs=36.2
Q ss_pred CCCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 024548 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (266)
Q Consensus 5 TGSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L 65 (266)
.|||=+-- ++..+|+.|+..++|-..|-+. |-+.+|.++++|-..=
T Consensus 94 S~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss---------------Lak~aDvvl~ip~~~e 142 (202)
T COG0794 94 SGSGETKELLNLAPKAKRLGAKLIAITSNPDSS---------------LAKAADVVLVIPVKTE 142 (202)
T ss_pred eCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh---------------HHHhcCeEEEccCccc
Confidence 46676432 6778999999999998888754 5679999999998753
No 76
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.06 E-value=1.9e+02 Score=22.23 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 13 IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 13 ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
+++.||+.|+.+++|...+.+ .|.+.+|.++.++.+
T Consensus 66 ~~~~a~~~g~~vi~iT~~~~s---------------~la~~ad~~l~~~~~ 101 (120)
T cd05710 66 AAKFAKEKGATVIGLTDDEDS---------------PLAKLADYVIVYGFE 101 (120)
T ss_pred HHHHHHHcCCeEEEEECCCCC---------------cHHHhCCEEEEccCC
Confidence 677889999999998776653 266799999999877
No 77
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=25.86 E-value=1.7e+02 Score=20.10 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=35.3
Q ss_pred CCCCCCchHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeC
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividN 62 (266)
.|..|||=+-+...+++.++-..+.++..-.-.||-...+.... ..+.+..|..|.+|-
T Consensus 5 ~G~~gsGKst~~~~l~~~l~~~~~~~i~~~~I~eg~~~~~~~~~--~~~~~~~d~~Iyld~ 63 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEGLYASYKSRD--ARIRDLADLKIYLDA 63 (69)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCEEEEeEEEEecchhhhhhhHH--hhccccccEEEEEEe
Confidence 58899998888777887742122333333334555444333322 456778888887764
No 78
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=25 Score=28.53 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHHcCCcEEEE
Q 024548 7 TGGAPVIAGVAKSMGILTVGI 27 (266)
Q Consensus 7 SGaapvia~iake~g~ltv~V 27 (266)
||++|++++...+.||.||+-
T Consensus 73 ~GIGPk~e~~Ln~~GI~tfaQ 93 (133)
T COG3743 73 SGIGPKLEKVLNELGIFTFAQ 93 (133)
T ss_pred cccCHHHHHHHHHcCCccHHH
Confidence 699999999999999977654
No 79
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=25.39 E-value=54 Score=19.70 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=10.3
Q ss_pred CCCCCCchHHHHHH-HHH
Q 024548 2 GGGTGTGGAPVIAG-VAK 18 (266)
Q Consensus 2 GGGTGSGaapvia~-iak 18 (266)
.-|+|||...++.+ +|+
T Consensus 11 tSGSGSG~p~LvqRTiar 28 (30)
T smart00467 11 TSGSGSGLPLLVQRTVAR 28 (30)
T ss_pred cCCCCCCchhHHHHHHhh
Confidence 35788887545555 344
No 80
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.38 E-value=2.8e+02 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCC-CchHHHHHHHHHHcCCcEEEEEecCC
Q 024548 2 GGGTG-TGGAPVIAGVAKSMGILTVGIVTTPF 32 (266)
Q Consensus 2 GGGTG-SGaapvia~iake~g~ltv~Vvt~Pf 32 (266)
-|||| +|++-.+++...+.|..++.+...|+
T Consensus 11 tGas~~~giG~~la~~l~~~G~~vi~~~r~~~ 42 (256)
T PRK12748 11 TGASRLNGIGAAVCRRLAAKGIDIFFTYWSPY 42 (256)
T ss_pred eCCCCCCCHHHHHHHHHHHcCCcEEEEcCCcc
Confidence 37887 68888877766667876666654444
No 81
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.87 E-value=1.9e+02 Score=27.15 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=48.7
Q ss_pred CCCCCCCchHH-HHHHHHH---H-cC-CcEEEEEecCCcchhhHhHHHHHHHHHHHHhc-CCEE-EEE--eChhhhhhhc
Q 024548 1 MGGGTGTGGAP-VIAGVAK---S-MG-ILTVGIVTTPFSFEGRRRAVQAQEGIASLRDN-VDTL-IVI--PNDKLLTAVS 70 (266)
Q Consensus 1 lGGGTGSGaap-via~iak---e-~g-~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~-~D~~-ivi--dNd~L~~~~~ 70 (266)
+||||-|-+.+ .+.++.+ + +. ...+++-..|.... .+-|+.|++. ++.+ |=+ =+|++++..+
T Consensus 62 ~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt--------~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~ 133 (353)
T PRK05904 62 LGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPELIT--------QSQINLLKKNKVNRISLGVQSMNNNILKQLN 133 (353)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccCcCC--------HHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 59999998743 3554433 2 22 33677888887653 2344555544 3332 222 2566777777
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q 024548 71 QSTPVTEAFNLADDILRQGVR 91 (266)
Q Consensus 71 ~~~~l~~af~~~n~vl~~~I~ 91 (266)
+..+.+++.+.++.+-...+.
T Consensus 134 R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 134 RTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 778888777766665544444
No 82
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.77 E-value=3.8e+02 Score=22.93 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=42.7
Q ss_pred CCCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhhhhhcCCCCHHHHHHH
Q 024548 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNL 81 (266)
Q Consensus 5 TGSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~~~~~~~~~l~~af~~ 81 (266)
+.||-++- +++.||+.|+.+|++...|.+ .|.+.+|.++.++.+.-. .++++--.
T Consensus 121 S~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s---------------~La~~aD~~l~v~~~e~~-------~v~e~h~~ 178 (196)
T PRK13938 121 STSGNSMSVLRAAKTARELGVTVVAMTGESGG---------------QLAEFADFLINVPSRDTG-------RIQESHIV 178 (196)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---------------hhhhhCCEEEEeCCCchh-------hHHHHHHH
Confidence 45665443 677889999999999766542 256789999998876543 23455555
Q ss_pred HHHHHHhhh
Q 024548 82 ADDILRQGV 90 (266)
Q Consensus 82 ~n~vl~~~I 90 (266)
+.+.|.+.|
T Consensus 179 ~~h~l~~~v 187 (196)
T PRK13938 179 FIHAISEHV 187 (196)
T ss_pred HHHHHHHHH
Confidence 555555554
No 83
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.26 E-value=3e+02 Score=25.74 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=53.4
Q ss_pred CCCCCCCchHH-HHHHH----HHHcCC---cEEEEEecCCcchhhHhHHHHHHHHHHHHhc-CCEEEE---EeChhhhhh
Q 024548 1 MGGGTGTGGAP-VIAGV----AKSMGI---LTVGIVTTPFSFEGRRRAVQAQEGIASLRDN-VDTLIV---IPNDKLLTA 68 (266)
Q Consensus 1 lGGGTGSGaap-via~i----ake~g~---ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~-~D~~iv---idNd~L~~~ 68 (266)
+||||-|-+.| -+.++ .+.+++ .-+++-+.|....- +-|+.|++. ++.+-+ =-++++++.
T Consensus 65 ~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~--------e~l~~l~~~G~~rvslGvQS~~~~~L~~ 136 (375)
T PRK05628 65 VGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSP--------EFFAALRAAGFTRVSLGMQSAAPHVLAV 136 (375)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCH--------HHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 58999986532 34443 333443 24677677765432 233444433 222211 125667777
Q ss_pred hcCCCCHHHHHHHHHHHHHhhhhhc-cccee-cCceeeech
Q 024548 69 VSQSTPVTEAFNLADDILRQGVRGI-SDIIT-IPGLVNVDF 107 (266)
Q Consensus 69 ~~~~~~l~~af~~~n~vl~~~I~gI-t~~i~-~~G~iNvDf 107 (266)
.++..+.+++.+.++.+-...+..+ .++|. .||.---||
T Consensus 137 l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~ 177 (375)
T PRK05628 137 LDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDW 177 (375)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHH
Confidence 8888888888777766554455533 33332 365533344
No 84
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.03 E-value=1.6e+02 Score=22.35 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeCh
Q 024548 13 IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPND 63 (266)
Q Consensus 13 ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd 63 (266)
.++.||+.|+.+++|-..|.+ .|.+.+|.++.++..
T Consensus 65 ~~~~a~~~g~~vi~iT~~~~s---------------~la~~ad~~l~~~~~ 100 (126)
T cd05008 65 ALRLAKEKGAKTVAITNVVGS---------------TLAREADYVLYLRAG 100 (126)
T ss_pred HHHHHHHcCCeEEEEECCCCC---------------hHHHhCCEEEEecCC
Confidence 677889999999999777653 256789999988863
No 85
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=23.60 E-value=2.2e+02 Score=24.63 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCcEEEEEec--CCcchhhHhHHHHHHHHHHHHhcCC----EEEEEeChhhhhhhcCCCCHHHHHHHHH
Q 024548 10 APVIAGVAKSMGILTVGIVTT--PFSFEGRRRAVQAQEGIASLRDNVD----TLIVIPNDKLLTAVSQSTPVTEAFNLAD 83 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~--Pf~~Eg~~r~~nA~~gl~~L~~~~D----~~ividNd~L~~~~~~~~~l~~af~~~n 83 (266)
+||-+.+..+.|+.+.++.-. ||..+. ....+..-.+.|.++.. .++++|...++..+.
T Consensus 16 SpVAa~lm~krG~~V~~l~f~~~~~~~~~--~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~------------- 80 (197)
T PF02568_consen 16 SPVAAWLMMKRGCEVIALHFDSPPFTGEK--AREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEIL------------- 80 (197)
T ss_dssp HHHHHHHHHCBT-EEEEEEEE-TTTSSCC--CHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCHH--HHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHH-------------
Confidence 999999999999888777664 665543 34456666667777662 455566555443210
Q ss_pred HHHHhhhhhcccceecCceeeech-----HHHHHhhhccCceeEEEeeecCcc
Q 024548 84 DILRQGVRGISDIITIPGLVNVDF-----ADVRAIMANAGSSLMGIGTATGKT 131 (266)
Q Consensus 84 ~vl~~~I~gIt~~i~~~G~iNvDf-----aDv~tvL~~~g~a~~g~G~a~g~~ 131 (266)
... .+.+-.+|+ .--..++...|..++-+|++=|+.
T Consensus 81 ---~~~---------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 81 ---RGV---------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp ---HHS----------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred ---hcC---------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 000 111122222 223455666789999999987764
No 86
>PRK12338 hypothetical protein; Provisional
Probab=23.34 E-value=99 Score=28.84 Aligned_cols=25 Identities=20% Similarity=0.558 Sum_probs=21.3
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTV 25 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv 25 (266)
+||..|||=+-+-..+|+.+|+..+
T Consensus 9 i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 9 IGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4799999999999999999997543
No 87
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=23.14 E-value=3.7e+02 Score=22.49 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=20.4
Q ss_pred CCCCCC-CchHHHHHHHHHHcCCcEEEEE
Q 024548 1 MGGGTG-TGGAPVIAGVAKSMGILTVGIV 28 (266)
Q Consensus 1 lGGGTG-SGaapvia~iake~g~ltv~Vv 28 (266)
+|+|.- .++...+.++++.+++++++-.
T Consensus 34 vG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 34 VGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred ECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 366653 4778889999999998766544
No 88
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.00 E-value=1.8e+02 Score=23.88 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=33.5
Q ss_pred CCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhh
Q 024548 6 GTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (266)
Q Consensus 6 GSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~ 66 (266)
.||-++- +++.||+.|+.+++|.-.|.+. |.+.+|.++.++.+.-.
T Consensus 81 ~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~---------------la~~ad~~l~~~~~~~~ 129 (179)
T TIGR03127 81 GSGETESLVTVAKKAKEIGATVAAITTNPEST---------------LGKLADVVVEIPAATKK 129 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc---------------hHHhCCEEEEeCCcccc
Confidence 4565442 6677999999999997766532 56789999998876543
No 89
>PTZ00301 uridine kinase; Provisional
Probab=22.50 E-value=1.1e+02 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.647 Sum_probs=22.9
Q ss_pred CCCCCCCchHHHHHHHHHHc----CCcEEEEEecCCcc
Q 024548 1 MGGGTGTGGAPVIAGVAKSM----GILTVGIVTTPFSF 34 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~----g~ltv~Vvt~Pf~~ 34 (266)
++||+|||=+-+..++++++ |..++++++.-+.+
T Consensus 8 IaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 47999999877766665553 55566677775543
No 90
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=22.48 E-value=1.4e+02 Score=27.27 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCCchHHH---HHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeC
Q 024548 5 TGTGGAPV---IAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPN 62 (266)
Q Consensus 5 TGSGaapv---ia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividN 62 (266)
+.||-+|. ..+.||+.|+.|++|...|.+ .|.+.+|..|.++.
T Consensus 139 S~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s---------------~La~~aD~~I~~~~ 184 (299)
T PRK05441 139 AASGRTPYVIGALEYARERGALTIGISCNPGS---------------PLSKEADIAIEVVV 184 (299)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC---------------hhhHhCCEEEEcCC
Confidence 56777775 456688899999999876653 35678999988874
No 91
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.47 E-value=2.9e+02 Score=22.08 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEE
Q 024548 10 APVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (266)
Q Consensus 10 apvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivi 60 (266)
+|.++...+++|..+....+.|-..+.- ...|+++.+.+|-+|+-
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i------~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEI------REILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHH------HHHHHHHHhCCCEEEEC
Confidence 7889999999998887777777654432 23345555678887765
No 92
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=21.80 E-value=42 Score=31.73 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=11.3
Q ss_pred CCCCCCCchHHH
Q 024548 1 MGGGTGTGGAPV 12 (266)
Q Consensus 1 lGGGTGSGaapv 12 (266)
||||+|-|+.|+
T Consensus 92 m~GG~GaGavPL 103 (347)
T TIGR00783 92 MAGGVGAGIVPL 103 (347)
T ss_pred cCCCcccchhhH
Confidence 899999999997
No 93
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.79 E-value=3.3e+02 Score=25.64 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=49.2
Q ss_pred CCCCCCCchH-HHHHH----HHHHcCC---cEEEEEecCCcchhhHhHHHHHHHHHHHHhc-CCEEEE-E--eChhhhhh
Q 024548 1 MGGGTGTGGA-PVIAG----VAKSMGI---LTVGIVTTPFSFEGRRRAVQAQEGIASLRDN-VDTLIV-I--PNDKLLTA 68 (266)
Q Consensus 1 lGGGTGSGaa-pvia~----iake~g~---ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~-~D~~iv-i--dNd~L~~~ 68 (266)
+||||=|-.. ..+.+ +.+.++. .-+++-+.|-.... +-++.|++. ++.+-+ + -+++.++.
T Consensus 64 ~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~--------e~l~~Lk~~Gv~risiGvqS~~~~~L~~ 135 (378)
T PRK05660 64 IGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEA--------DRFVGYQRAGVNRISIGVQSFSEEKLKR 135 (378)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCH--------HHHHHHHHcCCCEEEeccCcCCHHHHHH
Confidence 5899999862 33444 3444442 36888888876542 344555544 222221 1 24556666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhhh
Q 024548 69 VSQSTPVTEAFNLADDILRQGVR 91 (266)
Q Consensus 69 ~~~~~~l~~af~~~n~vl~~~I~ 91 (266)
.+...+.+++++.+..+-...+.
T Consensus 136 l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 136 LGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCC
Confidence 77778888888877766555554
No 94
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=21.72 E-value=2.8e+02 Score=24.77 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhhh
Q 024548 12 VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLL 66 (266)
Q Consensus 12 via~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L~ 66 (266)
+.+++.+++|+.+--++..--.|+.+.+..|+...|+.|.+.-..-|+-.||.+.
T Consensus 91 ~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~ 145 (266)
T PRK12314 91 LYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVA 145 (266)
T ss_pred HHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCee
Confidence 3456667788866333333344777888889999999998876555555577763
No 95
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.69 E-value=2.2e+02 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCchHH---HHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEeChhh
Q 024548 6 GTGGAP---VIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKL 65 (266)
Q Consensus 6 GSGaap---via~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ividNd~L 65 (266)
-||-.+ -+++.|++.|+.+++|...+.+ .|.+.+|.+++++.+..
T Consensus 196 ~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s---------------~la~~ad~~l~~~~~~~ 243 (292)
T PRK11337 196 HSGRTSDVIEAVELAKKNGAKIICITNSYHS---------------PIAKLADYVICSTAQGS 243 (292)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEcCCCCc
Confidence 455544 2678899999999999776653 36779999999987653
No 96
>PRK14532 adenylate kinase; Provisional
Probab=21.45 E-value=82 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCCCCCCchHHHHHHHHHHcCCcEEE
Q 024548 1 MGGGTGTGGAPVIAGVAKSMGILTVG 26 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~g~ltv~ 26 (266)
|.|.-|||=+-+-.++|+++|...++
T Consensus 5 ~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 46899999999999999999976654
No 97
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.11 E-value=3.6e+02 Score=21.01 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHcCCcEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEE
Q 024548 8 GGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60 (266)
Q Consensus 8 Gaapvia~iake~g~ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivi 60 (266)
.-+|.+++..+++|..+......|-..+ .. ...|+++.+.+|.+|..
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~---~I---~~~l~~~~~~~dliitt 64 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKE---AI---KEALREALERADLVITT 64 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHH---HH---HHHHHHHHhCCCEEEEc
Confidence 3478899999999977666655562222 22 34455555667865554
No 98
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=20.88 E-value=92 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCCCCchHHHHHHHHHHcCCcEEEE
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILTVGI 27 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~ltv~V 27 (266)
.|-+|||=+-+..++|+.+|+..+.+
T Consensus 5 ~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 58899999999999999998766544
No 99
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=20.81 E-value=1e+02 Score=26.23 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCCCCchHHHHHHHHHHcCCcEEE
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILTVG 26 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~ltv~ 26 (266)
-|+.|||=+-+...+|+.+|...++
T Consensus 5 ~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 5 LGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCeee
Confidence 4889999999999999999987766
No 100
>PHA00520 packaging NTPase P4
Probab=20.45 E-value=2.4e+02 Score=26.28 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=22.7
Q ss_pred CCCCCchHHHHHHHHHHcC-CcEEEEEec
Q 024548 3 GGTGTGGAPVIAGVAKSMG-ILTVGIVTT 30 (266)
Q Consensus 3 GGTGSGaapvia~iake~g-~ltv~Vvt~ 30 (266)
||||||=+|.+-.++.+.| -.-|+++-+
T Consensus 131 G~t~sGKT~~~na~a~~vgg~d~y~vIR~ 159 (330)
T PHA00520 131 GGTGSGKTPLLNALAPDVGGGDKYAVIRW 159 (330)
T ss_pred ccCCCCCchhhhhhhhhhcCCCceeEEEe
Confidence 7899999999988888864 667777765
No 101
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=20.43 E-value=52 Score=31.46 Aligned_cols=13 Identities=46% Similarity=0.485 Sum_probs=10.5
Q ss_pred CCCCchHHHHHHH
Q 024548 4 GTGTGGAPVIAGV 16 (266)
Q Consensus 4 GTGSGaapvia~i 16 (266)
|+|||+||+.+=+
T Consensus 253 a~GTGIAPfrsfl 265 (406)
T cd06202 253 GPGTGIAPFRSFW 265 (406)
T ss_pred cCCcChHHHHHHH
Confidence 6899999986644
No 102
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=20.35 E-value=1.1e+02 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCCCCchHHHHHHHHHHcCCcEEE
Q 024548 2 GGGTGTGGAPVIAGVAKSMGILTVG 26 (266)
Q Consensus 2 GGGTGSGaapvia~iake~g~ltv~ 26 (266)
-|+.|||=+-+...+|+.+|...++
T Consensus 5 ~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 5 LGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 4889999999999999999876555
No 103
>PRK07952 DNA replication protein DnaC; Validated
Probab=20.30 E-value=3.2e+02 Score=24.26 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=19.3
Q ss_pred CCCCCCCchHHHHHHHHHHc---CCcEEEEEecC
Q 024548 1 MGGGTGTGGAPVIAGVAKSM---GILTVGIVTTP 31 (266)
Q Consensus 1 lGGGTGSGaapvia~iake~---g~ltv~Vvt~P 31 (266)
|-|.+|||=+-+.+.++.+. |. .+.+++.+
T Consensus 104 l~G~~GtGKThLa~aia~~l~~~g~-~v~~it~~ 136 (244)
T PRK07952 104 FSGKPGTGKNHLAAAICNELLLRGK-SVLIITVA 136 (244)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEHH
Confidence 45889999877766666653 44 44444543
No 104
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.26 E-value=2.5e+02 Score=27.16 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCCCCCCch-HHHHHHHHHH----cCC---cEEEEEecCCcchhhHhHHHHHHHHHHHHhcCCEEEEEe----Chhhhhh
Q 024548 1 MGGGTGTGG-APVIAGVAKS----MGI---LTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIP----NDKLLTA 68 (266)
Q Consensus 1 lGGGTGSGa-apvia~iake----~g~---ltv~Vvt~Pf~~Eg~~r~~nA~~gl~~L~~~~D~~ivid----Nd~L~~~ 68 (266)
+||||-|-. .+-+.++.+. ++. ..+++-+.|-... .+-++.|++.--.-+.+- +++.++.
T Consensus 108 ~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt--------~e~l~~l~~aG~~risiGvqS~~~~~L~~ 179 (453)
T PRK09249 108 WGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELD--------LEMLDALRELGFNRLSLGVQDFDPEVQKA 179 (453)
T ss_pred ECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCC--------HHHHHHHHHcCCCEEEECCCCCCHHHHHH
Confidence 589998876 4445554433 332 3577778886543 234455555432333332 5556666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhh
Q 024548 69 VSQSTPVTEAFNLADDILRQGV 90 (266)
Q Consensus 69 ~~~~~~l~~af~~~n~vl~~~I 90 (266)
++...+..++.+.+..+-...+
T Consensus 180 l~r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 180 VNRIQPFEFTFALVEAARELGF 201 (453)
T ss_pred hCCCCCHHHHHHHHHHHHHcCC
Confidence 7777777776666655444444
No 105
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.00 E-value=1.8e+02 Score=21.18 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcC-CCCcEEEEEEeCCCCCCeEEEEEEeecC
Q 024548 170 EVNAAAEVIYDLVD-PTANLIFGAVIDPSLSGQVSITLIATGF 211 (266)
Q Consensus 170 ei~~~~~~i~~~~~-~~a~Ii~G~~~d~~~~~~v~VtvIatg~ 211 (266)
+++++++.+.+++. -.+|=++|+.++-+ .+ .|+.-.|.+
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~d~s-~~--eV~ayGTAV 65 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRITCA-DG--KFLGYGTAV 65 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEEEcC-CC--EEEEEEEEE
Confidence 67788887777664 36899999999877 33 444444433
Done!