RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024548
(266 letters)
>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
Length = 384
Score = 366 bits (943), Expect = e-127
Identities = 139/276 (50%), Positives = 182/276 (65%), Gaps = 18/276 (6%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +GILTV +VT PFSFEG++R QA+EGI LR +VDTLIVI
Sbjct: 107 MGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVI 166
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V + TP+ +AF ADD+LRQ V+GI+D+IT PGL+N+DFADV+ +M+ G +
Sbjct: 167 PNDKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLA 226
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
+MGIG A+G+ RAR+AA AI SPLL+ + I A G++ NITGG DLTLFEV AAE+I
Sbjct: 227 MMGIGEASGEDRAREAAEKAISSPLLEDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIR 286
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRP-----------------L 222
+ DP AN+IFG VID L ++ +T+IATGF RQ +
Sbjct: 287 EAADPDANIIFGTVIDEELGDEIRVTVIATGFGRQAVVPEKQEQQPVETRTDEAPVAPLP 346
Query: 223 QASQLAQGDAAFGINRRPSSFSEGGSVEIPEFLKKK 258
Q Q A S + ++IP FL+++
Sbjct: 347 QEPQAVAEPAEASAAVEAQSEKDEDDLDIPAFLRRQ 382
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 304
Score = 323 bits (831), Expect = e-111
Identities = 133/211 (63%), Positives = 164/211 (77%), Gaps = 1/211 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK MG LTV +VT PFSFEG++R QA+EG+ LR +VDTLIVI
Sbjct: 94 MGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V ++ P+ EAF LADD+L Q V+GISD+IT PGL+N+DFADV+ +M N G +
Sbjct: 154 PNDKLLEVVDKNLPLLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVA 213
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
LMGIG A+G+ RA +AA AI SPLL+ I A G++ NITGGSDLTL EVN AAE+I
Sbjct: 214 LMGIGEASGENRAIEAAEKAISSPLLEDDSISGAKGVLVNITGGSDLTLEEVNEAAEIIK 273
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATG 210
+ VDP AN+IFGA ID SL ++ +T+IATG
Sbjct: 274 EKVDPDANIIFGATIDESLEDEIRVTVIATG 304
>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional.
Length = 378
Score = 276 bits (707), Expect = 6e-92
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 8/257 (3%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK G L VG+VT PF FEGR R +A+EGI LR+ DT+IVI
Sbjct: 122 MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVI 181
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
N++LL V + P+ +AF++AD+++ + V+GI++ IT P L+N+DFADV+++M G +
Sbjct: 182 DNNRLLDIV-PNLPIADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVA 240
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYD 180
+MG+G A G+ RA +A A+ +PLLD+ A G + +ITGG DLTL E N AA I +
Sbjct: 241 MMGVGEAKGQNRAMEAVRAALANPLLDVDYRGAKGALVHITGGPDLTLKEANEAASRITE 300
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKR-------QEESEGRPLQASQLAQGDAA 233
+DP AN+I+GA IDP + G+V + +I TG K + ++ + ++G
Sbjct: 301 ELDPEANIIWGARIDPDMEGKVRVMVIMTGVKSAQILGPGTQPQAIISRRSGERSRGKDE 360
Query: 234 FGINRRPSSFSEGGSVE 250
GI+ + +
Sbjct: 361 LGIDSIVAHQAGLSFPS 377
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 266 bits (682), Expect = 1e-88
Identities = 115/220 (52%), Positives = 155/220 (70%), Gaps = 5/220 (2%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +G LTV +VT PF FEG +R +A+EG+ L+ VDTLIVI
Sbjct: 111 MGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVI 170
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL V P+ +AF +ADD+L + V+GIS++IT PGL+N+DFADVRA+M+ G +
Sbjct: 171 PNDKLLEVVPN-LPLNDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVA 229
Query: 121 LMGIGTATGK---TRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVNAAAE 176
+MGIG A G+ RA +A A+ SPLLD I A G + +ITGG+DLTL E E
Sbjct: 230 MMGIGEALGEDTANRAFEAVRKALSSPLLDVDKISGAKGALVHITGGADLTLLEAEEIQE 289
Query: 177 VIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEE 216
+I +D AN+I+GA+IDP+L ++ +T++ATG K Q
Sbjct: 290 IITSELDQDANIIWGAIIDPNLEDEIRVTIVATGVKSQIF 329
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 250 bits (641), Expect = 1e-82
Identities = 126/227 (55%), Positives = 158/227 (69%), Gaps = 2/227 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK +G LTV +VT PFSFEG R A+EGI LR+ VDTLIVI
Sbjct: 105 MGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PNDKLL + TP+ EAFN ADD+L V+GI+++IT PGLVNVDFADVR +M G +
Sbjct: 165 PNDKLLKGKDK-TPIAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFA 223
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIG-IERATGIVWNITGGSDLTLFEVNAAAEVIY 179
LMGIG A+G+ RAR+A A+ SPLLD IE A G + NITGG DLTL EV A E I
Sbjct: 224 LMGIGRASGEDRAREAVEKALNSPLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQ 283
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQ 226
+++DP A++I+GA IDP L +V + +IATG + + S+
Sbjct: 284 EIIDPDADVIWGAYIDPGLRDEVRVLVIATGIRSSIALGKPAKEESK 330
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 184 bits (468), Expect = 4e-57
Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 2/211 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTGGAPV+A K +G LTV +VT PFS EG R + A EG +L VD L+VI
Sbjct: 94 LGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KL + + AF+ AD++L + V G+ I I G +NVDFADV+ +M G +
Sbjct: 154 PNEKLRQIG-EKASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVA 212
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
++G G+ RA +A A PLL IE A G + + G DL L E+ + +
Sbjct: 213 MVGYGSEDVTNRATEAVRKAALGPLLLPCEIEGAEGALLVMAGPPDLNLKEIERVRKWLE 272
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATG 210
+ +A + G ID + +V+++++ TG
Sbjct: 273 EQTGESATVRGGDYIDNAPRDKVAVSIVLTG 303
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 146 bits (372), Expect = 6e-44
Identities = 57/101 (56%), Positives = 70/101 (69%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK GILTV +VT PFSFEG R A+ G+ LR++VD+LIVI
Sbjct: 92 MGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFSFEGVVRPYNAELGLEELREHVDSLIVI 151
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPG 101
ND LL + P+ AF A+D+L Q V GI+D+I PG
Sbjct: 152 DNDALLDICGRKLPLRPAFKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 131 bits (333), Expect = 6e-39
Identities = 58/120 (48%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLD-IGIERATGIVWNIT 161
+NVDFADV+ +M G ++MGIG A+G+ RA +AA AI SPLL+ I A G++ NIT
Sbjct: 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEDSNIMGAKGVLVNIT 60
Query: 162 GGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSG-QVSITLIATGFKRQEESEGR 220
GG DLTL EVN A E I + DP A +I+G VID L G ++ +T+IATG +
Sbjct: 61 GGPDLTLKEVNEAMERIREKADPDAFIIWGPVIDEELGGDEIRVTVIATGIGSLFKRLSE 120
>gnl|CDD|204882 pfam12327, FtsZ_C, FtsZ family, C-terminal domain. This family
includes the bacterial FtsZ family of proteins. Members
of this family are involved in polymer formation. FtsZ
is the polymer-forming protein of bacterial cell
division. It is part of a ring in the middle of the
dividing cell that is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ is a GTPase, like tubulin. FtsZ can polymerise into
tubes, sheets, and rings in vitro and is ubiquitous in
eubacteria and archaea.
Length = 95
Score = 125 bits (316), Expect = 1e-36
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 118 GSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEV 177
G ++MG G A+G+ RA +AA AI SPLLD+ + A G++ NITGG DLTL E AAE
Sbjct: 1 GVAMMGTGEASGEDRAEEAAEAAISSPLLDVDLSGARGVLVNITGGPDLTLEEAEEAAER 60
Query: 178 IYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFK 212
I + VDP AN+IFGA IDP L G++ +T++ATG
Sbjct: 61 IREEVDPDANIIFGASIDPELEGEIRVTVVATGID 95
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 84.7 bits (210), Expect = 6e-20
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1 MGGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIV 59
+GGGTG+G APVIA + K + G LTV +VT PF+ EG R A G+ L ++ D++IV
Sbjct: 128 LGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKELIEHSDSVIV 187
Query: 60 IPNDKLLTAVSQSTPV-TEAFN 80
I ND LL + + AF
Sbjct: 188 IDNDALLEICDNQLDIKSPAFK 209
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 58.2 bits (141), Expect = 8e-10
Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 25/233 (10%)
Query: 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRR-RAVQAQEGIASLRDNVDTL 57
+GGGTG+G PV+A K L + P EG R + + +L ++ D L
Sbjct: 98 LGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCL 157
Query: 58 IVIPNDKLLTAVSQST-PVTEAFNLADDILRQGVRGISDIITIPGLVNVDF---ADVRAI 113
+VI N+ L + F+ +++L + ++ + G +NVD ++
Sbjct: 158 VVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVP 217
Query: 114 MANAG------SSLMGIGTATGKTRA-----RDAALNAIQSPLLDIGIERATGIVWNITG 162
+ L G+AT T R A + Q + D + + G
Sbjct: 218 FPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRG 277
Query: 163 GSDLTLFEVNAAAEVI---YDLVD-PTANLIFGAVIDPSLSG-QVSITLIATG 210
++ EV + + + G P S +VS L++
Sbjct: 278 --PVSPSEVREGIARVAPRTSHLSWSPPGIKVGVSPTPPASEHKVSALLLSNS 328
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 46.6 bits (111), Expect = 5e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 2 GGGTGTGGAPVIAGVAKSM-GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTG+GGAPV+A K + P EG R + A + +L + D +I+
Sbjct: 108 GGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILF 167
Query: 61 PNDKLLT 67
ND
Sbjct: 168 DNDAWKR 174
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB
family. This model represents a family that includes
the E. coli transaldolase homologs TalC and MipB, both
shown to be fructose-6-phosphate aldolases rather than
transaldolases as previously thought. It is related to
but distinct from the transaldolase family of E. coli
TalA and TalB. The member from Bacillus subtilis becomes
phosphorylated during early stationary phase but not
during exponential growth [Energy metabolism, Pentose
phosphate pathway].
Length = 213
Score = 40.2 bits (94), Expect = 4e-04
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 27 IVTTPFSFEGRRRAVQA--QEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADD 84
+V P + EG + AV+ +EGI + NV TL+ LL A + +T V+ DD
Sbjct: 81 VVKIPMTSEGLK-AVKILKKEGIKT---NV-TLVFSAAQALLAAKAGATYVSPFVGRLDD 135
Query: 85 ILRQGVRGISDIITIPGLVNVD----FADVRAIMANAGSSLMGIGTATGKTRARDAALNA 140
I G++ I ++ TI D A VR ++L+G AT N
Sbjct: 136 IGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQLFN- 194
Query: 141 IQSPLLDIGIER 152
PL DIG+ER
Sbjct: 195 --HPLTDIGLER 204
>gnl|CDD|225577 COG3034, COG3034, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 298
Score = 33.6 bits (77), Expect = 0.092
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQAS------QLAQGDAAF 234
+D + A+ GQ S+ ++A F+ E+ R + L G F
Sbjct: 159 QIDEIYGCVAKALQG----GQESVQVVADPFRMTIENMVRHRLSPLFSFWKALKPGYDNF 214
Query: 235 GINRRPSSFS--EGGSVEIPEFLKK 257
+ P + S +G V KK
Sbjct: 215 EVTFYPPTVSVCDGRYVFSFPTYKK 239
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 33.6 bits (77), Expect = 0.13
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 75 VTEAFNLADDILRQGVRG-ISDIITIPGLVNVDFADVRAIMANAGSSLM----GI----- 124
V+ A ++ + I++Q + G ++ ++ F ++ G+ L GI
Sbjct: 599 VSIANDIGEHIIKQLIIGVDDFETSLIW-ISTTFEGQGWSLSPLGNDLYDGSAGIALFFA 657
Query: 125 --GTATGKTRARDAALNAIQS-------PLLDIGIERATGI 156
TGK ++ A+ A+Q L I I TG+
Sbjct: 658 YLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGL 698
>gnl|CDD|180618 PRK06552, PRK06552,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 213
Score = 28.0 bits (63), Expect = 3.8
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 54 VDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAI 113
+ L + + ++ V + EA ++ +++ G++ I T P V ++ +
Sbjct: 4 SEILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPFASEV-IKELVEL 61
Query: 114 MANAGSSLMGIGTATGKTRARDAAL---NAIQSPLLDI 148
+ L+G GT AR A L I SP +
Sbjct: 62 YKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNR 99
>gnl|CDD|192929 pfam12062, HSNSD, heparan sulfate-N-deacetylase. This family of
proteins is are heparan sulfate N-deacetylase enzymes.
This protein is found in eukaryotes. This proteinenzyme
is often found associated with pfam00685.
Length = 487
Score = 28.2 bits (63), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 132 RARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVN 172
R +D ++N SPLL I + G D T+F++N
Sbjct: 171 RLKDCSVNP-LSPLLRI--TKIGEYEKGSLPGDDWTVFQIN 208
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional.
Length = 214
Score = 27.8 bits (63), Expect = 4.9
Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 39 RAVQA--QEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDI 96
+AV+A +EGI + NV TLI N LL A + +T V+ DDI G+ I DI
Sbjct: 92 KAVKALSKEGI---KTNV-TLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDI 147
Query: 97 ITIPGLVNVDF------ADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQS----PLL 146
I N F A VR M ++L G AT I+ PL
Sbjct: 148 REI--YDNYGFDTEIIAASVRHPMHVLEAALAGADIAT-------IPYKVIKQLFKHPLT 198
Query: 147 DIGIER 152
D G+E+
Sbjct: 199 DKGLEK 204
>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function
prediction only].
Length = 323
Score = 27.6 bits (62), Expect = 6.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 41 VQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITI 99
+ A E + RD D L++ T ++ PV + F L D L GVR + ++T+
Sbjct: 72 LPALERLLRRRDRPDRLVIET-----TGLADPAPVIQTF-LTDPELADGVR-LDGVVTV 123
>gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd). All
proteins in this family for which functions are known
are DNA-dependent ATPases that function in the process
of transcription-coupled DNA repair in which the repair
of the transcribed strand of actively transcribed genes
is repaired at a higher rate than the repair of
non-transcribed regions of the genome and than the
non-transcribed strand of the same gene. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). This family is
closely related to the RecG and UvrB families [DNA
metabolism, DNA replication, recombination, and repair].
Length = 926
Score = 27.3 bits (61), Expect = 9.9
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 16/66 (24%)
Query: 35 EGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGIS 94
E +R V+ +E + LR +VD L L+A TP+ +++ G+R +S
Sbjct: 581 EEQRFGVKQKEKLKELRTSVDVLT-------LSA----TPIPRTLHMS----MSGIRDLS 625
Query: 95 DIITIP 100
II P
Sbjct: 626 -IIATP 630
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,041,820
Number of extensions: 1391666
Number of successful extensions: 1401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 45
Length of query: 266
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 171
Effective length of database: 6,723,972
Effective search space: 1149799212
Effective search space used: 1149799212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)