RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024548
(266 letters)
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 388 bits (999), Expect = e-136
Identities = 131/283 (46%), Positives = 176/283 (62%), Gaps = 18/283 (6%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APV+A +AK MG LTVG+VT PFSFEGR+R QA G+ +++ VDTLIVI
Sbjct: 111 MGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVI 170
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND+LL V +STP+ EAF AD++LRQGV+GISD+I + G VN+DFADV+ IM+N GS+
Sbjct: 171 PNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSA 230
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYD 180
LMGIG ++G+ RA +AA AI SPLL+ I A G++ NITGG L+LFE AA+++ D
Sbjct: 231 LMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQD 290
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAF------ 234
D N+IFG VI+P L ++ +T+IATGF + S GR ++
Sbjct: 291 AADEDVNMIFGTVINPELQDEIVVTVIATGFDDKPTSHGRKSGSTGFGTSVNTSSNATSK 350
Query: 235 ------------GINRRPSSFSEGGSVEIPEFLKKKGRSRFPR 265
+ +IP F++ + R R
Sbjct: 351 DESFTSNSSNAQATDSVSERTHTTKEDDIPSFIRNREERRSRR 393
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 387 bits (996), Expect = e-136
Identities = 132/276 (47%), Positives = 188/276 (68%), Gaps = 16/276 (5%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG APVIA +AK +G LTVG+VT PF+FEGR+R +QA GI+++++ VDTLIVI
Sbjct: 105 MGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND++L V ++TP+ EAF AD++LRQGV+GISD+I PGL+N+DFADV+ IM+N GS+
Sbjct: 165 PNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYD 180
LMGIG ATG+ RA +AA AI SPLL+ I+ A G++ NITGG++L+L+EV AA+++
Sbjct: 225 LMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVAS 284
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAA------- 233
D N+IFG+VI+ +L ++ +T+IATGF QE+ +P + S
Sbjct: 285 ASDQDVNMIFGSVINENLKDEIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQSVPKR 344
Query: 234 ---------FGINRRPSSFSEGGSVEIPEFLKKKGR 260
R +S +++IP FL+ + +
Sbjct: 345 DAKREEPQQQNTVSRHTSQPADDTLDIPTFLRNRNK 380
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 382 bits (984), Expect = e-134
Identities = 126/278 (45%), Positives = 174/278 (62%), Gaps = 21/278 (7%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTGGAPV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVI
Sbjct: 105 EGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PND+LL + + +AF AD++L GV+GI+D+IT PGL+NVDFADV+ IM+ AG++
Sbjct: 165 PNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYD 180
LMGIG+A G+ R+ AA AI SPLL+ +E A G++ +I GGSDL LFE+N AA ++ D
Sbjct: 225 LMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQD 284
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQG---------- 230
P AN+IFG VID SL +V +T+IA GF + + A
Sbjct: 285 AAHPDANIIFGTVIDDSLGDEVRVTVIAAGFDVSGPGRKPVMGETGGAHRIESAKAGKLT 344
Query: 231 -----------DAAFGINRRPSSFSEGGSVEIPEFLKK 257
S + V++P F+++
Sbjct: 345 STLFEPVDAVSVPLHTNGATLSIGGDDDDVDVPPFMRR 382
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 370 bits (952), Expect = e-129
Identities = 97/232 (41%), Positives = 146/232 (62%), Gaps = 1/232 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VI
Sbjct: 131 LGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVI 190
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KL + + P+ AF +AD++L V+G+ ++IT GL+NVDFADV+A+M N G +
Sbjct: 191 PNEKLFE-IVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLA 249
Query: 121 LMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYD 180
++GIG + + RA++A A+ SPLLD+ I+ ATG + ++ G DLTL E +
Sbjct: 250 MIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSS 309
Query: 181 LVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDA 232
+DP A +I+GA ID +L V + L+ TG + + E L+ +L
Sbjct: 310 RLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRKKLELTGI 361
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 362 bits (931), Expect = e-126
Identities = 88/230 (38%), Positives = 132/230 (57%), Gaps = 1/230 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APVIA AK MGILTV + T PF FEG R+ +A +G+ L+++ D IVI
Sbjct: 101 LGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVI 160
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
NDK+ +++ + +AF D +L + VRGI+ I+ P ++NVDFADVR + G S
Sbjct: 161 HNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLS 220
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
++G+G G +A A A+ SPLL IE A ++ I D+ V+ E I+
Sbjct: 221 IIGMGEGRGDEKADIAVEKAVTSPLLEGNTIEGARRLLVTIWTSEDIPYDIVDEVMERIH 280
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQ 229
V P A +IFGAV++P + + ++AT F ++ G ++ +
Sbjct: 281 SKVHPEAEIIFGAVLEPQEQDFIRVAIVATDFPEEKFQVGEKEVKFKVIK 330
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 361 bits (930), Expect = e-126
Identities = 95/232 (40%), Positives = 146/232 (62%), Gaps = 3/232 (1%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTG +PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I
Sbjct: 115 FGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKI 174
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVD--FADVRAIMANAG 118
N+KL+ + + + +AF AD+ L QGV+GIS++IT G + + FA + ++M +AG
Sbjct: 175 SNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAG 234
Query: 119 SSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVI 178
++++GIG G+ RAR+AA A++S L++ +E A+ IV+NIT S++ + EV+ AA +I
Sbjct: 235 AAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMII 294
Query: 179 YDLVDPTANLIFGAVIDPSLSG-QVSITLIATGFKRQEESEGRPLQASQLAQ 229
A++ FG + D + ++ + IAT F +++ + +
Sbjct: 295 RQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDKILFPEGDIPAIYR 346
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 359 bits (924), Expect = e-125
Identities = 112/267 (41%), Positives = 159/267 (59%), Gaps = 1/267 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 105 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KLLT + + + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G +
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
+MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E + +I
Sbjct: 225 MMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIE 284
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQASQLAQGDAAFGINRR 239
A + G VID + ++ +T++ATG + E + + + A +R
Sbjct: 285 QFASEHATVKVGTVIDADMRDELHVTVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQR 344
Query: 240 PSSFSEGGSVEIPEFLKKKGRSRFPRA 266
++ P ++ + A
Sbjct: 345 EQQSVNYRDLDRPTVMRNQSHGSAATA 371
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 349 bits (899), Expect = e-122
Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 1/215 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 105 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 164
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSS 120
PN+KLLT + + + AF ADD+L VRGISDII PG++NVDFADV+ +M+ G +
Sbjct: 165 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMA 224
Query: 121 LMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDLTLFEVNAAAEVIY 179
+MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G DL+L E + +I
Sbjct: 225 MMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIE 284
Query: 180 DLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQ 214
A + G VID + ++ +T++ATG +
Sbjct: 285 QFASEHATVKVGTVIDADMRDELHVTVVATGLGAR 319
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 181 bits (461), Expect = 3e-55
Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 29/258 (11%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLR---DNVDTL 57
+GGGTGTG + ++T P E + A I S+ + ++
Sbjct: 121 LGGGTGTGALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSI 180
Query: 58 IVIPNDKLLTAVSQSTP---VTEAFNLADDILRQGVRGISDIITIP---GLVNVDFADVR 111
++I N KL + P E + ++ + + I+ + + + D ++
Sbjct: 181 VLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFA 240
Query: 112 AIMANAGSSLMGIGTATGKT-------RARDAALNAIQSPLLDIG----IERATGIVWNI 160
++ G + NA++ +L +E A +I
Sbjct: 241 QVINTPGVLSLAKLELKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKKSALSI 300
Query: 161 TGGS-----DLTLFEVNAAAEVIYDLVDPT----ANLIFGAVIDPSLSGQVSITLIATGF 211
+N + + V + G
Sbjct: 301 VTSPLRAGRLYNFSFLNQMENFLKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGL 360
Query: 212 KRQEESEGRPLQASQLAQ 229
+ + +++ +
Sbjct: 361 PLPKRVSDIIDEITRIKE 378
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 136 bits (343), Expect = 3e-38
Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 30/274 (10%)
Query: 1 MGGGTGTGGAPVIAGVAKSM--GILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVD--- 55
M GG G+G P I G+AK M + P + E + A + + +
Sbjct: 98 MAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGK 157
Query: 56 --TLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAI 113
++ ++ N+K E + + ++ VD ++ +
Sbjct: 158 DISIYLLDNNKR-----------EKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKL 206
Query: 114 MANAGSSLMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGGSDL-TLFEV 171
+ S+++ K + A +++ + + + + T D+ + +
Sbjct: 207 LTMKKSNVI--LEFDDKEDIQVALAKSLKESIFAEYTTNTCEFMGISTTRVVDVEAIKSI 264
Query: 172 NAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGF--------KRQEESEGRPLQ 223
+ + N++ I+P + + I + E P+
Sbjct: 265 VGYPRRTFKGYNSKKNIVVATGIEPQKTTVQMMNEIIEDKMKQRREVTSKSENMIIEPIA 324
Query: 224 ASQLAQGDAAFGINRRPSSFSEGGSVEIPEFLKK 257
+ S + ++I +F K
Sbjct: 325 LDDEDNKSVISSNEKEISIDNVEKEIDINDFFSK 358
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 51.9 bits (123), Expect = 6e-08
Identities = 36/262 (13%), Positives = 74/262 (28%), Gaps = 34/262 (12%)
Query: 1 MGGGTGTGGAPVIAGVAKSMG--ILTVGIVTTPFSFEGRRRAVQA-------------QE 45
GGG GTG ++ + + +++ P +
Sbjct: 157 AGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRL 216
Query: 46 GIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITI------ 99
S + +IV N ++ + + N + + +
Sbjct: 217 FGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPE 276
Query: 100 ---PGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIG------I 150
V D +D+ +++ G + IG A + N+I+ L +
Sbjct: 277 NYGSDNVTYDPSDLIKLLSIPG-RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQF 335
Query: 151 ERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTA--NLIFGAVIDPSL-SGQVSITLI 207
E AT + S+ F+ I + + + I G DP + I
Sbjct: 336 ETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTI 395
Query: 208 ATGFKRQEESEGRPLQASQLAQ 229
G + + +LA+
Sbjct: 396 FAGMTMPKRYISLAREGKELAE 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 53/306 (17%), Positives = 93/306 (30%), Gaps = 105/306 (34%)
Query: 3 GGTGTGG----APVIAG----------VAKSMGILT-VGIV---TTP---FSFEGRRRAV 41
G TG A IA V K++ +L +G+ P ++
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 42 QAQEGIAS----LRD-NVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDI 96
+ EG+ S + + + + + + P + ++ L G + + +
Sbjct: 329 ENNEGVPSPMLSISNLTQEQV-----QDYVNKTNSHLPAGKQVEIS---LVNGAKNL--V 378
Query: 97 ITIP-----GLVNVDFADVRAIMANAG---------------------------SSLMGI 124
++ P GL +R A +G S L+
Sbjct: 379 VSGPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV- 433
Query: 125 GTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVD- 183
A+ D N + DI I V++ GSDL + + +VD
Sbjct: 434 -PASDLINK-DLVKNNVSFNAKDIQIP-----VYDTFDGSDLR----VLSGSISERIVDC 482
Query: 184 ----P---TANLIFGA--VID--P-SLSGQVSITLIATGFKRQEESEG-RPLQASQLAQG 230
P F A ++D P SG +T R ++ G R + A L
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLT------HRNKDGTGVRVIVAGTLDIN 536
Query: 231 -DAAFG 235
D +G
Sbjct: 537 PDDDYG 542
Score = 35.8 bits (82), Expect = 0.014
Identities = 44/286 (15%), Positives = 81/286 (28%), Gaps = 110/286 (38%)
Query: 50 LRD-------NVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILR-----QGVRGISDII 97
LRD V LI + L + + + F +IL ++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 98 TIP------GLV------------NVDFADVRAIMANAGSSLMGIG------TATGKTRA 133
+IP G++ ++R+ + G++ G A +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWE 290
Query: 134 --RDAALNAIQSPLLDIGIE--RATGIVWNITGGSDLTLFEVNAAAEVIYDLVD-----P 184
+ AI L IG+ A + ++ D ++ P
Sbjct: 291 SFFVSVRKAITV-LFFIGVRCYEAYP--------------NTSLPPSILEDSLENNEGVP 335
Query: 185 TANLIFGAVIDPSL----------------SGQVSITLI-------ATGFKRQEESEGRP 221
+ L ++ + + QV I+L+ +G +
Sbjct: 336 SPML---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS------- 385
Query: 222 LQA--SQLAQGDAAFGIN--RRPSSFSEGGSVEIPEFLKKKGRSRF 263
L L + A G++ R P FSE K K +RF
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIP--FSE---------RKLKFSNRF 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-04
Identities = 45/266 (16%), Positives = 76/266 (28%), Gaps = 96/266 (36%)
Query: 48 ASLRDNVDTLI---VIPNDKLLTAVSQS----TPVT--EAF-NLADDILRQGVRGISDII 97
S+RD + T + DKL T + S P + F L+ +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAH------ 386
Query: 98 TIPGLV------NVDFADVRAIMA-------------NAGSSLMGIGTATGKTRARDAAL 138
IP ++ +V +DV ++ + S+ I + AL
Sbjct: 387 -IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 139 NA--IQS--------------PLLD------IG------------------------IE- 151
+ + P LD IG +E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 152 --RATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVID--PSLSGQVSIT-- 205
R WN +G TL ++ I D DP + A++D P + + +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 206 --LIATGFKRQEESEGRPLQASQLAQ 229
L+ E E +A + Q
Sbjct: 565 TDLLRIAL--MAEDEAIFEEAHKQVQ 588
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 36.8 bits (84), Expect = 0.006
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIV-TTPFSFEGRRRAVQAQEGIASLRDNVDTLIV 59
+GGG+G+ P+I G V V S + + + + ++ N IV
Sbjct: 90 LGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIV 149
Query: 60 I---PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISD 95
+ PN + + S + + E ++ Q +
Sbjct: 150 VNYVPNTQGRSYESINDEIAEKIRKVVLLVNQNHGRLDV 188
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 28.9 bits (64), Expect = 1.9
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 93 ISDIITIPGLVNVDFADVRAIMANA---GSSLMGIGTATGKTRARDAALNAIQSPLLDIG 149
I + G + F D +AI A G G G T R A +L+ G
Sbjct: 3 IKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILENG 62
Query: 150 IE---RATGIVWNITGGSDLTLFEVNAAAEVIYDLVDP 184
+ ++ GG D LF + D + P
Sbjct: 63 AVAVGDCAAVQYSGAGGRD-PLFLAEHFIPFLNDHIKP 99
>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification
enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus
gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*
Length = 219
Score = 27.9 bits (62), Expect = 2.8
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 104 NVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIG---------IERAT 154
+ + R A + L+ P L G I R
Sbjct: 24 ETPYQERRYKAGPA----PDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAILRYI 79
Query: 155 GIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIF 190
N+ G +++ V+ + DL A L +
Sbjct: 80 ARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCY 115
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 26.8 bits (60), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
E F+ L D+ +RQG++ S+ T P L V + D+ + G
Sbjct: 50 ETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENG 96
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL 102
+F+ +D+ +RQG++ S T P L
Sbjct: 49 SSFDIFSDEEVRQGLKAYSSWPTYPQL 75
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 26.1 bits (58), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF 107
E F+ L D+ +RQG++ S+ T P L V D
Sbjct: 48 ETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDL 80
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 27.1 bits (60), Expect = 6.7
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 14 AGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEG 46
G S +L + P SF + + V G
Sbjct: 84 VGAVASSAVLVIKERKLPPSFARKLKDVHETLG 116
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 26.1 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
E N L +++LRQG++ S+ T P L + +F D+ G
Sbjct: 51 EDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTG 97
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 26.2 bits (57), Expect = 8.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 13 IAGVAKSMGILTVG 26
IAG A+SMG+ VG
Sbjct: 126 IAGSARSMGVEVVG 139
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 25.8 bits (57), Expect = 8.4
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 77 EAFN-LADDILRQGVRGISDIITIPGL-VNVDF---ADVRAIMANAG 118
A+N L D LR+G++ S+ TIP L VN +F DV MA +G
Sbjct: 52 AAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSG 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,166,125
Number of extensions: 269361
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 38
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)