RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024548
(266 letters)
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 135 bits (341), Expect = 6e-40
Identities = 63/104 (60%), Positives = 77/104 (74%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
MGGGTGTG AP+IA VAK MGILTV +VT PF FEGR+R A EGI +L ++VD+LI I
Sbjct: 95 MGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITI 154
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVN 104
PN+KLLT + + + AF ADD+L VRGISDII PG++N
Sbjct: 155 PNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMIN 198
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 131 bits (330), Expect = 3e-38
Identities = 62/104 (59%), Positives = 83/104 (79%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTGGAPV+A +A+ +G LTVG+VT PFSFEG+RR+ QA+ GIA+LR++ DTLIVI
Sbjct: 95 EGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVI 154
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVN 104
PND+LL + + +AF AD++L GV+GI+D+IT PGL+N
Sbjct: 155 PNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLIN 198
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 121
Score = 126 bits (319), Expect = 1e-37
Identities = 38/115 (33%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
+ FA + ++M +AG++++GIG G+ RAR+AA A++S L++ +E A+ IV+NIT
Sbjct: 4 LTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITA 63
Query: 163 GSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLS-GQVSITLIATGFKRQEE 216
S++ + EV+ AA +I A++ FG + D + ++ + IAT F +++
Sbjct: 64 PSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDK 118
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 120 bits (303), Expect = 2e-35
Identities = 59/107 (55%), Positives = 78/107 (72%)
Query: 105 VDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGS 164
VDFADV+ IM+ AG++LMGIG+A G+ R+ AA AI SPLL+ +E A G++ +I GGS
Sbjct: 1 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 60
Query: 165 DLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGF 211
DL LFE+N AA ++ D P AN+IFG VID SL +V +T+IA GF
Sbjct: 61 DLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGF 107
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 123 bits (309), Expect = 4e-35
Identities = 48/102 (47%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
+GGGTGTG APV+A ++K +G LTV +VT PF EG+ R A EG+ L+ + DTL+VI
Sbjct: 109 LGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVI 168
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGL 102
PN+KL + + P+ AF +AD++L V+G+ ++IT GL
Sbjct: 169 PNEKLFE-IVPNMPLKLAFKVADEVLINAVKGLVELITKDGL 209
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 118 bits (297), Expect = 2e-34
Identities = 48/121 (39%), Positives = 74/121 (61%)
Query: 103 VNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITG 162
+NVDFADV+A+M N G +++GIG + + RA++A A+ SPLLD+ I+ ATG + ++ G
Sbjct: 1 INVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMG 60
Query: 163 GSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPL 222
DLTL E + +DP A +I+GA ID +L V + L+ TG + + E L
Sbjct: 61 PEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGL 120
Query: 223 Q 223
+
Sbjct: 121 K 121
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 113 bits (283), Expect = 2e-32
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 105 VDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLL-DIGIERATGIVWNITGG 163
VDFADV+ +M+ G ++MG G A+G RAR+A AI++PLL D+ ++ A GI+ NIT G
Sbjct: 1 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 60
Query: 164 SDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGF 211
DL+L E + +I A + G VID + ++ +T++ATG
Sbjct: 61 PDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGL 108
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 115 bits (288), Expect = 4e-32
Identities = 57/101 (56%), Positives = 72/101 (71%)
Query: 1 MGGGTGTGGAPVIAGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVI 60
GGGTGTG +PVIA +AK MGILTV IVTTPF FEG R +A EG+ LR +VDTLI I
Sbjct: 94 FGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKI 153
Query: 61 PNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPG 101
N+KL+ + + + +AF AD+ L QGV+GIS++IT G
Sbjct: 154 SNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRG 194
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal
and insertion domains {Vibrio cholerae [TaxId: 666]}
Length = 197
Score = 27.2 bits (60), Expect = 1.8
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 145 LLDIGIERATGIVWNITGGSDLTLFEVNAAA-------EVIYDLVDPTANLIFGAVIDPS 197
++ + I+ + G+V N+ G S + + A E+ Y ++ T L +
Sbjct: 60 VVTLSIDESGGLVANLNGVSAPIILQSEHAKVHSFHDYELQYSALNHTTTLFVDGQQITT 119
Query: 198 LSGQVS 203
+G+VS
Sbjct: 120 WAGEVS 125
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 25.9 bits (57), Expect = 6.3
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 154 TGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATG 210
+GI G + + + N AAEV +D + + + P + I + G
Sbjct: 54 SGIAAFAFGSTAILIILFNMAAEVHFDPLQFFRQFFWLGLYPPKAQYGMGIPPLHDG 110
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S
ribosomal protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 24.2 bits (53), Expect = 6.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 13 IAGVAKSMGILTVG 26
+AG A+SMG+ G
Sbjct: 56 VAGTARSMGVTIEG 69
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 25.8 bits (55), Expect = 6.8
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 152 RATGIVWNITGGSDLTLFEVNAAAEVI 178
+ G+ N V VI
Sbjct: 223 QILGVQTNDPTLGPNGFIPVTPKGRVI 249
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 25.3 bits (55), Expect = 6.8
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 19 SMGILTVGIVTTPFSFEGRRRAVQAQEGIASLRDNVDTLIVIPNDKLLTAVSQSTPVTEA 78
S+GI T G V T + + + DN +++ + + + +
Sbjct: 16 SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGK- 74
Query: 79 FNLADDILRQGVRGISDI-----ITIPGLVNVDFAD 109
F L + RG+ I I G++NV D
Sbjct: 75 FELTG--IPPAPRGVPQIEVTFDIDANGILNVSAVD 108
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 23.4 bits (51), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 13 IAGVAKSMGILTV 25
I G AKSMGI V
Sbjct: 58 IEGTAKSMGIEVV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 945,491
Number of extensions: 42318
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 21
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)