BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024550
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 21/163 (12%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ E Y +G +G LL GPPGTGK+ L A+A + + S+ LG
Sbjct: 29 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 88
Query: 70 NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + + + SI+ +++ID + ++RAA +++G ++++Q TL+
Sbjct: 89 ASRVRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGG--VVSGNDEREQ---TLN 136
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S I++ TN E LDPAL+RPGR D +
Sbjct: 137 QLLAEMDGFGSENA-PVIVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 38/251 (15%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL----- 67
L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 27 LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 86
Query: 68 -LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 87 GVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ--- 133
Query: 125 TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLA 184
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 134 TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
Query: 185 SNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEFL 234
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 192 KVHM--RRVPLAPDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEFE 246
Query: 235 ESKKRANDGSE 245
++K + G E
Sbjct: 247 KAKDKIMMGLE 257
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 17 LQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GN 70
L + + Y ++G RG LLYGPPGTGK+ L+ A+AN K + S + G
Sbjct: 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251
Query: 71 NDLRHIL-IATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSG 128
+R + +A EN SI+ ++++D A F A ++ L
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSI------------ATKRF-DAQTGSDREVQRILIE 298
Query: 129 LLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S + +I TN + LDPALLRPGR+D I
Sbjct: 299 LLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKI 338
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 23/163 (14%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ + R+G +G LL GPPGTGK+ L A+A + + S+ +G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R A L G+++++Q TL+
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDA-------VGRHRGAG---LGGGHDEREQ---TLN 140
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 141 QLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 39/255 (15%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL---- 68
+E L E Y +G +G +LYG PGTGK+ L A+AN + S L+
Sbjct: 198 VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257
Query: 69 --GNNDLRHIL-IATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G R I +A EN SI+ +++ID ++ +N +G E++ Q
Sbjct: 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAI------GTKRYDSN-----SGGEREIQR-- 304
Query: 125 TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI---NMSHCTPSGFK 181
T+ LLN +DG + GD ++I+ TN E LDPAL+RPGR+D I N T
Sbjct: 305 TMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKIL 362
Query: 182 MLASNYLGIAEHPLFVEIEKLIATA-KVTPADVAEQLMRNEAPEFALSGLIEFLESKKRA 240
+ ++ + ++E V +E L+ T ++ AD+ Q M EA GL+ E + +
Sbjct: 363 GIHTSKMNLSED---VNLETLVTTKDDLSGADI--QAMCTEA------GLLALRERRMQV 411
Query: 241 NDGSEAKEAEERAVQ 255
+ K+A+ER ++
Sbjct: 412 T-AEDFKQAKERVMK 425
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 23/163 (14%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ + R+G +G LL GPPGTG + L A+A + + S+ +G
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R A L G+++++Q TL+
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDA-------VGRHRGAG---LGGGHDEREQ---TLN 140
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 141 QLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 17 LQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GN 70
L+ E + +VG +G LLYGPPGTGK+ L A+A + S L+ G
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 71 NDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSG 128
+ ++ I + K SI+ +++ID A D L G ++ TL
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEIDAIA----------AKRTDALTGG---DREVQRTLMQ 143
Query: 129 LLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
LL +DG + + GD + II TN + LDPA+LRPGR D I + G
Sbjct: 144 LLAEMDG-FDARGDVK-IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNND 72
+E L+ E ++RVG +G LLYGPPGTGK+ L A+A + + S ++
Sbjct: 197 IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256
Query: 73 LRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNF 132
I E ++ + CI D + A G ++ TL LL
Sbjct: 257 GESARIIRE--MFAYAKEHEPCIIFMDEVD---AIGGRRFSEGTSADREIQRTLMELLTQ 311
Query: 133 IDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+DG + + G +II+ TN + LDPALLRPGR+D + + +G
Sbjct: 312 MDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 23/166 (13%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL---- 68
+E ++ E + +G A +G +LYGPPGTGK+ L A+A++ + + L+
Sbjct: 164 IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223
Query: 69 --GNNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G+ +R + + SI+ +++ID + R G + + Q
Sbjct: 224 GEGSRMVRELFVMAREHAPSIIFMDEIDS-------IGSTRVEGS----GGGDSEVQR-- 270
Query: 125 TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
T+ LLN +DG +S + II TN + LDPALLRPGR+D I
Sbjct: 271 TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKI 314
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL------ELSNLLG 69
+L+ E + ++G +G LL GPPG GK+ L A+A + + E+ LG
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + ++ I+ +++ID + + R+ ++G+ ++ TL+
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEIDA-------VGKKRSTT----MSGFSNTEEEQ-TLN 131
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG+ ++ D I++ +TN + LD AL+RPGR+D H+
Sbjct: 132 QLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ + +G +G LL GPPG GK+ L A+A + S+ + G
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R + + G ++++Q TL+
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---VGGGNDEREQ---TLN 155
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
LL +DG +++ TN + LDPALLRPGR D I +
Sbjct: 156 QLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ + +G +G LL GPPG GK+ L A+A + S+ + G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R + + G ++++Q TL+
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---VGGGNDEREQ---TLN 164
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
LL +DG +++ TN + LDPALLRPGR D I +
Sbjct: 165 QLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ + +G +G LL GPPG GK+ L A+A + S+ + G
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R + + G ++++Q TL+
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---VGGGNDEREQ---TLN 140
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
LL +DG +++ TN + LDPALLRPGR D I +
Sbjct: 141 QLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ + +G +G LL GPPG GK+ L A+A + S+ + G
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + + + I+ +++ID + R R + + G ++++Q TL+
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDA-------VGRKRGSG---VGGGNDEREQ---TLN 164
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
LL +DG +++ TN + LDPALLRPGR D I +
Sbjct: 165 QLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 25/163 (15%)
Query: 17 LQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GN 70
++R + ++ +G +G L+YGPPGTGK+ L A A L L+ G
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 71 NDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSG 128
+R + K +I+ ++++D R ++ + ++ T+
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAIG--TKRFDSEKSGD-----------REVQRTMLE 307
Query: 129 LLNFIDGLWSSCGDERI-IIFTTNHKERLDPALLRPGRMDMHI 170
LLN +DG S D+R+ ++ TN + LDPALLR GR+D I
Sbjct: 308 LLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKI 347
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 19/159 (11%)
Query: 21 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLR 74
E + +G +G LLYGPPGTGK+ A+AN + S L+ G +R
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 75 HILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID 134
+ K CI D + A D G + T+ L+ +D
Sbjct: 293 ELFEMARTKK--------ACIIFFDEIDAVGGARFD---DGAGGDNEVQRTMLELITQLD 341
Query: 135 GLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMS 173
G + G+ +++ F TN LDPALLRPGR+D + S
Sbjct: 342 G-FDPRGNIKVM-FATNRPNTLDPALLRPGRIDRKVEFS 378
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76
+ + G +G L YGPPG GK+ L A+AN + + ++ LL ++R I
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100
Query: 77 LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL 136
+ V+ + D +++AR N ++ ++ +L +DG+
Sbjct: 101 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM 149
Query: 137 WSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
S II TN + +DPA+LRPGR+D I
Sbjct: 150 --STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76
+ + G +G L YGPPG GK+ L A+AN + + ++ LL ++R I
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 77 LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL 136
+ V+ + D +++AR N ++ ++ +L +DG+
Sbjct: 563 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM 611
Query: 137 WSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
S II TN + +DPA+LRPGR+D I
Sbjct: 612 --STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN + + +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76
+ + G +G L YGPPG GK+ L A+AN + + ++ LL ++R I
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562
Query: 77 LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL 136
+ V+ + D +++AR N ++ ++ +L +DG+
Sbjct: 563 FDKARQAAPCVL-----FFDELDSIAKARGGNIGDGGGAADR------VINQILTEMDGM 611
Query: 137 WSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
S II TN + +DPA+LRPGR+D I
Sbjct: 612 --STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN + + +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY--LKF-DVYDLELSNL-LGNND--LRHI 76
++ +G G LL GPPG GK+ L A+AN L F V EL N+ +G ++ +R +
Sbjct: 36 FKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95
Query: 77 LIATENKSILVV--EDIDC-CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFI 133
+N + V+ +++D C DR + A ++ LL +
Sbjct: 96 FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVR-----------------VVNQLLTEM 138
Query: 134 DGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPS 178
DGL + + I+ TN + +DPA+LRPGR+D + + P+
Sbjct: 139 DGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLE-LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN F + E +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN + + +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLE-LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN F + E +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLE-LSNLL 68
+E L+ ++ +G RG LLYGPPGTGK+ + A+AN F + E +S L
Sbjct: 220 VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279
Query: 69 G--NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G ++LR E +I+ ++++D IA ++ +
Sbjct: 280 GESESNLRKAFEEAEKNAPAIIFIDELDA-------------------IAPKREKTHGEV 320
Query: 125 ---TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
+S LL +DGL I++ TN +DPAL R GR D +++ +G
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 28 KAWKRGYLLYGPPGTGKSSL---IAAMANYLKFDVYDLEL-SNLLGNND-LRHILIATEN 82
+A RG LL+GPPG GK+ L +AA +N F++ L S +G + L L A
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 83 K---SILVVEDIDC--CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW 137
+ SI+ ++ +D C + +R +FLI DG+
Sbjct: 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIE------------------FDGVQ 246
Query: 138 SSCGDERIIIF-TTNHKERLDPALLR 162
S GD+R+++ TN + LD A+LR
Sbjct: 247 -SAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 32 RGYLLYGPPGTGKSSLIAAMA----NYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK 83
RG LL+GPPGTGKS L A+A N F + +L S LG ++ ++++ +A ENK
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 84 -SILVVEDID--CCIELQDRLSRARAANPDFLI 113
SI+ +++ID C ++ AR +FL+
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 260
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 32 RGYLLYGPPGTGKSSLIAAMA----NYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK 83
RG LL+GPPGTGKS L A+A N F + +L S LG ++ ++++ +A ENK
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 84 -SILVVEDID--CCIELQDRLSRARAANPDFLI 113
SI+ +++ID C ++ AR +FL+
Sbjct: 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 138
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----------YLKFDVYD 61
+E F +F + A ++G LYG G GKS L+AAMA+ L F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 62 LELSNLLGNNDLRHILIATENKSILVVEDI 91
+++ N + N ++ + A +N +L+++DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDI 223
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 33 GYLLYGPPGTGKSSL---IAAMANYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK-S 84
G LLYGPPGTGKS L +A AN F V +L S +G ++ ++ + +A ENK S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 85 ILVVEDIDC 93
I+ ++++D
Sbjct: 122 IIFIDEVDA 130
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 33 GYLLYGPPGTGKSSL---IAAMANYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK-S 84
G LLYGPPGTGKS L +A AN F V +L S +G ++ ++ + +A ENK S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 85 ILVVEDIDC 93
I+ ++ +D
Sbjct: 146 IIFIDQVDA 154
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 33 GYLLYGPPGTGKSSL---IAAMANYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK-S 84
G LLYGPPGTGKS L +A AN F V +L S +G ++ ++ + +A ENK S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 85 ILVVEDIDC 93
I+ ++ +D
Sbjct: 113 IIFIDQVDA 121
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 33 GYLLYGPPGTGKSSL---IAAMANYLKFDVYDLEL-SNLLGNND--LRHIL-IATENK-S 84
G LLYGPPGTGKS L +A AN F V +L S +G ++ ++ + +A ENK S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 85 ILVVEDIDC 93
I+ ++ +D
Sbjct: 131 IIFIDQVDA 139
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 24/105 (22%)
Query: 21 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT 80
E ++RV + L+ GP G+GKS+ +AAM +YL NN H ++
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYL--------------NNTKYHHILTI 158
Query: 81 ENKSILVVEDIDCCIE----------LQDRLSRARAANPDFLIAG 115
E+ V E C + + L A +PD ++ G
Sbjct: 159 EDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG GK++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG GK++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG GK++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG GK++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG GK++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL 68
L YGPPGTGK+S I A+A ++Y SN++
Sbjct: 50 LFYGPPGTGKTSTIVALAR----EIYGKNYSNMV 79
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI 91
LL GPPG G+++L +A+ L+ +++ L+ D+ IL + E +L +++I
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 33/193 (17%)
Query: 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILIATE 81
+A +G LL+GPPG GK+ L A+A ++ ++L G +R +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 82 N--KSILVVEDIDCCIELQDRLSR--ARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW 137
+ SI+ ++++D + + +R +FL+ DGL
Sbjct: 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVE------------------FDGLP 152
Query: 138 SSCGDERIIIF-TTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF 196
+ +RI++ TN + LD A LR R + +S ++L + L PL
Sbjct: 153 GNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL- 209
Query: 197 VEIEKLIATAKVT 209
+ E L AK+T
Sbjct: 210 -DTEALRRLAKIT 221
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILIAT--ENK 83
+G LL+GPPGTGK+ + +A+ + + S+L G +R + +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 84 SILVVEDIDCCIELQ--DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG 141
+++ +++ID + + +R +FL+ +DG +S
Sbjct: 178 AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ------------------LDGATTSSE 219
Query: 142 DERIIIFTTNHKERLDPALLR 162
D +++ TN + +D A R
Sbjct: 220 DRILVVGATNRPQEIDEAARR 240
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDV 59
+L+GPPGTGK++L +A Y DV
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADV 78
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 14 ERFLQRKEFYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN 70
ER Q+ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 71 NDLRHILI-ATENKSILVVEDI 91
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 14 ERFLQRKEFYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN 70
ER Q+ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 71 NDLRHILI-ATENKSILVVEDI 91
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 14 ERFLQRKEFYRRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN 70
ER Q+ Y KA K LL+GPPG GK++L +A+ L ++ +
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77
Query: 71 NDLRHILI-ATENKSILVVEDI 91
DL IL + E IL +++I
Sbjct: 78 GDLAAILANSLEEGDILFIDEI 99
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI--- 91
LL GPPG GK + +A K + + L N + E K L D+
Sbjct: 24 LLLGPPGAGKGTQAVKLAE--KLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 92 DCCIEL-QDRLSRARAANPDFLIAGY----EQQKQYHITLSGLLNFIDGLWSSCGDERII 146
D EL DRL+ AAN F++ GY EQ K H L ID + E ++
Sbjct: 82 DLTNELVDDRLNNPDAAN-GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 140
Query: 147 IFTTNHKERLD 157
+ + R D
Sbjct: 141 LERLKGRGRAD 151
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDI--- 91
LL GPPG GK + +A K + + L N + E K L D+
Sbjct: 4 LLLGPPGAGKGTQAVKLAE--KLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 92 DCCIEL-QDRLSRARAANPDFLIAGY----EQQKQYHITLSGLLNFIDGLWSSCGDERII 146
D EL DRL+ AAN F++ GY EQ K H L ID + E ++
Sbjct: 62 DLTNELVDDRLNNPDAAN-GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 120
Query: 147 IFTTNHKERLD 157
+ + R D
Sbjct: 121 LERLKGRGRAD 131
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV 59
K R LL GPPGTGK++L A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV 59
K R LL GPPGTGK++L A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 31 KRGYLLYGPPGTGKSSLI-AAMANYLKFDVYDLELSNLLGNNDLRHILIA 79
KRG +L GPPG+GK+ ++ A+ N +DV + S + HIL A
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK---DTTTEHILSA 1094
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 19 RKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67
+K ++ GK R +LYGPPG GK++ +A L +D+ + S++
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 31 KRGYLLYGPPGTGKSSLI-AAMANYLKFDVYDLELSNLLGNNDLRHILIA 79
KRG +L GPPG+GK+ ++ A+ N +DV + S + HIL A
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSK---DTTTEHILSA 1313
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 25 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD----------VYDLELSN 66
R GK R L+ G PGTGK+++ MA L D ++ LE+S
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSK 115
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 35 LLYGPPGTGKSSLIAAMANYL 55
L YGPPGTGK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61
A KR L GP G GKS++ +A L + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61
KR LL G PGTGKS L AMA L + +
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 35 LLYGPPGTGKSSLIAAMANYL 55
L+ GP G+GKS+ IA+M +Y+
Sbjct: 140 LVTGPTGSGKSTTIASMIDYI 160
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 34 YLLYGPPGTGKSSLIAAMANY 54
++L G GTGK++ +A MANY
Sbjct: 108 FMLVGVNGTGKTTSLAKMANY 128
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFD 58
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFD 58
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 35 LLYGPPGTGKSSLIAAMANYLKFD 58
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 31 KRGYLLYGPPGTGKSSLIAAMANYLKF-----DVYDLELSNLLG---NNDLRHILIATE- 81
K LL GP G+GK+ + +A +L D L + +G N L +L A++
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 82 -----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQ 118
K I+ +++ID RLS R+ D G +Q
Sbjct: 132 NVQKAQKGIVFIDEIDKI----SRLSENRSITRDVSGEGVQQ 169
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 130
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 130
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 130
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 127
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 79 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 128
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 49 AAMANYLK-FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQD 99
A+Y++ F +D E + +LRH+L A + L ED+D I+L D
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGER--LSDEDVDEIIKLTD 127
>pdb|3E5L|A Chain A, Crystal Structure Of Cyp105p1 H72a Mutant
Length = 403
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADV 213
E LD R G +D+ ++ PS M+ S+ G V +E+ + D+
Sbjct: 124 EHLDAIEARGGPVDLVKTFANAVPS---MVISDLFG-------VPVER-----RAEFQDI 168
Query: 214 AEQLMR-------NEAPEFALSGLIEFLESKKRANDGSE 245
AE +MR EA L GL+ L ++RAN G +
Sbjct: 169 AEAMMRVDQDAAATEAAGMRLGGLLYQLVQERRANPGDD 207
>pdb|3E5J|A Chain A, Crystal Structure Of Cyp105p1 Wild-type Ligand-free Form
pdb|3E5K|A Chain A, Crystal Structure Of Cyp105p1 Wild-Type 4-Phenylimidazole
Complex
Length = 403
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADV 213
E LD R G +D+ ++ PS M+ S+ G V +E+ + D+
Sbjct: 124 EHLDAIEARGGPVDLVKTFANAVPS---MVISDLFG-------VPVER-----RAEFQDI 168
Query: 214 AEQLMR-------NEAPEFALSGLIEFLESKKRANDGSE 245
AE +MR EA L GL+ L ++RAN G +
Sbjct: 169 AEAMMRVDQDAAATEAAGMRLGGLLYQLVQERRANPGDD 207
>pdb|3ABA|A Chain A, Crystal Structure Of Cyp105p1 In Complex With Filipin I
Length = 403
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 22/99 (22%)
Query: 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADV 213
E LD R G +D+ ++ PS M+ S+ G V +E+ + D+
Sbjct: 124 EHLDAIEARGGPVDLVKTFANAVPS---MVISDLFG-------VPVER-----RAEFQDI 168
Query: 214 AEQLMR-------NEAPEFALSGLIEFLESKKRANDGSE 245
AE +MR EA L GL+ L ++RAN G +
Sbjct: 169 AEAMMRVDQDAAATEAAGMRLGGLLYQLVQERRANPGDD 207
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 14 ERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 55
ERF+ E GK K G L+G G GK+ L+AA+AN L
Sbjct: 42 ERFVAEYE----PGKKMK-GLYLHGSFGVGKTYLLAAIANEL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,378,393
Number of Sequences: 62578
Number of extensions: 291196
Number of successful extensions: 1211
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 78
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)