BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024550
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 32/247 (12%)
Query: 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60
++ ++KKMI DD+ FL+ ++Y G ++RGYLLYGPPG+GK+S + A+A L +D+
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDIC 271
Query: 61 DLELSNL-LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQ 119
L L+ L ++ L H+L K+++++ED+D + R R+ F
Sbjct: 272 VLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQ-----GRERSGEVGF-------- 318
Query: 120 KQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179
++T SGLLN +DG+ SS DERII TTNH E+LDPAL+RPGR+D+ + + TP
Sbjct: 319 -HANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQ 375
Query: 180 FKMLASNYLG-------------IAEHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFA 226
+ + + + G ++ ++ L K +PAD + M E P+
Sbjct: 376 VREMFTRFYGHSPEMADDLSDIVCPKNTSMASLQGLFVMNKSSPADAVD--MAKELPDNP 433
Query: 227 LSGLIEF 233
S F
Sbjct: 434 PSTPFSF 440
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 112/190 (58%), Gaps = 16/190 (8%)
Query: 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60
+D ++I+ D+++FL ++Y G ++RGYLLYGPPGTGKSS I A+A L+ +
Sbjct: 211 LDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSIC 270
Query: 61 DLELSN-LLGNNDLRHILIATENKSILVVEDIDCCIEL--QDRLSRARAANPDFLIAGYE 117
L L+ + + L +L +SI+++EDID I+ D +++ +AN + +G
Sbjct: 271 ILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGL 330
Query: 118 QQKQYH-----------ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRM 166
Q + Y+ +T SGLLN +DG+ +S G RI+ TTNH E+LD L+RPGR+
Sbjct: 331 QYQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRV 388
Query: 167 DMHINMSHCT 176
D+ I + C+
Sbjct: 389 DLQIEIGLCS 398
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 17/178 (9%)
Query: 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60
+D +K+ I+DD+ F++ ++Y G ++RGYLLYGPPG+GK+S I A+A L +++
Sbjct: 230 LDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNIC 289
Query: 61 DLELS-NLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQ 119
L LS N L ++ L H++ +SIL++EDID + + EQ
Sbjct: 290 ILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTG--------------EQG 335
Query: 120 KQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTP 177
+T SGLLN +DG+ SS +E I TTNH E+LD A++RPGR+D + + + TP
Sbjct: 336 FHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNATP 391
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 12/169 (7%)
Query: 9 IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL- 67
I+DD++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L + + + LS+
Sbjct: 201 IVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRS 260
Query: 68 LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
L ++ L H+L +SI+++ED+D ++ L NP Q +T S
Sbjct: 261 LSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLP---TENP------LAYQGMGRLTFS 311
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176
GLLN +DG+ SS + RI+ TTN ERLDPAL+RPGR+D+ + HC+
Sbjct: 312 GLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCS 358
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 30/240 (12%)
Query: 9 IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-YDLELSNL 67
I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L+ + +
Sbjct: 201 IVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSS 260
Query: 68 LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAA-NPDFLIAGYEQQKQYHITL 126
L ++ L H+L +S++++ED+D LSR AA NP + Q +T
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAF-----LSRDLAAENP------IKYQGLGRLTF 309
Query: 127 SGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGF-KMLAS 185
SGLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+DM + HC+ +M
Sbjct: 310 SGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMFQR 367
Query: 186 NYLG----IAEHPLFVEIEKLIATAKVTPADVAEQLM--RNEAPEFALSGLIEFLESKKR 239
Y G +AE+ F + L AT +++PA V M +N+ +G I+ ES +R
Sbjct: 368 FYPGQATSLAEN--FAD-RVLQATTQISPAQVQGYFMLYKNDP-----AGAIQNAESLRR 419
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 13/169 (7%)
Query: 9 IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-YDLELSNL 67
I+ D++ F++ ++Y G ++RGYLLYGPPG GKSS I A+A L++ + +
Sbjct: 201 IVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSS 260
Query: 68 LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
L ++ L H+L +SI+++ED+D +D NP Q +T S
Sbjct: 261 LSDDRLNHLLSVAPQQSIILLEDVDAAFVSRD----LNKQNPT------AYQGMGRLTFS 310
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176
GLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+D+ + HCT
Sbjct: 311 GLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 37/224 (16%)
Query: 9 IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-YDLELSNL 67
I+ D++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L+ + +
Sbjct: 201 IVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 68 LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAA-NPDFLIAGYEQQKQYHITL 126
L ++ L H+L +S++++ED+D LSR A NP + Q +T
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAF-----LSRDLAVENP------VKYQGLGRLTF 309
Query: 127 SGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT---------- 176
SGLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+D+ + +C+
Sbjct: 310 SGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQR 367
Query: 177 --PSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLM 218
P LA N+ AEH L AT +++PA V M
Sbjct: 368 FYPGQAPSLAENF---AEH-------VLRATNQISPAQVQGYFM 401
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63
D+K +++D++ F+ + +YR G ++RGYLLYG PG GKSSLI A+A L D+ +
Sbjct: 194 DLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVS 253
Query: 64 LSNL-LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQY 122
LS+ + + + H+L KSIL++EDID ++ N D
Sbjct: 254 LSSKDIDDKQINHLLNNAPPKSILLIEDIDAAF-------KSHRDNVDSNNN--NSNNNN 304
Query: 123 HITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKM 182
+T SGLLN +DG+ S G RI+ TTN E LD AL+R GR+D+ I +S+ T S
Sbjct: 305 SLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQAAQ 362
Query: 183 LASNY 187
L +++
Sbjct: 363 LFTHF 367
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 37/224 (16%)
Query: 9 IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-YDLELSNL 67
I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L+ + +
Sbjct: 201 IVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 68 LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAA-NPDFLIAGYEQQKQYHITL 126
L ++ L H+L +S++++ED+D LSR A NP + Q +T
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAF-----LSRDLAVENP------IKYQGLGRLTF 309
Query: 127 SGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT---------- 176
SGLLN +DG+ S+ + RI+ TTN+ +RLDPAL+RPGR+D+ + +C+
Sbjct: 310 SGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQR 367
Query: 177 --PSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLM 218
P LA N+ AEH L AT++++PA V M
Sbjct: 368 FYPGQAPSLAENF---AEH-------VLKATSEISPAQVQGYFM 401
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 93/157 (59%), Gaps = 16/157 (10%)
Query: 47 LIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENK-SILVVEDIDCCIE--------- 96
+I A++ + K ++ L L+N+ +N+L ++L A K +ILV+EDIDC E
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 97 --LQDRLSRARAANPDFLIAGY--EQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH 152
+ ++++ ++ + ++A + +K +TLSG+LN +DG+++S G RI+I TTNH
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 153 KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189
E LDPAL+R GR+DM I S+C + N+ G
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 30/246 (12%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ E Y+ +G +G LL GPPGTGK+ L A+A + L S+ + G
Sbjct: 269 FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 328
Query: 70 NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGL 129
+R + N++ ++ I+ D L ++R+ + ++ G+++++Q TL+ L
Sbjct: 329 AARVRDMFTQAVNRAPCII-----FIDELDALGKSRSGS---VVGGHDEREQ---TLNAL 377
Query: 130 LNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189
L +DG S+ G I++ TN E LDPALLRPGR D H+ + +G + + + ++
Sbjct: 378 LVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRHVLVDRPDVAGREEILAVHVK 435
Query: 190 IAEHPLFVEIEKLIA-TAKVTPADVAEQL-------MRNEAPEFALSGLIEFLESKKRAN 241
+ VE++ + + T+ AD+A + RN P A+ EF E+ +R
Sbjct: 436 NVKLDETVELKGIASITSGFVGADLANLVNEAALLAARNGKPAVAME---EFNEAVERVT 492
Query: 242 DGSEAK 247
G E K
Sbjct: 493 AGLEKK 498
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 19/161 (11%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ E Y+++G +G LL GPPGTGK+ L A+A + L S+ +G
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 70 NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGL 129
+R + E K+ ++ I+ D L ++R A ++ G+++++Q TL+ L
Sbjct: 300 AARVRDMFQQAEAKAPCII-----FIDELDALGKSRGAG---IMGGHDEREQ---TLNAL 348
Query: 130 LNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
L +DG S+ G I++ TN E LDPALLRPGR D H+
Sbjct: 349 LVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 30/225 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------G 69
FL+ E ++++G +G LL GPPGTGK+ L A+A + + S + G
Sbjct: 215 FLKTPEKFQKLGGQVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQMFVGVG 274
Query: 70 NNDLRHILIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + ++ SI+ +++ID + R R A L G+++++Q TL+
Sbjct: 275 ASRVRDLFKTAKEQSPSIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ---TLN 321
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNY 187
+L +DG + I+I TN + LDPALLRPGR D H+ + T G + + +
Sbjct: 322 QILGEMDGFGGAQA--VIVIAATNRPDVLDPALLRPGRFDRHVTVGRPTMKGREEIFKVH 379
Query: 188 LGIAEHPLF--VEIEKLIA-TAKVTPADVAEQLMRNEAPEFALSG 229
+ + PL V++ +L A T +T AD+ M NEA +A G
Sbjct: 380 --VRDVPLGDDVDLHRLAAGTVGLTGADIRN--MVNEAALWAARG 420
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL- 68
+ +L +L+ + + RVG RG LL GPPGTGK+ L A+A + Y + S +
Sbjct: 188 VQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEAGVNFYPMSASEFIE 247
Query: 69 -----GNNDLRHIL-IATENK-SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
G + +R + IA EN SI+ ++++D + R R A G+++++Q
Sbjct: 248 VFVGVGASRVRQLFKIAKENSPSIIFIDELDS-------VGRTRGAG---YGGGHDEREQ 297
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
TL+ +L +DG + D I++ TN + LDPAL+RPGR D H+ +
Sbjct: 298 ---TLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRPGRFDRHVTL 343
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+++ FLQ Y+ +G +G LLYGPPGTGK+ L A+A + + S+
Sbjct: 177 EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMF 236
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + S I+ V++ID + R R A L G+++++Q
Sbjct: 237 VGVGASRVRDLFEQAKQNSPCIIFVDEIDA-------VGRQRGAG---LGGGHDEREQ-- 284
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ LL +DG G I+I TN + LDPALLRPGR D I +S+ +G + +
Sbjct: 285 -TLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAV 341
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+++ FLQ Y+ +G +G LLYGPPGTGK+ L A+A + + S+
Sbjct: 177 EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMF 236
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + S I+ V++ID + R R A L G+++++Q
Sbjct: 237 VGVGASRVRDLFEQAKQNSPCIIFVDEIDA-------VGRQRGAG---LGGGHDEREQ-- 284
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ LL +DG G I+I TN + LDPALLRPGR D I +S+ +G + +
Sbjct: 285 -TLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAV 341
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+++ FLQ Y+ +G +G LLYGPPGTGK+ L A+A + + S+
Sbjct: 177 EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMF 236
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + S I+ V++ID + R R A L G+++++Q
Sbjct: 237 VGVGASRVRDLFEQAKQNSPCIIFVDEIDA-------VGRQRGAG---LGGGHDEREQ-- 284
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ LL +DG G I+I TN + LDPALLRPGR D I +S+ +G + +
Sbjct: 285 -TLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAV 341
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 19/176 (10%)
Query: 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62
D K + ++ FL+ + Y+R+G +G LL G PGTGK+ L A+A + +
Sbjct: 245 IDEAKEELSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSM 304
Query: 63 ELSNLL------GNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGY 116
S+ + G +R + E K+ ++ I+ D L + RA N + G
Sbjct: 305 SGSDFVEMFVGVGAARVRDLFKQAETKAPCII-----FIDELDALGKTRALNA---VGGN 356
Query: 117 EQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
E+++Q TL+ LL +DG S+ G II+ TN E LDPALLRPGR D H+ +
Sbjct: 357 EEREQ---TLNQLLVEMDGFDSNKG--VIIMAATNRPEILDPALLRPGRFDRHVAL 407
>sp|Q6M2F0|FTSH_CORGL ATP-dependent zinc metalloprotease FtsH OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=ftsH PE=3 SV=1
Length = 853
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 23/173 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ +++ FL+ Y +G RG LLYGPPGTGK+ L A+A Y + S+
Sbjct: 177 LHEIKDFLEDPTRYEALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVE 236
Query: 68 ----LGNNDLRHIL-IATENKS-ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G + +R + A EN I+ V++ID + RAR + + G+++++Q
Sbjct: 237 MFVGVGASRVRDLFKQAKENSPCIIFVDEIDA-------VGRARGSG---MGGGHDEREQ 286
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174
TL+ LL +DG G I++ TN + LDPALLRPGR D I +++
Sbjct: 287 ---TLNQLLVEMDGFGDRQG--VILMAATNRPDVLDPALLRPGRFDRQIPVTN 334
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ ++ FL+ E YRR+G +G LL GPPGTGK+ L A A + L S
Sbjct: 218 LQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLSGSEFVE 277
Query: 68 ----LGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G +R + K+ +V I+ D L ++R A ++ G+++++Q
Sbjct: 278 MFVGVGAARVRDLFAQATQKAPCIV-----FIDELDALGKSRNAG---IMGGHDEREQ-- 327
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
TL+ LL +DG + G II+ TN E LDPALLRPGR D +
Sbjct: 328 -TLNQLLAEMDGFDARAG--LIIMGATNRPEILDPALLRPGRFDRQV 371
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+D++++FL Y+ VG +G LLYGPPGTGK+ L A+A Y + S+
Sbjct: 189 LDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVE 248
Query: 68 ----LGNNDLRHIL-IATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G + +R + A EN +I+ +++ID + R R A + G+++++Q
Sbjct: 249 MFVGVGASRVRDLFNTAKENAPAIIFIDEIDA-------VGRHRGAG---MGGGHDEREQ 298
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
TL+ +L +DG + I+I TN + LDPALLRPGR D I +
Sbjct: 299 ---TLNQMLVEMDGFEEN--QNVILIAATNRVDILDPALLRPGRFDRQIGV 344
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 23/171 (13%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+++ FLQ Y+ +G +G LLYGPPGTGK+ L A+A + + S+
Sbjct: 177 EIKDFLQNPCRYQTLGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMF 236
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + S I+ V++ID + R R L G+++++Q
Sbjct: 237 VGVGASRVRDLFDQAKQNSPCIIFVDEIDA-------VGRQRGTG---LGGGHDEREQ-- 284
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174
TL+ LL +DG G I+I TN + LDPALLRPGR D I +S+
Sbjct: 285 -TLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSN 332
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63
+ K+ IM+ +FL+ +FY R+G RG +L GPPGTGK+ L A A +
Sbjct: 303 EAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVS 361
Query: 64 LSNLL------GNNDLRHILIATENKS---ILVVEDIDCCIELQDRLSRARAANPDFLIA 114
S L G + +R L AT K+ I+ +++ID + +AR F
Sbjct: 362 GSEFLEMFVGVGPSRVRD-LFATARKNAPCIIFIDEIDA-------IGKARGRGGQF--- 410
Query: 115 GYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT-TNHKERLDPALLRPGRMDMHINM 172
G +++ TL+ LL +DG SS E I++F TN + LDPALLRPGR D I +
Sbjct: 411 GSNDERES--TLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRFDRQITI 464
>sp|Q1AV13|FTSH_RUBXD ATP-dependent zinc metalloprotease FtsH OS=Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129) GN=ftsH PE=3 SV=1
Length = 651
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 40/270 (14%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ +++ FL+ + ++++G +G LL GPPGTGK+ L A+A + + S+
Sbjct: 201 LTEIKEFLENPQKFQKLGARIPKGALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 260
Query: 68 ----LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G + +R + + S I+ V++ID + R R A L G+++++Q
Sbjct: 261 MFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA-------VGRQRGAG---LGGGHDEREQ 310
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT-PSGF 180
TL+ LL +DG S G I++ TN + LDPALLRPGR D I + P
Sbjct: 311 ---TLNQLLVEMDGFDSKSGI--IMLAATNRPDILDPALLRPGRFDRQIVVDRPDLPGRI 365
Query: 181 KMLASNYLGIAEHPLF--VEIEKLI-ATAKVTPADVAEQLMRNEAPEFALSGLIEFLESK 237
K+L + G PL V+IE + T T AD+A + NEA A E +E
Sbjct: 366 KILKVHTRG---KPLGEDVDIETIARGTPGFTGADLAN--LVNEAALLAARHNKEQIEM- 419
Query: 238 KRANDGSEAKEAEERAVQA-EKKVLEISEE 266
+E +EA +R + E+K ISE+
Sbjct: 420 ------AEMEEAIDRVIAGPERKTRLISEK 443
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 22/178 (12%)
Query: 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62
+D K + ++ FL+ E YRR G A RG L+ GPPGTGK+ + A+A +
Sbjct: 184 YDGVKAEIAEVVDFLRSPERYRRAGAAIPRGVLMVGPPGTGKTLMARAVAGEAGVPFLSV 243
Query: 63 ELSNL------LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIA 114
S+ +G + +R + + I+ V++ID + R A ++A
Sbjct: 244 TGSSFVEMFVGVGASRVRDLFEEARKHAPCIVFVDEIDAIGQ--------RRAGAGTIVA 295
Query: 115 GYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
E+++ TL+ LL +DG + G +++ TN E LDPALLRPGR D + +
Sbjct: 296 NDEREQ----TLNQLLAEMDGFEPAQG--VVVLAATNRPEVLDPALLRPGRFDRQVTV 347
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62
D K ++++ +FL+ ++R+G +G LL G PGTGK+ L A+A + +
Sbjct: 192 IDEAKGELEEIVQFLKDPGKFQRLGGRIPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSM 251
Query: 63 ELSNLL------GNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGY 116
S + G +R + ++ + ++ I+ D L +AR NP I G+
Sbjct: 252 SGSEFVEMFVGVGAARVRDLFGQAKDHAPCII-----FIDELDALGKARGLNP---IGGH 303
Query: 117 EQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176
++++Q TL+ LL +DG G II+ TN E LDPALLRPGR D H+ +
Sbjct: 304 DEREQ---TLNQLLVEMDGFDPRSG--VIIMAATNRPEILDPALLRPGRFDRHVAIDKPD 358
Query: 177 PSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL--MRNEA 222
G + + + + E L E++ L A +TP V L + NEA
Sbjct: 359 IRGREAILRVH--VKEVKLGSEVD-LKKIAGMTPGFVGADLANLVNEA 403
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 34/209 (16%)
Query: 13 LERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL---- 68
+E+ L+ E + +VG +G LLYGPPGTGK+ L A+AN+ L L+
Sbjct: 195 VEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFI 254
Query: 69 --GNNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI 124
G +R + K SI+ +++ID R R A +G ++
Sbjct: 255 GEGARLVRELFELAREKAPSIIFIDEIDAI-----GARRMRDAT-----SG---DREVQR 301
Query: 125 TLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG----F 180
TL+ LL +DG D+ +I TN K+ LDPALLRPGR D HI + G F
Sbjct: 302 TLTQLLAEMDGF--DPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIF 359
Query: 181 KMLASNYLGIAEHPLFVEIEKLIATAKVT 209
K+ + + +AE V+++KL AK+T
Sbjct: 360 KIHTRD-MNLAED---VDLQKL---AKIT 381
>sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ftsH PE=3 SV=1
Length = 644
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ-- 273
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 274 -TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330
Query: 184 ASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEF 233
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 331 LKVHM--RRVPLATDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEF 385
Query: 234 LESKKRANDGSEAK 247
++K + G+E +
Sbjct: 386 EKAKDKIMMGAERR 399
>sp|P63344|FTSH_SALTI ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhi GN=ftsH
PE=3 SV=1
Length = 644
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ-- 273
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 274 -TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330
Query: 184 ASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEF 233
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 331 LKVHM--RRVPLATDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEF 385
Query: 234 LESKKRANDGSEAK 247
++K + G+E +
Sbjct: 386 EKAKDKIMMGAERR 399
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 21/163 (12%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ + Y +G +G LL GPPGTGK+ L A+A + + S+ LG
Sbjct: 194 FLKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLG 253
Query: 70 NNDLRHI--LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + + E SI+ +++ID + ++RAA +I+G ++++Q TL+
Sbjct: 254 ASRVRDLFDIAKKEAPSIIFIDEIDA-------IGKSRAAGG--MISGNDEREQ---TLN 301
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S I++ TN E LDPALLRPGR D +
Sbjct: 302 QLLAEMDGFGSENA-PVIVLAATNRPEILDPALLRPGRFDRQV 343
>sp|Q9ZM66|FTSH_HELPJ ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain J99) GN=ftsH PE=3 SV=1
Length = 632
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 128/261 (49%), Gaps = 36/261 (13%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ E Y +G +G LL GPPGTGK+ L A+A + + S+ LG
Sbjct: 188 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 247
Query: 70 NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + + + SI+ +++ID + ++RAA +I+G ++++Q TL+
Sbjct: 248 ASRVRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGG--MISGNDEREQ---TLN 295
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG-FKMLASN 186
LL +DG S I++ TN E LDPAL+RPGR D + + +G ++L +
Sbjct: 296 QLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH 354
Query: 187 YLGI--AEHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLESKKRANDGS 244
G+ A E+ KL TA + AD+A + NEA L+G E K++
Sbjct: 355 IKGVKLANDVNLQEVAKL--TAGLAGADLANII--NEAA--LLAGRNNQKEVKQQ----- 403
Query: 245 EAKEAEERAVQA-EKKVLEIS 264
KEA ER + EKK IS
Sbjct: 404 HLKEAVERGIAGLEKKSRRIS 424
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 74.3 bits (181), Expect = 9e-13, Method: Composition-based stats.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 23/167 (13%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+++ FLQ Y+ +G RG LLYGPPGTGK+ L A+A + + S+
Sbjct: 181 EIKDFLQNPARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMF 240
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + S I+ V++ID + R R A L G+++++Q
Sbjct: 241 VGVGASRVRDMFEQAKQNSPCIIFVDEIDA-------VGRQRGAG---LGGGHDEREQ-- 288
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
TL+ LL +DG G I+I TN + LDPALLRPGR D I
Sbjct: 289 -TLNQLLVEMDGFGDRTG--IILIAATNRPDILDPALLRPGRFDRQI 332
>sp|Q3JMH0|FTSH_BURP1 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia
pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2
Length = 666
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 28/270 (10%)
Query: 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62
D K + + FL+ Y+R+G +G L+ G PGTGK+ L A+A +
Sbjct: 175 IDEAKAELQQIVAFLRAPARYQRLGGKIPKGVLIVGAPGTGKTLLAKAVAGEAGVPFFST 234
Query: 63 ELSNLL------GNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGY 116
S+ + G +R + + K+ ++ I+ D L + R A L +G
Sbjct: 235 SGSSFVEMFVGVGAARVRDLFEQAQQKAPCII-----FIDELDALGKVRGAG---LASGN 286
Query: 117 EQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176
++++Q TL+ LL +DG ++ G I++ TN E LDPALLRPGR D HI +
Sbjct: 287 DEREQ---TLNQLLVEMDGFQANSG--VILMAATNRPEILDPALLRPGRFDRHIAIDRPD 341
Query: 177 PSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLES 236
+G + + S ++ + V++ +L A TP V L N E AL E
Sbjct: 342 LTGRRQILSVHVKHVKLGPDVDLGEL---ASRTPGFVGADLA-NIVNEAALHA----AEL 393
Query: 237 KKRANDGSEAKEAEERAVQA-EKKVLEISE 265
K A D S+ EA +RA+ E+K +SE
Sbjct: 394 DKPAIDMSDFDEAIDRAMTGMERKSRVMSE 423
>sp|Q8X9L0|FTSH_ECO57 ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli O157:H7
GN=ftsH PE=3 SV=1
Length = 644
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ-- 273
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 274 -TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330
Query: 184 ASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEF 233
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 331 LKVHM--RRVPLAPDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEF 385
Query: 234 LESKKRANDGSEAK 247
++K + G+E +
Sbjct: 386 EKAKDKIMMGAERR 399
>sp|D1C4U5|FTSH3_SPHTD ATP-dependent zinc metalloprotease FtsH 3 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH3 PE=3
SV=1
Length = 489
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ E +RR+G RG LL GPPGTGK+ L A+A + + S +G
Sbjct: 73 FLRDPERFRRMGARMPRGVLLAGPPGTGKTLLARAVAGEAGVPFFAMSASQFVEVYVGVG 132
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + A S I+ +++ID + R R + + ++Y TL+
Sbjct: 133 AKRVRDLFAAARKASPAIVFIDEIDA-------IGRRRGDS--------QSHQEYEQTLN 177
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMS 173
+L +DG ++I TN + LDPALLRPGR D + +S
Sbjct: 178 QVLVELDGFHPR--QAVVVIAATNRSDILDPALLRPGRFDRRVELS 221
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 3 FDMKKM-IMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61
DM+K I + +E L + + Y+++G RG LLYGPPGTGK+ L+ A+AN
Sbjct: 171 LDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIR 230
Query: 62 LELSNLL------GNNDLRHIL-IATENK-SILVVEDIDCCIELQDRLSRARAANPDFLI 113
+ S + G +R + +A EN +I+ +++ID R A+
Sbjct: 231 VNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIA--TKRFDAQTGAD----- 283
Query: 114 AGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
++ L LLN +DG S + +I TN + LDPALLRPGR+D I
Sbjct: 284 ------REVQRILLELLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKI 332
>sp|P0AAI4|FTSH_SHIFL ATP-dependent zinc metalloprotease FtsH OS=Shigella flexneri
GN=ftsH PE=3 SV=1
Length = 644
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ-- 273
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 274 -TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330
Query: 184 ASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEF 233
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 331 LKVHM--RRVPLAPDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEF 385
Query: 234 LESKKRANDGSEAK 247
++K + G+E +
Sbjct: 386 EKAKDKIMMGAERR 399
>sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain
K12) GN=ftsH PE=1 SV=1
Length = 644
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---- 67
+L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 166 ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225
Query: 68 --LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ-- 273
Query: 124 ITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183
TL+ +L +DG + G I+I TN + LDPALLRPGR D + + G + +
Sbjct: 274 -TLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 330
Query: 184 ASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFALSG------LIEF 233
++ PL +I+ I A+ TP AD+A + NEA FA G ++EF
Sbjct: 331 LKVHM--RRVPLAPDIDAAI-IARGTPGFSGADLAN--LVNEAALFAARGNKRVVSMVEF 385
Query: 234 LESKKRANDGSEAK 247
++K + G+E +
Sbjct: 386 EKAKDKIMMGAERR 399
>sp|P46508|YME1_SCHMA ATP-dependent zinc metalloprotease YME1 homolog OS=Schistosoma
mansoni PE=2 SV=1
Length = 662
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 27/227 (11%)
Query: 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-------YLK 56
++KK ++D +E FL+ E + ++G +G LL GPPG GK+ L A++ Y
Sbjct: 173 EVKKELVDVVE-FLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYAS 231
Query: 57 FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGY 116
+D E+ LG + +R + + S +V I+ D + R +P A
Sbjct: 232 GSSFD-EVLVGLGASRIRQLFTTAKQNSPCLV-----FIDEIDSVGGNRTFSPHHPFANQ 285
Query: 117 EQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176
T++ LL +DG S G I++ TN E LD ALLRPGR D+ I++S T
Sbjct: 286 --------TINQLLAEMDGFQSKEG--IIVLGATNQAEVLDKALLRPGRFDVQIHVSPPT 335
Query: 177 PSGFKMLASNYLGIAEHPLFVEIEKLI-ATAKVTPADVAEQLMRNEA 222
G L + YL + ++IEKL T T AD+ Q + N+A
Sbjct: 336 YEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADI--QNLVNQA 380
>sp|A6TWP7|FTSH2_ALKMQ ATP-dependent zinc metalloprotease FtsH 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH2 PE=3 SV=1
Length = 689
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 46/272 (16%)
Query: 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62
D +K +++L FL+ + Y +G +G L+ GPPGTGK+ L A+A + +
Sbjct: 170 LDEEKAEVEELVDFLKNPKKYIELGARIPKGILMIGPPGTGKTYLTKAVAGEAGVPFFSI 229
Query: 63 ELSNL------LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIA 114
S+ +G + +R + + + I+ +++ID + R R A L
Sbjct: 230 SGSDFVEMFVGVGASRVRDLFEQAKKSAPCIIFIDEIDA-------VGRKRGAG---LGG 279
Query: 115 GYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174
G+++++Q TL+ LL +DG + G II+ TN + LDPALLRPGR D + +
Sbjct: 280 GHDEREQ---TLNQLLVEMDGFGINEG--IIIVAATNRPDILDPALLRPGRFDRQVMVGA 334
Query: 175 CTPSG-------------------FKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAE 215
G K+LA G +IE L+ A + A E
Sbjct: 335 PDIKGREQILQVHAKGKPLDEDVNLKVLARRTPGFTP----ADIENLMNEAALLTARKNE 390
Query: 216 QLMRNEAPEFALSGLIEFLESKKRANDGSEAK 247
+ ++ E E A++ +I LE K R E K
Sbjct: 391 KKIKMETVEEAITKVIAGLEKKSRVISEKERK 422
>sp|Q0TTK8|FTSH_CLOP1 ATP-dependent zinc metalloprotease FtsH OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=ftsH PE=3
SV=1
Length = 717
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL Y +G +G LL GPPGTGK+ L A+A K + + S+ +G
Sbjct: 184 FLHDTRKYVEIGAKLPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSMSGSDFVEMFVGMG 243
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+R + E K+ I+ +++ID + ++R D I G ++++Q TL+
Sbjct: 244 AARVRDLFKQAEEKAPCIVFIDEIDA-------IGKSR----DGAIQGNDEREQ---TLN 289
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG SS G +I+ TN E LD ALLRPGR D I
Sbjct: 290 QLLTEMDGFDSSKG--VVILAATNRPEVLDKALLRPGRFDRRI 330
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 31/170 (18%)
Query: 12 DLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNL- 67
D+ +L+ E +RR+G RG LL GPPGTGK+ L A+A + F V E L
Sbjct: 174 DIVDYLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGEARASFFSVSGSEFVELY 233
Query: 68 --LGNNDLRHIL-IATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYH 123
+G + +R + A EN +I+ +++ID + R+ EQ +Y
Sbjct: 234 VGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRM---------------EQSSEYD 278
Query: 124 ITLSGLLNFIDGLWSSCGDER---IIIFTTNHKERLDPALLRPGRMDMHI 170
TL+ +L +DG +ER +++ TN + LDPALLRPGR D +
Sbjct: 279 QTLNQILVEMDGF-----EERTTVVVVAATNRVDILDPALLRPGRFDRKV 323
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 23/173 (13%)
Query: 6 KKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65
K+ I + +E L + + YR++G +G LLYGPPGTGK+ L+ A+AN+ K + S
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202
Query: 66 NLL------GNNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYE 117
+ G +R + K SI+ ++++D R + +A+
Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSI--ATKRFDASTSAD--------- 251
Query: 118 QQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
++ L LLN +DG + + +I TN + +DPALLRPGR+D I
Sbjct: 252 --REVQRVLIELLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKI 300
>sp|B3DY14|FTSH2_METI4 ATP-dependent zinc metalloprotease FtsH 2 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH2 PE=3 SV=1
Length = 641
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 23/172 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL- 68
+ +L FL+ + ++++G +G L+ GPPGTGK+ L A+A + + S+ +
Sbjct: 165 VQELVEFLKDPKKFQKLGGRIPKGVLMVGPPGTGKTLLAKAIAGEADVPFFSISGSDFVE 224
Query: 69 -----GNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
G + +R + + I+ +++ID + RAR L G+++++Q
Sbjct: 225 MFVGVGASRVRDMFEQARRHAPCIVFIDEIDA-------VGRARGTG---LGGGHDEREQ 274
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMS 173
TL+ LL +DG+ S G I+I TN K+ LDPALLRPGR D + ++
Sbjct: 275 ---TLNALLVEMDGIESQEG--VIVIAATNRKDVLDPALLRPGRFDREVRVN 321
>sp|Q8K9G8|FTSH_BUCAP ATP-dependent zinc metalloprotease FtsH OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=ftsH PE=3 SV=1
Length = 613
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ +L +L+ ++++G +G L+ GPPGTGK+ L A+A K + + S+
Sbjct: 164 VSELVEYLKEPSRFQKLGGKIPKGILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223
Query: 68 ----LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G + +R + + I+ +++ID + R R A L G+++++Q
Sbjct: 224 MFVGVGASRVRDMFEHARKSAPCIIFIDEIDA-------VGRQRGAG---LGGGHDEREQ 273
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFK 181
TL+ +L +DG + G I+I TN + LDPALLRPGR D + ++ G K
Sbjct: 274 ---TLNQMLVEMDGFDGNEG--VILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRK 328
Query: 182 MLASNYLGIAEHPLFVEIEKLIATAKVTP----ADVAEQLMRNEAPEFA------LSGLI 231
+ ++ + PL +++ +I A+ TP AD+A + NEA FA + +I
Sbjct: 329 QILKVHM--RKVPLSEDVDPMI-IARGTPGFSGADLAN--LVNEAALFAARFNNRVVSMI 383
Query: 232 EFLESKKRANDGSEAK 247
F ++K + GSE +
Sbjct: 384 HFEKAKDKIMMGSERR 399
>sp|P71408|FTSH_HELPY ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=ftsH PE=1 SV=2
Length = 632
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 21/163 (12%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ E Y +G +G LL GPPGTGK+ L A+A + + S+ LG
Sbjct: 188 FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG 247
Query: 70 NNDLRHILIATENK--SILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + + + SI+ +++ID + ++RAA +++G ++++Q TL+
Sbjct: 248 ASRVRDLFETAKKQAPSIIFIDEIDA-------IGKSRAAGG--VVSGNDEREQ---TLN 295
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S I++ TN E LDPAL+RPGR D +
Sbjct: 296 QLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 337
>sp|Q3A579|FTSH_PELCD ATP-dependent zinc metalloprotease FtsH OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=ftsH PE=3 SV=1
Length = 646
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 24/177 (13%)
Query: 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63
+ K+ +M+ +E FL+ + + R+G RG LL GPPGTGK+ + A+A + + +
Sbjct: 183 EAKQELMEIIE-FLRNPKKFMRLGAKAPRGVLLVGPPGTGKTLMARAVAGEAEVPFFTIS 241
Query: 64 LSNLL------GNNDLRHIL-IATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAG 115
S + G + +R + A +N SI+ ++++D + R+R L G
Sbjct: 242 ASQFIEMFVGVGASRVRDLFNNAKKNAPSIIFIDELDA-------VGRSRGTG---LGGG 291
Query: 116 YEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINM 172
++++Q TL+ LL+ +DG DE I++ TN + LDPALLRPGR D + +
Sbjct: 292 NDEREQ---TLNQLLSEMDGF--EAHDEVIVMSATNRPDVLDPALLRPGRFDRQVTV 343
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 23/173 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ ++ +FL+ ++R+G +G LL GPPGTGK+ L A+A ++L S+
Sbjct: 166 LQEVVQFLKDPHKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGEANVPFFNLSGSDFVE 225
Query: 68 ----LGNNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G +R + + + I+ +++ID + R R A L G+++++Q
Sbjct: 226 MFVGVGAARVRDMFEQGKKNAPCIIFIDEIDA-------VGRHRGAG---LGGGHDEREQ 275
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174
TL+ LL +DG S+ G I++ TN + LDPALLRPGR D + + +
Sbjct: 276 ---TLNQLLVEMDGFESTEG--VIMVAATNRPDVLDPALLRPGRFDRQVTVPN 323
>sp|D4HA34|FTSH_PROAS ATP-dependent zinc metalloprotease FtsH OS=Propionibacterium acnes
(strain SK137) GN=ftsH PE=3 SV=1
Length = 717
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 23/169 (13%)
Query: 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-- 67
+ ++ FL ++RVG +G LLYGPPGTGK+ L A+A + + S+
Sbjct: 179 LQEIREFLAEPAKFQRVGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 238
Query: 68 ----LGNNDLRHILIATEN--KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQ 121
+G + +R + + +I+ +++ID + R R A + G+++++Q
Sbjct: 239 MFVGVGASRVRDLFEQAKEAAPAIIFIDEIDA-------VGRHRGAG---MGGGHDEREQ 288
Query: 122 YHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
TL+ LL +DG G I+I TN + LDPALLRPGR D I
Sbjct: 289 ---TLNQLLVEMDGFDVHGG--VILIAATNRPDVLDPALLRPGRFDRQI 332
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL------LG 69
FL+ + Y +G +G LLYGPPGTGK+ L A+A + + S+ +G
Sbjct: 175 FLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 234
Query: 70 NNDLRHILIATENKS--ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127
+ +R + + S I+ +++ID + R R A G+++++Q TL+
Sbjct: 235 ASRVRDLFEQAKKNSPCIVFIDEIDA-------VGRQRGAG---YGGGHDEREQ---TLN 281
Query: 128 GLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170
LL +DG S + III TN + LDPALLRPGR D I
Sbjct: 282 QLLVEMDGF--SANEGIIIIAATNRPDVLDPALLRPGRFDRQI 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,770,405
Number of Sequences: 539616
Number of extensions: 4042523
Number of successful extensions: 21249
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 19711
Number of HSP's gapped (non-prelim): 1445
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)