Query 024550
Match_columns 266
No_of_seqs 195 out of 2295
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 4.4E-44 9.6E-49 305.4 15.8 223 3-240 157-395 (406)
2 KOG0743 AAA+-type ATPase [Post 100.0 8.3E-43 1.8E-47 306.4 21.5 234 1-243 205-440 (457)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-38 3.7E-43 288.8 16.5 198 3-218 440-646 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 5.4E-38 1.2E-42 278.9 16.3 195 4-217 311-514 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 5.4E-37 1.2E-41 276.1 17.6 197 3-217 517-726 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-35 2.5E-40 267.7 17.1 206 6-230 199-415 (802)
7 KOG0727 26S proteasome regulat 100.0 3.7E-35 7.9E-40 240.4 14.7 200 4-218 162-370 (408)
8 KOG0731 AAA+-type ATPase conta 100.0 5.1E-35 1.1E-39 273.1 17.0 218 3-235 317-551 (774)
9 KOG0728 26S proteasome regulat 100.0 6.5E-34 1.4E-38 232.9 12.3 199 4-217 154-361 (404)
10 KOG0736 Peroxisome assembly fa 100.0 2.2E-33 4.7E-38 258.4 15.5 200 3-217 678-888 (953)
11 COG1223 Predicted ATPase (AAA+ 100.0 4.1E-33 8.9E-38 229.0 15.1 188 10-219 133-329 (368)
12 PTZ00454 26S protease regulato 100.0 1.1E-32 2.4E-37 247.4 18.3 201 3-218 151-360 (398)
13 KOG0652 26S proteasome regulat 100.0 1.5E-33 3.3E-38 231.9 11.1 199 4-217 178-385 (424)
14 KOG0726 26S proteasome regulat 100.0 1.5E-33 3.3E-38 234.9 9.6 200 3-217 191-399 (440)
15 COG0465 HflB ATP-dependent Zn 100.0 3.8E-32 8.3E-37 249.8 15.7 199 3-217 156-363 (596)
16 PRK03992 proteasome-activating 100.0 1.6E-31 3.4E-36 240.6 17.9 223 3-240 137-375 (389)
17 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-31 2.4E-36 231.2 14.9 197 3-217 218-425 (491)
18 KOG0737 AAA+-type ATPase [Post 100.0 3.5E-31 7.5E-36 227.5 15.0 212 3-237 98-319 (386)
19 KOG0735 AAA+-type ATPase [Post 100.0 4.7E-31 1E-35 241.3 16.7 213 3-238 673-894 (952)
20 KOG0729 26S proteasome regulat 100.0 1.5E-31 3.1E-36 220.8 10.6 199 4-217 184-391 (435)
21 PTZ00361 26 proteosome regulat 100.0 2.1E-30 4.5E-35 234.1 18.8 199 4-217 190-397 (438)
22 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-30 2.9E-35 241.7 18.0 220 3-238 61-296 (495)
23 TIGR01243 CDC48 AAA family ATP 100.0 2E-30 4.3E-35 250.7 19.4 198 3-217 459-665 (733)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 3.3E-30 7.3E-35 236.0 19.0 200 23-241 251-467 (489)
25 COG0464 SpoVK ATPases of the A 100.0 1.2E-29 2.6E-34 235.7 19.6 198 3-218 248-456 (494)
26 TIGR03689 pup_AAA proteasome A 100.0 7.7E-30 1.7E-34 233.5 16.9 194 3-217 188-403 (512)
27 CHL00206 ycf2 Ycf2; Provisiona 100.0 1E-29 2.2E-34 252.7 17.1 177 19-217 1618-1850(2281)
28 CHL00176 ftsH cell division pr 100.0 3.8E-29 8.3E-34 235.6 17.6 218 4-237 190-423 (638)
29 KOG0739 AAA+-type ATPase [Post 100.0 2E-30 4.3E-35 216.9 7.8 207 4-235 140-356 (439)
30 KOG0651 26S proteasome regulat 100.0 3.7E-30 7.9E-35 216.2 8.7 198 3-217 138-346 (388)
31 PLN00020 ribulose bisphosphate 100.0 1E-28 2.3E-33 214.3 16.7 166 23-207 140-329 (413)
32 TIGR01242 26Sp45 26S proteasom 100.0 9.4E-29 2E-33 221.4 16.7 200 3-217 128-336 (364)
33 PRK10733 hflB ATP-dependent me 100.0 4.1E-27 8.9E-32 223.7 19.3 198 5-218 160-366 (644)
34 TIGR01243 CDC48 AAA family ATP 99.9 2.6E-25 5.6E-30 215.2 19.0 197 3-217 184-389 (733)
35 KOG0730 AAA+-type ATPase [Post 99.9 3.9E-25 8.5E-30 201.9 15.3 192 6-217 193-394 (693)
36 KOG0740 AAA+-type ATPase [Post 99.9 1.2E-25 2.6E-30 199.5 11.6 197 3-218 159-365 (428)
37 KOG0741 AAA+-type ATPase [Post 99.9 3.9E-26 8.5E-31 203.4 7.5 201 1-217 226-448 (744)
38 KOG0732 AAA+-type ATPase conta 99.9 4E-25 8.8E-30 212.0 14.9 197 3-217 271-482 (1080)
39 PF05496 RuvB_N: Holliday junc 99.9 1.1E-21 2.3E-26 160.6 16.6 165 32-217 51-222 (233)
40 PF00004 AAA: ATPase family as 99.8 3.3E-21 7.2E-26 147.6 9.0 123 34-174 1-132 (132)
41 COG2255 RuvB Holliday junction 99.8 6.2E-20 1.3E-24 153.3 15.4 170 32-217 53-223 (332)
42 CHL00181 cbbX CbbX; Provisiona 99.8 2.9E-19 6.4E-24 154.5 16.7 170 3-198 29-219 (287)
43 TIGR02881 spore_V_K stage V sp 99.8 5.5E-19 1.2E-23 151.4 17.1 169 4-199 13-202 (261)
44 TIGR02880 cbbX_cfxQ probable R 99.8 8.1E-19 1.8E-23 151.8 16.1 170 4-199 29-219 (284)
45 KOG0742 AAA+-type ATPase [Post 99.8 3.5E-19 7.5E-24 155.2 12.5 141 30-191 383-531 (630)
46 KOG2004 Mitochondrial ATP-depe 99.8 3.6E-19 7.8E-24 164.0 12.7 218 1-240 409-644 (906)
47 PRK00080 ruvB Holliday junctio 99.8 6.1E-18 1.3E-22 149.6 16.9 160 30-218 50-224 (328)
48 PF05673 DUF815: Protein of un 99.8 9.2E-18 2E-22 139.2 16.3 190 3-235 33-246 (249)
49 TIGR00635 ruvB Holliday juncti 99.8 1E-17 2.2E-22 146.7 17.3 158 31-217 30-202 (305)
50 KOG0744 AAA+-type ATPase [Post 99.8 7.1E-19 1.5E-23 149.2 9.1 146 28-189 174-341 (423)
51 COG0466 Lon ATP-dependent Lon 99.8 4.7E-18 1E-22 157.3 15.1 208 7-239 329-555 (782)
52 COG2256 MGS1 ATPase related to 99.8 4.3E-18 9.3E-23 148.5 14.0 122 31-189 48-177 (436)
53 TIGR00763 lon ATP-dependent pr 99.7 3.1E-17 6.7E-22 159.7 16.0 132 31-188 347-505 (775)
54 KOG0736 Peroxisome assembly fa 99.7 3.2E-16 7E-21 145.7 14.3 170 28-218 428-607 (953)
55 PRK14956 DNA polymerase III su 99.7 3.7E-16 8E-21 141.9 14.4 153 31-217 40-223 (484)
56 PRK14962 DNA polymerase III su 99.7 7E-16 1.5E-20 141.7 15.6 154 30-217 35-219 (472)
57 PRK07003 DNA polymerase III su 99.7 6.7E-16 1.5E-20 145.6 15.6 154 30-217 37-221 (830)
58 PRK12323 DNA polymerase III su 99.7 3E-16 6.6E-21 146.1 12.8 153 31-217 38-226 (700)
59 PRK04195 replication factor C 99.7 2.5E-15 5.4E-20 139.3 17.9 155 31-217 39-203 (482)
60 TIGR02640 gas_vesic_GvpN gas v 99.7 2.4E-15 5.2E-20 128.9 16.5 128 32-189 22-199 (262)
61 PRK06893 DNA replication initi 99.7 8.3E-16 1.8E-20 129.2 12.9 158 32-217 40-204 (229)
62 TIGR02639 ClpA ATP-dependent C 99.7 2.5E-16 5.4E-21 152.6 10.5 134 30-190 202-360 (731)
63 PRK14960 DNA polymerase III su 99.7 1.5E-15 3.3E-20 141.7 14.2 154 30-217 36-220 (702)
64 PRK10787 DNA-binding ATP-depen 99.6 2.7E-15 5.8E-20 145.3 15.6 132 31-189 349-507 (784)
65 PRK14958 DNA polymerase III su 99.6 1.8E-15 3.9E-20 140.3 13.7 154 30-217 37-221 (509)
66 COG2607 Predicted ATPase (AAA+ 99.6 1.3E-14 2.9E-19 118.8 16.9 190 4-236 67-279 (287)
67 TIGR03345 VI_ClpV1 type VI sec 99.6 1.2E-15 2.7E-20 149.1 13.0 132 31-190 208-365 (852)
68 PRK14961 DNA polymerase III su 99.6 5.4E-15 1.2E-19 132.4 15.3 154 30-217 37-221 (363)
69 PRK14949 DNA polymerase III su 99.6 4.3E-15 9.4E-20 142.5 15.3 154 30-217 37-221 (944)
70 PRK05342 clpX ATP-dependent pr 99.6 1.9E-15 4.2E-20 136.4 12.2 141 31-186 108-323 (412)
71 PRK13342 recombination factor 99.6 8.2E-15 1.8E-19 133.4 16.2 150 31-217 36-197 (413)
72 PRK06645 DNA polymerase III su 99.6 6.1E-15 1.3E-19 136.1 15.1 154 30-217 42-230 (507)
73 PLN03025 replication factor C 99.6 7.4E-15 1.6E-19 129.4 14.7 151 33-217 36-201 (319)
74 KOG0735 AAA+-type ATPase [Post 99.6 3.8E-15 8.2E-20 137.7 13.0 174 30-217 430-617 (952)
75 PRK07994 DNA polymerase III su 99.6 7E-15 1.5E-19 138.6 15.1 154 30-217 37-221 (647)
76 PRK11034 clpA ATP-dependent Cl 99.6 6.5E-15 1.4E-19 141.8 15.2 172 32-236 489-710 (758)
77 PRK14964 DNA polymerase III su 99.6 8.3E-15 1.8E-19 134.3 14.3 154 30-217 34-218 (491)
78 PRK14951 DNA polymerase III su 99.6 1E-14 2.2E-19 137.1 14.4 154 30-217 37-226 (618)
79 TIGR00382 clpX endopeptidase C 99.6 5.8E-15 1.3E-19 132.8 12.0 189 31-238 116-381 (413)
80 PRK00149 dnaA chromosomal repl 99.6 3.9E-15 8.4E-20 137.0 11.1 157 32-217 149-323 (450)
81 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.6E-14 3.4E-19 121.0 13.8 157 30-217 37-202 (226)
82 TIGR00362 DnaA chromosomal rep 99.6 6.1E-15 1.3E-19 134.1 12.1 157 32-217 137-311 (405)
83 PRK08691 DNA polymerase III su 99.6 8.5E-15 1.8E-19 137.8 13.3 154 30-217 37-221 (709)
84 PRK10865 protein disaggregatio 99.6 7.9E-15 1.7E-19 143.8 13.6 132 31-190 199-356 (857)
85 TIGR02902 spore_lonB ATP-depen 99.6 1.4E-14 3E-19 135.5 14.3 157 31-217 86-305 (531)
86 TIGR03346 chaperone_ClpB ATP-d 99.6 1.6E-14 3.6E-19 141.9 15.0 133 30-190 193-351 (852)
87 PRK14957 DNA polymerase III su 99.6 2.3E-14 5E-19 133.1 14.9 154 30-217 37-221 (546)
88 PRK14963 DNA polymerase III su 99.6 3.5E-14 7.6E-19 131.5 15.9 154 30-217 35-218 (504)
89 PRK07940 DNA polymerase III su 99.6 4.2E-14 9E-19 127.2 15.5 153 26-216 31-213 (394)
90 KOG2028 ATPase related to the 99.6 6.8E-15 1.5E-19 127.1 10.0 121 32-189 163-295 (554)
91 PRK08084 DNA replication initi 99.6 1.5E-14 3.1E-19 122.1 11.8 157 31-217 45-210 (235)
92 PRK14969 DNA polymerase III su 99.6 1.5E-14 3.3E-19 134.9 13.1 154 30-217 37-221 (527)
93 PRK14952 DNA polymerase III su 99.6 2.6E-14 5.6E-19 133.9 14.6 154 30-217 34-220 (584)
94 PRK11034 clpA ATP-dependent Cl 99.6 6.1E-15 1.3E-19 142.0 10.4 133 31-190 207-364 (758)
95 PRK08727 hypothetical protein; 99.6 1.6E-14 3.4E-19 121.7 11.7 154 32-216 42-204 (233)
96 TIGR01650 PD_CobS cobaltochela 99.6 2.5E-14 5.3E-19 124.4 13.0 136 28-189 61-234 (327)
97 PRK05563 DNA polymerase III su 99.6 4.1E-14 8.8E-19 132.9 15.4 154 30-217 37-221 (559)
98 PHA02544 44 clamp loader, smal 99.6 3E-14 6.6E-19 125.3 13.7 123 31-187 43-172 (316)
99 PF00308 Bac_DnaA: Bacterial d 99.6 1.6E-14 3.4E-19 120.5 10.9 156 33-217 36-209 (219)
100 PRK07764 DNA polymerase III su 99.6 3.7E-14 7.9E-19 137.6 15.0 152 30-215 36-220 (824)
101 CHL00095 clpC Clp protease ATP 99.6 8.1E-14 1.7E-18 136.7 17.0 133 28-188 197-354 (821)
102 TIGR02928 orc1/cdc6 family rep 99.6 1.1E-13 2.3E-18 124.2 16.3 132 31-189 40-213 (365)
103 PRK14965 DNA polymerase III su 99.6 3.3E-14 7.3E-19 134.0 13.4 154 30-217 37-221 (576)
104 PRK05896 DNA polymerase III su 99.6 4.5E-14 9.8E-19 131.6 14.0 154 30-217 37-221 (605)
105 TIGR02397 dnaX_nterm DNA polym 99.6 6.1E-14 1.3E-18 125.3 14.2 154 30-217 35-219 (355)
106 PRK05642 DNA replication initi 99.6 4.9E-14 1.1E-18 118.8 12.7 155 32-217 46-209 (234)
107 PRK12422 chromosomal replicati 99.6 3.1E-14 6.7E-19 130.2 12.0 157 32-217 142-314 (445)
108 PRK07133 DNA polymerase III su 99.6 8.5E-14 1.8E-18 132.2 15.0 154 30-217 39-220 (725)
109 PRK14959 DNA polymerase III su 99.5 8.1E-14 1.7E-18 130.5 14.3 153 31-217 38-221 (624)
110 KOG0989 Replication factor C, 99.5 1.5E-14 3.2E-19 122.4 8.5 152 32-217 58-231 (346)
111 TIGR02639 ClpA ATP-dependent C 99.5 1.7E-13 3.7E-18 132.9 17.1 172 33-238 486-708 (731)
112 PRK09111 DNA polymerase III su 99.5 1.1E-13 2.4E-18 130.3 14.9 154 30-217 45-234 (598)
113 PRK14953 DNA polymerase III su 99.5 1.6E-13 3.6E-18 126.6 14.7 154 30-217 37-221 (486)
114 PRK08903 DnaA regulatory inact 99.5 3.2E-13 6.8E-18 113.4 14.9 152 29-217 40-200 (227)
115 COG0542 clpA ATP-binding subun 99.5 1.2E-13 2.6E-18 131.2 13.5 190 16-238 502-751 (786)
116 PRK06620 hypothetical protein; 99.5 1.4E-13 2.9E-18 114.4 12.3 141 32-217 45-190 (214)
117 PRK12402 replication factor C 99.5 3.5E-13 7.5E-18 119.4 15.5 151 33-217 38-227 (337)
118 PRK14970 DNA polymerase III su 99.5 3.6E-13 7.8E-18 121.0 15.7 154 30-217 38-210 (367)
119 PRK06305 DNA polymerase III su 99.5 2.9E-13 6.3E-18 124.1 15.2 154 30-217 38-223 (451)
120 PRK14948 DNA polymerase III su 99.5 2.7E-13 5.8E-18 128.4 15.1 153 31-217 38-223 (620)
121 PRK13341 recombination factor 99.5 2.2E-13 4.7E-18 130.8 14.6 149 32-217 53-218 (725)
122 PTZ00112 origin recognition co 99.5 6.9E-13 1.5E-17 126.4 17.6 139 31-199 781-960 (1164)
123 PRK14086 dnaA chromosomal repl 99.5 9E-14 1.9E-18 129.7 11.5 156 33-217 316-489 (617)
124 PRK14088 dnaA chromosomal repl 99.5 7.6E-14 1.7E-18 127.7 10.5 158 32-218 131-307 (440)
125 PRK06647 DNA polymerase III su 99.5 3.2E-13 7E-18 126.6 14.4 154 30-217 37-221 (563)
126 PRK14954 DNA polymerase III su 99.5 3.9E-13 8.4E-18 126.9 15.0 155 29-217 36-229 (620)
127 PRK14955 DNA polymerase III su 99.5 1.8E-13 4E-18 123.9 12.2 154 30-217 37-229 (397)
128 PRK08451 DNA polymerase III su 99.5 5.2E-13 1.1E-17 123.7 15.0 154 30-217 35-219 (535)
129 COG0714 MoxR-like ATPases [Gen 99.5 2.1E-13 4.5E-18 120.7 11.4 131 30-189 42-204 (329)
130 PRK14087 dnaA chromosomal repl 99.5 2E-13 4.3E-18 125.2 11.5 158 32-218 142-321 (450)
131 PRK00411 cdc6 cell division co 99.5 1.7E-12 3.6E-17 117.6 16.9 131 31-189 55-221 (394)
132 PF07728 AAA_5: AAA domain (dy 99.5 5.3E-14 1.1E-18 109.0 5.9 105 33-166 1-139 (139)
133 cd00009 AAA The AAA+ (ATPases 99.5 6.3E-13 1.4E-17 102.5 11.9 115 30-173 18-150 (151)
134 COG2812 DnaX DNA polymerase II 99.5 4.6E-13 1E-17 122.7 12.4 153 31-217 38-221 (515)
135 PRK14950 DNA polymerase III su 99.5 1.2E-12 2.6E-17 124.0 15.0 153 31-217 38-222 (585)
136 TIGR00678 holB DNA polymerase 99.5 1.7E-12 3.7E-17 105.8 13.4 124 30-187 13-167 (188)
137 PRK14971 DNA polymerase III su 99.5 1.7E-12 3.6E-17 123.0 15.2 154 30-217 38-223 (614)
138 PRK10865 protein disaggregatio 99.5 1.7E-12 3.6E-17 127.6 15.6 172 33-237 600-824 (857)
139 TIGR00390 hslU ATP-dependent p 99.4 2.3E-12 4.9E-17 115.1 14.8 87 81-184 246-342 (441)
140 PRK05201 hslU ATP-dependent pr 99.4 1.1E-12 2.4E-17 117.2 12.7 86 82-184 249-344 (443)
141 PRK05707 DNA polymerase III su 99.4 8.1E-12 1.8E-16 110.0 17.7 149 30-215 21-202 (328)
142 TIGR02903 spore_lon_C ATP-depe 99.4 2.7E-12 5.9E-17 121.9 15.6 182 29-216 173-394 (615)
143 COG1224 TIP49 DNA helicase TIP 99.4 3.9E-12 8.4E-17 109.9 14.9 88 83-205 292-391 (450)
144 PRK09087 hypothetical protein; 99.4 1.6E-12 3.4E-17 108.9 12.3 143 33-215 46-194 (226)
145 PRK00440 rfc replication facto 99.4 3.2E-12 7E-17 112.4 14.9 151 33-217 40-204 (319)
146 TIGR03346 chaperone_ClpB ATP-d 99.4 2.6E-12 5.7E-17 126.5 14.8 129 32-189 596-777 (852)
147 PHA02244 ATPase-like protein 99.4 8.7E-13 1.9E-17 116.1 10.1 119 31-177 119-263 (383)
148 COG1474 CDC6 Cdc6-related prot 99.4 1E-11 2.2E-16 110.8 17.0 129 31-189 42-204 (366)
149 CHL00095 clpC Clp protease ATP 99.4 4.6E-12 1E-16 124.4 15.8 172 33-237 541-777 (821)
150 PRK05564 DNA polymerase III su 99.4 5.9E-11 1.3E-15 104.4 18.8 151 30-217 25-191 (313)
151 TIGR03345 VI_ClpV1 type VI sec 99.4 6.6E-12 1.4E-16 123.1 13.8 127 33-190 598-782 (852)
152 PRK09112 DNA polymerase III su 99.4 7.4E-11 1.6E-15 104.8 18.5 153 30-217 44-241 (351)
153 PF06068 TIP49: TIP49 C-termin 99.4 4.8E-12 1E-16 110.6 10.6 86 83-203 279-376 (398)
154 COG0464 SpoVK ATPases of the A 99.4 7.9E-12 1.7E-16 116.6 12.8 182 16-217 3-193 (494)
155 PF07726 AAA_3: ATPase family 99.4 5E-13 1.1E-17 100.4 3.8 106 33-167 1-130 (131)
156 PRK07471 DNA polymerase III su 99.4 8E-11 1.7E-15 105.2 18.6 151 30-217 40-239 (365)
157 PRK13407 bchI magnesium chelat 99.3 6.2E-12 1.3E-16 110.7 10.8 129 32-189 30-217 (334)
158 PF07724 AAA_2: AAA domain (Cd 99.3 2.9E-12 6.4E-17 102.7 7.8 109 30-154 2-131 (171)
159 KOG1969 DNA replication checkp 99.3 5E-11 1.1E-15 111.1 16.9 148 28-204 323-498 (877)
160 CHL00081 chlI Mg-protoporyphyr 99.3 3.6E-11 7.8E-16 106.2 13.9 79 82-189 144-233 (350)
161 COG0542 clpA ATP-binding subun 99.3 1.4E-11 3E-16 117.4 11.5 197 31-261 191-418 (786)
162 PRK06964 DNA polymerase III su 99.3 2.4E-10 5.1E-15 101.0 18.3 125 29-187 19-203 (342)
163 COG0593 DnaA ATPase involved i 99.3 2.2E-11 4.8E-16 108.8 10.7 156 32-217 114-287 (408)
164 PRK11331 5-methylcytosine-spec 99.3 6.6E-11 1.4E-15 106.9 13.6 135 30-178 193-362 (459)
165 PRK08058 DNA polymerase III su 99.3 4.5E-10 9.7E-15 99.4 17.7 123 30-186 27-180 (329)
166 COG0470 HolB ATPase involved i 99.3 1.9E-10 4.1E-15 101.3 14.8 120 31-184 24-177 (325)
167 PRK07993 DNA polymerase III su 99.3 3.2E-10 7E-15 100.2 16.2 151 29-217 22-205 (334)
168 PRK06871 DNA polymerase III su 99.2 6E-10 1.3E-14 97.7 17.5 125 30-188 23-179 (325)
169 TIGR02030 BchI-ChlI magnesium 99.2 3.6E-11 7.9E-16 106.1 9.7 129 31-188 25-219 (337)
170 PRK07399 DNA polymerase III su 99.2 2.7E-10 5.7E-15 99.9 15.1 150 31-217 26-222 (314)
171 PRK04132 replication factor C 99.2 1.1E-10 2.3E-15 113.3 13.5 150 34-217 567-732 (846)
172 PF13177 DNA_pol3_delta2: DNA 99.2 1.7E-10 3.7E-15 91.8 12.5 112 30-175 18-161 (162)
173 smart00382 AAA ATPases associa 99.2 4.7E-11 1E-15 91.1 8.5 66 31-96 2-92 (148)
174 PRK13531 regulatory ATPase Rav 99.2 1.2E-10 2.5E-15 106.1 11.6 131 28-187 36-193 (498)
175 PRK08769 DNA polymerase III su 99.2 1E-09 2.2E-14 96.2 16.8 150 29-217 24-209 (319)
176 COG1220 HslU ATP-dependent pro 99.2 1E-09 2.2E-14 94.5 16.2 136 82-238 250-404 (444)
177 PRK08116 hypothetical protein; 99.2 5.6E-11 1.2E-15 102.1 8.3 117 31-177 114-251 (268)
178 COG1219 ClpX ATP-dependent pro 99.2 3E-10 6.4E-15 97.0 12.4 94 32-138 98-205 (408)
179 PRK06090 DNA polymerase III su 99.2 1.4E-09 3.1E-14 95.2 16.9 148 29-217 23-202 (319)
180 TIGR02974 phageshock_pspF psp 99.2 4E-10 8.7E-15 99.6 13.0 157 31-217 22-226 (329)
181 KOG0745 Putative ATP-dependent 99.2 1.6E-10 3.5E-15 102.2 9.2 65 32-96 227-305 (564)
182 KOG1942 DNA helicase, TBP-inte 99.1 9.7E-10 2.1E-14 93.0 13.1 88 83-205 297-397 (456)
183 smart00350 MCM minichromosome 99.1 1.2E-10 2.7E-15 108.6 8.3 128 33-189 238-401 (509)
184 PRK08181 transposase; Validate 99.1 1.9E-10 4.2E-15 98.5 8.1 65 31-95 106-180 (269)
185 TIGR02442 Cob-chelat-sub cobal 99.1 4.8E-10 1.1E-14 107.2 11.4 128 32-188 26-214 (633)
186 TIGR02031 BchD-ChlD magnesium 99.1 2.5E-10 5.5E-15 108.1 9.3 128 32-188 17-174 (589)
187 PF01078 Mg_chelatase: Magnesi 99.1 4.7E-11 1E-15 97.3 3.5 25 31-55 22-46 (206)
188 PF12775 AAA_7: P-loop contain 99.1 1.4E-10 3E-15 99.8 6.3 134 31-189 33-194 (272)
189 PF00158 Sigma54_activat: Sigm 99.1 2.9E-10 6.2E-15 90.9 7.5 65 31-96 22-107 (168)
190 PRK11608 pspF phage shock prot 99.1 1E-09 2.2E-14 97.0 11.7 157 31-217 29-233 (326)
191 PF01695 IstB_IS21: IstB-like 99.1 1.1E-10 2.5E-15 94.1 4.8 65 30-94 46-120 (178)
192 TIGR01817 nifA Nif-specific re 99.1 1.3E-09 2.8E-14 102.7 12.2 157 31-217 219-421 (534)
193 PRK08699 DNA polymerase III su 99.1 1.3E-09 2.8E-14 96.1 11.3 124 29-186 19-183 (325)
194 PRK12377 putative replication 99.1 2.8E-10 6.1E-15 96.3 6.4 64 31-94 101-175 (248)
195 PRK06526 transposase; Provisio 99.1 1.4E-10 3.1E-15 98.7 4.5 65 31-95 98-172 (254)
196 PF12774 AAA_6: Hydrolytic ATP 99.0 3.1E-09 6.6E-14 89.1 11.7 140 28-190 29-182 (231)
197 smart00763 AAA_PrkA PrkA AAA d 99.0 6.6E-09 1.4E-13 91.7 13.5 69 120-191 247-330 (361)
198 PF03969 AFG1_ATPase: AFG1-lik 99.0 3.8E-10 8.3E-15 100.5 5.5 96 28-153 59-168 (362)
199 PRK06835 DNA replication prote 99.0 1.8E-09 3.8E-14 95.2 9.6 63 32-94 184-258 (329)
200 KOG0741 AAA+-type ATPase [Post 99.0 1.6E-09 3.5E-14 98.0 9.3 135 32-186 539-684 (744)
201 TIGR00602 rad24 checkpoint pro 99.0 4.8E-09 1E-13 99.4 12.9 133 30-191 109-290 (637)
202 PRK08939 primosomal protein Dn 99.0 1.9E-09 4.2E-14 94.1 9.5 65 30-94 155-229 (306)
203 TIGR03015 pepcterm_ATPase puta 99.0 3.4E-08 7.4E-13 84.7 16.6 57 159-217 178-239 (269)
204 PRK15424 propionate catabolism 99.0 4.8E-09 1E-13 97.9 12.0 65 31-96 242-336 (538)
205 PRK07952 DNA replication prote 99.0 7.5E-10 1.6E-14 93.5 6.0 63 32-94 100-174 (244)
206 PRK11388 DNA-binding transcrip 99.0 6E-09 1.3E-13 100.2 12.4 158 31-218 348-548 (638)
207 COG3829 RocR Transcriptional r 99.0 4.8E-09 1E-13 95.7 10.5 160 28-218 265-473 (560)
208 COG1484 DnaC DNA replication p 98.9 1.9E-09 4.2E-14 91.8 7.2 65 30-94 104-179 (254)
209 COG2204 AtoC Response regulato 98.9 9.4E-09 2E-13 93.4 11.5 157 31-218 164-368 (464)
210 TIGR00368 Mg chelatase-related 98.9 3.8E-09 8.2E-14 97.9 8.8 120 31-179 211-395 (499)
211 KOG2227 Pre-initiation complex 98.9 5.9E-08 1.3E-12 87.0 15.7 159 31-217 175-369 (529)
212 KOG0991 Replication factor C, 98.9 4.7E-09 1E-13 86.3 7.9 130 33-196 50-193 (333)
213 PRK09862 putative ATP-dependen 98.9 2.6E-09 5.5E-14 98.8 7.1 120 30-178 209-391 (506)
214 KOG1514 Origin recognition com 98.9 5.1E-08 1.1E-12 91.1 15.5 142 32-204 423-604 (767)
215 COG1239 ChlI Mg-chelatase subu 98.9 3.5E-08 7.6E-13 87.7 13.4 81 82-191 144-235 (423)
216 TIGR02329 propionate_PrpR prop 98.9 1.3E-08 2.8E-13 95.0 11.4 65 31-96 235-321 (526)
217 PF13173 AAA_14: AAA domain 98.9 1.1E-08 2.5E-13 78.0 9.0 63 32-94 3-73 (128)
218 PF00910 RNA_helicase: RNA hel 98.9 2.2E-09 4.9E-14 79.3 4.7 62 34-95 1-62 (107)
219 PRK05022 anaerobic nitric oxid 98.9 4.7E-08 1E-12 91.6 14.0 156 31-217 210-413 (509)
220 PRK05818 DNA polymerase III su 98.9 1.3E-07 2.9E-12 79.9 15.2 113 29-175 5-147 (261)
221 PRK07132 DNA polymerase III su 98.9 2.1E-07 4.6E-12 80.9 16.9 165 30-236 17-202 (299)
222 PRK10820 DNA-binding transcrip 98.9 3.2E-08 6.9E-13 92.8 12.5 65 31-96 227-312 (520)
223 PRK09183 transposase/IS protei 98.9 6.3E-09 1.4E-13 89.0 7.1 64 31-94 102-176 (259)
224 KOG2035 Replication factor C, 98.8 4E-08 8.6E-13 82.7 11.5 142 32-207 35-219 (351)
225 PRK15429 formate hydrogenlyase 98.8 5.7E-08 1.2E-12 94.2 14.4 156 31-217 399-602 (686)
226 PF14532 Sigma54_activ_2: Sigm 98.8 3.5E-09 7.6E-14 81.9 4.3 60 31-96 21-83 (138)
227 PRK07276 DNA polymerase III su 98.8 6.4E-07 1.4E-11 77.4 18.4 145 30-217 23-198 (290)
228 PF03215 Rad17: Rad17 cell cyc 98.8 6E-08 1.3E-12 90.3 12.7 49 10-62 28-76 (519)
229 PF01637 Arch_ATPase: Archaeal 98.8 5.3E-08 1.1E-12 81.1 10.9 158 31-215 20-233 (234)
230 PF05621 TniB: Bacterial TniB 98.8 1.2E-07 2.7E-12 81.4 12.9 160 32-218 62-263 (302)
231 COG1221 PspF Transcriptional r 98.8 2.2E-08 4.8E-13 89.5 8.6 66 31-96 101-187 (403)
232 KOG2680 DNA helicase TIP49, TB 98.8 3.9E-08 8.5E-13 83.7 9.5 49 153-204 339-387 (454)
233 COG0606 Predicted ATPase with 98.8 2.1E-08 4.6E-13 90.3 8.2 25 31-55 198-222 (490)
234 PTZ00111 DNA replication licen 98.8 2.2E-08 4.7E-13 97.2 8.3 125 33-186 494-655 (915)
235 PRK05917 DNA polymerase III su 98.7 2E-07 4.3E-12 80.4 12.7 113 30-176 18-155 (290)
236 PRK06921 hypothetical protein; 98.7 3.1E-08 6.8E-13 85.0 7.6 63 31-93 117-188 (266)
237 KOG1051 Chaperone HSP104 and r 98.7 3.5E-07 7.7E-12 88.8 15.4 95 31-152 591-710 (898)
238 TIGR02915 PEP_resp_reg putativ 98.7 1.5E-07 3.2E-12 86.8 12.1 156 31-217 162-365 (445)
239 PF13401 AAA_22: AAA domain; P 98.7 4.6E-08 9.9E-13 74.5 7.2 38 31-68 4-49 (131)
240 COG1485 Predicted ATPase [Gene 98.7 2.4E-08 5.1E-13 86.8 6.1 99 28-156 62-175 (367)
241 PRK11361 acetoacetate metaboli 98.7 2.3E-07 5E-12 85.7 11.5 157 31-218 166-370 (457)
242 PF05729 NACHT: NACHT domain 98.7 2.7E-07 5.8E-12 72.8 10.2 132 33-190 2-165 (166)
243 PRK10923 glnG nitrogen regulat 98.6 4.7E-07 1E-11 84.0 13.3 157 31-217 161-364 (469)
244 TIGR01818 ntrC nitrogen regula 98.6 6.7E-07 1.4E-11 82.8 13.5 158 31-218 157-361 (463)
245 TIGR00764 lon_rel lon-related 98.6 3.1E-07 6.8E-12 87.4 11.5 28 31-58 37-64 (608)
246 PRK13406 bchD magnesium chelat 98.6 2.6E-07 5.7E-12 87.2 9.3 119 32-179 26-173 (584)
247 PF00493 MCM: MCM2/3/5 family 98.5 5.6E-08 1.2E-12 86.1 4.0 129 33-190 59-223 (331)
248 COG3604 FhlA Transcriptional r 98.5 5.6E-07 1.2E-11 81.5 10.2 65 31-95 246-330 (550)
249 COG5271 MDN1 AAA ATPase contai 98.5 6.1E-07 1.3E-11 90.5 11.1 131 31-192 1543-1707(4600)
250 PRK15115 response regulator Gl 98.5 1.7E-06 3.7E-11 79.7 13.1 65 31-96 157-242 (444)
251 KOG1970 Checkpoint RAD17-RFC c 98.5 2.7E-06 5.9E-11 77.9 13.6 52 10-63 91-142 (634)
252 PHA02624 large T antigen; Prov 98.5 3.1E-07 6.7E-12 85.6 7.8 124 27-173 427-560 (647)
253 KOG0990 Replication factor C, 98.5 4.9E-07 1.1E-11 77.6 7.3 128 33-194 64-209 (360)
254 PF00931 NB-ARC: NB-ARC domain 98.5 4.7E-06 1E-10 72.0 13.6 148 30-214 18-200 (287)
255 KOG1968 Replication factor C, 98.4 6.9E-07 1.5E-11 87.3 7.9 148 34-216 360-528 (871)
256 PHA00729 NTP-binding motif con 98.4 7.3E-07 1.6E-11 74.1 6.7 26 32-57 18-43 (226)
257 PRK10365 transcriptional regul 98.4 7.6E-06 1.6E-10 75.2 14.1 65 31-96 162-247 (441)
258 PHA02774 E1; Provisional 98.4 3.6E-06 7.9E-11 78.3 11.5 58 27-91 430-488 (613)
259 cd01120 RecA-like_NTPases RecA 98.4 6.7E-06 1.5E-10 64.4 11.5 63 34-96 2-99 (165)
260 KOG0478 DNA replication licens 98.4 1.4E-06 3.1E-11 81.3 8.2 129 32-189 463-631 (804)
261 PF13207 AAA_17: AAA domain; P 98.4 4.4E-07 9.5E-12 68.2 4.1 30 34-63 2-31 (121)
262 COG5245 DYN1 Dynein, heavy cha 98.3 3.6E-06 7.7E-11 84.5 10.6 139 28-191 1491-1661(3164)
263 PF05272 VirE: Virulence-assoc 98.3 2.6E-06 5.7E-11 69.8 7.6 113 27-174 48-169 (198)
264 PF10443 RNA12: RNA12 protein; 98.3 4.6E-05 1E-09 68.6 15.4 91 144-236 185-301 (431)
265 PRK00131 aroK shikimate kinase 98.2 1.3E-06 2.8E-11 69.7 4.6 35 29-63 2-36 (175)
266 PF14516 AAA_35: AAA-like doma 98.2 4.1E-05 8.8E-10 67.9 14.1 135 31-190 31-216 (331)
267 TIGR02688 conserved hypothetic 98.2 4.2E-05 9.1E-10 69.0 13.9 61 31-95 209-273 (449)
268 TIGR02237 recomb_radB DNA repa 98.2 1.1E-05 2.3E-10 66.7 9.6 40 27-66 8-50 (209)
269 PF13604 AAA_30: AAA domain; P 98.2 2.3E-05 5E-10 64.2 10.7 64 32-95 19-106 (196)
270 PRK07261 topology modulation p 98.2 5.1E-06 1.1E-10 66.6 6.6 32 33-64 2-33 (171)
271 COG4650 RtcR Sigma54-dependent 98.2 4.5E-06 9.8E-11 71.2 6.4 70 27-96 204-296 (531)
272 COG4619 ABC-type uncharacteriz 98.2 4.3E-06 9.4E-11 65.8 5.6 25 31-55 29-53 (223)
273 PRK08118 topology modulation p 98.1 1.9E-06 4.2E-11 68.8 3.8 32 33-64 3-34 (167)
274 COG1373 Predicted ATPase (AAA+ 98.1 3.5E-05 7.6E-10 70.0 12.2 125 23-182 30-161 (398)
275 PRK00771 signal recognition pa 98.1 2.1E-05 4.6E-10 71.9 10.4 38 30-67 94-134 (437)
276 PF05707 Zot: Zonular occluden 98.1 8.3E-06 1.8E-10 66.7 7.0 115 34-175 3-146 (193)
277 PRK06581 DNA polymerase III su 98.1 7.5E-05 1.6E-09 62.4 12.5 128 31-192 15-165 (263)
278 PRK08154 anaerobic benzoate ca 98.1 7.4E-06 1.6E-10 71.9 6.9 58 1-63 108-165 (309)
279 PRK13765 ATP-dependent proteas 98.1 8.7E-06 1.9E-10 77.7 7.8 26 31-56 50-75 (637)
280 PRK12723 flagellar biosynthesi 98.1 2.1E-05 4.5E-10 70.9 9.6 25 31-55 174-198 (388)
281 KOG2170 ATPase of the AAA+ sup 98.1 4.6E-05 9.9E-10 65.2 10.4 63 34-96 113-192 (344)
282 COG1618 Predicted nucleotide k 98.1 4.9E-05 1.1E-09 59.4 9.7 25 31-55 5-29 (179)
283 PRK14722 flhF flagellar biosyn 98.1 1.6E-05 3.4E-10 71.2 8.0 64 31-94 137-227 (374)
284 TIGR01618 phage_P_loop phage n 98.0 5.2E-06 1.1E-10 69.0 4.5 64 31-96 12-95 (220)
285 PRK05800 cobU adenosylcobinami 98.0 3.1E-05 6.7E-10 62.0 8.8 64 33-96 3-90 (170)
286 PRK13947 shikimate kinase; Pro 98.0 4.9E-06 1.1E-10 66.4 4.2 31 33-63 3-33 (171)
287 KOG2383 Predicted ATPase [Gene 98.0 1.5E-05 3.3E-10 70.6 7.3 27 29-55 112-138 (467)
288 PRK03839 putative kinase; Prov 98.0 4.8E-06 1E-10 67.2 3.9 31 33-63 2-32 (180)
289 PF13671 AAA_33: AAA domain; P 98.0 4.7E-06 1E-10 64.3 3.7 26 34-59 2-27 (143)
290 KOG2543 Origin recognition com 98.0 3.6E-05 7.9E-10 67.8 9.5 39 30-68 29-67 (438)
291 PRK00625 shikimate kinase; Pro 98.0 5.6E-06 1.2E-10 66.5 4.1 31 33-63 2-32 (173)
292 PRK05973 replicative DNA helic 98.0 4.4E-05 9.4E-10 64.3 9.5 39 27-65 60-101 (237)
293 KOG1051 Chaperone HSP104 and r 98.0 2.7E-05 5.8E-10 76.1 9.0 130 31-188 208-363 (898)
294 PF07693 KAP_NTPase: KAP famil 98.0 9.2E-05 2E-09 65.2 11.7 30 29-58 18-47 (325)
295 KOG3347 Predicted nucleotide k 98.0 6E-06 1.3E-10 63.5 3.6 44 31-76 7-50 (176)
296 cd00464 SK Shikimate kinase (S 98.0 7E-06 1.5E-10 64.2 4.0 31 33-63 1-31 (154)
297 PRK13949 shikimate kinase; Pro 98.0 7E-06 1.5E-10 65.7 3.9 31 33-63 3-33 (169)
298 COG5271 MDN1 AAA ATPase contai 98.0 4.5E-05 9.8E-10 77.8 10.1 175 33-237 890-1093(4600)
299 PRK06067 flagellar accessory p 98.0 6.1E-05 1.3E-09 63.4 9.8 39 27-65 21-62 (234)
300 PF03266 NTPase_1: NTPase; In 98.0 1.4E-05 3E-10 63.9 5.4 23 33-55 1-23 (168)
301 PLN03210 Resistant to P. syrin 98.0 0.00021 4.5E-09 73.5 15.2 28 30-57 206-233 (1153)
302 COG0703 AroK Shikimate kinase 98.0 6.9E-06 1.5E-10 65.2 3.5 32 32-63 3-34 (172)
303 PRK14532 adenylate kinase; Pro 98.0 8.5E-06 1.9E-10 66.2 4.1 30 33-62 2-31 (188)
304 KOG0480 DNA replication licens 98.0 1.2E-05 2.5E-10 74.9 5.3 129 33-190 380-544 (764)
305 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 8.8E-06 1.9E-10 65.7 4.0 28 34-61 2-29 (183)
306 PF13479 AAA_24: AAA domain 97.9 2.7E-05 5.9E-10 64.7 7.0 61 31-96 3-82 (213)
307 COG1241 MCM2 Predicted ATPase 97.9 6.8E-06 1.5E-10 78.2 3.7 63 33-95 321-396 (682)
308 PRK09376 rho transcription ter 97.9 0.00019 4.2E-09 64.3 12.4 23 34-56 172-194 (416)
309 PRK13948 shikimate kinase; Pro 97.9 1.3E-05 2.8E-10 64.9 4.6 35 29-63 8-42 (182)
310 PRK14531 adenylate kinase; Pro 97.9 1.2E-05 2.6E-10 65.2 4.3 31 32-62 3-33 (183)
311 TIGR03499 FlhF flagellar biosy 97.9 6.3E-05 1.4E-09 65.2 9.0 36 31-66 194-234 (282)
312 cd01121 Sms Sms (bacterial rad 97.9 5.4E-05 1.2E-09 68.0 8.8 69 27-95 78-171 (372)
313 TIGR02012 tigrfam_recA protein 97.9 4.3E-05 9.4E-10 67.1 8.0 70 27-96 51-147 (321)
314 PRK06217 hypothetical protein; 97.9 1.2E-05 2.5E-10 65.2 4.1 31 33-63 3-33 (183)
315 COG3283 TyrR Transcriptional r 97.9 0.00017 3.7E-09 63.3 11.3 156 33-218 229-426 (511)
316 cd02021 GntK Gluconate kinase 97.9 1.2E-05 2.6E-10 62.8 3.9 28 34-61 2-29 (150)
317 KOG2228 Origin recognition com 97.9 7.1E-05 1.5E-09 65.1 8.8 132 30-190 48-221 (408)
318 PTZ00202 tuzin; Provisional 97.9 0.00066 1.4E-08 61.7 15.0 36 30-65 285-320 (550)
319 cd00227 CPT Chloramphenicol (C 97.9 1.2E-05 2.6E-10 64.6 3.6 33 32-64 3-35 (175)
320 cd01428 ADK Adenylate kinase ( 97.9 1.4E-05 3.1E-10 65.0 4.0 29 34-62 2-30 (194)
321 cd00544 CobU Adenosylcobinamid 97.9 0.00014 3E-09 58.2 9.5 63 34-96 2-87 (169)
322 PRK11823 DNA repair protein Ra 97.9 6.8E-05 1.5E-09 69.1 8.7 70 27-96 76-170 (446)
323 cd02020 CMPK Cytidine monophos 97.8 1.6E-05 3.4E-10 61.5 3.8 30 34-63 2-31 (147)
324 TIGR01313 therm_gnt_kin carboh 97.8 1.5E-05 3.3E-10 63.1 3.7 27 34-60 1-27 (163)
325 PRK14530 adenylate kinase; Pro 97.8 1.9E-05 4E-10 65.7 4.4 30 33-62 5-34 (215)
326 COG1102 Cmk Cytidylate kinase 97.8 1.6E-05 3.5E-10 62.0 3.6 29 34-62 3-31 (179)
327 PRK12608 transcription termina 97.8 0.00039 8.4E-09 62.1 12.6 23 33-55 135-157 (380)
328 PRK04841 transcriptional regul 97.8 0.00047 1E-08 69.1 14.8 167 17-217 17-226 (903)
329 COG3284 AcoR Transcriptional a 97.8 9.2E-05 2E-09 69.2 8.9 155 32-217 337-533 (606)
330 COG3267 ExeA Type II secretory 97.8 0.0005 1.1E-08 57.8 12.3 162 28-217 47-246 (269)
331 cd01128 rho_factor Transcripti 97.8 0.00026 5.7E-09 60.1 10.9 27 31-57 16-42 (249)
332 PRK05057 aroK shikimate kinase 97.8 2.3E-05 5E-10 62.9 4.3 34 31-64 4-37 (172)
333 PRK06696 uridine kinase; Valid 97.8 5.6E-05 1.2E-09 63.2 6.7 41 31-71 22-65 (223)
334 PRK06762 hypothetical protein; 97.8 3E-05 6.4E-10 61.6 4.6 33 31-63 2-34 (166)
335 PRK13946 shikimate kinase; Pro 97.8 2.2E-05 4.7E-10 63.7 3.9 33 31-63 10-42 (184)
336 TIGR03878 thermo_KaiC_2 KaiC d 97.8 9E-05 1.9E-09 63.5 7.7 39 27-65 32-73 (259)
337 PF13245 AAA_19: Part of AAA d 97.8 4.8E-05 1E-09 52.4 4.8 33 33-65 12-51 (76)
338 PRK03731 aroL shikimate kinase 97.8 2.9E-05 6.2E-10 62.0 4.3 32 32-63 3-34 (171)
339 cd03283 ABC_MutS-like MutS-lik 97.8 0.00015 3.3E-09 59.6 8.6 67 26-92 20-115 (199)
340 PRK06547 hypothetical protein; 97.8 3.6E-05 7.9E-10 61.7 4.8 34 30-63 14-47 (172)
341 PF06309 Torsin: Torsin; Inte 97.8 5.4E-05 1.2E-09 57.0 5.4 22 34-55 56-77 (127)
342 PLN02200 adenylate kinase fami 97.8 3.5E-05 7.6E-10 64.9 4.7 35 31-67 43-77 (234)
343 cd00983 recA RecA is a bacter 97.8 9.2E-05 2E-09 65.1 7.4 70 27-96 51-147 (325)
344 PF13086 AAA_11: AAA domain; P 97.8 1.8E-05 3.8E-10 65.9 2.8 22 34-55 20-41 (236)
345 PRK14528 adenylate kinase; Pro 97.7 3E-05 6.6E-10 63.0 4.1 30 33-62 3-32 (186)
346 PTZ00088 adenylate kinase 1; P 97.7 2.8E-05 6.2E-10 65.2 3.9 31 33-63 8-38 (229)
347 TIGR01360 aden_kin_iso1 adenyl 97.7 3.1E-05 6.8E-10 62.5 4.1 30 33-62 5-34 (188)
348 TIGR01351 adk adenylate kinase 97.7 3E-05 6.5E-10 64.2 3.9 29 34-62 2-30 (210)
349 PRK02496 adk adenylate kinase; 97.7 3.2E-05 6.8E-10 62.6 3.8 30 33-62 3-32 (184)
350 TIGR00767 rho transcription te 97.7 0.00078 1.7E-08 60.7 12.7 25 32-56 169-193 (415)
351 PRK00279 adk adenylate kinase; 97.7 3.8E-05 8.3E-10 63.8 4.0 29 34-62 3-31 (215)
352 PRK14737 gmk guanylate kinase; 97.7 0.00015 3.4E-09 58.8 7.4 25 31-55 4-28 (186)
353 PRK14527 adenylate kinase; Pro 97.7 3.6E-05 7.8E-10 62.7 3.6 32 30-61 5-36 (191)
354 cd00046 DEXDc DEAD-like helica 97.7 0.00019 4.1E-09 54.1 7.5 23 33-55 2-24 (144)
355 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00013 2.8E-09 60.6 7.0 22 32-53 30-51 (213)
356 PRK05703 flhF flagellar biosyn 97.7 0.00029 6.2E-09 64.5 9.8 36 31-66 221-261 (424)
357 PF13191 AAA_16: AAA ATPase do 97.7 5E-05 1.1E-09 61.0 4.3 38 30-67 23-63 (185)
358 PRK13695 putative NTPase; Prov 97.7 0.00028 6E-09 56.6 8.6 23 33-55 2-24 (174)
359 PRK11889 flhF flagellar biosyn 97.7 0.00051 1.1E-08 61.7 10.9 35 31-65 241-278 (436)
360 COG1936 Predicted nucleotide k 97.7 3.4E-05 7.3E-10 61.0 3.0 30 33-63 2-31 (180)
361 PRK04040 adenylate kinase; Pro 97.7 5.4E-05 1.2E-09 61.6 4.3 29 31-59 2-32 (188)
362 COG0563 Adk Adenylate kinase a 97.7 4.7E-05 1E-09 61.4 3.9 28 33-60 2-29 (178)
363 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00016 3.5E-09 60.7 7.3 51 27-77 15-74 (235)
364 cd02019 NK Nucleoside/nucleoti 97.6 8.8E-05 1.9E-09 50.0 4.6 22 34-55 2-23 (69)
365 COG4178 ABC-type uncharacteriz 97.6 0.00016 3.5E-09 68.0 7.7 28 28-55 416-443 (604)
366 PLN02674 adenylate kinase 97.6 0.00011 2.5E-09 62.0 6.1 31 31-61 31-61 (244)
367 PF13238 AAA_18: AAA domain; P 97.6 4.1E-05 8.9E-10 57.6 3.1 22 34-55 1-22 (129)
368 PRK04296 thymidine kinase; Pro 97.6 0.00035 7.6E-09 56.9 8.6 30 33-62 4-36 (190)
369 TIGR00150 HI0065_YjeE ATPase, 97.6 7.3E-05 1.6E-09 57.2 4.1 30 29-58 20-49 (133)
370 PRK09354 recA recombinase A; P 97.6 0.00027 5.9E-09 62.7 8.3 40 27-66 56-98 (349)
371 PRK10867 signal recognition pa 97.6 0.00087 1.9E-08 61.4 11.8 38 30-67 99-140 (433)
372 PRK01184 hypothetical protein; 97.6 5.9E-05 1.3E-09 61.0 3.8 29 33-62 3-31 (184)
373 PF00406 ADK: Adenylate kinase 97.6 4.8E-05 1E-09 59.5 3.1 26 36-61 1-26 (151)
374 smart00072 GuKc Guanylate kina 97.6 0.00028 6E-09 57.2 7.7 24 32-55 3-26 (184)
375 PLN02199 shikimate kinase 97.6 0.00014 3.1E-09 62.8 6.0 33 31-63 102-134 (303)
376 COG3854 SpoIIIAA ncharacterize 97.6 0.00023 4.9E-09 59.0 6.8 24 32-55 138-161 (308)
377 PF10236 DAP3: Mitochondrial r 97.6 0.0016 3.6E-08 57.1 12.6 46 169-214 258-307 (309)
378 PRK09361 radB DNA repair and r 97.6 0.00024 5.1E-09 59.4 6.9 39 27-65 19-60 (225)
379 cd01394 radB RadB. The archaea 97.6 0.00022 4.7E-09 59.3 6.5 39 27-65 15-56 (218)
380 PRK04182 cytidylate kinase; Pr 97.5 8.4E-05 1.8E-09 59.5 4.0 29 33-61 2-30 (180)
381 cd01393 recA_like RecA is a b 97.5 0.0005 1.1E-08 57.3 8.7 52 27-78 15-75 (226)
382 PF05970 PIF1: PIF1-like helic 97.5 0.00027 6E-09 63.5 7.5 28 30-57 21-48 (364)
383 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00023 5E-09 56.0 6.2 29 28-56 22-50 (157)
384 PRK14526 adenylate kinase; Pro 97.5 9.2E-05 2E-09 61.4 4.0 28 34-61 3-30 (211)
385 PF00519 PPV_E1_C: Papillomavi 97.5 0.00021 4.6E-09 63.5 6.3 63 27-95 258-320 (432)
386 PHA02530 pseT polynucleotide k 97.5 0.00011 2.3E-09 64.2 4.3 30 32-61 3-33 (300)
387 PF06745 KaiC: KaiC; InterPro 97.5 0.00013 2.9E-09 60.9 4.7 41 26-66 14-58 (226)
388 TIGR00416 sms DNA repair prote 97.5 0.00046 1E-08 63.8 8.6 69 27-95 90-183 (454)
389 TIGR02238 recomb_DMC1 meiotic 97.5 0.00036 7.8E-09 61.3 7.5 53 27-79 92-153 (313)
390 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.3E-09 59.7 3.9 29 32-60 3-31 (186)
391 TIGR01069 mutS2 MutS2 family p 97.5 0.00063 1.4E-08 66.8 9.9 23 32-54 323-345 (771)
392 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00017 3.6E-09 60.9 5.3 41 26-66 16-59 (237)
393 TIGR02173 cyt_kin_arch cytidyl 97.5 0.00011 2.4E-09 58.4 3.9 29 34-62 3-31 (171)
394 PF13521 AAA_28: AAA domain; P 97.5 8.3E-05 1.8E-09 58.9 3.1 26 34-60 2-27 (163)
395 PRK08233 hypothetical protein; 97.5 0.00014 3E-09 58.4 4.4 33 33-65 5-38 (182)
396 TIGR00959 ffh signal recogniti 97.5 0.0026 5.7E-08 58.2 13.1 37 31-67 99-139 (428)
397 PRK15455 PrkA family serine pr 97.5 0.00018 3.8E-09 67.4 5.5 33 31-63 103-136 (644)
398 TIGR02858 spore_III_AA stage I 97.5 0.00047 1E-08 59.3 7.8 25 32-56 112-136 (270)
399 cd03216 ABC_Carb_Monos_I This 97.5 0.00017 3.6E-09 57.3 4.7 28 28-55 23-50 (163)
400 cd01124 KaiC KaiC is a circadi 97.5 0.00017 3.7E-09 58.1 4.8 32 34-65 2-36 (187)
401 KOG0477 DNA replication licens 97.5 0.00016 3.4E-09 67.5 4.9 120 33-172 484-629 (854)
402 COG0467 RAD55 RecA-superfamily 97.5 0.0002 4.2E-09 61.3 5.3 42 26-67 18-62 (260)
403 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0005 1.1E-08 55.4 7.4 67 28-94 22-101 (177)
404 TIGR02236 recomb_radA DNA repa 97.4 0.00039 8.4E-09 61.1 7.1 47 27-73 91-146 (310)
405 PF06431 Polyoma_lg_T_C: Polyo 97.4 0.00036 7.7E-09 61.5 6.6 124 27-173 151-284 (417)
406 cd02027 APSK Adenosine 5'-phos 97.4 0.00018 3.9E-09 56.3 4.4 30 34-63 2-34 (149)
407 PRK00409 recombination and DNA 97.4 0.00083 1.8E-08 66.1 9.9 22 33-54 329-350 (782)
408 PF01745 IPT: Isopentenyl tran 97.4 0.00016 3.5E-09 59.2 4.2 35 34-68 4-38 (233)
409 PRK12724 flagellar biosynthesi 97.4 0.003 6.4E-08 57.4 12.4 36 31-66 223-262 (432)
410 COG1419 FlhF Flagellar GTP-bin 97.4 0.00058 1.2E-08 61.2 7.8 62 31-92 203-291 (407)
411 PLN03187 meiotic recombination 97.4 0.0006 1.3E-08 60.6 7.8 53 27-79 122-183 (344)
412 PLN02459 probable adenylate ki 97.4 0.00019 4.1E-09 61.1 4.4 29 33-61 31-59 (261)
413 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00034 7.3E-09 54.4 5.5 66 28-94 23-100 (144)
414 PRK12339 2-phosphoglycerate ki 97.4 0.0002 4.4E-09 58.7 4.4 29 31-59 3-31 (197)
415 TIGR01613 primase_Cterm phage/ 97.4 0.00097 2.1E-08 58.4 8.9 66 28-93 73-139 (304)
416 PRK12727 flagellar biosynthesi 97.4 0.00081 1.7E-08 62.6 8.5 25 31-55 350-374 (559)
417 PRK05541 adenylylsulfate kinas 97.4 0.00018 3.9E-09 57.7 3.8 27 30-56 6-32 (176)
418 PRK04220 2-phosphoglycerate ki 97.4 0.0004 8.6E-09 60.3 6.1 30 29-58 90-119 (301)
419 TIGR03574 selen_PSTK L-seryl-t 97.4 0.0002 4.4E-09 60.8 4.3 31 34-64 2-35 (249)
420 cd03243 ABC_MutS_homologs The 97.4 0.00073 1.6E-08 55.5 7.5 24 30-53 28-51 (202)
421 TIGR02768 TraA_Ti Ti-type conj 97.4 0.00098 2.1E-08 65.3 9.5 64 32-95 369-452 (744)
422 COG2874 FlaH Predicted ATPases 97.4 0.001 2.2E-08 54.5 7.9 36 20-55 15-52 (235)
423 PRK04301 radA DNA repair and r 97.4 0.00052 1.1E-08 60.5 6.9 41 27-67 98-147 (317)
424 TIGR01448 recD_rel helicase, p 97.4 0.0012 2.6E-08 64.5 9.9 24 32-55 339-362 (720)
425 PRK14529 adenylate kinase; Pro 97.4 0.00015 3.3E-09 60.4 3.3 28 33-60 2-29 (223)
426 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00082 1.8E-08 56.2 7.5 62 31-92 31-120 (222)
427 PRK04328 hypothetical protein; 97.3 0.00034 7.5E-09 59.5 5.3 40 27-66 19-61 (249)
428 PRK00889 adenylylsulfate kinas 97.3 0.00034 7.3E-09 56.1 5.0 34 31-64 4-40 (175)
429 TIGR01420 pilT_fam pilus retra 97.3 0.00074 1.6E-08 60.2 7.6 27 30-56 121-147 (343)
430 TIGR02655 circ_KaiC circadian 97.3 0.0011 2.3E-08 62.0 8.8 39 27-65 259-300 (484)
431 PF02562 PhoH: PhoH-like prote 97.3 0.0011 2.4E-08 54.5 7.8 24 32-55 20-43 (205)
432 cd03284 ABC_MutS1 MutS1 homolo 97.3 0.0011 2.5E-08 55.1 8.1 22 32-53 31-52 (216)
433 PTZ00494 tuzin-like protein; P 97.3 0.012 2.7E-07 53.6 14.9 47 21-67 385-431 (664)
434 PF00437 T2SE: Type II/IV secr 97.3 0.00058 1.3E-08 58.7 6.5 63 31-93 127-208 (270)
435 TIGR00064 ftsY signal recognit 97.3 0.00084 1.8E-08 57.9 7.4 37 31-67 72-111 (272)
436 PF06414 Zeta_toxin: Zeta toxi 97.3 0.00023 5E-09 58.4 3.8 39 30-68 14-53 (199)
437 PRK13889 conjugal transfer rel 97.3 0.0014 3E-08 65.6 9.7 63 33-95 364-446 (988)
438 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.00083 1.8E-08 55.1 7.0 21 32-52 29-49 (200)
439 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.00044 9.6E-09 57.9 5.4 39 27-65 16-57 (229)
440 TIGR02322 phosphon_PhnN phosph 97.3 0.00022 4.7E-09 57.3 3.4 25 33-57 3-27 (179)
441 PRK12338 hypothetical protein; 97.3 0.00028 6E-09 61.8 4.2 29 31-59 4-32 (319)
442 PRK10416 signal recognition pa 97.3 0.00059 1.3E-08 60.1 6.3 35 31-65 114-151 (318)
443 PRK13808 adenylate kinase; Pro 97.3 0.00024 5.3E-09 62.6 3.8 29 34-62 3-31 (333)
444 COG4088 Predicted nucleotide k 97.3 0.00018 4E-09 58.5 2.8 23 34-56 4-26 (261)
445 cd02022 DPCK Dephospho-coenzym 97.3 0.00029 6.2E-09 56.8 4.0 29 34-63 2-30 (179)
446 PF09848 DUF2075: Uncharacteri 97.3 0.00052 1.1E-08 61.4 6.0 23 33-55 3-25 (352)
447 PRK05480 uridine/cytidine kina 97.3 0.00047 1E-08 56.9 5.4 37 31-67 6-43 (209)
448 PRK08533 flagellar accessory p 97.3 0.00051 1.1E-08 57.7 5.6 39 27-65 20-61 (230)
449 cd04177 RSR1 RSR1 subgroup. R 97.3 0.0012 2.6E-08 52.2 7.5 23 33-55 3-25 (168)
450 smart00487 DEXDc DEAD-like hel 97.3 0.001 2.3E-08 53.1 7.1 24 32-55 25-49 (201)
451 PTZ00035 Rad51 protein; Provis 97.3 0.001 2.2E-08 59.2 7.5 52 27-78 114-174 (337)
452 cd02028 UMPK_like Uridine mono 97.2 0.00037 8.1E-09 56.2 4.2 36 34-69 2-40 (179)
453 cd00984 DnaB_C DnaB helicase C 97.2 0.00057 1.2E-08 57.6 5.4 40 27-66 9-52 (242)
454 PF04665 Pox_A32: Poxvirus A32 97.2 0.0032 6.8E-08 53.1 9.7 44 143-189 128-171 (241)
455 PLN02165 adenylate isopentenyl 97.2 0.00036 7.7E-09 61.4 4.1 33 33-65 45-77 (334)
456 COG1119 ModF ABC-type molybden 97.2 0.0021 4.6E-08 53.8 8.4 29 27-55 53-81 (257)
457 smart00173 RAS Ras subfamily o 97.2 0.0019 4.1E-08 50.6 8.0 21 34-54 3-23 (164)
458 PF02367 UPF0079: Uncharacteri 97.2 0.00037 8.1E-09 52.5 3.6 31 29-59 13-43 (123)
459 PRK14730 coaE dephospho-CoA ki 97.2 0.00036 7.8E-09 57.1 3.9 31 33-63 3-33 (195)
460 PRK12337 2-phosphoglycerate ki 97.2 0.0012 2.5E-08 60.5 7.5 29 30-58 254-282 (475)
461 PRK09825 idnK D-gluconate kina 97.2 0.00046 9.9E-09 55.6 4.4 27 32-58 4-30 (176)
462 PRK08356 hypothetical protein; 97.2 0.00039 8.5E-09 56.8 4.0 31 33-66 7-37 (195)
463 cd02024 NRK1 Nicotinamide ribo 97.2 0.00037 8E-09 56.6 3.8 32 34-67 2-34 (187)
464 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.00068 1.5E-08 56.6 5.5 40 27-66 12-54 (224)
465 COG4133 CcmA ABC-type transpor 97.2 0.0017 3.6E-08 52.3 7.3 35 21-55 16-52 (209)
466 PF01583 APS_kinase: Adenylyls 97.2 0.00059 1.3E-08 53.6 4.7 36 32-67 3-41 (156)
467 PF08433 KTI12: Chromatin asso 97.2 0.00066 1.4E-08 58.4 5.4 63 34-96 4-84 (270)
468 cd02023 UMPK Uridine monophosp 97.2 0.00055 1.2E-08 56.0 4.7 35 34-68 2-37 (198)
469 TIGR02655 circ_KaiC circadian 97.2 0.00056 1.2E-08 63.8 5.3 39 27-65 17-59 (484)
470 PRK14021 bifunctional shikimat 97.2 0.00043 9.4E-09 65.4 4.5 32 33-64 8-39 (542)
471 PRK14974 cell division protein 97.2 0.0012 2.7E-08 58.5 7.1 35 31-65 140-177 (336)
472 PRK00091 miaA tRNA delta(2)-is 97.2 0.00052 1.1E-08 60.1 4.7 34 32-65 5-38 (307)
473 PF00448 SRP54: SRP54-type pro 97.2 0.0023 5.1E-08 52.4 8.3 25 31-55 1-25 (196)
474 KOG3354 Gluconate kinase [Carb 97.2 0.00041 8.8E-09 53.9 3.5 40 33-74 14-53 (191)
475 KOG0481 DNA replication licens 97.2 0.00023 5E-09 65.0 2.4 63 33-95 366-441 (729)
476 PF01443 Viral_helicase1: Vira 97.2 0.00031 6.7E-09 58.7 3.1 22 34-55 1-22 (234)
477 PF00485 PRK: Phosphoribulokin 97.2 0.00034 7.3E-09 57.2 3.2 23 34-56 2-24 (194)
478 cd03115 SRP The signal recogni 97.2 0.00062 1.4E-08 54.4 4.7 34 34-67 3-39 (173)
479 cd04160 Arfrp1 Arfrp1 subfamil 97.2 0.0023 4.9E-08 50.4 7.9 23 33-55 1-23 (167)
480 TIGR00235 udk uridine kinase. 97.1 0.00058 1.2E-08 56.4 4.6 25 33-57 8-32 (207)
481 cd00071 GMPK Guanosine monopho 97.1 0.00044 9.5E-09 53.3 3.6 25 34-58 2-26 (137)
482 PRK00300 gmk guanylate kinase; 97.1 0.00044 9.6E-09 56.8 3.8 27 30-56 4-30 (205)
483 COG0529 CysC Adenylylsulfate k 97.1 0.00098 2.1E-08 53.0 5.5 37 31-67 23-62 (197)
484 PF10662 PduV-EutP: Ethanolami 97.1 0.00088 1.9E-08 51.7 5.1 23 33-55 3-25 (143)
485 PLN03186 DNA repair protein RA 97.1 0.0017 3.7E-08 57.8 7.6 53 27-79 119-180 (342)
486 PRK12726 flagellar biosynthesi 97.1 0.0014 3.1E-08 58.7 7.0 38 30-67 205-245 (407)
487 PRK06761 hypothetical protein; 97.1 0.0005 1.1E-08 59.3 4.1 32 32-63 4-35 (282)
488 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0023 5.1E-08 54.9 8.1 62 32-93 81-160 (264)
489 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0016 3.4E-08 53.8 6.8 22 32-53 30-51 (204)
490 cd04119 RJL RJL (RabJ-Like) su 97.1 0.0018 3.8E-08 50.7 6.9 22 33-54 2-23 (168)
491 KOG0058 Peptide exporter, ABC 97.1 0.0008 1.7E-08 64.0 5.5 28 28-55 491-518 (716)
492 cd04138 H_N_K_Ras_like H-Ras/N 97.1 0.0028 6.1E-08 49.2 7.9 22 33-54 3-24 (162)
493 TIGR01425 SRP54_euk signal rec 97.1 0.0011 2.5E-08 60.4 6.4 37 31-67 100-139 (429)
494 COG4608 AppF ABC-type oligopep 97.1 0.0011 2.5E-08 56.2 5.9 27 30-56 38-64 (268)
495 smart00534 MUTSac ATPase domai 97.1 0.0019 4.2E-08 52.3 7.2 19 34-52 2-20 (185)
496 TIGR03263 guanyl_kin guanylate 97.1 0.00042 9.2E-09 55.6 3.2 25 33-57 3-27 (180)
497 cd04137 RheB Rheb (Ras Homolog 97.1 0.0024 5.2E-08 51.0 7.6 23 32-54 2-24 (180)
498 COG2274 SunT ABC-type bacterio 97.1 0.0016 3.4E-08 63.3 7.6 28 28-55 496-523 (709)
499 PRK11545 gntK gluconate kinase 97.1 0.00044 9.6E-09 54.9 3.2 26 37-62 1-26 (163)
500 PF08423 Rad51: Rad51; InterP 97.1 0.0032 6.8E-08 53.8 8.6 49 27-75 34-91 (256)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-44 Score=305.41 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=191.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
++++++|.+.++.+|.+|++|..+|+.||+|+|||||||||||.+|+|+|+..++.|+.+..+.+. +..-++++
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999876 34557788
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.-+. .||||||||||+++..+.+...+. +.+.++++-+||+.|||+... .++-||++||+++
T Consensus 237 F~lArekaPsIIFiDEIDAIg~kR~d~~t~g-------------DrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 237 FELAREKAPSIIFIDEIDAIGAKRFDSGTSG-------------DREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHHHhhcCCeEEEEechhhhhcccccCCCCc-------------hHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 87664 699999999999988665544332 478899999999999999765 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH-------cCCCHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM-------RNEAPEFA 226 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~-------~~~~~~~~ 226 (266)
.|||||+|||||+..|+||+|+.+.|.+||+.|..+....-..+++.++.. .++|+++|..+|. +.+.....
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeec
Confidence 999999999999999999999999999999999999877767777777775 5699999999983 34455556
Q ss_pred HHHHHHHHHhhhhh
Q 024550 227 LSGLIEFLESKKRA 240 (266)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (266)
.+++.+++++....
T Consensus 382 ~~DF~~Av~KV~~~ 395 (406)
T COG1222 382 MEDFLKAVEKVVKK 395 (406)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666665543
No 2
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-43 Score=306.41 Aligned_cols=234 Identities=65% Similarity=1.086 Sum_probs=212.0
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc
Q 024550 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT 80 (266)
Q Consensus 1 l~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (266)
||++.|++|++++..|+..++||.+.|.++.+|+|||||||||||+++.|+|+.++..++.++.+....+..++.++...
T Consensus 205 Md~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t 284 (457)
T KOG0743|consen 205 MDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT 284 (457)
T ss_pred cChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
+..+||+|+|||+-+..+.+........ +......++++|||.+||+++.++...|||+|||+.+.|||||
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~---------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPAL 355 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENF---------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPAL 355 (457)
T ss_pred CCCcEEEEeecccccccccccccccccc---------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhh
Confidence 9999999999998876444433221110 0023457999999999999999999999999999999999999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC-CCcHHHHHHHhhcCCCCHHHHHHHHHcCC-CHHHHHHHHHHHHHhhh
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAE-HPLFVEIEKLIATAKVTPADVAEQLMRNE-APEFALSGLIEFLESKK 238 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~s~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~ 238 (266)
+||||++++|+|+.++.++.+.++..|++... ..+..+++.+......|||++++.++.+. +++.+++.+++++++.+
T Consensus 356 lRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743|consen 356 LRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKK 435 (457)
T ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999975 88899999999999999999999999877 89999999999999998
Q ss_pred hhccc
Q 024550 239 RANDG 243 (266)
Q Consensus 239 ~~~~~ 243 (266)
....+
T Consensus 436 ~~~~~ 440 (457)
T KOG0743|consen 436 EKRNK 440 (457)
T ss_pred hhhcc
Confidence 76433
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=288.80 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|.++++.+..++.++..|.++|+.+|+|||||||||||||++|+++|++.+.+|+.+....+. ++..++++
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999988776 46779999
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.++. .|||+|+||||.+...|+..+ .+...+++++||+.|||+-.. .+++|||+||+|+
T Consensus 520 F~kAR~~aP~IiFfDEiDsi~~~R~g~~----------------~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd 581 (693)
T KOG0730|consen 520 FRKARQVAPCIIFFDEIDALAGSRGGSS----------------SGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPD 581 (693)
T ss_pred HHHHhhcCCeEEehhhHHhHhhccCCCc----------------cchHHHHHHHHHHHccccccc--CcEEEEeccCChh
Confidence 99886 489999999999988554221 144578999999999998654 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.||+||+|||||+..|++|+||.+.|.+|++.++.+.......++..++.. .+||++||.++|.
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 999999999999999999999999999999999999877777788888875 5699999999984
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-38 Score=278.88 Aligned_cols=195 Identities=27% Similarity=0.380 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
|.|+++. .+++||+.|..|.++|=..|+||||+||||||||.|||++|.+.++||+..+.+.+. +...++++|
T Consensus 311 EAK~ELe-EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF 389 (752)
T KOG0734|consen 311 EAKQELE-EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLF 389 (752)
T ss_pred HHHHHHH-HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHH
Confidence 4555554 489999999999999999999999999999999999999999999999999998874 467889999
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..++ .||||||||||.+.+.+...+. -....++++||..||++..+ .++|||++||.|+.
T Consensus 390 ~aAk~~APcIIFIDEiDavG~kR~~~~~----------------~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 390 AAAKARAPCIIFIDEIDAVGGKRNPSDQ----------------HYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred HHHHhcCCeEEEEechhhhcccCCccHH----------------HHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 8775 5999999999999875543332 24578999999999999776 57999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
||+||.|||||+++|.+|.||...|.+|+..|+.+....-..+..-++.. .+||++|++|++
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999988755545555556664 679999999988
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-37 Score=276.14 Aligned_cols=197 Identities=22% Similarity=0.356 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
++++.++..+++.++++++.|..+|+..|.|||||||||||||.+|+|+|++.|.+|+.+....+. ++..++.+
T Consensus 517 ~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~v 596 (802)
T KOG0733|consen 517 EEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQV 596 (802)
T ss_pred HHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999988765 35678899
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|||||+||+|.|++.++.... ....+++|+||..|||+..+ .++.||++||+|+
T Consensus 597 FqRAR~saPCVIFFDEiDaL~p~R~~~~s----------------~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPD 658 (802)
T KOG0733|consen 597 FQRARASAPCVIFFDEIDALVPRRSDEGS----------------SVSSRVVNQLLTELDGLEER--RGVYVIAATNRPD 658 (802)
T ss_pred HHHhhcCCCeEEEecchhhcCcccCCCCc----------------hhHHHHHHHHHHHhcccccc--cceEEEeecCCCc
Confidence 98764 6999999999999987765442 34478999999999999776 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH--HHHHHHhhc---CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF--VEIEKLIAT---AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~---~~~s~~~i~~~l 217 (266)
.+|||++|||||+..++++.|+.++|..|++.+.+..+.++. .+++.++.. .+||++|++.++
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 999999999999999999999999999999999986544443 345566654 579999999887
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=267.67 Aligned_cols=206 Identities=23% Similarity=0.313 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHHHH
Q 024550 6 KKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILIA 79 (266)
Q Consensus 6 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~~~ 79 (266)
..++.+. ..++.+++.|..+|+.||+|+|||||||||||+||+++|+++++||+.+++..+. ++..++++|..
T Consensus 199 ~~el~~l-i~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~ 277 (802)
T KOG0733|consen 199 LAELCEL-IIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ 277 (802)
T ss_pred HHHHHHH-HHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH
Confidence 3444444 4458999999999999999999999999999999999999999999999988776 36789999999
Q ss_pred cc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC--CCceEEEEecCCCCC
Q 024550 80 TE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC--GDERIIIFTTNHKER 155 (266)
Q Consensus 80 ~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~ivi~ttn~~~~ 155 (266)
+. .|||+||||||.+.+.+..... .-..+++.+||..||++.... +.+|+||+|||+|+.
T Consensus 278 A~~~aPcivFiDeIDAI~pkRe~aqr----------------eMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 278 AKSNAPCIVFIDEIDAITPKREEAQR----------------EMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred HhccCCeEEEeecccccccchhhHHH----------------HHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 86 4999999999999987766443 233679999999999876553 467999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHcCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMRNEAPEFALSGL 230 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~~~~~~~~~~~~ 230 (266)
||++|.|+|||+..|.+..|+..+|.+|++.+.........-++..++.. .+|-++|+..++ ++....+++++
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~--~~Aa~vAikR~ 415 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALC--REAAFVAIKRI 415 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHH--HHHHHHHHHHH
Confidence 99999999999999999999999999999999987766666667777663 569999998887 22344444443
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=240.43 Aligned_cols=200 Identities=30% Similarity=0.442 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
-+|+++.+.+..+|.+.++|.+.|+.||+|+|+|||||||||+|++++|+.....|+.+..+.+. ++..+++.|
T Consensus 162 ~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvf 241 (408)
T KOG0727|consen 162 VQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 241 (408)
T ss_pred hhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999998876 456678888
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
.-++ .|+|+||||+|.+... +++.... .+.+.+.++-+||+.|+++... .++-+|++||+.+.
T Consensus 242 rlakenapsiifideidaiatk--rfdaqtg-----------adrevqril~ellnqmdgfdq~--~nvkvimatnradt 306 (408)
T KOG0727|consen 242 RLAKENAPSIIFIDEIDAIATK--RFDAQTG-----------ADREVQRILIELLNQMDGFDQT--TNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCCcEEEeehhhhHhhh--hcccccc-----------ccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcccc
Confidence 6664 5899999999999763 3333322 2467788999999999999765 67999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
+||+|+||||++..|+||.|+..+++-+|..+.++.......+++.++.. ...|+++|..+|.
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 99999999999999999999999999999999888877777788887776 4599999998873
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=273.06 Aligned_cols=218 Identities=29% Similarity=0.396 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
++.|++|++ ++.||+.|+.|.++|...|+|+||+||||||||.||+|+|.+.|+||+.++.+++. ..+.++++
T Consensus 317 deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l 395 (774)
T KOG0731|consen 317 DEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL 395 (774)
T ss_pred HHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH
Confidence 467788777 68999999999999999999999999999999999999999999999999999886 46778999
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..++ .|||+||||||.+...+... .....+.+...++++||..||++... .++||+++||+++
T Consensus 396 f~~ar~~aP~iifideida~~~~r~G~------------~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 396 FPLARKNAPSIIFIDEIDAVGRKRGGK------------GTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPD 461 (774)
T ss_pred HHHhhccCCeEEEeccccccccccccc------------ccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCcc
Confidence 98876 49999999999997644310 01122466688999999999999665 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhh-cCCCCHHHHHHHHH-------cCCCHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHP-LFVEIEKLIA-TAKVTPADVAEQLM-------RNEAPEF 225 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~-~~~~s~~~i~~~l~-------~~~~~~~ 225 (266)
.||+||+|||||+..|.++.|+...|..|+..++...... ...++..++. ..+|+++||++++. ++.....
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999877654 3445555555 46799999999872 2334444
Q ss_pred HHHHHHHHHH
Q 024550 226 ALSGLIEFLE 235 (266)
Q Consensus 226 ~~~~~~~~~~ 235 (266)
...++..+++
T Consensus 542 ~~~~~~~a~~ 551 (774)
T KOG0731|consen 542 GTKDLEYAIE 551 (774)
T ss_pred chhhHHHHHH
Confidence 5556666666
No 9
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-34 Score=232.85 Aligned_cols=199 Identities=26% Similarity=0.365 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
.+.++|.+-+..+.++|++|..+|+..|+|+|||||||||||.+++++|....+.|+.++.+.+. +...++++|
T Consensus 154 ~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelf 233 (404)
T KOG0728|consen 154 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELF 233 (404)
T ss_pred HHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999998876 234567777
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. .|+|+|+||||++...+.+.+.. .+.+.+.+.-+|||.++++-.+ .++-+|++||+.+-
T Consensus 234 vmarehapsiifmdeidsigs~r~e~~~g-------------gdsevqrtmlellnqldgfeat--knikvimatnridi 298 (404)
T KOG0728|consen 234 VMAREHAPSIIFMDEIDSIGSSRVESGSG-------------GDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDI 298 (404)
T ss_pred HHHHhcCCceEeeecccccccccccCCCC-------------ccHHHHHHHHHHHHhccccccc--cceEEEEecccccc
Confidence 6664 59999999999998755443322 2466788889999999999655 67999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
||+||+||||++..|+||.|+.+.|.+|++.+..+....-..++..++.+ .+.|++++...|
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhh
Confidence 99999999999999999999999999999988877654444566666665 568899988877
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=258.41 Aligned_cols=200 Identities=25% Similarity=0.372 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|++|++-+..+|+++++|.. |+.++.|||||||||||||.+|+|+|.++...|+.+...++. ++.+++++
T Consensus 678 eevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~V 756 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREV 756 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHH
Confidence 57999999999999999999875 788889999999999999999999999999999999987765 57889999
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.+++ .|||||+||+|++++.|.+.+.+ .+-..+++++||.+||++.......++||++||+|+
T Consensus 757 FerAR~A~PCVIFFDELDSlAP~RG~sGDS--------------GGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 757 FERARSAAPCVIFFDELDSLAPNRGRSGDS--------------GGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhhccCCeEEEeccccccCccCCCCCCc--------------cccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99986 59999999999999866554422 245578999999999999876778899999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCH-HHHHHHHHHhhCCCCCCcHHHHHHHhhc--CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTP-SGFKMLASNYLGIAEHPLFVEIEKLIAT--AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~--~~~s~~~i~~~l 217 (266)
.|||+|+|||||+.-+++..++. +.+..+++....+....-..++.+++.+ ..||++|+-.+|
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999977765 5567888877777666656667777775 569999998876
No 11
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=228.99 Aligned_cols=188 Identities=21% Similarity=0.336 Sum_probs=162.5
Q ss_pred HHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHcc--
Q 024550 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIATE-- 81 (266)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~-- 81 (266)
-..+..||..|+.|..|. |+++|||||||||||++|+++|++.++|++.+.+..+.+ ...+++++..+.
T Consensus 133 crli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~ 209 (368)
T COG1223 133 CRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKA 209 (368)
T ss_pred HHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455889999999999988 789999999999999999999999999999999988763 355777777765
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccccc
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALL 161 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~ 161 (266)
.|||+||||+|.++-.+..... .++...++|.||..||+..++ .+++.|++||+|+.||+++.
T Consensus 210 aPcivFiDE~DAiaLdRryQel---------------RGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQEL---------------RGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHh---------------cccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcCHHHH
Confidence 5999999999999875544332 255678999999999999755 67999999999999999999
Q ss_pred CCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc
Q 024550 162 RPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMR 219 (266)
Q Consensus 162 r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~ 219 (266)
+ ||...|+|.+|+.++|.+|++.|......+....+..+++. -++|++||.+.++.
T Consensus 273 s--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 273 S--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred h--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9 99999999999999999999999999888877777777775 45999999987753
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=247.35 Aligned_cols=201 Identities=27% Similarity=0.399 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+.+|+++.+.+..++.++++|..+|+++|+|+|||||||||||++++++|+.++.+++.+.++.+. +...+..+
T Consensus 151 ~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~l 230 (398)
T PTZ00454 151 DIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDV 230 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999876553 23446666
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..|+||||||+|.++..+..... ..+......+..+++.++++... .+++||+|||+++
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~-------------~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQT-------------GADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccC-------------CccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 6554 46899999999999763321110 01133456778888888877543 5689999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+|++++|||||+..|+|+.|+.++|..||+.++...+.....++..++.. .+||++||..++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999987655544556666654 5799999999883
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=231.88 Aligned_cols=199 Identities=25% Similarity=0.337 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
.+.+++.+.++.++.+++.|..+|+.||+|+|+|||||||||.+||++|...+..|+.+....+. +..-+++.|
T Consensus 178 kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAF 257 (424)
T KOG0652|consen 178 KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF 257 (424)
T ss_pred HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999998887766554 223356666
Q ss_pred HHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
.-+ +.|+|+||||+|.+...+.....+. +.+.++++-+|||.++++.+. ..+-||++||+.+-
T Consensus 258 aLAKEkaP~IIFIDElDAIGtKRfDSek~G-------------DREVQRTMLELLNQLDGFss~--~~vKviAATNRvDi 322 (424)
T KOG0652|consen 258 ALAKEKAPTIIFIDELDAIGTKRFDSEKAG-------------DREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVDI 322 (424)
T ss_pred HHhhccCCeEEEEechhhhccccccccccc-------------cHHHHHHHHHHHHhhcCCCCc--cceEEEeecccccc
Confidence 555 4699999999999987554433322 467788999999999999665 67999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcC-CCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATA-KVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~s~~~i~~~l 217 (266)
|||+|+|+||++..|+||.|+.+.|..|++.+..+........+++++..+ .|++++...+|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 999999999999999999999999999999999888777777777787754 48888877666
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=234.88 Aligned_cols=200 Identities=29% Similarity=0.379 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++.++|.+.+..+|.+|++|...|+.||+|++|||+||||||.||+++|+.....|+.+-.+.+. ++.-++++
T Consensus 191 e~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 191 ESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999998887765 24456677
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.-+. .|+|+||||||++...+=+..+. ...+.++++-+|||.++++.++ ..+-||++||+.+
T Consensus 271 F~vA~e~apSIvFiDEIdAiGtKRyds~Sg-------------gerEiQrtmLELLNQldGFdsr--gDvKvimATnrie 335 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-------------GEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIE 335 (440)
T ss_pred HHHHHhcCCceEEeehhhhhccccccCCCc-------------cHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccc
Confidence 76553 69999999999997643222111 1356677888999999999776 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
.|||+|+||||++..|+|+.||...+++||..+.+.....-...++.++. +..+|++||..+|
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAic 399 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAIC 399 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHH
Confidence 99999999999999999999999999999998887765444455655554 5679999999887
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-32 Score=249.75 Aligned_cols=199 Identities=27% Similarity=0.381 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
++.|.++.+ ++.||+.|..|..+|...|+|+||+||||||||+||+++|.+.++||+.++.+++. +.+.++++
T Consensus 156 dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdL 234 (596)
T COG0465 156 DEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 234 (596)
T ss_pred HHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHH
Confidence 456777666 78999999999999999999999999999999999999999999999999999886 46788999
Q ss_pred HHHccc--CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATEN--KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~~--~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+.+ |||+||||||.+...+... ....+.+.+.+++++|..||++..+ .+++++++||+|+
T Consensus 235 F~qAkk~aP~IIFIDEiDAvGr~Rg~g-------------~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpd 299 (596)
T COG0465 235 FEQAKKNAPCIIFIDEIDAVGRQRGAG-------------LGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPD 299 (596)
T ss_pred HHHhhccCCCeEEEehhhhcccccCCC-------------CCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcc
Confidence 998864 9999999999997633221 1122455678999999999999643 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
-+|+||+|||||+..|.++.||...|.+|++.+..........++..++.. .+|+++++.+++
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 999999999999999999999999999999988877655544555555553 579999999998
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=1.6e-31 Score=240.59 Aligned_cols=223 Identities=25% Similarity=0.331 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++++.+.+..++.++..|..+|+.+++++|||||||||||++|+++|++++.+++.++++.+.. ...++.+
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 216 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVREL 216 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999887642 3445666
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|+||||||+|.++..+...... ........+..++..+++.... .+++||+|||+++
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~-------------~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~ 281 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAAKRTDSGTS-------------GDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRID 281 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhcccccCCCC-------------ccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChh
Confidence 76553 58999999999997643221110 0123345666777777776433 4689999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc-------CCCHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMR-------NEAPEFA 226 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~-------~~~~~~~ 226 (266)
.+|++++|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+|+++||..++.. .......
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~ 361 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVT 361 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 999999999999999999999999999999999876654433445555553 56999999988742 2223345
Q ss_pred HHHHHHHHHhhhhh
Q 024550 227 LSGLIEFLESKKRA 240 (266)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (266)
.+++.++++..+..
T Consensus 362 ~~d~~~A~~~~~~~ 375 (389)
T PRK03992 362 MEDFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHHHHhcc
Confidence 56666666655443
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=231.20 Aligned_cols=197 Identities=22% Similarity=0.286 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC-----hhhHH-HH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG-----NNDLR-HI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~-----~~~l~-~~ 76 (266)
++.|+-+.++++.++..|++|+-+-. |.+|+|++||||||||+||+|+|.+++..|+.|+.+.+.+ ...+. -+
T Consensus 218 ~~AK~lL~EAVvlPi~mPe~F~Girr-PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlL 296 (491)
T KOG0738|consen 218 HEAKKLLKEAVVLPIWMPEFFKGIRR-PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLL 296 (491)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhccc-ccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHH
Confidence 46788899999999999999986444 5579999999999999999999999999999999998874 23444 44
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC--CceEEEEecCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG--DERIIIFTTNH 152 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~~ivi~ttn~ 152 (266)
|..+. .|++|||||||.|+..+... ...+...+..++||..|||...... ..|+|+++||.
T Consensus 297 FemARfyAPStIFiDEIDslcs~RG~s---------------~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 297 FEMARFYAPSTIFIDEIDSLCSQRGGS---------------SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred HHHHHHhCCceeehhhHHHHHhcCCCc---------------cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 44443 59999999999999755332 1235667889999999998754432 23778899999
Q ss_pred CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 153 KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 153 ~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
|+.||.||+| ||...|++|+|+.+.|..+++..+..........++.++.. .+||++||.++|
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 9999999999 99999999999999999999999987655555566666665 569999999998
No 18
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-31 Score=227.50 Aligned_cols=212 Identities=21% Similarity=0.297 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhC-CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh------hhHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN------NDLRH 75 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~------~~l~~ 75 (266)
+++++++++.+..++.++++|...+ ..+++|||||||||||||++|+++|++.|.+|+.++.+.+++. ..+..
T Consensus 98 e~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~A 177 (386)
T KOG0737|consen 98 EEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKA 177 (386)
T ss_pred HHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHH
Confidence 4688999999999999999997443 5578999999999999999999999999999999999988742 22344
Q ss_pred HHHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC
Q 024550 76 ILIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK 153 (266)
Q Consensus 76 ~~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~ 153 (266)
+|.-+. +|+||||||+|.+.+.+... +.+....+.++|...+||+....+..++|+|+||+|
T Consensus 178 vFslAsKl~P~iIFIDEvds~L~~R~s~----------------dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 178 VFSLASKLQPSIIFIDEVDSFLGQRRST----------------DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred HHhhhhhcCcceeehhhHHHHHhhcccc----------------hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 444443 69999999999998866221 235567788899999999998877789999999999
Q ss_pred CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHcCCCHHHHHHHHHH
Q 024550 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMRNEAPEFALSGLIE 232 (266)
Q Consensus 154 ~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~~~~~~~~~~~~~~ 232 (266)
..+|.|++| |+...++++.|+..+|.+|++-++..+......++.+++.. .|||+.||.++| ...++..+.+
T Consensus 242 ~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC-----~~Aa~~~ire 314 (386)
T KOG0737|consen 242 FDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC-----RLAALRPIRE 314 (386)
T ss_pred ccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH-----HHHhHhHHHH
Confidence 999999999 99999999999999999999999999887777777777775 569999999998 6777788888
Q ss_pred HHHhh
Q 024550 233 FLESK 237 (266)
Q Consensus 233 ~~~~~ 237 (266)
.++..
T Consensus 315 ~~~~~ 319 (386)
T KOG0737|consen 315 LLVSE 319 (386)
T ss_pred HHHhc
Confidence 87775
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=241.26 Aligned_cols=213 Identities=24% Similarity=0.330 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|+.+.+-+..+-+-+..|....++.+.|||||||||||||++|.++|..++..|+.+....+. ++..++.+
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l 752 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL 752 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence 467888888888899999999999999999999999999999999999999999999999877665 46789999
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|||||+||+|++++.|...+ .+-..+.++++|..|||.-. -.++.|+|+|.+|+
T Consensus 753 F~rA~~a~PCiLFFDEfdSiAPkRGhDs----------------TGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 753 FERAQSAKPCILFFDEFDSIAPKRGHDS----------------TGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPD 814 (952)
T ss_pred HHHhhccCCeEEEeccccccCcccCCCC----------------CCchHHHHHHHHHhhccccc--cceEEEEEecCCcc
Confidence 98875 699999999999988553322 24557899999999998733 36799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHcCCCHHHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMRNEAPEFALSGLIEF 233 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~~~~~~~~~~~~~~~ 233 (266)
.+||||+||||++..++.+.|+..+|.+|+...........+.+++-++.. .+||++|+..++. ..-+..+-+|
T Consensus 815 liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~-----~A~l~avh~~ 889 (952)
T KOG0735|consen 815 LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY-----NAQLAAVHEI 889 (952)
T ss_pred ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH-----HHHHHHHHHH
Confidence 999999999999999999999999999999987776666666777777775 5699999999883 3334455555
Q ss_pred HHhhh
Q 024550 234 LESKK 238 (266)
Q Consensus 234 ~~~~~ 238 (266)
+.+..
T Consensus 890 l~~~~ 894 (952)
T KOG0735|consen 890 LKRED 894 (952)
T ss_pred HHhcC
Confidence 55544
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=220.85 Aligned_cols=199 Identities=24% Similarity=0.299 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
++...+.+-+..++.+++.|-.+|+.||+|+|+|||||||||..||++|+..+.-|+.+-.+.+. +...++++|
T Consensus 184 eqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf 263 (435)
T KOG0729|consen 184 EQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF 263 (435)
T ss_pred HHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHH
Confidence 56677888899999999999999999999999999999999999999999999999999988776 234567888
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. ..|++|+||||.+.+.+-... ...+.+.+.++-++++.|+++..+ .++-++++||+|+.
T Consensus 264 ~martkkaciiffdeidaiggarfddg-------------~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpdt 328 (435)
T KOG0729|consen 264 EMARTKKACIIFFDEIDAIGGARFDDG-------------AGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPDT 328 (435)
T ss_pred HHhcccceEEEEeeccccccCccccCC-------------CCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCCC
Confidence 7764 579999999999987442221 123466788888999999999766 56899999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
|||+|+||||++..++|..|+.+.|..|++.+.......-....+.++.- ..-|+++|..++
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvc 391 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVC 391 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHH
Confidence 99999999999999999999999999999988877655544444333332 237888888877
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=234.15 Aligned_cols=199 Identities=28% Similarity=0.384 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (266)
++++++.+.+..++.++.+|..+|+.+++++|||||||||||++|+++|++++.+++.+..+.+.. ...+..+|
T Consensus 190 ~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF 269 (438)
T PTZ00361 190 QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELF 269 (438)
T ss_pred HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHH
Confidence 567888888889999999999999999999999999999999999999999999999998877642 23356666
Q ss_pred HHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+ ..|+||||||||.++..+...... ........+..+++.++++... .++.||+|||+++.
T Consensus 270 ~~A~~~~P~ILfIDEID~l~~kR~~~~sg-------------g~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 270 RVAEENAPSIVFIDEIDAIGTKRYDATSG-------------GEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred HHHHhCCCcEEeHHHHHHHhccCCCCCCc-------------ccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 554 368999999999997533211110 0123345667788888877543 46899999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
+|++++|||||+..|+|+.|+.++|.+||+.++.........++..++. ..++|+++|..++
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999987765444445555554 4579999999887
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.4e-30 Score=241.73 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|.++.+ +..++.++..|...|..+++|+|||||||||||++++++|++++.+++.++++.+. +...+..+
T Consensus 61 ~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~ 139 (495)
T TIGR01241 61 DEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 139 (495)
T ss_pred HHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHH
Confidence 456666665 56679999999999999999999999999999999999999999999999987653 34567788
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|+||||||+|.++..+..... ..+.....+++.++..|+++... .+++||+|||+++
T Consensus 140 f~~a~~~~p~Il~iDEid~l~~~r~~~~~-------------~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~~ 204 (495)
T TIGR01241 140 FEQAKKNAPCIIFIDEIDAVGRQRGAGLG-------------GGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRPD 204 (495)
T ss_pred HHHHHhcCCCEEEEechhhhhhccccCcC-------------CccHHHHHHHHHHHhhhccccCC--CCeEEEEecCChh
Confidence 87763 5899999999999864432100 01123356788899999987554 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc-------CCCHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMR-------NEAPEFA 226 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~-------~~~~~~~ 226 (266)
.+|++++|||||+..|+++.|+.++|.+|++.++.........++..++.. .+||++||.+++.. .......
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999977654444556666665 45999999988742 1233345
Q ss_pred HHHHHHHHHhhh
Q 024550 227 LSGLIEFLESKK 238 (266)
Q Consensus 227 ~~~~~~~~~~~~ 238 (266)
.+++..+++...
T Consensus 285 ~~~l~~a~~~~~ 296 (495)
T TIGR01241 285 MNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2e-30 Score=250.72 Aligned_cols=198 Identities=25% Similarity=0.345 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|+.+.+.+..++..+..|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++.+. ++..++.+
T Consensus 459 ~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~ 538 (733)
T TIGR01243 459 EEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREI 538 (733)
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999987654 24567888
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|+||||||+|.+++.+.... ........++.|+..|++.... .+++||+|||+|+
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~~---------------~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~ 601 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGARF---------------DTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPD 601 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCCC---------------CccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChh
Confidence 87764 589999999999986332111 0123356888899999987543 5799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|++++|||||+..|+++.|+.++|.+||+.+..........++..++.. .+||++||.+++
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999988876654444556666664 469999999877
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.3e-30 Score=235.99 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=155.4
Q ss_pred HHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHHHHc--ccCCeeeeecchhh
Q 024550 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILIAT--ENKSILVVEDIDCC 94 (266)
Q Consensus 23 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~~~~--~~~~vl~iDeid~l 94 (266)
...+|+++++|+|||||||||||++|+++|++++.+++.++++.+. +...++.+|..+ ..||||||||||.+
T Consensus 251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 4567999999999999999999999999999999999999987654 245677787654 46999999999998
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~ 174 (266)
+..+... .+......+++.++..|+.. ..+++||+|||+++.||++++|+|||+..|+++.
T Consensus 331 ~~~~~~~---------------~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~l 391 (489)
T CHL00195 331 FSNSESK---------------GDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDL 391 (489)
T ss_pred hccccCC---------------CCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCC
Confidence 7522111 11233456677777777643 3569999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhCCCCCCc--HHHHHHHhhc-CCCCHHHHHHHHHc------CCCHHHHHHHHHHHHHhhhhhc
Q 024550 175 CTPSGFKMLASNYLGIAEHPL--FVEIEKLIAT-AKVTPADVAEQLMR------NEAPEFALSGLIEFLESKKRAN 241 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~-~~~s~~~i~~~l~~------~~~~~~~~~~~~~~~~~~~~~~ 241 (266)
|+.++|.+||+.++....... ..++..++.. .+||++||.+++.. .+......+++..+++.....+
T Consensus 392 P~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 392 PSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred cCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCc
Confidence 999999999999998754321 3455666664 57999999988743 2334456677777777776653
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=235.74 Aligned_cols=198 Identities=29% Similarity=0.411 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
++.|+.+.+.+..++..++.|...++.+++|+|||||||||||++|+++|.+++.+|+.+..+++.+ +..++.+
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~ 327 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL 327 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999887663 5678899
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||+|.++..++.... .....++++++..|++.... .++++|+|||+|+
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~----------------~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~ 389 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSED----------------GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPD 389 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCc----------------hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCcc
Confidence 98876 6999999999999874432211 12257899999999987554 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc--HHHHHHHhh-cCCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL--FVEIEKLIA-TAKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~-~~~~s~~~i~~~l~ 218 (266)
.+|++++|||||+..|+|+.|+..+|.+||..++......+ ..++..++. ..+|+++||..++.
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998665432 334455555 45699999999883
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.7e-30 Score=233.46 Aligned_cols=194 Identities=27% Similarity=0.390 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCc----------EEEEeCCccc----
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD----------VYDLELSNLL---- 68 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~----------~~~i~~~~~~---- 68 (266)
+++++++.+.+..++.++++|..+|+++++|+|||||||||||++++++|+.++.+ |+.+....+.
T Consensus 188 ~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyv 267 (512)
T TIGR03689 188 DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYV 267 (512)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccccc
Confidence 35778899999999999999999999999999999999999999999999998654 3334433332
Q ss_pred --ChhhHHHHHHHcc------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC
Q 024550 69 --GNNDLRHILIATE------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC 140 (266)
Q Consensus 69 --~~~~l~~~~~~~~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 140 (266)
+...++.+|..+. .++||||||+|.++..+.... +......+++.|++.|+++...
T Consensus 268 Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---------------s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 268 GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---------------SSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---------------cchHHHHHHHHHHHHhcccccC-
Confidence 1234556665442 589999999999986432110 0112245778999999988554
Q ss_pred CCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 141 GDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 141 ~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+++||+|||+++.||++++|||||+..|+|+.|+.++|.+||+.++... .++..+ +....+++.+++..++
T Consensus 332 -~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~---l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 332 -DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDAD---LAEFDGDREATAAALI 403 (512)
T ss_pred -CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHH---HHHhcCCCHHHHHHHH
Confidence 56999999999999999999999999999999999999999999998653 233333 3334566666666554
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=1e-29 Score=252.71 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=138.3
Q ss_pred CHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh----------------------------
Q 024550 19 RKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN---------------------------- 70 (266)
Q Consensus 19 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~---------------------------- 70 (266)
.+....++|..+|+|+||+||||||||+||+++|.++++||+.++++++...
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 3456678899999999999999999999999999999999999998776521
Q ss_pred ---------------------hhHHHHHHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhh
Q 024550 71 ---------------------NDLRHILIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLS 127 (266)
Q Consensus 71 ---------------------~~l~~~~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (266)
..++.+|..+ ..||||||||||.++.. .....+++
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~----------------------ds~~ltL~ 1755 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN----------------------ESNYLSLG 1755 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC----------------------ccceehHH
Confidence 0145566655 46999999999999751 11123578
Q ss_pred hhhhhhhccccC-CCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH---HHHHHHh
Q 024550 128 GLLNFIDGLWSS-CGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF---VEIEKLI 203 (266)
Q Consensus 128 ~ll~~l~~~~~~-~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~---~~~~~l~ 203 (266)
.|++.|++.... ...+++||||||+|+.|||||+|||||+..|+++.|+.++|.+++...+...+..+. .++..++
T Consensus 1756 qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA 1835 (2281)
T CHL00206 1756 LLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFG 1835 (2281)
T ss_pred HHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHH
Confidence 899999976432 235799999999999999999999999999999999999999988754432222221 2345555
Q ss_pred hc-CCCCHHHHHHHH
Q 024550 204 AT-AKVTPADVAEQL 217 (266)
Q Consensus 204 ~~-~~~s~~~i~~~l 217 (266)
.. .|||++||++++
T Consensus 1836 ~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1836 SITMGSNARDLVALT 1850 (2281)
T ss_pred HhCCCCCHHHHHHHH
Confidence 54 579999999987
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=3.8e-29 Score=235.57 Aligned_cols=218 Identities=25% Similarity=0.360 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~ 77 (266)
+.++++ ..+..++..+..|..+|...++++|||||||||||++|+++|.+++.+++.++++.+. +...++.+|
T Consensus 190 ~~k~~l-~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF 268 (638)
T CHL00176 190 EAKEEF-EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLF 268 (638)
T ss_pred HHHHHH-HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHH
Confidence 455555 4467889999999999999999999999999999999999999999999999988764 234566777
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. .||||||||+|.++..+..... ..+.....+++.++..+++.... .+++||+|||+++.
T Consensus 269 ~~A~~~~P~ILfIDEID~l~~~r~~~~~-------------~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~ 333 (638)
T CHL00176 269 KKAKENSPCIVFIDEIDAVGRQRGAGIG-------------GGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI 333 (638)
T ss_pred HHHhcCCCcEEEEecchhhhhcccCCCC-------------CCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence 7654 5899999999999753321100 11233456788899999887543 56999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc-------CCCHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMR-------NEAPEFAL 227 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~-------~~~~~~~~ 227 (266)
+|++++|||||+..|+|+.|+.++|.+|++.++..........+..++.. .+||++||.+++.. ........
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~ 413 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITM 413 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999987544445566667665 45999999988732 22223345
Q ss_pred HHHHHHHHhh
Q 024550 228 SGLIEFLESK 237 (266)
Q Consensus 228 ~~~~~~~~~~ 237 (266)
+++..++.+.
T Consensus 414 ~dl~~Ai~rv 423 (638)
T CHL00176 414 KEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-30 Score=216.87 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (266)
..|+.+.+.+..+++-|.+|.-- ..|.+|||||||||||||+||+++|.+.+..|+.++.+++++ +.-+..+|
T Consensus 140 ~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLF 218 (439)
T KOG0739|consen 140 GAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLF 218 (439)
T ss_pred hHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHH
Confidence 46788899999999999988653 345579999999999999999999999999999999998873 33456777
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. .|+||||||||.+++.++.... ....++..+||..|.+.-.. ..+++|+++||-|+.
T Consensus 219 emARe~kPSIIFiDEiDslcg~r~enEs----------------easRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 219 EMARENKPSIIFIDEIDSLCGSRSENES----------------EASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHhcCCcEEEeehhhhhccCCCCCch----------------HHHHHHHHHHHHhhhccccC-CCceEEEecCCCchh
Confidence 6654 5999999999999987665543 44577889999999987543 457999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhc-CCCCHHHHHHHHHcCCCHHHHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIAT-AKVTPADVAEQLMRNEAPEFALSGLIEF 233 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~-~~~s~~~i~~~l~~~~~~~~~~~~~~~~ 233 (266)
||+|++| ||...|++|+|+...|..+|+.+++.-...+. .++..+... .+||++||.-.+ ++..++.+.+.
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV-----rDalmePvRkv 354 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV-----RDALMEPVRKV 354 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe-----hhhhhhhHHHh
Confidence 9999999 99999999999999999999999998877765 567777775 469999987554 34444444443
Q ss_pred HH
Q 024550 234 LE 235 (266)
Q Consensus 234 ~~ 235 (266)
-.
T Consensus 355 qs 356 (439)
T KOG0739|consen 355 QS 356 (439)
T ss_pred hh
Confidence 33
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-30 Score=216.19 Aligned_cols=198 Identities=27% Similarity=0.337 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
.++..++++-+..++..+.++.+.|+.+|.+++||||||||||.+++++|+.+|++++.+..+.+.+ ..-+++.
T Consensus 138 ~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRem 217 (388)
T KOG0651|consen 138 FYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDM 217 (388)
T ss_pred HHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHH
Confidence 3567788888999999999999999999999999999999999999999999999999999988763 2346777
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|||||+||||++.+.+..... ..+...+.++-.|++.|+++..- .++-+|+|||+|+
T Consensus 218 f~yA~~~~pciifmdeiDAigGRr~se~T-------------s~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpd 282 (388)
T KOG0651|consen 218 FRYAREVIPCIIFMDEIDAIGGRRFSEGT-------------SSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPD 282 (388)
T ss_pred HHHHhhhCceEEeehhhhhhccEEecccc-------------chhHHHHHHHHHHHHhhccchhc--ccccEEEecCCcc
Confidence 87765 5899999999999875522222 22467788889999999988554 5688999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCC---CCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIA---EHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.|+|+|+||||++..+++|.|+...|..|++.+-... +.-..+.+..+.. +|+++++.+.+
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~ 346 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVC 346 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhc
Confidence 9999999999999999999999999998877655433 2222344444444 58999977766
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1e-28 Score=214.32 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=131.5
Q ss_pred HHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHcc-------cCCeeeee
Q 024550 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIATE-------NKSILVVE 89 (266)
Q Consensus 23 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~-------~~~vl~iD 89 (266)
+...|+.+|++++||||||||||++|+++|+++|.+++.++..++.+ +..++++|..+. .|||||||
T Consensus 140 l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 140 LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 34468899999999999999999999999999999999999988773 467888887664 59999999
Q ss_pred cchhhHHHhHHHhhhhhcCCcccccccccccc-chhhhhhhhhhhhcc--------c--cCCCCceEEEEecCCCCCCcc
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQ-YHITLSGLLNFIDGL--------W--SSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~l~~~--------~--~~~~~~~ivi~ttn~~~~ld~ 158 (266)
|||.+++.+.... ... ...+...|++.+|+. + .....+++||+|||+|+.||+
T Consensus 220 EIDA~~g~r~~~~----------------~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 220 DLDAGAGRFGTTQ----------------YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred hhhhcCCCCCCCC----------------cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 9999987442110 111 123346788887752 2 122456899999999999999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCC
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAK 207 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 207 (266)
+|+|||||+..+ ..|+.++|.+|++.++...+.. ..++..++..+.
T Consensus 284 ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~ 329 (413)
T PLN00020 284 PLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFP 329 (413)
T ss_pred hHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCC
Confidence 999999999864 5899999999999999887544 577888877643
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=9.4e-29 Score=221.36 Aligned_cols=200 Identities=27% Similarity=0.336 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++++.+.+..++.++..|..+|+.+++|+|||||||||||++++++|+.++.+++.+....+.. ...+..+
T Consensus 128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~ 207 (364)
T TIGR01242 128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREI 207 (364)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999887665432 2234555
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..|+||||||+|.++..+..... ..+......+..++..+++.... .++.||+|||+++
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~~~~~~~~-------------~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~ 272 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAAKRTDSGT-------------SGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPD 272 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhccccccCCC-------------CccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 5544 35899999999998753321110 00123345667777777765333 4689999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|++++|||||+..|+|+.|+.++|.+|++.+..........++..++.. .+++++||..++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~ 336 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAIC 336 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999998866543332344555554 469999999886
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=4.1e-27 Score=223.71 Aligned_cols=198 Identities=24% Similarity=0.380 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHHH
Q 024550 5 MKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILI 78 (266)
Q Consensus 5 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~~ 78 (266)
.+..+ ..+..++..+..+..++...++|+||+||||||||+++++++++++.+++.++++.+. +...++.+|.
T Consensus 160 ~~~~l-~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~ 238 (644)
T PRK10733 160 AKEEV-AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFE 238 (644)
T ss_pred HHHHH-HHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHH
Confidence 34443 4466778888888888888899999999999999999999999999999999987654 2345667776
Q ss_pred Hcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 79 ATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 79 ~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
.+. .||||||||+|.++..+..... ........+++.+|..|+++... .++++|+|||+|+.+
T Consensus 239 ~a~~~~P~IifIDEiD~l~~~r~~~~~-------------g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~l 303 (644)
T PRK10733 239 QAKKAAPCIIFIDEIDAVGRQRGAGLG-------------GGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVL 303 (644)
T ss_pred HHHhcCCcEEEehhHhhhhhccCCCCC-------------CCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhhc
Confidence 653 6899999999999764322110 11233456889999999988554 569999999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
|++++|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999977654434445556554 5799999999983
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=2.6e-25 Score=215.23 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
.++++.+.+.+..++.++..|..+|+.+++++|||||||||||++++++|++++.+++.+++..+.+ ...+..+
T Consensus 184 ~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~l 263 (733)
T TIGR01243 184 KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREI 263 (733)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHH
Confidence 3567888888888999999999999999999999999999999999999999999999999876542 3456777
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++||||||+|.+++.+.... ......+++.|+..|++.... ..+++|++||+++
T Consensus 264 f~~a~~~~p~il~iDEid~l~~~r~~~~----------------~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~ 325 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAPKREEVT----------------GEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPD 325 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhcccccCCc----------------chHHHHHHHHHHHHhhccccC--CCEEEEeecCChh
Confidence 76653 579999999999976332110 011245677888888877543 5689999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|+++.|+|||+..|+++.|+.++|.+|++.+...........+..++.. .+|+++++..++
T Consensus 326 ~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 326 ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999988766543333345555553 569999998875
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-25 Score=201.89 Aligned_cols=192 Identities=26% Similarity=0.378 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHHHHH
Q 024550 6 KKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHILIA 79 (266)
Q Consensus 6 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~~~~ 79 (266)
.+.+.+.+..++..+..+...|+++|+++|+|||||||||.+++++|++.++.++.+++..+. +++.++..|..
T Consensus 193 ~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~ 272 (693)
T KOG0730|consen 193 LSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAE 272 (693)
T ss_pred HHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999999988765 45778999987
Q ss_pred cc--c-CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 80 TE--N-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 80 ~~--~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
+. + |+++||||+|.+++.+.... ....++..+++..|++.... ..+++|++||+|+.|
T Consensus 273 a~k~~~psii~IdEld~l~p~r~~~~-----------------~~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 273 ALKFQVPSIIFIDELDALCPKREGAD-----------------DVESRVVSQLLTLLDGLKPD--AKVIVLAATNRPDSL 333 (693)
T ss_pred HhccCCCeeEeHHhHhhhCCcccccc-----------------hHHHHHHHHHHHHHhhCcCc--CcEEEEEecCCcccc
Confidence 64 3 89999999999987443322 12356788889999988533 579999999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
|+++.| |||+..+++..|+..+|..|++.+..+.+.....++..++.. ++|.++|+...+
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHH
Confidence 999999 999999999999999999999999998877755666666664 779999999988
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=199.48 Aligned_cols=197 Identities=22% Similarity=0.264 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
.+.|+.+.+.++.++.+++.|..+-- +.+++||.||||||||+|++++|.+.+..|+.++++.+.+ +..++.+
T Consensus 159 ~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vral 237 (428)
T KOG0740|consen 159 EDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRAL 237 (428)
T ss_pred hhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHH
Confidence 46788999999999999999876543 4569999999999999999999999999999999998874 2345666
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.-+ .+|+|+||||+|.++..++... ......+..++|..+++.......++++|+|||.|+
T Consensus 238 f~vAr~~qPsvifidEidslls~Rs~~e----------------~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 238 FKVARSLQPSVIFIDEIDSLLSKRSDNE----------------HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred HHHHHhcCCeEEEechhHHHHhhcCCcc----------------cccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 6444 4799999999999998663322 244567888899999988887778999999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+|.+++| ||...+++|.|+.+.|..+|..++......+ ..+++.++.. .+||..||...|.
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 99999999 9999999999999999999999998885444 3677777774 5699999999884
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-26 Score=203.41 Aligned_cols=201 Identities=21% Similarity=0.360 Sum_probs=155.7
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCc-EEEEeCCccc------ChhhH
Q 024550 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD-VYDLELSNLL------GNNDL 73 (266)
Q Consensus 1 l~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~-~~~i~~~~~~------~~~~l 73 (266)
||.|.-+--++++...+-.|+...++|++.-+|+|||||||||||.+||.+.+-++.. --.++...+. ++.++
T Consensus 226 Ld~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~Nv 305 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENV 305 (744)
T ss_pred chHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHH
Confidence 4455555556777777778899999999999999999999999999999999999642 2334443332 46789
Q ss_pred HHHHHHcc----------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCc
Q 024550 74 RHILIATE----------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDE 143 (266)
Q Consensus 74 ~~~~~~~~----------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 143 (266)
+.+|..+. .-.||++||||++|..|..... +.+-...++++||..||+.-.- ++
T Consensus 306 R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g--------------~TGVhD~VVNQLLsKmDGVeqL--NN 369 (744)
T KOG0741|consen 306 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG--------------STGVHDTVVNQLLSKMDGVEQL--NN 369 (744)
T ss_pred HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC--------------CCCccHHHHHHHHHhcccHHhh--hc
Confidence 99998763 2369999999999985433221 1244567899999999988554 67
Q ss_pred eEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC----CCcHHHHHHHhhcC-CCCHHHHHHHH
Q 024550 144 RIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE----HPLFVEIEKLIATA-KVTPADVAEQL 217 (266)
Q Consensus 144 ~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~----~~~~~~~~~l~~~~-~~s~~~i~~~l 217 (266)
++||+-||+.+.+|.||+|||||..++++.+||+..|.+|++.+..... ...+.++.++++.+ .||+++|..++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 9999999999999999999999999999999999999999987776542 22234455555543 49999998877
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4e-25 Score=211.98 Aligned_cols=197 Identities=24% Similarity=0.296 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCccc------Chh
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNLL------GNN 71 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~~------~~~ 71 (266)
.++++++.+-+..+|..++.|..+++.||+|+|||||||||||+.|+++|..+. ..|+.-..++.. .+.
T Consensus 271 ~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaER 350 (1080)
T KOG0732|consen 271 ENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAER 350 (1080)
T ss_pred HHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHH
Confidence 357889999999999999999999999999999999999999999999999883 333333333322 256
Q ss_pred hHHHHHHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEe
Q 024550 72 DLRHILIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT 149 (266)
Q Consensus 72 ~l~~~~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~t 149 (266)
.+.-+|..+. +|.|+|+||||.+++.++.-- ......+++.||..|+|+..+ ..+++|+|
T Consensus 351 qlrllFeeA~k~qPSIIffdeIdGlapvrSskq----------------Eqih~SIvSTLLaLmdGldsR--gqVvvigA 412 (1080)
T KOG0732|consen 351 QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ----------------EQIHASIVSTLLALMDGLDSR--GQVVVIGA 412 (1080)
T ss_pred HHHHHHHHHhccCceEEeccccccccccccchH----------------HHhhhhHHHHHHHhccCCCCC--CceEEEcc
Confidence 6778887764 699999999999988653321 133356888999999999776 56999999
Q ss_pred cCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhc-CCCCHHHHHHHH
Q 024550 150 TNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI-EKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 150 tn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~-~~~s~~~i~~~l 217 (266)
||+|+.+|++|+|||||+..++|+.|+.+.|.+|+..+-.+...++...+ ..++.. .+|.++|+..++
T Consensus 413 TnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 413 TNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred cCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999988876665544 444443 569999977766
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=1.1e-21 Score=160.56 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=110.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDF 111 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~ 111 (266)
.++|||||||+||||||+.+|++++.++..++...+....++..++.....+.||||||||.+-...++.-....++..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence 47999999999999999999999999999999887777788888888888999999999999865444333322221111
Q ss_pred ccccccccccchhhhhhhhhhhhccccC------CCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHH
Q 024550 112 LIAGYEQQKQYHITLSGLLNFIDGLWSS------CGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLAS 185 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~ 185 (266)
..+-+.... .-.+..+|+||++...|.+.|.. ||+...++..++.++..+|+.
T Consensus 131 -------------------diiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 131 -------------------DIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp -------------------EEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHH
T ss_pred -------------------EEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHH
Confidence 000000000 00347899999999999999999 999999999999999999999
Q ss_pred HhhCCCCCCcHHHHHH-HhhcCCCCHHHHHHHH
Q 024550 186 NYLGIAEHPLFVEIEK-LIATAKVTPADVAEQL 217 (266)
Q Consensus 186 ~~~~~~~~~~~~~~~~-l~~~~~~s~~~i~~~l 217 (266)
+.....+..+.++... ++.....||+=..++|
T Consensus 190 r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 190 RSARILNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp HCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 9998888888766654 4555557776544444
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=3.3e-21 Score=147.59 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=97.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHc--cc-CCeeeeecchhhHHHhHHHhhh
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIAT--EN-KSILVVEDIDCCIELQDRLSRA 104 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~--~~-~~vl~iDeid~l~~~~~~~~~~ 104 (266)
+||+||||||||++++.+|+.++.+++.+++..+.+ ...+..+|..+ .. ++||||||+|.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~---- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP---- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST----
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc----
Confidence 689999999999999999999999999999998862 34566667665 23 799999999999863300
Q ss_pred hhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCC
Q 024550 105 RAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~ 174 (266)
.........+..+++.++..... ..+++||+|||.++.++++++| +||+..|++|.
T Consensus 77 ------------~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 ------------SSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ------------SSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ------------ccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 11234456777888888876543 3469999999999999999997 79999999874
No 41
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.2e-20 Score=153.30 Aligned_cols=170 Identities=20% Similarity=0.195 Sum_probs=128.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDF 111 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~ 111 (266)
-.+|||||||.||||+|..+|+++|+++...+...+....++..++.....+.|||||||+.+.+...+.-++..++-.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 36999999999999999999999999999999999999999999999999999999999999977555444333222111
Q ss_pred ccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCC
Q 024550 112 LIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIA 191 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~ 191 (266)
.+........ .+ ..++ =.+..+|++|.+...|...|.. ||+....+..++.++..+|+.+.....
T Consensus 133 DI~IG~gp~A--rs-----v~ld------LppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 133 DIIIGKGPAA--RS-----IRLD------LPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred EEEEccCCcc--ce-----Eecc------CCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 1000000000 00 0000 0357899999999999999999 999999999999999999999999888
Q ss_pred CCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 192 EHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 192 ~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
+..+.++. ..++.....||+ |++.|
T Consensus 198 ~i~i~~~~a~eIA~rSRGTPR-IAnRL 223 (332)
T COG2255 198 GIEIDEEAALEIARRSRGTPR-IANRL 223 (332)
T ss_pred CCCCChHHHHHHHHhccCCcH-HHHHH
Confidence 87776554 455555666665 55555
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=2.9e-19 Score=154.55 Aligned_cols=170 Identities=19% Similarity=0.285 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCc---eeEEecCCCCChHHHHHHHHHHcC-------CcEEEEeCCcccC---
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLK-------FDVYDLELSNLLG--- 69 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~---~iLl~GppGtGKT~la~ala~~~~-------~~~~~i~~~~~~~--- 69 (266)
+++|++|.+. ..++.....+...|+.++. +++|+||||||||++|+++|..+. .+++.++...+.+
T Consensus 29 ~~vK~~i~e~-~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~ 107 (287)
T CHL00181 29 APVKTRIREI-AALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI 107 (287)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence 3566666664 4555566777778876542 489999999999999999998762 3578888665432
Q ss_pred ---hhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEE
Q 024550 70 ---NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERII 146 (266)
Q Consensus 70 ---~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~iv 146 (266)
......++..+ .++||||||++.+...... .......+..|+..|+... ..++|
T Consensus 108 g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~~------------------~~~~~e~~~~L~~~me~~~----~~~~v 164 (287)
T CHL00181 108 GHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDNE------------------RDYGSEAIEILLQVMENQR----DDLVV 164 (287)
T ss_pred ccchHHHHHHHHHc-cCCEEEEEccchhccCCCc------------------cchHHHHHHHHHHHHhcCC----CCEEE
Confidence 22334455544 5689999999988531100 0112345666777776532 45677
Q ss_pred EEecCCC-----CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHH
Q 024550 147 IFTTNHK-----ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVE 198 (266)
Q Consensus 147 i~ttn~~-----~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~ 198 (266)
|++++.. -.++|+|.+ ||+..|+|+.|+.+++.+|+..++......+..+
T Consensus 165 I~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 7776532 134699999 9999999999999999999999998766555443
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.82 E-value=5.5e-19 Score=151.39 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCC---ceeEEecCCCCChHHHHHHHHHHc-------CCcEEEEeCCcccC----
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------KFDVYDLELSNLLG---- 69 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~---~~iLl~GppGtGKT~la~ala~~~-------~~~~~~i~~~~~~~---- 69 (266)
++|+.|.+. ..++.........|..++ .+++||||||||||++|+++|+.+ ..+++.++++++.+
T Consensus 13 ~vk~~i~~~-~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g 91 (261)
T TIGR02881 13 EVKALIKEI-YAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIG 91 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhcc
Confidence 456666554 455555555556676533 358999999999999999999875 24677777766543
Q ss_pred --hhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEE
Q 024550 70 --NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIII 147 (266)
Q Consensus 70 --~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi 147 (266)
...+..+|..+ .++||||||+|.|..... .......+..++..|+.. ...+++|
T Consensus 92 ~~~~~~~~~~~~a-~~~VL~IDE~~~L~~~~~-------------------~~~~~~~i~~Ll~~~e~~----~~~~~vi 147 (261)
T TIGR02881 92 HTAQKTREVIKKA-LGGVLFIDEAYSLARGGE-------------------KDFGKEAIDTLVKGMEDN----RNEFVLI 147 (261)
T ss_pred chHHHHHHHHHhc-cCCEEEEechhhhccCCc-------------------cchHHHHHHHHHHHHhcc----CCCEEEE
Confidence 23445666554 478999999998852000 011133566677777754 2345566
Q ss_pred EecCCC-----CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH
Q 024550 148 FTTNHK-----ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI 199 (266)
Q Consensus 148 ~ttn~~-----~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~ 199 (266)
+++... ..++|+|.+ ||+..|+||.++.+++.+|++.++......+.++.
T Consensus 148 la~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a 202 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred ecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH
Confidence 555432 236889999 99999999999999999999999976655554443
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=8.1e-19 Score=151.79 Aligned_cols=170 Identities=18% Similarity=0.293 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCC---CceeEEecCCCCChHHHHHHHHHHcC-------CcEEEEeCCcccC----
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLK-------FDVYDLELSNLLG---- 69 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~---~~~iLl~GppGtGKT~la~ala~~~~-------~~~~~i~~~~~~~---- 69 (266)
++|+++.+ +..++..+..+...|+.. +.+++|+||||||||++|+++|..+. .+++.+++.++..
T Consensus 29 ~vk~~i~e-~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 29 PVKTRIRE-IAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 45666655 455577777888888764 34799999999999999999998773 3688888765532
Q ss_pred --hhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEE
Q 024550 70 --NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIII 147 (266)
Q Consensus 70 --~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi 147 (266)
...+..+|..+ .++||||||++.+...... .......++.|+..|+.. ..++++|
T Consensus 108 ~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~------------------~~~~~~~~~~Ll~~le~~----~~~~~vI 164 (284)
T TIGR02880 108 HTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNE------------------RDYGQEAIEILLQVMENQ----RDDLVVI 164 (284)
T ss_pred cchHHHHHHHHHc-cCcEEEEechhhhccCCCc------------------cchHHHHHHHHHHHHhcC----CCCEEEE
Confidence 23344555554 4699999999988531100 011234566777777643 2457777
Q ss_pred EecCCC--C---CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH
Q 024550 148 FTTNHK--E---RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI 199 (266)
Q Consensus 148 ~ttn~~--~---~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~ 199 (266)
++++.. + .++|+|.+ ||...|+||.++.+++..|+..++......+..+.
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 776532 2 24899999 99999999999999999999999988665554433
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.5e-19 Score=155.22 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=106.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC-----hhhHHHHHHHc---ccCCeeeeecchhhHHHhHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG-----NNDLRHILIAT---ENKSILVVEDIDCCIELQDRL 101 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~-----~~~l~~~~~~~---~~~~vl~iDeid~l~~~~~~~ 101 (266)
|=++|+||||||||||++|+.||...|..+-.....++.. -..++.+|+=+ ..+-+|||||.|.++-.+...
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt 462 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT 462 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh
Confidence 4467999999999999999999999998876666555542 24466666533 457899999999987543322
Q ss_pred hhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHH
Q 024550 102 SRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFK 181 (266)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~ 181 (266)
- .+......+|.||-.--.. +..++++.+||+|..+|.++-. |++..|+||+|..++|.
T Consensus 463 y---------------mSEaqRsaLNAlLfRTGdq----SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERf 521 (630)
T KOG0742|consen 463 Y---------------MSEAQRSALNALLFRTGDQ----SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERF 521 (630)
T ss_pred h---------------hcHHHHHHHHHHHHHhccc----ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHH
Confidence 1 1233445566655443222 3568889999999999999999 99999999999999999
Q ss_pred HHHHHhhCCC
Q 024550 182 MLASNYLGIA 191 (266)
Q Consensus 182 ~i~~~~~~~~ 191 (266)
+|+..|+.+.
T Consensus 522 kll~lYlnky 531 (630)
T KOG0742|consen 522 KLLNLYLNKY 531 (630)
T ss_pred HHHHHHHHHH
Confidence 9999888543
No 46
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.6e-19 Score=164.03 Aligned_cols=218 Identities=17% Similarity=0.246 Sum_probs=150.0
Q ss_pred CChHHH--HHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------
Q 024550 1 MDFDMK--KMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN-------- 70 (266)
Q Consensus 1 l~~~~~--~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~-------- 70 (266)
||++|. .++.+.+.+|+....+.. -..++-+.|+||||+|||++++++|..+|..|++++...+.+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrg---s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRG---SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcc---cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce
Confidence 455554 566777777777665533 2234458899999999999999999999999999999887642
Q ss_pred -------hhHHHHHHHc-ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCC
Q 024550 71 -------NDLRHILIAT-ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGD 142 (266)
Q Consensus 71 -------~~l~~~~~~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 142 (266)
..+.+.+.+. ..+.+++|||+|.+.. ....+|...++-..+.++....+..+|+.--.+ .
T Consensus 486 TYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~-------g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-----S 553 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS-------GHQGDPASALLELLDPEQNANFLDHYLDVPVDL-----S 553 (906)
T ss_pred eeeccCChHHHHHHHhhCCCCceEEeehhhhhCC-------CCCCChHHHHHHhcChhhccchhhhccccccch-----h
Confidence 2333444444 3688999999999863 112223333334444555566666666665555 5
Q ss_pred ceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCC
Q 024550 143 ERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNEA 222 (266)
Q Consensus 143 ~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~~ 222 (266)
.++||||.|..+.+|++|+. |+ ..|+++-+..++..+|.++|+-..- ..++.---.....+-..+.. +..+++
T Consensus 554 kVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a---~~~~gl~~e~v~is~~al~~-lI~~Yc 626 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQA---LKDCGLKPEQVKISDDALLA-LIERYC 626 (906)
T ss_pred heEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHH---HHHcCCCHHhcCccHHHHHH-HHHHHH
Confidence 69999999999999999999 99 4599999999999999999984321 00110000111233333333 344667
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024550 223 PEFALSGLIEFLESKKRA 240 (266)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~ 240 (266)
.+..++.+.+.++...++
T Consensus 627 rEaGVRnLqk~iekI~Rk 644 (906)
T KOG2004|consen 627 REAGVRNLQKQIEKICRK 644 (906)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 888899888888887776
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=6.1e-18 Score=149.58 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=121.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANP 109 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~ 109 (266)
++.++|||||||||||++++++|++++..+..++...+.....+..++.....++||||||+|.+.......
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~-------- 121 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEI-------- 121 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHH--------
Confidence 355799999999999999999999999998887776665666677777777889999999999885422111
Q ss_pred ccccccccccccchhhhhhhhhhhhccc---------c-----CCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCC
Q 024550 110 DFLIAGYEQQKQYHITLSGLLNFIDGLW---------S-----SCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHC 175 (266)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~-----~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p 175 (266)
+...++... . ..-.++.+|++||++..++++|.+ ||+..+.|+.|
T Consensus 122 -------------------l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~ 180 (328)
T PRK00080 122 -------------------LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFY 180 (328)
T ss_pred -------------------HHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCC
Confidence 111111100 0 001246789999999999999999 99999999999
Q ss_pred CHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHHH
Q 024550 176 TPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l~ 218 (266)
+.+++.+|+.......+..... .+..++...+.+|+.+...+.
T Consensus 181 ~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 181 TVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 9999999999998887766654 456667777778877766663
No 48
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.78 E-value=9.2e-18 Score=139.16 Aligned_cols=190 Identities=20% Similarity=0.247 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA 79 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~ 79 (266)
+.+|+.+.+....|+... +..++||||++|||||++++++..++ |..++++.-..+..-..+...+..
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~ 103 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD 103 (249)
T ss_pred HHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc
Confidence 356777777777777553 35689999999999999999999877 788999999888877778788877
Q ss_pred cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 80 TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
.+.+-|||+||+-. .........|...|+|..+..+.+++|.+|+|+...++..
T Consensus 104 ~~~kFIlf~DDLsF--------------------------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 104 RPYKFILFCDDLSF--------------------------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred CCCCEEEEecCCCC--------------------------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh
Confidence 78899999998762 3334456778888898888888999999999975444322
Q ss_pred ccC---------------------CCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHH
Q 024550 160 LLR---------------------PGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 160 l~r---------------------~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~ 218 (266)
+.. ..||+..|.|..|+.++..+|+..++...+.....+- +....+...+.
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~--------l~~~Al~wa~~ 229 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEE--------LRQEALQWALR 229 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHHH
Confidence 211 1299999999999999999999999988776665322 22233555555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 024550 219 RNEAPEFALSGLIEFLE 235 (266)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (266)
++...-.++.++..++.
T Consensus 230 rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 230 RGGRSGRTARQFIDDLA 246 (249)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 55555555566665554
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=1e-17 Score=146.67 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=116.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPD 110 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~ 110 (266)
+.+++||||||||||++++++|++++.++..++.........+...+.....+.+|||||++.+......
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e---------- 99 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEE---------- 99 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHH----------
Confidence 4569999999999999999999999998887776655555566677777778899999999988642211
Q ss_pred cccccccccccchhhhhhhhhhhhccc--------------cCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCC
Q 024550 111 FLIAGYEQQKQYHITLSGLLNFIDGLW--------------SSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176 (266)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~ 176 (266)
.+++.++... .....++++|++||++..+++++.+ ||+..+.++.|+
T Consensus 100 -----------------~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 100 -----------------LLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred -----------------HhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 1122211100 0111347899999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 177 PSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
.+++.+++.......+.....+ +..++...+.+|+.+.+.+
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll 202 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLL 202 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHH
Confidence 9999999998887666555443 4566666666676665544
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.1e-19 Score=149.18 Aligned_cols=146 Identities=21% Similarity=0.352 Sum_probs=114.3
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccC------hhhHHHHHHHcc-----cCC--e
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLG------NNDLRHILIATE-----NKS--I 85 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~------~~~l~~~~~~~~-----~~~--v 85 (266)
+.+.+-+||+||||||||+|++++|..+ ...++++++..+.+ ...+..+|.+.. +++ .
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 3455679999999999999999999987 46788899887763 344556665432 233 4
Q ss_pred eeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCc
Q 024550 86 LVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGR 165 (266)
Q Consensus 86 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~R 165 (266)
++|||++++...|....... ...+.-+.++.+|..||.+... .++++++|+|-.+.+|-||.. |
T Consensus 254 vLIDEVESLa~aR~s~~S~~------------EpsDaIRvVNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--R 317 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRN------------EPSDAIRVVNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--R 317 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCC------------CCchHHHHHHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--H
Confidence 55999999988664332211 1245568899999999988665 569999999999999999999 9
Q ss_pred ceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 166 MDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 166 f~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
-+.+.++.+|+...+.+|++..+.
T Consensus 318 ADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 318 ADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred hhheeecCCccHHHHHHHHHHHHH
Confidence 999999999999999999987763
No 51
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.7e-18 Score=157.26 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChh---------------
Q 024550 7 KMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNN--------------- 71 (266)
Q Consensus 7 ~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~--------------- 71 (266)
..+.+.+.+||....+.... ...-++|+||||+|||+|++++|+.+|..|+.++...+.+++
T Consensus 329 ekVKeRIlEyLAV~~l~~~~---kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKL---KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred hhHHHHHHHHHHHHHHhccC---CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence 45566667777666544322 123588999999999999999999999999999999887532
Q ss_pred hHHHHHHHc-ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec
Q 024550 72 DLRHILIAT-ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT 150 (266)
Q Consensus 72 ~l~~~~~~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt 150 (266)
.+.+.+.++ ..+.|++|||||.+... ..-+|...++-..+.++.......+|+.--.+ ..|+||+|+
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~ss-------~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-----S~VmFiaTA 473 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGSS-------FRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-----SKVMFIATA 473 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccCC-------CCCChHHHHHhhcCHhhcCchhhccccCccch-----hheEEEeec
Confidence 233333333 46899999999998641 11112212222223333333333344332233 469999999
Q ss_pred CCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHH--HHh-hcCCCCHHHHHHHHHcCCCHHHHH
Q 024550 151 NHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIE--KLI-ATAKVTPADVAEQLMRNEAPEFAL 227 (266)
Q Consensus 151 n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~--~l~-~~~~~s~~~i~~~l~~~~~~~~~~ 227 (266)
|..+.+|.+|+. |+ .+|+++-++.++..+|.++|+=.. .+. .+- ....++...|..++ +.+.++..+
T Consensus 474 Nsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk------~~~~~gL~~~el~i~d~ai~~iI-~~YTREAGV 543 (782)
T COG0466 474 NSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPK------QLKEHGLKKGELTITDEAIKDII-RYYTREAGV 543 (782)
T ss_pred CccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchH------HHHHcCCCccceeecHHHHHHHH-HHHhHhhhh
Confidence 999999999999 99 569999999999999999988321 111 011 11224444444433 344555555
Q ss_pred HHHHHHHHhhhh
Q 024550 228 SGLIEFLESKKR 239 (266)
Q Consensus 228 ~~~~~~~~~~~~ 239 (266)
+.+..-+...-+
T Consensus 544 R~LeR~i~ki~R 555 (782)
T COG0466 544 RNLEREIAKICR 555 (782)
T ss_pred hHHHHHHHHHHH
Confidence 555555444433
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=4.3e-18 Score=148.54 Aligned_cols=122 Identities=28% Similarity=0.398 Sum_probs=98.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc------cCCeeeeecchhhHHHhHHHhhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATE------NKSILVVEDIDCCIELQDRLSRA 104 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~------~~~vl~iDeid~l~~~~~~~~~~ 104 (266)
-.+++|||||||||||+|+.+|..++.+|..+++... +...++.++..+. +..|||||||+.+-
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn--------- 117 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVKDLREIIEEARKNRLLGRRTILFLDEIHRFN--------- 117 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC---------
Confidence 3569999999999999999999999999999997665 5567888887763 37999999999773
Q ss_pred hhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec--CCCCCCcccccCCCcceeEEEcCCCCHHHHHH
Q 024550 105 RAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT--NHKERLDPALLRPGRMDMHINMSHCTPSGFKM 182 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt--n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~ 182 (266)
+..+..||-.++. ..+++|++| |+.-.++++|++ |+ .++.+...+.++..+
T Consensus 118 ------------------K~QQD~lLp~vE~------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~ 170 (436)
T COG2256 118 ------------------KAQQDALLPHVEN------GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKK 170 (436)
T ss_pred ------------------hhhhhhhhhhhcC------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHH
Confidence 3344567777774 347778755 455678999999 87 568999999999999
Q ss_pred HHHHhhC
Q 024550 183 LASNYLG 189 (266)
Q Consensus 183 i~~~~~~ 189 (266)
++.+.+.
T Consensus 171 ~l~ra~~ 177 (436)
T COG2256 171 LLKRALL 177 (436)
T ss_pred HHHHHHh
Confidence 9988443
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=3.1e-17 Score=159.68 Aligned_cols=132 Identities=25% Similarity=0.276 Sum_probs=96.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC---------------hhhHHHHHHHc-ccCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG---------------NNDLRHILIAT-ENKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~---------------~~~l~~~~~~~-~~~~vl~iDeid~l 94 (266)
+..++|+||||||||++|+++|+.++.+++.+++..... ...+...|..+ ..+.|++|||||.+
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~ 426 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKI 426 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhc
Confidence 346999999999999999999999999999998765432 12344455443 34569999999998
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc-----ccc------CCCCceEEEEecCCCCCCcccccCC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG-----LWS------SCGDERIIIFTTNHKERLDPALLRP 163 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~------~~~~~~ivi~ttn~~~~ld~al~r~ 163 (266)
.... .....+.|+..|+. +.. ....+++||+|||.++.++++|++
T Consensus 427 ~~~~-----------------------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~- 482 (775)
T TIGR00763 427 GSSF-----------------------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD- 482 (775)
T ss_pred CCcc-----------------------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC-
Confidence 6310 00112334444331 000 011468899999999999999999
Q ss_pred CcceeEEEcCCCCHHHHHHHHHHhh
Q 024550 164 GRMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
||. .|+|+.|+.+++.+|++.++
T Consensus 483 -R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 483 -RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred -Cee-EEecCCCCHHHHHHHHHHHH
Confidence 995 69999999999999998887
No 54
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.2e-16 Score=145.73 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=128.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHcc--cCCeeeeecchhhHHHhH
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIATE--NKSILVVEDIDCCIELQD 99 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~--~~~vl~iDeid~l~~~~~ 99 (266)
+.....+||+|+||||||++++++|+++|.++++++|.++.. +..+..+|.++. +|+|||+-++|.+...++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 334456999999999999999999999999999999998873 456778887764 799999999998863111
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhh-ccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID-GLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPS 178 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~ 178 (266)
. +.....+..+-..+. ........+++||+||+..+.+++.+.+ .|.+.|.++.|+.+
T Consensus 508 g-------------------ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~ 566 (953)
T KOG0736|consen 508 G-------------------GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEE 566 (953)
T ss_pred C-------------------chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHH
Confidence 1 111222222222222 1122234679999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 179 GFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
+|.+|++.|+.............++.+ .+|+.+++..+..
T Consensus 567 qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 567 QRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999999999987765555555566665 5699999988764
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.7e-16 Score=141.95 Aligned_cols=153 Identities=13% Similarity=0.267 Sum_probs=109.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHc------
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIAT------ 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~------ 80 (266)
++.+|||||||||||++|+.+|+.+++. +++++...-.+...++.+....
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~ 119 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG 119 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc
Confidence 4579999999999999999999998763 4455543322333444443322
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
....|++|||+|.+.. ...+.||..|+. .+..++||.+|+.+..+++++
T Consensus 120 g~~KV~IIDEah~Ls~---------------------------~A~NALLKtLEE----Pp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD---------------------------QSFNALLKTLEE----PPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CCCEEEEEechhhcCH---------------------------HHHHHHHHHhhc----CCCceEEEeecCChhhccHHH
Confidence 2356999999998742 245667777764 345688999999999999999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
++ || ..+.|..++.++..+.+++....++..... .+..++...+.++++..++|
T Consensus 169 ~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 169 LS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred Hh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 99 98 569999999999999898888777665543 33445555556666655554
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7e-16 Score=141.66 Aligned_cols=154 Identities=17% Similarity=0.278 Sum_probs=108.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++++|||||||||||++|+++|+.+++ .++.++++.-.+...++.+....
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~ 114 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPM 114 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChh
Confidence 4567999999999999999999999865 46666665433334445444332
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+.. ..++.|+..++.. +..+++|++|+.+..++++
T Consensus 115 ~~~~kVvIIDE~h~Lt~---------------------------~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK---------------------------EAFNALLKTLEEP----PSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred cCCeEEEEEEChHHhHH---------------------------HHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHH
Confidence 2357999999998842 1345667777643 3457777777778899999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ || ..+.|+.++.++...++.......+..+.. .+..++...+.+.+.+.+.+
T Consensus 164 L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~L 219 (472)
T PRK14962 164 IIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTML 219 (472)
T ss_pred Hhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 999 88 479999999999999998888766655544 34445554555555555444
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6.7e-16 Score=145.58 Aligned_cols=154 Identities=15% Similarity=0.261 Sum_probs=112.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+|||||+|||||++++.+|+.+++ .+++++..+-.+...++.++....
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~ 116 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV 116 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccc
Confidence 3567999999999999999999998865 345555543333344555555432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|+||||+|.|.. ...+.||+.|+.- +..++||.+||.+..|.+.
T Consensus 117 ~gr~KVIIIDEah~LT~---------------------------~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 117 DARFKVYMIDEVHMLTN---------------------------HAFNAMLKTLEEP----PPHVKFILATTDPQKIPVT 165 (830)
T ss_pred cCCceEEEEeChhhCCH---------------------------HHHHHHHHHHHhc----CCCeEEEEEECChhhccch
Confidence 357999999998842 2456677777753 3468899999999999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..+.|..++.++..+.+++++..++..+..+ +..++.....+.++..+++
T Consensus 166 IrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 166 VLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 99 6799999999999999999888776665443 3444444556666555553
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3e-16 Score=146.09 Aligned_cols=153 Identities=16% Similarity=0.293 Sum_probs=114.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC-----------------------------cEEEEeCCcccChhhHHHHHHHc-
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF-----------------------------DVYDLELSNLLGNNDLRHILIAT- 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~-----------------------------~~~~i~~~~~~~~~~l~~~~~~~- 80 (266)
++.+||+||+|||||++++.+|+.+++ .+++++..+-.+-..+++++...
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~ 117 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAV 117 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHH
Confidence 567999999999999999999999976 34455544333344555555442
Q ss_pred -----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 81 -----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 81 -----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
.+..|++|||+|.|.. ...|.||+.|+. .+..++||.+||.++.
T Consensus 118 ~~P~~gr~KViIIDEah~Ls~---------------------------~AaNALLKTLEE----PP~~v~FILaTtep~k 166 (700)
T PRK12323 118 YAPTAGRFKVYMIDEVHMLTN---------------------------HAFNAMLKTLEE----PPEHVKFILATTDPQK 166 (700)
T ss_pred hchhcCCceEEEEEChHhcCH---------------------------HHHHHHHHhhcc----CCCCceEEEEeCChHh
Confidence 2357999999998732 245667777664 3456899999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
|.+++++ || ..+.|+.++.++..+.+..++..++.....+ +..++...+.++++..+++
T Consensus 167 LlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 167 IPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred hhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999 98 6799999999999999888887766555443 4555666677777776665
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=2.5e-15 Score=139.34 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=110.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc--------ccCCeeeeecchhhHHHhHHHh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT--------ENKSILVVEDIDCCIELQDRLS 102 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~--------~~~~vl~iDeid~l~~~~~~~~ 102 (266)
++++|||||||||||++|+++|++++.+++.+++++......+..+.... ..+.+|+|||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~------ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG------ 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc------
Confidence 67899999999999999999999999999999998776544444443322 2467999999998853
Q ss_pred hhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc-cccCCCcceeEEEcCCCCHHHHH
Q 024550 103 RARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP-ALLRPGRMDMHINMSHCTPSGFK 181 (266)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~-al~r~~Rf~~~i~~~~p~~~~~~ 181 (266)
.........+++.++. .+..+|+++|.+..++. .+.+ |+ ..|.|+.|+..++.
T Consensus 113 -----------------~~d~~~~~aL~~~l~~------~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~ 166 (482)
T PRK04195 113 -----------------NEDRGGARAILELIKK------AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIV 166 (482)
T ss_pred -----------------ccchhHHHHHHHHHHc------CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHH
Confidence 1111233455555553 23456678888887776 5665 55 67999999999999
Q ss_pred HHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 182 MLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 182 ~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.++..++...+.... ..+..++...+...+.+.+.|
T Consensus 167 ~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 167 PVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999998877766554 445555655555555554444
No 60
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=2.4e-15 Score=128.88 Aligned_cols=128 Identities=23% Similarity=0.196 Sum_probs=91.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHH---------------------------------HHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLR---------------------------------HILI 78 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~---------------------------------~~~~ 78 (266)
..+||+||||||||++|+++|..+|.+++.+++..-.....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4699999999999999999999999999999887543322110 1112
Q ss_pred HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-c-----------CCCCceEE
Q 024550 79 ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-S-----------SCGDERII 146 (266)
Q Consensus 79 ~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~-----------~~~~~~iv 146 (266)
....+.+|+|||++.+.+ .+.+.|+..|+... . ....+..+
T Consensus 102 A~~~g~~lllDEi~r~~~---------------------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv 154 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP---------------------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV 154 (262)
T ss_pred HHHcCCEEEEcchhhCCH---------------------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence 234578999999997643 23344444443211 0 01135678
Q ss_pred EEecCCC-----CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 147 IFTTNHK-----ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 147 i~ttn~~-----~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
|+|+|.. ..++++|++ || ..+.++.|+.++..+|+...++
T Consensus 155 IaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 155 IFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred EEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 9999975 356899999 98 6799999999999999998764
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=8.3e-16 Score=129.17 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=102.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAAN 108 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 108 (266)
..++||||||||||+|++++|+++ +....+++..... ......+....+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~------------ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG------------ 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhhHHHHhhcccCCEEEEeChhhhcC------------
Confidence 358999999999999999999986 3445555543221 11224455566778999999998753
Q ss_pred CccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc---ccccCCCcceeEEEcCCCCHHHHHHHHH
Q 024550 109 PDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD---PALLRPGRMDMHINMSHCTPSGFKMLAS 185 (266)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld---~al~r~~Rf~~~i~~~~p~~~~~~~i~~ 185 (266)
.......+..+++.+. .. +..+++++++..|..++ +.|.++.+++..+.++.|+.+++.+|++
T Consensus 106 ----------~~~~~~~l~~l~n~~~---~~-~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 106 ----------NEEWELAIFDLFNRIK---EQ-GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred ----------ChHHHHHHHHHHHHHH---Hc-CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 1111223334444332 21 12234455556666554 7899844556789999999999999999
Q ss_pred HhhCCCCCCcHHHHH-HHhhcCCCCHHHHHHHH
Q 024550 186 NYLGIAEHPLFVEIE-KLIATAKVTPADVAEQL 217 (266)
Q Consensus 186 ~~~~~~~~~~~~~~~-~l~~~~~~s~~~i~~~l 217 (266)
+.....+..+.++.. .++....-+.+.+...+
T Consensus 172 ~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGIELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 888766666655544 44555556666666554
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=2.5e-16 Score=152.57 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=98.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHHcc--cCCeeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIATE--NKSILVVE 89 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~~~--~~~vl~iD 89 (266)
...+++||||||||||++++++|..+ +..++.+++..+... ..+..++..+. .++|||||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 35679999999999999999999987 778899887766532 46777777653 48899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-----CCCcccccCCC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-----ERLDPALLRPG 164 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-----~~ld~al~r~~ 164 (266)
|+|.+.+..... .......+.|...+.. ..+.+|++||.. -..|++|.|
T Consensus 282 Eih~l~~~g~~~------------------~~~~~~~~~L~~~l~~------g~i~~IgaTt~~e~~~~~~~d~al~r-- 335 (731)
T TIGR02639 282 EIHTIVGAGATS------------------GGSMDASNLLKPALSS------GKLRCIGSTTYEEYKNHFEKDRALSR-- 335 (731)
T ss_pred cHHHHhccCCCC------------------CccHHHHHHHHHHHhC------CCeEEEEecCHHHHHHHhhhhHHHHH--
Confidence 999997522110 0001122333344432 468899999863 346999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
||. .|+++.|+.+++.+|++.....
T Consensus 336 Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 336 RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 996 6999999999999999866643
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.5e-15 Score=141.71 Aligned_cols=154 Identities=14% Similarity=0.246 Sum_probs=114.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+||+||||||||++|+++|+.+++ .++.++.++-.+...++.++...
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~ 115 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT 115 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhh
Confidence 3578999999999999999999999865 45566655444445566665543
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.|.. ...+.|+..|+.- +..+.||.+|+.+..+++.
T Consensus 116 ~gk~KV~IIDEVh~LS~---------------------------~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 116 QGRFKVYLIDEVHMLST---------------------------HSFNALLKTLEEP----PEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred cCCcEEEEEechHhcCH---------------------------HHHHHHHHHHhcC----CCCcEEEEEECChHhhhHH
Confidence 2357999999998742 2445677777643 3457788888888888999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|..++.++..+.+.+.+..++..... .+..++...+.+.+++.+.+
T Consensus 165 IlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLL 220 (702)
T PRK14960 165 VIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLT 220 (702)
T ss_pred HHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998 88 669999999999999999998887766654 44556666667777776664
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=2.7e-15 Score=145.32 Aligned_cols=132 Identities=22% Similarity=0.224 Sum_probs=94.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChh---------------hHHHHHHHcc-cCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNN---------------DLRHILIATE-NKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~---------------~l~~~~~~~~-~~~vl~iDeid~l 94 (266)
...++|+||||||||++++.+|..++.+++.+++....... .+...+.... .+.|++|||+|.+
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~ 428 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKM 428 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhc
Confidence 34699999999999999999999999999999887654321 2222333332 4679999999988
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc-----cc------CCCCceEEEEecCCCCCCcccccCC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL-----WS------SCGDERIIIFTTNHKERLDPALLRP 163 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~------~~~~~~ivi~ttn~~~~ld~al~r~ 163 (266)
.... .....+.|+..++.- .. ..-.+++||+|+|.. .++++|++
T Consensus 429 ~~~~-----------------------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~- 483 (784)
T PRK10787 429 SSDM-----------------------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD- 483 (784)
T ss_pred cccc-----------------------CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc-
Confidence 5411 011233444444420 00 011468999999987 59999999
Q ss_pred CcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 164 GRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
||. .|.++.++.++..+|+++++-
T Consensus 484 -R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 484 -RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred -cee-eeecCCCCHHHHHHHHHHhhh
Confidence 995 699999999999999999983
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.8e-15 Score=140.25 Aligned_cols=154 Identities=16% Similarity=0.287 Sum_probs=113.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+|||||||||||++|+++|+.+++. +++++.++-.+-..++.+.....
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~ 116 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT 116 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc
Confidence 36679999999999999999999999653 56666654445555666655432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
+..|++|||+|.|.. ...+.|+..|+.- +..++||.+|+.+..+.+.
T Consensus 117 ~~~~kV~iIDE~~~ls~---------------------------~a~naLLk~LEep----p~~~~fIlattd~~kl~~t 165 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSG---------------------------HSFNALLKTLEEP----PSHVKFILATTDHHKLPVT 165 (509)
T ss_pred cCCcEEEEEEChHhcCH---------------------------HHHHHHHHHHhcc----CCCeEEEEEECChHhchHH
Confidence 346999999998742 2356677777753 3457788888888899989
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|..++.++....+...+..++..... .+..++...+.+++++.+.+
T Consensus 166 I~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 166 VLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred HHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 999 88 668999999999888888888777666543 34455555566666666655
No 66
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=118.79 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHc
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIAT 80 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~ 80 (266)
.+|+.+.+...+|+... |..++||||..|||||++++|+-.++ |..+++++-.++.+-..+...+...
T Consensus 67 ~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~ 137 (287)
T COG2607 67 RQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR 137 (287)
T ss_pred HHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC
Confidence 35566666666665443 34579999999999999999999888 6789999999888878888888888
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
.++.|||+||+-. .+.......|-..|+|-.+..+.+|+|.+|+|+...|+..+
T Consensus 138 ~~kFIlFcDDLSF--------------------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~ 191 (287)
T COG2607 138 PEKFILFCDDLSF--------------------------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDM 191 (287)
T ss_pred CceEEEEecCCCC--------------------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhh
Confidence 9999999999863 33345666777888988888888999999999865543221
Q ss_pred c--------------------CCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcC
Q 024550 161 L--------------------RPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRN 220 (266)
Q Consensus 161 ~--------------------r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~ 220 (266)
. -+.||+..+.|+.++.++..+|+.+|....+.....+-- -...+.+...++
T Consensus 192 ~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l--------~~eAl~WAt~rg 263 (287)
T COG2607 192 KDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEEL--------HAEALQWATTRG 263 (287)
T ss_pred hhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHHhcC
Confidence 1 123999999999999999999999999887766643221 122245555554
Q ss_pred CCHHHHHHHHHHHHHh
Q 024550 221 EAPEFALSGLIEFLES 236 (266)
Q Consensus 221 ~~~~~~~~~~~~~~~~ 236 (266)
.+.=..+.++...+..
T Consensus 264 ~RSGR~A~QF~~~~~g 279 (287)
T COG2607 264 GRSGRVAWQFIRDLAG 279 (287)
T ss_pred CCccHhHHHHHHHHHh
Confidence 4333444444444433
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=1.2e-15 Score=149.07 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=93.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC--------hhhHHHHHHHcc---cCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG--------NNDLRHILIATE---NKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~---~~~vl~iD 89 (266)
..+++|+||||||||++++.+|..+ +.+++.++++.+.. ...+..++.... .++|||||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfID 287 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID 287 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4579999999999999999999986 35577777766542 145666776553 57899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-----CCCcccccCCC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-----ERLDPALLRPG 164 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-----~~ld~al~r~~ 164 (266)
|+|.+.+.++.. . ....-+-|+..+. . ..+.+|+||+.. -.+|++|.|
T Consensus 288 Eih~l~~~g~~~------------------~-~~d~~n~Lkp~l~----~--G~l~~IgaTT~~e~~~~~~~d~AL~r-- 340 (852)
T TIGR03345 288 EAHTLIGAGGQA------------------G-QGDAANLLKPALA----R--GELRTIAATTWAEYKKYFEKDPALTR-- 340 (852)
T ss_pred ChHHhccCCCcc------------------c-cccHHHHhhHHhh----C--CCeEEEEecCHHHHhhhhhccHHHHH--
Confidence 999997522110 0 0111122333333 2 468899988864 347999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
||. .|.++.|+.++...|++.+...
T Consensus 341 Rf~-~i~v~eps~~~~~~iL~~~~~~ 365 (852)
T TIGR03345 341 RFQ-VVKVEEPDEETAIRMLRGLAPV 365 (852)
T ss_pred hCe-EEEeCCCCHHHHHHHHHHHHHh
Confidence 995 7999999999999997655543
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.4e-15 Score=132.38 Aligned_cols=154 Identities=15% Similarity=0.223 Sum_probs=108.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+||+||||||||++|+++|+.+++ .++.++.........++.+.....
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~ 116 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPS 116 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcc
Confidence 4567999999999999999999998863 233444332223344555544421
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.+.. ...+.++..++.- +..+.+|.+|+.++.+.++
T Consensus 117 ~~~~kviIIDEa~~l~~---------------------------~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR---------------------------HSFNALLKTLEEP----PQHIKFILATTDVEKIPKT 165 (363)
T ss_pred cCCceEEEEEChhhcCH---------------------------HHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHH
Confidence 346999999998732 2345577776643 3456777778888889999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ || ..++|+.|+.++...++...+...+..... .+..++...+.+++++.+.+
T Consensus 166 I~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 166 ILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998 88 679999999999999999888777655544 44555556667777666655
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.3e-15 Score=142.49 Aligned_cols=154 Identities=17% Similarity=0.273 Sum_probs=110.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+|||||||||||++|+++|+.+++. +++++..+..+...++.+....
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 36678999999999999999999999764 1223332222223344444332
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|+||||+|.|. ...++.||..|+.- +..++||++|+.+..|.+.
T Consensus 117 ~gk~KViIIDEAh~LT---------------------------~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS---------------------------RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred cCCcEEEEEechHhcC---------------------------HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHH
Confidence 135699999999873 33567778887753 3457788888888889999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..+.|+.++.++....+.+.+...+.... ..+..++...+.+++++.+++
T Consensus 166 IlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 166 VLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 88 67999999999999999888876655554 344555666667777777665
No 70
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.64 E-value=1.9e-15 Score=136.41 Aligned_cols=141 Identities=22% Similarity=0.267 Sum_probs=93.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------hhHHHHHHH------cccCCeeeeecchhhHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN--------NDLRHILIA------TENKSILVVEDIDCCIE 96 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~--------~~l~~~~~~------~~~~~vl~iDeid~l~~ 96 (266)
..++||+||||||||++|+++|..++.+|+.+++..+... ..+..++.. ...++||||||||.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 4679999999999999999999999999999998876531 112232222 23689999999999965
Q ss_pred HhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc---------CCCCceEEEEecCCCC-------------
Q 024550 97 LQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS---------SCGDERIIIFTTNHKE------------- 154 (266)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~~ivi~ttn~~~------------- 154 (266)
.....+. ..+.....+++.||+.|++... ......++|.|+|-.-
T Consensus 188 ~~~~~~~-------------~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~ 254 (412)
T PRK05342 188 KSENPSI-------------TRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII 254 (412)
T ss_pred ccCCCCc-------------CCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHH
Confidence 2110000 0011223467788888875421 1112345555655400
Q ss_pred ---------------------------------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHH
Q 024550 155 ---------------------------------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASN 186 (266)
Q Consensus 155 ---------------------------------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~ 186 (266)
.+.|+|+. |++..+.|...+.++..+|+..
T Consensus 255 ~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 255 KQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred HHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHH
Confidence 13455565 9999999999999999988874
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.63 E-value=8.2e-15 Score=133.43 Aligned_cols=150 Identities=23% Similarity=0.307 Sum_probs=104.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc------cCCeeeeecchhhHHHhHHHhhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATE------NKSILVVEDIDCCIELQDRLSRA 104 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~------~~~vl~iDeid~l~~~~~~~~~~ 104 (266)
..+++||||||||||++|+++|+.++.+++.+++... +...+..++.... .+.||||||+|.+..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------- 106 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------- 106 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------
Confidence 3479999999999999999999999999999988654 3344555554432 578999999998742
Q ss_pred hhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec--CCCCCCcccccCCCcceeEEEcCCCCHHHHHH
Q 024550 105 RAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT--NHKERLDPALLRPGRMDMHINMSHCTPSGFKM 182 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt--n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~ 182 (266)
...+.|+..++. ..+++|++| |....+++++++ || ..+.|+.++.++...
T Consensus 107 -------------------~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 -------------------AQQDALLPHVED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred -------------------HHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 123345555553 246666654 344578999999 88 679999999999999
Q ss_pred HHHHhhCCC--CC-CcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 183 LASNYLGIA--EH-PLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 183 i~~~~~~~~--~~-~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
++.+.+... +. .+. +.+..++...+.+++.+.+.+
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 999877542 11 233 334444554455555555544
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=6.1e-15 Score=136.13 Aligned_cols=154 Identities=16% Similarity=0.287 Sum_probs=111.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC----------------------------cEEEEeCCcccChhhHHHHHHHcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF----------------------------DVYDLELSNLLGNNDLRHILIATE 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~----------------------------~~~~i~~~~~~~~~~l~~~~~~~~ 81 (266)
.++++||+||||||||++|+++|+.+++ .+++++..+-.+...++.++..+.
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~ 121 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAE 121 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999865 233444433334455666665542
Q ss_pred ------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 82 ------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 82 ------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
...|++|||+|.+.. ..++.|+..++. .+..++||++|+.++.
T Consensus 122 ~~P~~~~~KVvIIDEa~~Ls~---------------------------~a~naLLk~LEe----pp~~~vfI~aTte~~k 170 (507)
T PRK06645 122 YKPLQGKHKIFIIDEVHMLSK---------------------------GAFNALLKTLEE----PPPHIIFIFATTEVQK 170 (507)
T ss_pred hccccCCcEEEEEEChhhcCH---------------------------HHHHHHHHHHhh----cCCCEEEEEEeCChHH
Confidence 457999999997732 235567777664 2356788888888889
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++++.+ || ..++|+.++.++...++...+..++..+.. .+..++...+.+++++.+.+
T Consensus 171 I~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 171 IPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred hhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999 88 579999999999999999999887766553 34455555556666655544
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=7.4e-15 Score=129.42 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=106.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC-----cEEEEeCCcccChhhHHHHHHH---c------ccCCeeeeecchhhHHHh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF-----DVYDLELSNLLGNNDLRHILIA---T------ENKSILVVEDIDCCIELQ 98 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~-----~~~~i~~~~~~~~~~l~~~~~~---~------~~~~vl~iDeid~l~~~~ 98 (266)
++|||||||||||++++++|+++.. .+++++.++..+...++..+.. . ....|++|||+|.+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-- 113 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-- 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--
Confidence 5999999999999999999999732 3566666655444444443322 1 1357999999998843
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHH
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPS 178 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~ 178 (266)
...+.|+..++.. +....+|.+||.+..+.+++.+ || ..+.|+.|+.+
T Consensus 114 -------------------------~aq~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~ 161 (319)
T PLN03025 114 -------------------------GAQQALRRTMEIY----SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQ 161 (319)
T ss_pred -------------------------HHHHHHHHHHhcc----cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHH
Confidence 1234455555532 2335677788888888899999 87 57999999999
Q ss_pred HHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 179 GFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+....+......++..+. +.+..++...+.+.+.+.+.+
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999988887776654 445556666666666666555
No 74
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-15 Score=137.67 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=126.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccCh--hhH----HHHHHHc--ccCCeeeeecchhhHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGN--NDL----RHILIAT--ENKSILVVEDIDCCIEL 97 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~--~~l----~~~~~~~--~~~~vl~iDeid~l~~~ 97 (266)
.+.++||+||+|||||.|++++++++ .+++..++|+.+... ..+ ..+|..+ ..|+|+++|++|.++..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 34579999999999999999999988 466778899888643 223 3344444 46999999999999861
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCH
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTP 177 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~ 177 (266)
.+.. ..++......+..+++.+-..+...+..+.||+|.+..+.+++.|.+|++|..++.++.|+.
T Consensus 510 s~~e--------------~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 510 SSNE--------------NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred Cccc--------------CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 1110 11223444566666655544333334557899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCC-cHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 178 SGFKMLASNYLGIAEHP-LFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 178 ~~~~~i~~~~~~~~~~~-~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|.+|++..++..... ...++..++.+ .||.+.|+.-+.
T Consensus 576 ~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 99999999999776422 23455555554 458888876654
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7e-15 Score=138.60 Aligned_cols=154 Identities=15% Similarity=0.274 Sum_probs=111.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+||+||+|||||++|+.+|+.+++ .+++++..+-.+...++.+.....
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~ 116 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA 116 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence 3567999999999999999999999876 234455443223344555544321
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.|. ....+.||+.|+. .+..++||.+|+.+..|.+.
T Consensus 117 ~g~~KV~IIDEah~Ls---------------------------~~a~NALLKtLEE----Pp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 117 RGRFKVYLIDEVHMLS---------------------------RHSFNALLKTLEE----PPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred cCCCEEEEEechHhCC---------------------------HHHHHHHHHHHHc----CCCCeEEEEecCCccccchH
Confidence 35699999999874 2356778887775 34567888888889999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|+.++.++....+.+.+..++..... .+..++...+.+++++.+++
T Consensus 166 I~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 98 779999999999999998888666555443 34445555666777666655
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=6.5e-15 Score=141.78 Aligned_cols=172 Identities=13% Similarity=0.262 Sum_probs=112.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHH---------------HH---HcccCCeeeeecchh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHI---------------LI---ATENKSILVVEDIDC 93 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~~~~vl~iDeid~ 93 (266)
..+||+||||||||++|+++|..++.+++.++++.+.....+..+ +. .....+||||||||.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 359999999999999999999999999999999877532222221 11 123568999999998
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCC-------------
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHK------------- 153 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~------------- 153 (266)
+.+ .+.+.|++.|+.-.-+. -.+.+||+|||.-
T Consensus 569 a~~---------------------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~ 621 (758)
T PRK11034 569 AHP---------------------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIH 621 (758)
T ss_pred hhH---------------------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCccc
Confidence 753 24566667666321111 1357899999832
Q ss_pred ------------CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCC
Q 024550 154 ------------ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNE 221 (266)
Q Consensus 154 ------------~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~ 221 (266)
..+.|.|+. |++.+|.|+.++.++..+|+..++.... ..+...--...++..-+..++....
T Consensus 622 ~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~----~~l~~~~i~l~~~~~~~~~l~~~~~ 695 (758)
T PRK11034 622 QDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQ----AQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred chhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHH----HHHHHCCCCceECHHHHHHHHHhCC
Confidence 125678888 9999999999999999999987774321 1111111123355555544444444
Q ss_pred CHHHHHHHHHHHHHh
Q 024550 222 APEFALSGLIEFLES 236 (266)
Q Consensus 222 ~~~~~~~~~~~~~~~ 236 (266)
++...++.+..+++.
T Consensus 696 ~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 696 DRAMGARPMARVIQD 710 (758)
T ss_pred CCCCCCchHHHHHHH
Confidence 554444444444443
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.3e-15 Score=134.34 Aligned_cols=154 Identities=12% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC------------------------CcEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK------------------------FDVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~------------------------~~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++++||+||||+|||++|+.+|+.++ ..+++++.++-.+...++.+.....
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~ 113 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPI 113 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccc
Confidence 367899999999999999999998653 3457777765555566776665542
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
+..|++|||+|.+.. ...+.|+..|+.- +..+++|.+|+.+..+.++
T Consensus 114 ~~~~KVvIIDEah~Ls~---------------------------~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~t 162 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN---------------------------SAFNALLKTLEEP----APHVKFILATTEVKKIPVT 162 (491)
T ss_pred cCCceEEEEeChHhCCH---------------------------HHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHH
Confidence 457999999997732 2456677777753 3557888888888899999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ || ..++|..++.++....+...+..++..+.. .+..++...+.+.+++.+.+
T Consensus 163 I~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 163 IIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred HHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 88 569999999999999999988887776654 34455556666766666555
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1e-14 Score=137.11 Aligned_cols=154 Identities=15% Similarity=0.284 Sum_probs=111.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC-----------------------------cEEEEeCCcccChhhHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF-----------------------------DVYDLELSNLLGNNDLRHILIAT 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~-----------------------------~~~~i~~~~~~~~~~l~~~~~~~ 80 (266)
.++.+|||||+|||||++++++|+.+++ .++.++..+-.+-..++.++...
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~ 116 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQA 116 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHH
Confidence 3567999999999999999999999865 23444443333334555655543
Q ss_pred c------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 81 E------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 81 ~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
. ...|++|||+|.|.. ...+.|+..|+. .+..++||.+|+.+.
T Consensus 117 ~~~p~~g~~KV~IIDEvh~Ls~---------------------------~a~NaLLKtLEE----PP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 117 VYKPVQGRFKVFMIDEVHMLTN---------------------------TAFNAMLKTLEE----PPEYLKFVLATTDPQ 165 (618)
T ss_pred HhCcccCCceEEEEEChhhCCH---------------------------HHHHHHHHhccc----CCCCeEEEEEECCch
Confidence 2 346999999998742 234566766664 335577888888888
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
.+.+.+++ || ..++|+.++.++....+...+..++.....+ +..++...+.+.+++.+.+
T Consensus 166 kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lL 226 (618)
T PRK14951 166 KVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLT 226 (618)
T ss_pred hhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88889999 88 6799999999999999998888777666543 4555666666776666654
No 79
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.61 E-value=5.8e-15 Score=132.79 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=116.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------hhHHHHHHH------cccCCeeeeecchhhHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN--------NDLRHILIA------TENKSILVVEDIDCCIE 96 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~--------~~l~~~~~~------~~~~~vl~iDeid~l~~ 96 (266)
..++||+||||||||++|+++|..++.++..+++..+... ..+...+.. ...++||||||+|.+..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 3579999999999999999999999999999888766421 112333222 23578999999999875
Q ss_pred HhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC----C-----CCceEEEEecCCC--------------
Q 024550 97 LQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS----C-----GDERIIIFTTNHK-------------- 153 (266)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~-----~~~~ivi~ttn~~-------------- 153 (266)
..+..+.. .+.....+++.||+.|++.... . ..+.++|.|+|-.
T Consensus 196 ~~~~~s~~-------------~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~ 262 (413)
T TIGR00382 196 KSENPSIT-------------RDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKII 262 (413)
T ss_pred hhcccccc-------------ccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHH
Confidence 32211110 0122235677788888765421 1 1345777787751
Q ss_pred -------------C-----------------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH
Q 024550 154 -------------E-----------------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV 197 (266)
Q Consensus 154 -------------~-----------------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~ 197 (266)
+ .+.|+|+. |++.++.|...+.+++.+|+...... +..
T Consensus 263 ~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~----l~k 336 (413)
T TIGR00382 263 KKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNA----LVK 336 (413)
T ss_pred HHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHH----HHH
Confidence 0 13455666 99999999999999998887754311 112
Q ss_pred HHHHHhh----cCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 024550 198 EIEKLIA----TAKVTPADVAEQLMRNEAPEFALSGLIEFLESKK 238 (266)
Q Consensus 198 ~~~~l~~----~~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (266)
++..... ...++...+..+...+.++...++.+...+++.-
T Consensus 337 q~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 337 QYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred HHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 2222221 1235666555555545555555555555555443
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=3.9e-15 Score=137.02 Aligned_cols=157 Identities=15% Similarity=0.251 Sum_probs=108.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
..++||||||||||+|++++++++ +..++++++..+... .....+........+|+|||++.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~- 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE- 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH-
Confidence 459999999999999999999987 566888887765421 1122333344567899999999875311
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcce--eEEEcCC
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRMD--MHINMSH 174 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf~--~~i~~~~ 174 (266)
.....++..++...+. ...++|+++..|.. +++++.+ ||. ..+++..
T Consensus 228 ------------------------~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~ 279 (450)
T PRK00149 228 ------------------------RTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEP 279 (450)
T ss_pred ------------------------HHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecC
Confidence 1122344444433332 23466666666644 6788998 885 6899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 175 CTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
|+.++|..|++......+..+.++. ..++....-+.+++...+
T Consensus 280 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 280 PDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 9999999999999887666665544 555556667777766665
No 81
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=1.6e-14 Score=121.01 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
.+..++|+||||||||++++++++.+ +.+++.+++..+.. .....+.......+|+|||+|.+...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~~--------- 105 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ--ADPEVLEGLEQADLVCLDDVEAIAGQ--------- 105 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH--hHHHHHhhcccCCEEEEeChhhhcCC---------
Confidence 35679999999999999999999877 46788888877643 22344444556679999999987420
Q ss_pred cCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc---ccccCCCcc--eeEEEcCCCCHHHHH
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD---PALLRPGRM--DMHINMSHCTPSGFK 181 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld---~al~r~~Rf--~~~i~~~~p~~~~~~ 181 (266)
... ...+...++..... ...+|++++..+..++ +.|.+ || ...|.++.|+.+++.
T Consensus 106 -------------~~~---~~~L~~~l~~~~~~--~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~ 165 (226)
T TIGR03420 106 -------------PEW---QEALFHLYNRVREA--GGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKI 165 (226)
T ss_pred -------------hHH---HHHHHHHHHHHHHc--CCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHH
Confidence 011 12233333322211 2244444444444332 67777 66 478999999999999
Q ss_pred HHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 182 MLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 182 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
.+++.+....+..+..+ +..++.....+++++.+++
T Consensus 166 ~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 166 AALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99988776555555443 4555555556777766664
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.60 E-value=6.1e-15 Score=134.06 Aligned_cols=157 Identities=15% Similarity=0.229 Sum_probs=107.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
..++||||||||||+|++++++++ +..++++++..+... ..............+|+|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-- 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-- 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC--
Confidence 458999999999999999999987 567888887665321 112222233445689999999987531
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC---CCcccccCCCcce--eEEEcCC
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE---RLDPALLRPGRMD--MHINMSH 174 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~---~ld~al~r~~Rf~--~~i~~~~ 174 (266)
. .....++..++..... ...++|+++..|. .+++.+.+ ||. ..+.++.
T Consensus 215 --------------------~---~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~ 267 (405)
T TIGR00362 215 --------------------E---RTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEP 267 (405)
T ss_pred --------------------H---HHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCC
Confidence 0 1122344444433322 2345665655664 35688888 775 6899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 175 CTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
|+.++|..|++..+...+..+.++. ..++....-+.+++...+
T Consensus 268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999988777665554 555666667777776665
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=8.5e-15 Score=137.79 Aligned_cols=154 Identities=15% Similarity=0.273 Sum_probs=114.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++++||+||+|||||++|+++|+.+++. +++++...-.+...++.++..+
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~ 116 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT 116 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhh
Confidence 46789999999999999999999987542 3444444333444566666543
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+. ....+.|+..|+.- +..+.||.+|+.+..+.+.
T Consensus 117 ~gk~KVIIIDEad~Ls---------------------------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 117 AGKYKVYIIDEVHMLS---------------------------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVT 165 (709)
T ss_pred hCCcEEEEEECccccC---------------------------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchH
Confidence 245799999999763 12356677777753 3457788888889999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..+.|+.++.++....+.+.+...+..+.. .+..++...+.+.+++.+.+
T Consensus 166 IrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 166 VLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 998 98 668999999999999999999888776654 44556666667777777766
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=7.9e-15 Score=143.79 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=95.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHHc---ccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIAT---ENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~~---~~~~vl~iD 89 (266)
..+++|+||||||||++++++|..+ +.+++.++...+... ..+..+|... ..++|||||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4579999999999999999999988 778888888776532 2466666543 357899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCCC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRPG 164 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~~ 164 (266)
|+|.+.+..+.. +. ....+.|...+. + +.+.+|++|+..+ .+|+++.|
T Consensus 279 Eih~l~~~~~~~------------------~~-~d~~~~lkp~l~----~--g~l~~IgaTt~~e~r~~~~~d~al~r-- 331 (857)
T PRK10865 279 ELHTMVGAGKAD------------------GA-MDAGNMLKPALA----R--GELHCVGATTLDEYRQYIEKDAALER-- 331 (857)
T ss_pred cHHHhccCCCCc------------------cc-hhHHHHhcchhh----c--CCCeEEEcCCCHHHHHHhhhcHHHHh--
Confidence 999997532110 00 111222223322 2 4688999998775 47999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
||. .|.++.|+.+++..|++.+...
T Consensus 332 Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 332 RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 996 5899999999999999877644
No 85
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.60 E-value=1.4e-14 Score=135.46 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=105.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCccc-ChhhHH-HH----------------------
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLL-GNNDLR-HI---------------------- 76 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~-~~~~l~-~~---------------------- 76 (266)
+..+|||||||||||++|++++..+ +.+|+.++|.... +...+. .+
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~ 165 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQ 165 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCccc
Confidence 4579999999999999999998653 3678999986421 111110 00
Q ss_pred ----HHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc---------------
Q 024550 77 ----LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW--------------- 137 (266)
Q Consensus 77 ----~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------- 137 (266)
......+++|||||++.|... .++.|+..|+...
T Consensus 166 ~~~G~l~~a~gG~L~IdEI~~L~~~---------------------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~ 218 (531)
T TIGR02902 166 PKPGAVTRAHGGVLFIDEIGELHPV---------------------------QMNKLLKVLEDRKVFLDSAYYNSENPNI 218 (531)
T ss_pred ccCchhhccCCcEEEEechhhCCHH---------------------------HHHHHHHHHHhCeeeeccccccccCccc
Confidence 011234689999999988542 2233333332100
Q ss_pred ---------c-CCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCC
Q 024550 138 ---------S-SCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAK 207 (266)
Q Consensus 138 ---------~-~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 207 (266)
. ...+.+++++||+.|+.+++++++ || ..|.|+.++.+++..|+++++...+..+.++...++..+.
T Consensus 219 ~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~ 295 (531)
T TIGR02902 219 PSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA 295 (531)
T ss_pred ccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh
Confidence 0 001224566677889999999999 98 5799999999999999999998777666655555555555
Q ss_pred CCHHHHHHHH
Q 024550 208 VTPADVAEQL 217 (266)
Q Consensus 208 ~s~~~i~~~l 217 (266)
.+.+++.+++
T Consensus 296 ~n~Rel~nll 305 (531)
T TIGR02902 296 SNGREAVNIV 305 (531)
T ss_pred hhHHHHHHHH
Confidence 6777777766
No 86
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.6e-14 Score=141.91 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=93.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHHc---ccCCeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIAT---ENKSILVV 88 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~~---~~~~vl~i 88 (266)
...+++|+||||||||++++.+|..+ +.+++.++...+... ..+..++... ..++||||
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfI 272 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFI 272 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEe
Confidence 34579999999999999999999986 677888887765422 2456666554 35799999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCC
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRP 163 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~ 163 (266)
||+|.+.+..+.. + .....+.|...+ .. ..+.+|++|+..+ .+|+++.|
T Consensus 273 DEih~l~~~g~~~------------------~-~~d~~~~Lk~~l----~~--g~i~~IgaTt~~e~r~~~~~d~al~r- 326 (852)
T TIGR03346 273 DELHTLVGAGKAE------------------G-AMDAGNMLKPAL----AR--GELHCIGATTLDEYRKYIEKDAALER- 326 (852)
T ss_pred ccHHHhhcCCCCc------------------c-hhHHHHHhchhh----hc--CceEEEEeCcHHHHHHHhhcCHHHHh-
Confidence 9999987521110 0 011122222222 12 4588899888663 47999999
Q ss_pred CcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 164 GRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
||. .|.++.|+.+++..|++.+...
T Consensus 327 -Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 327 -RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred -cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 995 5899999999999999877544
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.3e-14 Score=133.14 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=110.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+|||||||||||++|+.+|+.+++ .+++++.....+...++.++...
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~ 116 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS 116 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhh
Confidence 3567999999999999999999998864 34445543333333444444332
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+. ....+.|+..|+.- +..++||++|+.+..+.++
T Consensus 117 ~g~~kViIIDEa~~ls---------------------------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~t 165 (546)
T PRK14957 117 QGRYKVYLIDEVHMLS---------------------------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVT 165 (546)
T ss_pred cCCcEEEEEechhhcc---------------------------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhh
Confidence 245799999999773 22456777777753 3457777777778888888
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|..++.++....+...+..++..... .+..++...+.+.+++.+.+
T Consensus 166 I~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 166 ILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred HHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998 88 679999999999998888888777655543 34556666667777776665
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.5e-14 Score=131.49 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=108.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC-----------------------cEEEEeCCcccChhhHHHHHHHc------
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF-----------------------DVYDLELSNLLGNNDLRHILIAT------ 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~-----------------------~~~~i~~~~~~~~~~l~~~~~~~------ 80 (266)
.++.+|||||||||||++|+++|+.+.+ .++.++.....+...++.+....
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~ 114 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLR 114 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence 4567899999999999999999998853 14555554333333444443322
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
..+.|++|||+|.+. ...++.|+..++.- +..+++|.+|+.+..+.+.+
T Consensus 115 ~~~kVVIIDEad~ls---------------------------~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 115 GGRKVYILDEAHMMS---------------------------KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CCCeEEEEECccccC---------------------------HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHH
Confidence 246799999999663 22456677777653 34577888888889999999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
.+ ||. .+.|+.|+.++....+...+...+..... .+..++...+.+.+.+.+.|
T Consensus 164 ~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~L 218 (504)
T PRK14963 164 LS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLL 218 (504)
T ss_pred hc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99 884 69999999999999999988877766543 34555555555666555444
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=4.2e-14 Score=127.21 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=102.4
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHcCCc-----------------------EEEEeCCc-ccChhhHHHHHHHcc
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD-----------------------VYDLELSN-LLGNNDLRHILIATE 81 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~-----------------------~~~i~~~~-~~~~~~l~~~~~~~~ 81 (266)
.+...++++||+||||+|||++|+++|..+.+. ++.+.+.. ..+...++.++....
T Consensus 31 ~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~ 110 (394)
T PRK07940 31 AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAA 110 (394)
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHH
Confidence 344467889999999999999999999987553 22333221 123344566655432
Q ss_pred ------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 82 ------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 82 ------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
...|++|||+|.+.. ...+.|+..|+. ++.+.++|.+|+.++.
T Consensus 111 ~~p~~~~~kViiIDead~m~~---------------------------~aanaLLk~LEe----p~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 111 RRPSTGRWRIVVIEDADRLTE---------------------------RAANALLKAVEE----PPPRTVWLLCAPSPED 159 (394)
T ss_pred hCcccCCcEEEEEechhhcCH---------------------------HHHHHHHHHhhc----CCCCCeEEEEECChHH
Confidence 346999999998842 133567777764 2345666666666899
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~ 216 (266)
+.+++++ || ..+.|+.|+.++...++....+. .......++...+.++.....+
T Consensus 160 llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 160 VLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDGV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999 88 67999999999988877643321 1234445555555666544333
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=6.8e-15 Score=127.06 Aligned_cols=121 Identities=25% Similarity=0.376 Sum_probs=90.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc---EEEEeCCcccChhhHHHHHHHcc-------cCCeeeeecchhhHHHhHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD---VYDLELSNLLGNNDLRHILIATE-------NKSILVVEDIDCCIELQDRL 101 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~---~~~i~~~~~~~~~~l~~~~~~~~-------~~~vl~iDeid~l~~~~~~~ 101 (266)
.+++||||||||||+||+.+++....+ |+++++... +...++.+|.... +++|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN------ 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN------ 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh------
Confidence 359999999999999999999998776 666665544 4567888887753 58999999999763
Q ss_pred hhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec--CCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 102 SRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT--NHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt--n~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
+..+..||-.++. ..+++|++| |+.-.|+.+|++ || .++.+...+.+.
T Consensus 236 ---------------------ksQQD~fLP~VE~------G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~ 285 (554)
T KOG2028|consen 236 ---------------------KSQQDTFLPHVEN------GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNA 285 (554)
T ss_pred ---------------------hhhhhcccceecc------CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHH
Confidence 2233456666553 347788755 444578999999 87 457788888888
Q ss_pred HHHHHHHhhC
Q 024550 180 FKMLASNYLG 189 (266)
Q Consensus 180 ~~~i~~~~~~ 189 (266)
...|+.+-+.
T Consensus 286 v~~iL~raia 295 (554)
T KOG2028|consen 286 VVTILMRAIA 295 (554)
T ss_pred HHHHHHHHHH
Confidence 8888887553
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=1.5e-14 Score=122.09 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=100.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAA 107 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 107 (266)
...++||||||||||++++++++.+. ..+.++++..... ...+.+....+-.+|+|||++.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~~~~~~~~~~~~dlliiDdi~~~~~----------- 111 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--FVPEVLEGMEQLSLVCIDNIECIAG----------- 111 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--hhHHHHHHhhhCCEEEEeChhhhcC-----------
Confidence 35799999999999999999998763 4455555544321 1223333334457899999998743
Q ss_pred CCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcce--eEEEcCCCCHHHHHH
Q 024550 108 NPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRMD--MHINMSHCTPSGFKM 182 (266)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~~~~~ 182 (266)
.......+..+++.+-. . +...+++++++.|.. +.+.|.+ ||. .++.+..|+.+++.+
T Consensus 112 -----------~~~~~~~lf~l~n~~~e---~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 112 -----------DELWEMAIFDLYNRILE---S-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred -----------CHHHHHHHHHHHHHHHH---c-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHH
Confidence 11222233344444322 1 112455556666655 5789999 775 889999999999999
Q ss_pred HHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 183 LASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 183 i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
++++.....+..+.++. ..++....-+.+.+...+
T Consensus 175 ~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 175 ALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 99886665555555544 444445555666665554
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.5e-14 Score=134.89 Aligned_cols=154 Identities=16% Similarity=0.299 Sum_probs=110.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+||+||||+|||++|+.+|+.+++. ++.++.+.-.+-..++.++..+.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~ 116 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT 116 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc
Confidence 35679999999999999999999998652 34444433223344555554432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
+..|++|||+|.+.. ...+.|+..++.- +..++||.+|+.++.+.+.
T Consensus 117 ~~~~kVvIIDEad~ls~---------------------------~a~naLLK~LEep----p~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK---------------------------SAFNAMLKTLEEP----PEHVKFILATTDPQKIPVT 165 (527)
T ss_pred cCCceEEEEcCcccCCH---------------------------HHHHHHHHHHhCC----CCCEEEEEEeCChhhCchh
Confidence 346999999997732 2456677777753 3457788888888888888
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|+.++.++....+.+.+..++..... .+..++...+.+++++.+.+
T Consensus 166 I~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 166 VLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998 88 679999999999998888888776655543 34555666667777666665
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.6e-14 Score=133.93 Aligned_cols=154 Identities=22% Similarity=0.331 Sum_probs=110.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC--------------------------cEEEEeCCcccChhhHHHHHHHc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF--------------------------DVYDLELSNLLGNNDLRHILIAT--- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~~~--- 80 (266)
.++.+|||||+|||||++|+++|+.+++ .+++++.+...+-..++.+....
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~ 113 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYA 113 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhh
Confidence 4567999999999999999999998864 23444443333333444443222
Q ss_pred ---ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc
Q 024550 81 ---ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD 157 (266)
Q Consensus 81 ---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld 157 (266)
....|++|||+|.|.. ...+.||..|+.- +..++||.+|+.+..+.
T Consensus 114 P~~~~~KVvIIDEah~Lt~---------------------------~A~NALLK~LEEp----p~~~~fIL~tte~~kll 162 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMVTT---------------------------AGFNALLKIVEEP----PEHLIFIFATTEPEKVL 162 (584)
T ss_pred hhcCCceEEEEECCCcCCH---------------------------HHHHHHHHHHhcC----CCCeEEEEEeCChHhhH
Confidence 2467999999998742 2456677777753 35688888888889999
Q ss_pred ccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 158 PALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 158 ~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
+++.+ || ..++|..++.++..+.+..++...+..+..+. ..++...+.+++++.+.|
T Consensus 163 ~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 163 PTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999 87 67999999999999999988888776665443 444455556666555554
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=6.1e-15 Score=141.96 Aligned_cols=133 Identities=24% Similarity=0.325 Sum_probs=91.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC--------hhhHHHHHHHc--ccCCeeeeec
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG--------NNDLRHILIAT--ENKSILVVED 90 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~--~~~~vl~iDe 90 (266)
..++||+||||||||++++++|... +..++.++...+.. ...+..++... ..++||||||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 4579999999999999999999875 55666665554432 22345555443 3578999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCCCc
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRPGR 165 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~~R 165 (266)
+|.+++..... ..... +.+.|...... ..+.+|++||.++ ..|++|.| |
T Consensus 287 Ih~L~g~g~~~------------------~g~~d----~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~r--R 340 (758)
T PRK11034 287 IHTIIGAGAAS------------------GGQVD----AANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_pred HHHHhccCCCC------------------CcHHH----HHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHh--h
Confidence 99997522110 00011 11222222222 5688999998764 46999999 9
Q ss_pred ceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 166 MDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 166 f~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
|. .|.++.|+.+++..|++.+...
T Consensus 341 Fq-~I~v~ePs~~~~~~IL~~~~~~ 364 (758)
T PRK11034 341 FQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_pred Cc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 95 7999999999999999876543
No 95
>PRK08727 hypothetical protein; Validated
Probab=99.58 E-value=1.6e-14 Score=121.70 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=100.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAAN 108 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 108 (266)
..++||||+|||||+++++++..+ +....+++...+. ..+...+....+..+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~~----------- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--GRLRDALEALEGRSLVALDGLESIAGQ----------- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--hhHHHHHHHHhcCCEEEEeCcccccCC-----------
Confidence 459999999999999999998765 5566666655442 234456666677889999999987431
Q ss_pred CccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC---cccccCCCcc--eeEEEcCCCCHHHHHHH
Q 024550 109 PDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL---DPALLRPGRM--DMHINMSHCTPSGFKML 183 (266)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l---d~al~r~~Rf--~~~i~~~~p~~~~~~~i 183 (266)
......+..+++.+.. . ...+|+.+.+.|..+ +++|.+ || ...+.++.|+.+++..+
T Consensus 109 -----------~~~~~~lf~l~n~~~~---~--~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 109 -----------REDEVALFDFHNRARA---A--GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred -----------hHHHHHHHHHHHHHHH---c--CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHH
Confidence 1112233344444322 1 223444444566554 689999 86 57899999999999999
Q ss_pred HHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHH
Q 024550 184 ASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQ 216 (266)
Q Consensus 184 ~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~ 216 (266)
++++....+..+..+. ..++....-+...+.+.
T Consensus 171 L~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 171 LRERAQRRGLALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 9987655555554443 34444444444444333
No 96
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.58 E-value=2.5e-14 Score=124.38 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=94.0
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHH------------------HH-HHcccCCeeee
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRH------------------IL-IATENKSILVV 88 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~------------------~~-~~~~~~~vl~i 88 (266)
+..++.+||.||||||||++++.+|..++.+++.+++.......++.. .+ .....++++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 334667999999999999999999999999999999876553211110 01 11245788999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhh-----hhc--cccCCCCceEEEEecCCCC-------
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNF-----IDG--LWSSCGDERIIIFTTNHKE------- 154 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----l~~--~~~~~~~~~ivi~ttn~~~------- 154 (266)
||+|...+ .....++.+|+. +.+ -.-.....+.+|+|+|..+
T Consensus 141 DEin~a~p------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~ 196 (327)
T TIGR01650 141 DEYDAGRP------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL 196 (327)
T ss_pred chhhccCH------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence 99997643 111222333321 000 0001224578999999753
Q ss_pred -----CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 155 -----RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 155 -----~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
.++.|++. ||.+++.+.+|+.++-.+|+.....
T Consensus 197 y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 197 YHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 46899999 9988899999999999999887653
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.1e-14 Score=132.90 Aligned_cols=154 Identities=17% Similarity=0.251 Sum_probs=110.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+|||||+|||||++|+.+|+.+++ .++.++.+...+...++.+...+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~ 116 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPS 116 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcc
Confidence 4667999999999999999999998853 455565544334445566655432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.|.. ...+.|+..++. ++..+++|.+|+.++.++++
T Consensus 117 ~~~~kViIIDE~~~Lt~---------------------------~a~naLLKtLEe----pp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST---------------------------GAFNALLKTLEE----PPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred cCCeEEEEEECcccCCH---------------------------HHHHHHHHHhcC----CCCCeEEEEEeCChhhCcHH
Confidence 357999999998732 245567776664 24567888888889999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..+.|+.|+.++....+...+...+..... .+..++...+.+++++.+.+
T Consensus 166 I~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 166 ILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred HHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 88 468999999999999999888777665553 34445555556666655554
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=3e-14 Score=125.32 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHH----HHc---ccCCeeeeecchhhHHHhHHHhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHIL----IAT---ENKSILVVEDIDCCIELQDRLSR 103 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~----~~~---~~~~vl~iDeid~l~~~~~~~~~ 103 (266)
++.+|||||||+|||++++++++.++.+++.+++.. .....++..+ ... ..+.||+|||+|.+..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------- 114 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------- 114 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------
Confidence 456777999999999999999999999999999887 2222222211 111 3578999999997721
Q ss_pred hhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHH
Q 024550 104 ARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183 (266)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i 183 (266)
.. ....+...++.. +....+|+|||.+..+++++.+ ||. .+.|+.|+.+++..+
T Consensus 115 ----------------~~---~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~i 168 (316)
T PHA02544 115 ----------------AD---AQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEM 168 (316)
T ss_pred ----------------HH---HHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHH
Confidence 01 112233334432 2456788899999999999999 984 689999999998877
Q ss_pred HHHh
Q 024550 184 ASNY 187 (266)
Q Consensus 184 ~~~~ 187 (266)
+..+
T Consensus 169 l~~~ 172 (316)
T PHA02544 169 MKQM 172 (316)
T ss_pred HHHH
Confidence 6544
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.58 E-value=1.6e-14 Score=120.51 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=102.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhhHHHhHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~ 100 (266)
.++||||+|+|||+|++++++++ +..++++++..+.. ...+..+........+|+|||++.+.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~--- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK--- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH---
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc---
Confidence 58999999999999999999875 56788888776542 1233445566678899999999988541
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcce--eEEEcCCC
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRMD--MHINMSHC 175 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf~--~~i~~~~p 175 (266)
...+..+..+++.+. .. .+.+|+++...|.. +++.|.+ ||. ..+.+..|
T Consensus 113 -------------------~~~q~~lf~l~n~~~---~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~p 166 (219)
T PF00308_consen 113 -------------------QRTQEELFHLFNRLI---ES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPP 166 (219)
T ss_dssp -------------------HHHHHHHHHHHHHHH---HT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE---
T ss_pred -------------------hHHHHHHHHHHHHHH---hh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCC
Confidence 112233344444443 22 34666666666654 4677888 665 68999999
Q ss_pred CHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 176 TPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
+.+.|..|+.++....+..+.+++..++. ...-+.+++..++
T Consensus 167 d~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp -HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 99999999999999888888777655444 4556777776665
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.7e-14 Score=137.59 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=105.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC--------------------------cEEEEeCCcccChhhHHHHHHHc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF--------------------------DVYDLELSNLLGNNDLRHILIAT--- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~--------------------------~~~~i~~~~~~~~~~l~~~~~~~--- 80 (266)
.++.+|||||+|||||++++.+|+.+++ .++.++.....+...++.+....
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~ 115 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFA 115 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhc
Confidence 3567999999999999999999999964 23444443322333444433221
Q ss_pred ---ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc
Q 024550 81 ---ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD 157 (266)
Q Consensus 81 ---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld 157 (266)
....|+||||+|.|.. ...+.||+.|+.. +..++||++|+.++.|.
T Consensus 116 p~~~~~KV~IIDEad~lt~---------------------------~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 116 PAESRYKIFIIDEAHMVTP---------------------------QGFNALLKIVEEP----PEHLKFIFATTEPDKVI 164 (824)
T ss_pred hhcCCceEEEEechhhcCH---------------------------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhh
Confidence 2467999999998842 3456777887754 35688888888888899
Q ss_pred ccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHH
Q 024550 158 PALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAE 215 (266)
Q Consensus 158 ~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~ 215 (266)
++|.+ || ..+.|..++.++...++..++..++..+..+ +..++...+.+..++.+
T Consensus 165 ~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~ 220 (824)
T PRK07764 165 GTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLS 220 (824)
T ss_pred HHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999 88 6799999999999999998887766555433 33444444444444433
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=8.1e-14 Score=136.67 Aligned_cols=133 Identities=23% Similarity=0.255 Sum_probs=93.3
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC--------hhhHHHHHHHcc--cCCeee
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG--------NNDLRHILIATE--NKSILV 87 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~vl~ 87 (266)
...+++++|+||||||||++++.+|..+ +.+++.++...+.. ...+..++..+. .++|||
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILf 276 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILV 276 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456689999999999999999999987 47889998776542 235667776543 478999
Q ss_pred eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccC
Q 024550 88 VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLR 162 (266)
Q Consensus 88 iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r 162 (266)
|||+|.+.+..... +. ....+-|...+. . ..+.+|++|+..+ ..|++|.+
T Consensus 277 iDEih~l~~~g~~~------------------g~-~~~a~lLkp~l~----r--g~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 277 IDEVHTLIGAGAAE------------------GA-IDAANILKPALA----R--GELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred EecHHHHhcCCCCC------------------Cc-ccHHHHhHHHHh----C--CCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 99999997522100 00 111222223333 2 4588888888653 46899999
Q ss_pred CCcceeEEEcCCCCHHHHHHHHHHhh
Q 024550 163 PGRMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
||. .|.++.|+.++...|++...
T Consensus 332 --Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 332 --RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred --cce-EEecCCCCHHHHHHHHHHHH
Confidence 995 58999999999888876543
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=1.1e-13 Score=124.19 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=88.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC---------CcEEEEeCCcccChhh--------------------------HHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK---------FDVYDLELSNLLGNND--------------------------LRH 75 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~---------~~~~~i~~~~~~~~~~--------------------------l~~ 75 (266)
+.+++||||||||||++++++++.+. ..+++++|....+... +..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45799999999999999999998763 5678888865543111 111
Q ss_pred HHHH---cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC
Q 024550 76 ILIA---TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH 152 (266)
Q Consensus 76 ~~~~---~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~ 152 (266)
++.. ..++.||+|||+|.+.. .....+..++...+ .....+.++.+|+++|.
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~------------------------~~~~~L~~l~~~~~-~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVG------------------------DDDDLLYQLSRARS-NGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhcc------------------------CCcHHHHhHhcccc-ccCCCCCeEEEEEEECC
Confidence 1111 23467999999998852 01112333333211 11122246788899988
Q ss_pred CC---CCcccccCCCcce-eEEEcCCCCHHHHHHHHHHhhC
Q 024550 153 KE---RLDPALLRPGRMD-MHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 153 ~~---~ld~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
++ .+++.+.+ ||. ..|+|+.++.++...|+...+.
T Consensus 175 ~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 175 LKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 75 57788887 775 6799999999999999998875
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.3e-14 Score=133.99 Aligned_cols=154 Identities=14% Similarity=0.230 Sum_probs=111.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+|||||+|+|||++++.+|+.+++. +++++.....+...++.+.....
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~ 116 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPS 116 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccc
Confidence 46779999999999999999999998642 44555443333445555554432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.+.. ...+.|+..|+.- +..++||.+|+.+..|.++
T Consensus 117 ~~~~KVvIIdev~~Lt~---------------------------~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST---------------------------NAFNALLKTLEEP----PPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred cCCceEEEEEChhhCCH---------------------------HHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHH
Confidence 356999999997732 2456777777753 3568888888999999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|..++.++....+..++...+..+. ..+..++...+.+.+++.+.+
T Consensus 166 I~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 88 56999999999999888888877766554 344455555666666555554
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.5e-14 Score=131.57 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=109.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++++||+||||+|||++|+++|+.+.+ .++.++.+...+-..++.+.....
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~ 116 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT 116 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchh
Confidence 3578999999999999999999998753 344455443333344555544322
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.+.. ...+.|+..|+.- +..+++|++|+.+..+.++
T Consensus 117 ~~~~KVIIIDEad~Lt~---------------------------~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 117 TFKYKVYIIDEAHMLST---------------------------SAWNALLKTLEEP----PKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred hCCcEEEEEechHhCCH---------------------------HHHHHHHHHHHhC----CCcEEEEEECCChHhhhHH
Confidence 356999999998732 1345677777642 3457888888889999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+++ || ..++|+.|+.++....+...+...+.... ..+..++...+.+++++.+.+
T Consensus 166 I~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 166 IIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 999 88 46999999999999999888877665443 444555666666777666655
No 105
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=6.1e-14 Score=125.27 Aligned_cols=154 Identities=19% Similarity=0.317 Sum_probs=109.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE---- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~---- 81 (266)
.++.+|||||||+|||++++++++.+.+ .++.++.....+...++.++..+.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 114 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPS 114 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcc
Confidence 3567999999999999999999998743 244444433223334555555432
Q ss_pred --cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 82 --NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 82 --~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
...|++|||+|.+.. ...+.++..++.. +..+++|.+|+.+..+.++
T Consensus 115 ~~~~~vviidea~~l~~---------------------------~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~ 163 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSK---------------------------SAFNALLKTLEEP----PEHVVFILATTEPHKIPAT 163 (355)
T ss_pred cCCceEEEEeChhhcCH---------------------------HHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHH
Confidence 346999999997732 2345566766542 3457777888888888889
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ || ..++|+.|+.++...++..++...+..+. ..+..++...+.+++.+.+.+
T Consensus 164 l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 164 ILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 998 88 57999999999999999998877776655 444555666666777666655
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=99.56 E-value=4.9e-14 Score=118.80 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=100.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAAN 108 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 108 (266)
..++||||+|||||+|++++++++ +..+++++..++... ...+.....+..+|+|||++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~------------ 111 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNLEQYELVCLDDLDVIAG------------ 111 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhhhhCCEEEEechhhhcC------------
Confidence 568999999999999999999765 567778887666432 223444445567999999997743
Q ss_pred CccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcc--eeEEEcCCCCHHHHHHH
Q 024550 109 PDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRM--DMHINMSHCTPSGFKML 183 (266)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf--~~~i~~~~p~~~~~~~i 183 (266)
.......+..++|. ..+. ...++++++..|.. +.+.|.+ || +..+.+..|+.+++..+
T Consensus 112 ----------~~~~~~~Lf~l~n~---~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 112 ----------KADWEEALFHLFNR---LRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred ----------ChHHHHHHHHHHHH---HHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHH
Confidence 11112233334443 3222 34666766665643 3688999 87 47889999999999999
Q ss_pred HHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 184 ASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 184 ~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
++......+..+.++. ..++....-+.+.+...+
T Consensus 175 l~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9865544444454443 344444555566555543
No 107
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=130.15 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=104.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQDRL 101 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~ 101 (266)
..++||||||+|||+|++++++.+ +..++++++..+... ......-.......+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 469999999999999999999976 677888887654321 111111122456789999999987430
Q ss_pred hhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC---CCcccccCCCcc--eeEEEcCCCC
Q 024550 102 SRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE---RLDPALLRPGRM--DMHINMSHCT 176 (266)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~---~ld~al~r~~Rf--~~~i~~~~p~ 176 (266)
......+..+++.+ ... ...+|+++++.|. .++++|.+ || +..+.++.|+
T Consensus 218 ------------------~~~qeelf~l~N~l---~~~--~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd 272 (445)
T PRK12422 218 ------------------GATQEEFFHTFNSL---HTE--GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLT 272 (445)
T ss_pred ------------------hhhHHHHHHHHHHH---HHC--CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCC
Confidence 11122222333333 221 2345555555553 56789999 88 4899999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHHH-HhhcCCCCHHHHHHHH
Q 024550 177 PSGFKMLASNYLGIAEHPLFVEIEK-LIATAKVTPADVAEQL 217 (266)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~i~~~l 217 (266)
.+++..|++......+..+..+... ++....-+.+++.+.+
T Consensus 273 ~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l 314 (445)
T PRK12422 273 KEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAL 314 (445)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999988877777666555 5555556666666554
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.5e-14 Score=132.15 Aligned_cols=154 Identities=16% Similarity=0.267 Sum_probs=108.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcE---------------------EEEeCCcccChhhHHHHHHHcc------c
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDV---------------------YDLELSNLLGNNDLRHILIATE------N 82 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~---------------------~~i~~~~~~~~~~l~~~~~~~~------~ 82 (266)
.++.+|||||+|+|||++|+++|+.+.+.- +.++...-.+...++.+...+. .
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~ 118 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSK 118 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCC
Confidence 467799999999999999999999886531 2222221112333555544432 4
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccC
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLR 162 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r 162 (266)
..|++|||+|.|.. ...+.|+..|+.- +..+++|.+|+.++.|++++++
T Consensus 119 ~KV~IIDEa~~LT~---------------------------~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 119 YKIYIIDEVHMLSK---------------------------SAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred CEEEEEEChhhCCH---------------------------HHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh
Confidence 57999999998742 2456677777742 4567888888889999999999
Q ss_pred CCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 163 PGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
|| ..+.|..|+.++....+...+...+..... .+..++...+.+++++...+
T Consensus 168 --Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 168 --RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred --hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88 479999999999999988887766655443 35556666667777665554
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.1e-14 Score=130.49 Aligned_cols=153 Identities=15% Similarity=0.271 Sum_probs=107.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHH---c---
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIA---T--- 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~---~--- 80 (266)
++.+||+||||||||++|+.+|+.+++. +++++...-.+...++.+... .
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~ 117 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPME 117 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhc
Confidence 5689999999999999999999999753 445544322222333333221 1
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
....|++|||+|.+.. ...+.|+..|+.- ...++||++||.+..+.+.+
T Consensus 118 g~~kVIIIDEad~Lt~---------------------------~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR---------------------------EAFNALLKTLEEP----PARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CCceEEEEEChHhCCH---------------------------HHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHH
Confidence 2457999999998742 2346677777652 34588888899888888899
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
.+ || ..|.|+.++.++...++...+...+..+.. .+..++...+.+.+++.+.+
T Consensus 167 ~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lL 221 (624)
T PRK14959 167 VS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLL 221 (624)
T ss_pred Hh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 98 88 468999999999999998887776655543 34445555556666555544
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.55 E-value=1.5e-14 Score=122.42 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=103.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc------EEEEeCCcccChhhH-------HHHHHHc--------ccCCeeeeec
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD------VYDLELSNLLGNNDL-------RHILIAT--------ENKSILVVED 90 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~------~~~i~~~~~~~~~~l-------~~~~~~~--------~~~~vl~iDe 90 (266)
..+|||||||||||+.++++|.+++.+ +.+.+.++..+.+-. ..+.... +..-|++|||
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDE 137 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDE 137 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEec
Confidence 369999999999999999999999662 233344443322111 1111111 1236999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEE
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHI 170 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i 170 (266)
.|.|. ...++.|.+.|+.. +..+.||..||+++.|+..+.+ ||. .+
T Consensus 138 cdsmt---------------------------sdaq~aLrr~mE~~----s~~trFiLIcnylsrii~pi~S--RC~-Kf 183 (346)
T KOG0989|consen 138 CDSMT---------------------------SDAQAALRRTMEDF----SRTTRFILICNYLSRIIRPLVS--RCQ-KF 183 (346)
T ss_pred hhhhh---------------------------HHHHHHHHHHHhcc----ccceEEEEEcCChhhCChHHHh--hHH-Hh
Confidence 99885 33566777888874 2458899999999999999999 995 57
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 171 NMSHCTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 171 ~~~~p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
.|+....+.....++.+-..++.....+. ..++...+.+-++....|
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 88888888777778878888877776544 444443334444333333
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=1.7e-13 Score=132.92 Aligned_cols=172 Identities=16% Similarity=0.258 Sum_probs=113.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhh-------------------HHHHHHHcccCCeeeeecchh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNND-------------------LRHILIATENKSILVVEDIDC 93 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~-------------------l~~~~~~~~~~~vl~iDeid~ 93 (266)
.+||+||||||||++|+++|..++.+++.++++.+..... +...+ .....+||+|||+|.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~-~~~p~~VvllDEiek 564 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAV-RKHPHCVLLLDEIEK 564 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHH-HhCCCeEEEEechhh
Confidence 4899999999999999999999999999999887643211 22221 124579999999997
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCCC------------
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHKE------------ 154 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~~------------ 154 (266)
+.+ ...+.|++.|+...-+. -.+.+||+|||...
T Consensus 565 a~~---------------------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~ 617 (731)
T TIGR02639 565 AHP---------------------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGS 617 (731)
T ss_pred cCH---------------------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcch
Confidence 743 24556666666421111 13578999998531
Q ss_pred -------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCC
Q 024550 155 -------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNE 221 (266)
Q Consensus 155 -------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~ 221 (266)
.+.|.|+. ||+.+|.|...+.++..+|+..++.... ..+...-....++...+..++....
T Consensus 618 ~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~----~~l~~~~~~l~i~~~a~~~La~~~~ 691 (731)
T TIGR02639 618 ENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELS----KQLNEKNIKLELTDDAKKYLAEKGY 691 (731)
T ss_pred hhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHH----HHHHhCCCeEEeCHHHHHHHHHhCC
Confidence 24677777 9999999999999999999998885321 1111100012355554444444445
Q ss_pred CHHHHHHHHHHHHHhhh
Q 024550 222 APEFALSGLIEFLESKK 238 (266)
Q Consensus 222 ~~~~~~~~~~~~~~~~~ 238 (266)
++...++.+..+++..-
T Consensus 692 ~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 692 DEEFGARPLARVIQEEI 708 (731)
T ss_pred CcccCchHHHHHHHHHh
Confidence 56566666666655543
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.1e-13 Score=130.33 Aligned_cols=154 Identities=14% Similarity=0.248 Sum_probs=110.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcE-----------------------------EEEeCCcccChhhHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDV-----------------------------YDLELSNLLGNNDLRHILIAT 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~-----------------------------~~i~~~~~~~~~~l~~~~~~~ 80 (266)
.++++|||||+|+|||++|+++|+.+++.. ++++..+..+-..++.++..+
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~ 124 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESV 124 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHH
Confidence 366899999999999999999999886532 223322222334555555443
Q ss_pred c------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 81 E------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 81 ~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
. ...|++|||+|.+. ....+.|+..|+.- +..++||.+|+.++
T Consensus 125 ~~~P~~a~~KVvIIDEad~Ls---------------------------~~a~naLLKtLEeP----p~~~~fIl~tte~~ 173 (598)
T PRK09111 125 RYRPVSARYKVYIIDEVHMLS---------------------------TAAFNALLKTLEEP----PPHVKFIFATTEIR 173 (598)
T ss_pred HhchhcCCcEEEEEEChHhCC---------------------------HHHHHHHHHHHHhC----CCCeEEEEEeCChh
Confidence 2 45799999999773 22456677777753 34577777888888
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+.+.+.+ || ..++|+.|+.++...++...+...+..+. +.+..++...+.++.++.+.+
T Consensus 174 kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88888998 88 56999999999999999998888776665 344555555666666665554
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.6e-13 Score=126.61 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=105.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+|||||+|+|||++|+.+|+.+++ .++.++.+.-.+...++.+....
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~ 116 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI 116 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc
Confidence 3567999999999999999999998863 23334333222233344443332
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+.. ...+.|+..++.- +..+++|.+|+.++.++++
T Consensus 117 ~~~~KVvIIDEad~Lt~---------------------------~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK---------------------------EAFNALLKTLEEP----PPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred cCCeeEEEEEChhhcCH---------------------------HHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHH
Confidence 2357999999997732 1345566666642 3456777777778888889
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ ||. .+.|+.|+.++...++..++...+..... .+..++...+.+.+++.+.+
T Consensus 166 I~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 166 ILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998 884 69999999999999999888877765543 34455555566666665555
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.53 E-value=3.2e-13 Score=113.36 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=99.2
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhh
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRAR 105 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~ 105 (266)
.....++|+||+|||||++++++++.+ +.+++.+++..+.. .+.......+|+|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~liiDdi~~l~~--------- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------AFDFDPEAELYAVDDVERLDD--------- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------HHhhcccCCEEEEeChhhcCc---------
Confidence 345679999999999999999999876 66788888765531 123344578999999997632
Q ss_pred hcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC-C--CCCcccccCCCcc--eeEEEcCCCCHHHH
Q 024550 106 AANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH-K--ERLDPALLRPGRM--DMHINMSHCTPSGF 180 (266)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~-~--~~ld~al~r~~Rf--~~~i~~~~p~~~~~ 180 (266)
. ....+...++..... ...++|.+++. + ..+.+.|.+ || ...+.++.|+..++
T Consensus 105 ---------------~---~~~~L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~ 162 (227)
T PRK08903 105 ---------------A---QQIALFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADK 162 (227)
T ss_pred ---------------h---HHHHHHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHH
Confidence 1 112233334332221 23334444443 3 234577777 76 57899999999999
Q ss_pred HHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 181 KMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 181 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
..++..+....+..+..+. ..++.....++.++.+++
T Consensus 163 ~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l 200 (227)
T PRK08903 163 IAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALL 200 (227)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 8998887766666665544 444444456666666654
No 115
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-13 Score=131.18 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=131.1
Q ss_pred HhhCHHHHHHhCCCCC----ceeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCcccChhhHHHHHHH---------
Q 024550 16 FLQRKEFYRRVGKAWK----RGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLLGNNDLRHILIA--------- 79 (266)
Q Consensus 16 ~l~~~~~~~~~~~~~~----~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~~~~~l~~~~~~--------- 79 (266)
-+...-...+.|+..| .++||.||.|+|||.+|++||..+. ..++.++++.++....+..++..
T Consensus 502 avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee 581 (786)
T COG0542 502 AVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE 581 (786)
T ss_pred HHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc
Confidence 3333344445565543 3589999999999999999999996 78999999999865555544422
Q ss_pred ---------cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC-------Cc
Q 024550 80 ---------TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG-------DE 143 (266)
Q Consensus 80 ---------~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-------~~ 143 (266)
.+..+||++|||+.. ...+++-||+.||.-.-+.+ .+
T Consensus 582 GG~LTEaVRr~PySViLlDEIEKA---------------------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrN 634 (786)
T COG0542 582 GGQLTEAVRRKPYSVILLDEIEKA---------------------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRN 634 (786)
T ss_pred ccchhHhhhcCCCeEEEechhhhc---------------------------CHHHHHHHHHHhcCCeeecCCCCEEecce
Confidence 124689999999954 35578889999984433332 24
Q ss_pred eEEEEecCCC----------------------------CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc
Q 024550 144 RIIIFTTNHK----------------------------ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL 195 (266)
Q Consensus 144 ~ivi~ttn~~----------------------------~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~ 195 (266)
.+||+|||-- ..+.|.|+. |++.+|.|...+.+...+|+..++....
T Consensus 635 tiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~--- 709 (786)
T COG0542 635 TIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLA--- 709 (786)
T ss_pred eEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHH---
Confidence 6899999931 123677777 9999999999999999999998884321
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 024550 196 FVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLESKK 238 (266)
Q Consensus 196 ~~~~~~l~~~~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (266)
..+..---...++..-...+.-.+.++....+.+..+++..-
T Consensus 710 -~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 710 -KRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred -HHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 222110111236666666666666777777777777666543
No 116
>PRK06620 hypothetical protein; Validated
Probab=99.53 E-value=1.4e-13 Score=114.41 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=93.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDF 111 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~ 111 (266)
+.++||||||||||++++++++..+..++ +.... . .. + .....+|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-~----~~-~--~~~~d~lliDdi~~~~---------------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-N----EE-I--LEKYNAFIIEDIENWQ---------------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-c----hh-H--HhcCCEEEEeccccch----------------
Confidence 67999999999999999999998875332 21111 1 11 1 1345799999999441
Q ss_pred ccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC--CcccccCCCcce--eEEEcCCCCHHHHHHHHHHh
Q 024550 112 LIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER--LDPALLRPGRMD--MHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 112 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~--ld~al~r~~Rf~--~~i~~~~p~~~~~~~i~~~~ 187 (266)
...+..++|.+... ...++|+++..|.. + ++|++ |+. .++.+..|+.+.+..++.+.
T Consensus 99 -----------~~~lf~l~N~~~e~-----g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 99 -----------EPALLHIFNIINEK-----QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred -----------HHHHHHHHHHHHhc-----CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHH
Confidence 11333444544432 34677777766654 4 78888 775 57999999999999999988
Q ss_pred hCCCCCCcHHHHH-HHhhcCCCCHHHHHHHH
Q 024550 188 LGIAEHPLFVEIE-KLIATAKVTPADVAEQL 217 (266)
Q Consensus 188 ~~~~~~~~~~~~~-~l~~~~~~s~~~i~~~l 217 (266)
+...+..+.++.. .++....-+.+.+.+.+
T Consensus 160 ~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 160 FSISSVTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred HHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 8766666655543 44444555666655554
No 117
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.52 E-value=3.5e-13 Score=119.45 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=98.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCcccCh--------------------------hhHHHHHHHc-
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNLLGN--------------------------NDLRHILIAT- 80 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~~~~--------------------------~~l~~~~~~~- 80 (266)
++|||||||||||++++++++++. .+++.+++..+... ..++.+....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 699999999999999999999884 34567776654210 0111111111
Q ss_pred ------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 81 ------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 81 ------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
....+|+|||+|.+.. ...+.|...++... ....+|.+++.+.
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~---------------------------~~~~~L~~~le~~~----~~~~~Il~~~~~~ 166 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRE---------------------------DAQQALRRIMEQYS----RTCRFIIATRQPS 166 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCH---------------------------HHHHHHHHHHHhcc----CCCeEEEEeCChh
Confidence 2356999999997742 11223444444321 2244555666666
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+.+.+.+ |+ ..+.|+.|+.++...++..+....+..+. +.+..++...+.+.+++.+.+
T Consensus 167 ~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 167 KLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77788888 77 56999999999999999998877766554 344555555556666655555
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.6e-13 Score=120.96 Aligned_cols=154 Identities=15% Similarity=0.260 Sum_probs=105.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------EEEEeCCcccChhhHHHHHHHc------ccCCeeeeecc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------VYDLELSNLLGNNDLRHILIAT------ENKSILVVEDI 91 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------~~~i~~~~~~~~~~l~~~~~~~------~~~~vl~iDei 91 (266)
.++++|||||||+|||++++++++.+..+ ++.++.....+...+..++..+ ....|++|||+
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~ 117 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEV 117 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeCh
Confidence 35689999999999999999999987542 2223322222234555555533 23569999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEE
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIN 171 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~ 171 (266)
|.+.. ..++.++..++.. +...++|.+|+.+..+.+++.+ |+. .++
T Consensus 118 ~~l~~---------------------------~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~ 163 (367)
T PRK14970 118 HMLSS---------------------------AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RCQ-IFD 163 (367)
T ss_pred hhcCH---------------------------HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cce-eEe
Confidence 97632 1345566666542 2346677777778888899998 774 589
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 172 MSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 172 ~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
|+.|+.++...++.......+..+. +.+..++...+.+.+.+.+.+
T Consensus 164 ~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~l 210 (367)
T PRK14970 164 FKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIF 210 (367)
T ss_pred cCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999888877776554 444555665666666665554
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.9e-13 Score=124.12 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc-------------------------EEEEeCCcccChhhHHHHHHHc----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD-------------------------VYDLELSNLLGNNDLRHILIAT---- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~---- 80 (266)
.++.+|||||||+|||++|+++|+.+.+. ++.++.....+...++.+....
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~ 117 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP 117 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh
Confidence 35679999999999999999999988542 3344432222223333332221
Q ss_pred --ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 81 --ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 81 --~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
....|++|||+|.+.. ...+.|+..++.- +..+++|++||.+..+.+
T Consensus 118 ~~~~~kvvIIdead~lt~---------------------------~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 118 SKSRYKIYIIDEVHMLTK---------------------------EAFNSLLKTLEEP----PQHVKFFLATTEIHKIPG 166 (451)
T ss_pred hcCCCEEEEEecHHhhCH---------------------------HHHHHHHHHhhcC----CCCceEEEEeCChHhcch
Confidence 3568999999998732 1345677777753 345777888888889999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
++.+ || ..++|+.++.++....+...+...+.... +.+..++...+.+.+.+.+.+
T Consensus 167 tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 167 TILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999 88 46999999999999988888877665554 345556666666666665554
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.7e-13 Score=128.44 Aligned_cols=153 Identities=16% Similarity=0.262 Sum_probs=107.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc--------------------------EEEEeCCcccChhhHHHHHHHcc---
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD--------------------------VYDLELSNLLGNNDLRHILIATE--- 81 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~--------------------------~~~i~~~~~~~~~~l~~~~~~~~--- 81 (266)
.+++|||||+|+|||++|+++|+.+++. +++++.........+++++..+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 4579999999999999999999998652 33444333223445666665442
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
...|++|||+|.|. ....+.||..|+.- +..++||++|+.+..+.+
T Consensus 118 ~~~~~KViIIDEad~Lt---------------------------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 118 VQARWKVYVIDECHMLS---------------------------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLP 166 (620)
T ss_pred hcCCceEEEEECccccC---------------------------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhH
Confidence 35799999999873 22456778877742 345788888888888989
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
++.+ || ..++|+.++.++....+.......+..+. ..+..++...+.+.+++.+.+
T Consensus 167 TIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 167 TIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999 88 56899999999888877777766555544 344455555555555555444
No 121
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.52 E-value=2.2e-13 Score=130.80 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=99.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHH-------cccCCeeeeecchhhHHHhHHHhhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIA-------TENKSILVVEDIDCCIELQDRLSRA 104 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~-------~~~~~vl~iDeid~l~~~~~~~~~~ 104 (266)
.++|||||||||||++|+++|+.++.+++.+++... +...+...+.. .....+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------- 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------- 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------
Confidence 469999999999999999999999999988887643 22233333322 23467999999998742
Q ss_pred hhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecC--CCCCCcccccCCCcceeEEEcCCCCHHHHHH
Q 024550 105 RAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTN--HKERLDPALLRPGRMDMHINMSHCTPSGFKM 182 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn--~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~ 182 (266)
...+.|+..++. ..+++|++|+ ....+++++++ |+ ..+.|+.++.+++..
T Consensus 124 -------------------~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~ 175 (725)
T PRK13341 124 -------------------AQQDALLPWVEN------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQ 175 (725)
T ss_pred -------------------HHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHH
Confidence 122344554443 2466666553 33568899999 76 459999999999999
Q ss_pred HHHHhhC-------CCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 183 LASNYLG-------IAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 183 i~~~~~~-------~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
++++++. .....+.++ +..++.....+.+++.+.+
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~L 218 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNAL 218 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 9998886 233334333 3445554445555555544
No 122
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=6.9e-13 Score=126.42 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=92.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccChh-----------------------hHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGNN-----------------------DLRHIL 77 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~~-----------------------~l~~~~ 77 (266)
...++|+|+||||||++++.+..++ .+.+++++|..+.+.. .+..+|
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 3446799999999999999998766 2567899996654321 122333
Q ss_pred HHc----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC-
Q 024550 78 IAT----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH- 152 (266)
Q Consensus 78 ~~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~- 152 (266)
... ....||+|||||.|... ...++-.|++... ..+..++||+++|.
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK------------------------~QDVLYnLFR~~~----~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITK------------------------TQKVLFTLFDWPT----KINSKLVLIAISNTM 912 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCcc------------------------HHHHHHHHHHHhh----ccCCeEEEEEecCch
Confidence 322 12469999999988531 1223333333322 22356889999985
Q ss_pred --CCCCcccccCCCccee-EEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH
Q 024550 153 --KERLDPALLRPGRMDM-HINMSHCTPSGFKMLASNYLGIAEHPLFVEI 199 (266)
Q Consensus 153 --~~~ld~al~r~~Rf~~-~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~ 199 (266)
+..+++.+.+ ||.. .|.|++++.+++..|+...+......+.++.
T Consensus 913 DLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 913 DLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred hcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 5667788888 6654 4889999999999999988875433333333
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=9e-14 Score=129.69 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=105.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~~ 100 (266)
.++|||++|||||+|+.++++++ +..++++++..+... ..+..+........+|+||||+.+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk--- 392 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK--- 392 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC---
Confidence 49999999999999999999987 467788887665421 112222233456789999999988531
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC---CCCcccccCCCcc--eeEEEcCCC
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK---ERLDPALLRPGRM--DMHINMSHC 175 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~---~~ld~al~r~~Rf--~~~i~~~~p 175 (266)
......+..+++.+. .. ...+||++...| ..+++.|.+ || +..+++..|
T Consensus 393 -------------------e~tqeeLF~l~N~l~---e~--gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~P 446 (617)
T PRK14086 393 -------------------ESTQEEFFHTFNTLH---NA--NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPP 446 (617)
T ss_pred -------------------HHHHHHHHHHHHHHH---hc--CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCC
Confidence 111222333444433 22 234444443344 356789999 66 688899999
Q ss_pred CHHHHHHHHHHhhCCCCCCcHHHHHHHh-hcCCCCHHHHHHHH
Q 024550 176 TPSGFKMLASNYLGIAEHPLFVEIEKLI-ATAKVTPADVAEQL 217 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~i~~~l 217 (266)
+.+.|..|++..+...+..+..++..++ .+..-+.+++..++
T Consensus 447 D~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 447 ELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 9999999999999888877776665544 44556667666655
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=7.6e-14 Score=127.71 Aligned_cols=158 Identities=17% Similarity=0.296 Sum_probs=104.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHc-ccCCeeeeecchhhHHHh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIAT-ENKSILVVEDIDCCIELQ 98 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~-~~~~vl~iDeid~l~~~~ 98 (266)
.+++||||||||||+|++++++++ +..++++++.++... ..+....... ..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 459999999999999999999986 456788887665321 1122222222 257899999999875310
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcc--eeEEEcC
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRM--DMHINMS 173 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf--~~~i~~~ 173 (266)
.....++..+...... ...++|++.+.|.. +.+.+.+ || +..+.+.
T Consensus 211 -------------------------~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~ 261 (440)
T PRK14088 211 -------------------------GVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLE 261 (440)
T ss_pred -------------------------HHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeC
Confidence 0112233333333322 23555555566654 5678888 66 4789999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcHHHHH-HHhhcCCCCHHHHHHHHH
Q 024550 174 HCTPSGFKMLASNYLGIAEHPLFVEIE-KLIATAKVTPADVAEQLM 218 (266)
Q Consensus 174 ~p~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~i~~~l~ 218 (266)
.|+.+.|..|++......+..+.++.. .++....-+.+++...+.
T Consensus 262 ~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 262 PPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 999999999999998877666665554 445555667777776663
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.2e-13 Score=126.56 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=108.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+|||||||+|||++|+++|+.+++. ++.++...-.+-..++.+....
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~ 116 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPA 116 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchh
Confidence 35679999999999999999999998642 3334333222233444444322
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+. ....+.|+..++. ++..+++|++|+.+..+.++
T Consensus 117 ~~~~KVvIIDEa~~Ls---------------------------~~a~naLLK~LEe----pp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS---------------------------NSAFNALLKTIEE----PPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred cCCCEEEEEEChhhcC---------------------------HHHHHHHHHhhcc----CCCCEEEEEecCChHHhHHH
Confidence 245799999999773 2245567777664 34568888888888899999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ ||. .++|..++.++...++.......+..+.. .+..++...+.+++++.+.+
T Consensus 166 I~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 166 IKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999 884 68999999999999998888766655544 34445555666666666554
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.9e-13 Score=126.88 Aligned_cols=155 Identities=12% Similarity=0.216 Sum_probs=107.2
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc--------------------------------EEEEeCCcccChhhHHHH
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD--------------------------------VYDLELSNLLGNNDLRHI 76 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~--------------------------------~~~i~~~~~~~~~~l~~~ 76 (266)
..++++||+||+|||||++|+.+|+.+++. ++.++.....+...++.+
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l 115 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQL 115 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHH
Confidence 346679999999999999999999999762 122222222223445554
Q ss_pred HHHc------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec
Q 024550 77 LIAT------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT 150 (266)
Q Consensus 77 ~~~~------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt 150 (266)
.... ...-|++|||+|.+.. ...+.|+..|+.- +...++|.+|
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~Lt~---------------------------~a~naLLK~LEeP----p~~tv~IL~t 164 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHMLST---------------------------AAFNAFLKTLEEP----PPHAIFIFAT 164 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhcCH---------------------------HHHHHHHHHHhCC----CCCeEEEEEe
Confidence 4433 2457999999997732 2345677777753 3446777777
Q ss_pred CCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 151 NHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 151 n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+..+.+++.+ |+ ..++|..++.++....+...+...+..+. +.+..++...+.+.+++.+.+
T Consensus 165 ~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 165 TELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred CChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 778888899998 87 67999999999999888888877665554 445556666666666665543
No 127
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.8e-13 Score=123.91 Aligned_cols=154 Identities=12% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc--------------------------------EEEEeCCcccChhhHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD--------------------------------VYDLELSNLLGNNDLRHIL 77 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~--------------------------------~~~i~~~~~~~~~~l~~~~ 77 (266)
.++.+|||||||+|||++|+++|+.+.+. ++.++.....+...++.+.
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~ 116 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLR 116 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHH
Confidence 46679999999999999999999999662 2223222222234455444
Q ss_pred HHc------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecC
Q 024550 78 IAT------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTN 151 (266)
Q Consensus 78 ~~~------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn 151 (266)
... ....|++|||+|.+.. ...+.|+..++.- +...++|.+|+
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~l~~---------------------------~~~~~LLk~LEep----~~~t~~Il~t~ 165 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHMLSI---------------------------AAFNAFLKTLEEP----PPHAIFIFATT 165 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhhCCH---------------------------HHHHHHHHHHhcC----CCCeEEEEEeC
Confidence 443 2357999999997732 2345567776642 34566777777
Q ss_pred CCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 152 HKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 152 ~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+..+.+++.+ |+. .++|+.++.++....+...+...+..+. +.+..++...+.+...+.+.+
T Consensus 166 ~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 166 ELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred ChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77888889988 874 6999999999999888888877665554 444556666666676666544
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.2e-13 Score=123.65 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=112.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHc-----
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
.++.+|||||+|+|||++|+++|+.+.+ .++.++.+.-.+-..++.+....
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~ 114 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPS 114 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcc
Confidence 4667899999999999999999998742 24444443322334566655442
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.+. ....+.|+..|+.- +..+.||.+|+.+..+.++
T Consensus 115 ~~~~KVvIIDEad~Lt---------------------------~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 115 MARFKIFIIDEVHMLT---------------------------KEAFNALLKTLEEP----PSYVKFILATTDPLKLPAT 163 (535)
T ss_pred cCCeEEEEEECcccCC---------------------------HHHHHHHHHHHhhc----CCceEEEEEECChhhCchH
Confidence 234699999999773 23456677777753 3456777777888999999
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ |+ ..++|..++.++....+...+...+.... ..+..++...+.+++++.+.+
T Consensus 164 I~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 164 ILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 999 87 57999999999999999988888776664 445566666677777777766
No 129
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.49 E-value=2.1e-13 Score=120.71 Aligned_cols=131 Identities=25% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHH--HH----------ccc---C---Ceeeeecc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHIL--IA----------TEN---K---SILVVEDI 91 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~--~~----------~~~---~---~vl~iDei 91 (266)
....+||.||||||||++++++|..++.+++.++|.......++...+ .. .+. . +|+++|||
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI 121 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI 121 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence 456799999999999999999999999999999999766544432111 10 011 1 39999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc-------cc-cCCCCceEEEEecC-----CCCCCcc
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG-------LW-SSCGDERIIIFTTN-----HKERLDP 158 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~-~~~~~~~ivi~ttn-----~~~~ld~ 158 (266)
+... ..+.+.|+..|+. .. ...+.+.++|+|+| ....+++
T Consensus 122 nra~---------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~e 174 (329)
T COG0714 122 NRAP---------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPE 174 (329)
T ss_pred ccCC---------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCH
Confidence 9653 3355556655543 11 22235678888889 4467899
Q ss_pred cccCCCcceeEEEcCCCCHH-HHHHHHHHhhC
Q 024550 159 ALLRPGRMDMHINMSHCTPS-GFKMLASNYLG 189 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~-~~~~i~~~~~~ 189 (266)
++++ ||.+.+.++.|+.+ +...+..+.-.
T Consensus 175 A~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 175 ALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred HHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 9999 99999999999554 44444444443
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=2e-13 Score=125.19 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=105.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh---------hhHHHHHHHcccCCeeeeecchhhHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN---------NDLRHILIATENKSILVVEDIDCCIEL 97 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~---------~~l~~~~~~~~~~~vl~iDeid~l~~~ 97 (266)
..++||||+|||||+|++++++++ +..++++++..+... ..+...........+|+|||++.+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~- 220 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY- 220 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC-
Confidence 459999999999999999999965 467778887665421 11222333345678999999998743
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC---CCcccccCCCcc--eeEEEc
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE---RLDPALLRPGRM--DMHINM 172 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~---~ld~al~r~~Rf--~~~i~~ 172 (266)
.......+..+++.+... ...+|+++...|. .+++.|.+ || +.++.+
T Consensus 221 ---------------------k~~~~e~lf~l~N~~~~~-----~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L 272 (450)
T PRK14087 221 ---------------------KEKTNEIFFTIFNNFIEN-----DKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAI 272 (450)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHc-----CCcEEEECCCCHHHHhhccHHHHH--HHhCCceecc
Confidence 111223344444444322 2334444444553 45788998 76 588999
Q ss_pred CCCCHHHHHHHHHHhhCCCCC--CcHH-HHHHHhhcCCCCHHHHHHHHH
Q 024550 173 SHCTPSGFKMLASNYLGIAEH--PLFV-EIEKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 173 ~~p~~~~~~~i~~~~~~~~~~--~~~~-~~~~l~~~~~~s~~~i~~~l~ 218 (266)
..|+.+++.+|+++.+...+. .+.+ .+..++....-+++.+..+|.
T Consensus 273 ~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 273 QKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999999999999999876553 3444 445556667778888877763
No 131
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=1.7e-12 Score=117.64 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=88.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChh--------------------hHHHHH-------H
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNN--------------------DLRHIL-------I 78 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~--------------------~l~~~~-------~ 78 (266)
+.+++||||||||||++++.+++.+ +..+++++|....+.. ....++ .
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999877 5778888886543210 111111 1
Q ss_pred HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC---CC
Q 024550 79 ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK---ER 155 (266)
Q Consensus 79 ~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~---~~ 155 (266)
....+.||+|||+|.+.. ......+..+++.++... +.++.+|+++|.. +.
T Consensus 135 ~~~~~~viviDE~d~l~~-----------------------~~~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 135 ERDRVLIVALDDINYLFE-----------------------KEGNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCEEEEEECCHhHhhc-----------------------cCCchHHHHHHHhhhccC---CCeEEEEEEECCcchhhh
Confidence 122457999999998851 111224445555444331 2357788888765 35
Q ss_pred CcccccCCCcce-eEEEcCCCCHHHHHHHHHHhhC
Q 024550 156 LDPALLRPGRMD-MHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
+++.+.+ ||. ..|.|+.++.++...|+...+.
T Consensus 189 l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 189 LDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred cCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 6777776 553 5789999999999999988774
No 132
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.48 E-value=5.3e-14 Score=108.99 Aligned_cols=105 Identities=32% Similarity=0.412 Sum_probs=70.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHH---------------HcccCCeeeeecchhhHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILI---------------ATENKSILVVEDIDCCIEL 97 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~---------------~~~~~~vl~iDeid~l~~~ 97 (266)
+++|+||||||||++++.+|..++.+++.++++...+...+...+. ...++++++|||++....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~- 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP- 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH-
Confidence 4899999999999999999999999999999998776544332111 112578999999996532
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc----------ccCCC-----CceEEEEecCCCC----CCcc
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL----------WSSCG-----DERIIIFTTNHKE----RLDP 158 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~-----~~~ivi~ttn~~~----~ld~ 158 (266)
.++..++..++.- ..... .+..+|+|+|... .+++
T Consensus 80 --------------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~ 133 (139)
T PF07728_consen 80 --------------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSP 133 (139)
T ss_dssp --------------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCH
T ss_pred --------------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCH
Confidence 1222222222210 00001 1489999999887 8999
Q ss_pred cccCCCcc
Q 024550 159 ALLRPGRM 166 (266)
Q Consensus 159 al~r~~Rf 166 (266)
+|++ ||
T Consensus 134 al~~--Rf 139 (139)
T PF07728_consen 134 ALLD--RF 139 (139)
T ss_dssp HHHT--T-
T ss_pred HHHh--hC
Confidence 9999 87
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.48 E-value=6.3e-13 Score=102.50 Aligned_cols=115 Identities=31% Similarity=0.411 Sum_probs=78.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHH-----------HHHHcccCCeeeeecchhhH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRH-----------ILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~-----------~~~~~~~~~vl~iDeid~l~ 95 (266)
..+.++++||||||||++++.++..+ +.+++.+++........... .......+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35679999999999999999999998 88999999887654322221 11223468999999999772
Q ss_pred HHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC--CCCceEEEEecCCCC--CCcccccCCCcceeEEE
Q 024550 96 ELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS--CGDERIIIFTTNHKE--RLDPALLRPGRMDMHIN 171 (266)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~ivi~ttn~~~--~ld~al~r~~Rf~~~i~ 171 (266)
. .....++..+...... ...++.+|+++|... .+++.+.+ ||+..+.
T Consensus 98 ~---------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~ 148 (151)
T cd00009 98 R---------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIV 148 (151)
T ss_pred H---------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEee
Confidence 2 0112233333322211 124577888888776 67788888 9987777
Q ss_pred cC
Q 024550 172 MS 173 (266)
Q Consensus 172 ~~ 173 (266)
++
T Consensus 149 ~~ 150 (151)
T cd00009 149 IP 150 (151)
T ss_pred cC
Confidence 76
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.47 E-value=4.6e-13 Score=122.74 Aligned_cols=153 Identities=15% Similarity=0.279 Sum_probs=110.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE------------------------EEEeCCcccChhhHHHHHHHcc-----
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV------------------------YDLELSNLLGNNDLRHILIATE----- 81 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~------------------------~~i~~~~~~~~~~l~~~~~~~~----- 81 (266)
.+++||+||.|||||++||.+|+.+++.- ++++..+-.+-.+++.+.....
T Consensus 38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~ 117 (515)
T COG2812 38 AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE 117 (515)
T ss_pred hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcc
Confidence 46799999999999999999999986542 2222222223345566655542
Q ss_pred -cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 82 -NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 82 -~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
+.-|.+|||+|.|. ....+.||..++ .++..++||.+|..++.++..+
T Consensus 118 ~ryKVyiIDEvHMLS---------------------------~~afNALLKTLE----EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 118 GRYKVYIIDEVHMLS---------------------------KQAFNALLKTLE----EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccceEEEEecHHhhh---------------------------HHHHHHHhcccc----cCccCeEEEEecCCcCcCchhh
Confidence 45799999999874 335566777666 4566799999999999999999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~i~~~l 217 (266)
++ || ..+.|...+.++....+..++..++.....+. ..++.....|.+|...+|
T Consensus 167 lS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslL 221 (515)
T COG2812 167 LS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLL 221 (515)
T ss_pred hh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHH
Confidence 99 98 56999999999999999999998877665443 334444445555544443
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.2e-12 Score=124.01 Aligned_cols=153 Identities=16% Similarity=0.281 Sum_probs=106.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc-------------------------EEEEeCCcccChhhHHHHHHHc-----
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD-------------------------VYDLELSNLLGNNDLRHILIAT----- 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~----- 80 (266)
++.+|||||+|+|||++++.+|+.+++. ++.++.....+...++.+....
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~ 117 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA 117 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc
Confidence 5678999999999999999999988532 2333433223334444444332
Q ss_pred -ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccc
Q 024550 81 -ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPA 159 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~a 159 (266)
....|++|||+|.|.. ...+.|+..++.- +...+||.+++..+.+.+.
T Consensus 118 ~~~~kVvIIDEa~~L~~---------------------------~a~naLLk~LEep----p~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 118 LARYKVYIIDEVHMLST---------------------------AAFNALLKTLEEP----PPHAIFILATTEVHKVPAT 166 (585)
T ss_pred cCCeEEEEEeChHhCCH---------------------------HHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHH
Confidence 2457999999997732 2355677777653 2457777777878888888
Q ss_pred ccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+ || ..+.|+.++..+...++..++...+..+.. .+..++...+.++.++.+.+
T Consensus 167 I~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 888 87 468999999999999888888777655543 34555656666777666655
No 136
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.45 E-value=1.7e-12 Score=105.77 Aligned_cols=124 Identities=20% Similarity=0.311 Sum_probs=88.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcc-cChhhHHHHHHHcc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNL-LGNNDLRHILIATE--- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~-~~~~~l~~~~~~~~--- 81 (266)
.++.+|||||+|+|||++++.+++.+... +..+..... .+...++.+...+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999987542 333333221 12334544444332
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
...|++|||+|.+.. ...+.|+..|+.- +...++|.+|+.+..+.+
T Consensus 93 ~~~~~kviiide~~~l~~---------------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------------------AAANALLKTLEEP----PPNTLFILITPSPEKLLP 141 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChH
Confidence 357999999998742 2345577777652 345677777888899999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHh
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~ 187 (266)
++.+ |+ ..++|+.|+.++...++...
T Consensus 142 ~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 142 TIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 9999 87 57999999999998888776
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=123.04 Aligned_cols=154 Identities=14% Similarity=0.251 Sum_probs=111.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC-------------------------cEEEEeCCcccChhhHHHHHHHcc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF-------------------------DVYDLELSNLLGNNDLRHILIATE--- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~-------------------------~~~~i~~~~~~~~~~l~~~~~~~~--- 81 (266)
.++.+|||||+|+|||++++.+|+.+.+ .++.+++....+...++.+...+.
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P 117 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPP 117 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCc
Confidence 4667999999999999999999998753 344454443323345555554432
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
..-|++|||+|.+. ....+.|+..|+.- +...++|.+|+.+..+.+
T Consensus 118 ~~~~~KVvIIdea~~Ls---------------------------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLS---------------------------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILP 166 (614)
T ss_pred ccCCcEEEEEECcccCC---------------------------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchH
Confidence 35699999999773 22456677777753 345777777777788999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
++.+ || ..++|..++.++....+...+...+..... .+..++...+.+.+++.+.+
T Consensus 167 tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 167 TILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred HHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999 88 559999999999999998888777766654 45666666677777666554
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=1.7e-12 Score=127.57 Aligned_cols=172 Identities=15% Similarity=0.265 Sum_probs=109.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHH---------------H---HcccCCeeeeecc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHIL---------------I---ATENKSILVVEDI 91 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~---------------~---~~~~~~vl~iDei 91 (266)
.+||+||+|||||++|+++|..+ +.+++.++++.+........++ . .....+||+|||+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeeh
Confidence 58999999999999999999987 4578889888765322222221 1 1224589999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCC-----------
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHK----------- 153 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~----------- 153 (266)
+.+.+ ...+.|++.++.-.-.. -.+.+||+|||..
T Consensus 680 eka~~---------------------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~ 732 (857)
T PRK10865 680 EKAHP---------------------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGEL 732 (857)
T ss_pred hhCCH---------------------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhcccc
Confidence 97642 24556666665321111 1346789999862
Q ss_pred --------------CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHc
Q 024550 154 --------------ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMR 219 (266)
Q Consensus 154 --------------~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~ 219 (266)
..+.|+|+. |++.++.|.+++.+...+|+..++.... ..+...-....+++..+..+...
T Consensus 733 ~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~----~rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 733 DYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLY----KRLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred chHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHH----HHHHhCCCcCcCCHHHHHHHHHc
Confidence 124578888 9999999999999999999988884421 11111101123555555544444
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 024550 220 NEAPEFALSGLIEFLESK 237 (266)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~ 237 (266)
+.++...++.+..+++..
T Consensus 807 gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 807 GYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred CCCccCChHHHHHHHHHH
Confidence 556555555555555544
No 139
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=2.3e-12 Score=115.07 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=59.8
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC------CCceEEEEecC---
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC------GDERIIIFTTN--- 151 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~ivi~ttn--- 151 (266)
.+.+|+||||||.++.... +. ..+....-++..||..+++..-.. ...++||++.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~--~~-------------~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~ 310 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGE--SS-------------GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQL 310 (441)
T ss_pred HcCCEEEEEchhhhcccCC--CC-------------CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCC
Confidence 3578999999999985321 00 112333457777888887643221 14567777553
Q ss_pred -CCCCCcccccCCCcceeEEEcCCCCHHHHHHHH
Q 024550 152 -HKERLDPALLRPGRMDMHINMSHCTPSGFKMLA 184 (266)
Q Consensus 152 -~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~ 184 (266)
.|.+|-|.|.- ||...+.+..++.++...|+
T Consensus 311 ~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 311 AKPSDLIPELQG--RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred CChhhccHHHhC--ccceEEECCCCCHHHHHHHh
Confidence 45667788887 99999999999999987776
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=1.1e-12 Score=117.16 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=59.7
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC------CCceEEEEecC----
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC------GDERIIIFTTN---- 151 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~ivi~ttn---- 151 (266)
+.+|+||||||.++..... . ..+....-++..||..++|..-.. ...++||++--
T Consensus 249 ~~GIVfiDEiDKIa~~~~~--~-------------~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~ 313 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGS--S-------------GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS 313 (443)
T ss_pred cCCEEEEEcchhhcccCCC--C-------------CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC
Confidence 5789999999999863211 0 112333457777888887632211 14567777543
Q ss_pred CCCCCcccccCCCcceeEEEcCCCCHHHHHHHH
Q 024550 152 HKERLDPALLRPGRMDMHINMSHCTPSGFKMLA 184 (266)
Q Consensus 152 ~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~ 184 (266)
.|.+|-|.|.- ||...+.+..++.++...|+
T Consensus 314 kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 314 KPSDLIPELQG--RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred ChhhccHHHhC--ccceEEECCCCCHHHHHHHh
Confidence 45667788887 99999999999999987776
No 141
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=8.1e-12 Score=110.04 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=102.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCc---ccChhhHHHHHHHcc-
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSN---LLGNNDLRHILIATE- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~---~~~~~~l~~~~~~~~- 81 (266)
.++++||+||+|+|||++|+++|+.+.+ .++.+.... ..+-..++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4668999999999999999999998854 344444321 123345555544332
Q ss_pred -----cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 82 -----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 82 -----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
..-|++||++|.|- ....+.||+.|+. ++.+.+||.+|+.++.+
T Consensus 101 ~~~~~~~kv~iI~~a~~m~---------------------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN---------------------------RNAANALLKSLEE----PSGDTVLLLISHQPSRL 149 (328)
T ss_pred ccccCCCeEEEECChhhCC---------------------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhC
Confidence 35688999999874 3355778887775 34578999999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAE 215 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~ 215 (266)
.+++++ || ..+.|+.|+.++....+....+.. ...+...++...+.+|.....
T Consensus 150 l~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~~---~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 150 LPTIKS--RC-QQQACPLPSNEESLQWLQQALPES---DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred cHHHHh--hc-eeeeCCCcCHHHHHHHHHHhcccC---ChHHHHHHHHHcCCCHHHHHH
Confidence 999999 98 459999999999888777654211 123333444444555554443
No 142
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=2.7e-12 Score=121.92 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=100.4
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC-hhhHH----------------HHHH---
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG-NNDLR----------------HILI--- 78 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~-~~~l~----------------~~~~--- 78 (266)
+.+..++|+||||||||++|++++... +.+++.+++..+.. ...+. ..+.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~g 252 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETG 252 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcC
Confidence 445679999999999999999998655 35788888876521 11110 0011
Q ss_pred ---------HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEE-
Q 024550 79 ---------ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIF- 148 (266)
Q Consensus 79 ---------~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~- 148 (266)
....+++|||||++.|.......-...-....+.+.+...+.........+...++. .....+++|+
T Consensus 253 l~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~VLI~a 329 (615)
T TIGR02903 253 VPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEE---GAPADFVLIGA 329 (615)
T ss_pred CCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhccc---CccceEEEEEe
Confidence 012468999999998854222111100000000000000000000000001011111 1112355555
Q ss_pred ecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHH
Q 024550 149 TTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 149 ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~ 216 (266)
||+.+..++++|.+ ||. .+.|+.++.+++..|+++++...+..+..+...++......++...+.
T Consensus 330 Tt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~~gRraln~ 394 (615)
T TIGR02903 330 TTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNI 394 (615)
T ss_pred ccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCCcHHHHHHH
Confidence 55678889999999 986 578999999999999999887655445555555555544444444443
No 143
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=3.9e-12 Score=109.86 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=64.2
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC----------
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH---------- 152 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~---------- 152 (266)
|+||||||++.|. -...+.|-..|+.-.. .++|.+||+
T Consensus 292 pGVLFIDEvHmLD---------------------------IE~FsFlnrAlEse~a-----PIii~AtNRG~~kiRGTd~ 339 (450)
T COG1224 292 PGVLFIDEVHMLD---------------------------IECFSFLNRALESELA-----PIIILATNRGMTKIRGTDI 339 (450)
T ss_pred cceEEEechhhhh---------------------------HHHHHHHHHHhhcccC-----cEEEEEcCCceeeecccCC
Confidence 6899999998773 1233344455554322 466777774
Q ss_pred --CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc
Q 024550 153 --KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT 205 (266)
Q Consensus 153 --~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 205 (266)
|..+|..|+. |+ ..|...+++.++.+.|++.....+...+.++.-+++..
T Consensus 340 ~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ 391 (450)
T COG1224 340 ESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTD 391 (450)
T ss_pred cCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHh
Confidence 6788999999 98 77999999999999999999988887777665544443
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.44 E-value=1.6e-12 Score=108.92 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=91.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFL 112 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 112 (266)
.++||||+|+|||||+++++...+..+ ++...+. . +.+.... ..+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~-~----~~~~~~~-~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIG-S----DAANAAA-EGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcc-h----HHHHhhh-cCeEEEECCCCCCC----------------
Confidence 499999999999999999998876653 3332221 1 1111212 26889999996521
Q ss_pred cccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcce--eEEEcCCCCHHHHHHHHHHh
Q 024550 113 IAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRMD--MHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 113 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~~~~~i~~~~ 187 (266)
....+..+++.+.. . ...++|+++..|.. ..+.|.+ ||. .++++..|+.+.+.++++++
T Consensus 102 ---------~~~~lf~l~n~~~~---~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 102 ---------DETGLFHLINSVRQ---A--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred ---------CHHHHHHHHHHHHh---C--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHH
Confidence 11223334444332 2 34566666655542 3678888 764 88999999999999999999
Q ss_pred hCCCCCCcHHHHH-HHhhcCCCCHHHHHH
Q 024550 188 LGIAEHPLFVEIE-KLIATAKVTPADVAE 215 (266)
Q Consensus 188 ~~~~~~~~~~~~~-~l~~~~~~s~~~i~~ 215 (266)
+...+..+.++.. .++....-+.+.+..
T Consensus 166 ~~~~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 9887766665553 344444444444443
No 145
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.44 E-value=3.2e-12 Score=112.36 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=99.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCcccChhhHHHHHH----Hc----ccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNLLGNNDLRHILI----AT----ENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~~~~~~l~~~~~----~~----~~~~vl~iDeid~l~~~~~ 99 (266)
.++||||||||||++++++++.+. ..++.++++.......+...+. .. ..+.+++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--- 116 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--- 116 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---
Confidence 589999999999999999999873 3445555443322222222221 11 1246999999998742
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
.....|+..++.. .....+|.++|.+..+.+++.+ |+. .++|+.|+.++
T Consensus 117 ------------------------~~~~~L~~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~e 165 (319)
T PRK00440 117 ------------------------DAQQALRRTMEMY----SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEA 165 (319)
T ss_pred ------------------------HHHHHHHHHHhcC----CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHH
Confidence 1123344444432 2335667777887888888888 875 59999999999
Q ss_pred HHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 180 FKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 180 ~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
...++..++...+..+. ..+..++...+.+++.+.+.+
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998887776554 444555555555655555544
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=2.6e-12 Score=126.45 Aligned_cols=129 Identities=20% Similarity=0.363 Sum_probs=92.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHH---------------HH---HcccCCeeeeec
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHI---------------LI---ATENKSILVVED 90 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~~~~vl~iDe 90 (266)
..+||+||+|||||++|+++|..+ +.+++.++++.+........+ +. .....+||+|||
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEec
Confidence 459999999999999999999987 468899998876543222211 11 123468999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCCC---------
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHKE--------- 154 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~~--------- 154 (266)
|+.+. ....+.|++.|+.-.-.. -.+.+||+|||...
T Consensus 676 ieka~---------------------------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~ 728 (852)
T TIGR03346 676 VEKAH---------------------------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGG 728 (852)
T ss_pred cccCC---------------------------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhccc
Confidence 99764 235566777775321111 13578999999621
Q ss_pred ----------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 155 ----------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 155 ----------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
.+.|.|+. |++.++.|.+++.+....|+..++.
T Consensus 729 ~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 729 DDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 13467777 9999999999999999999887774
No 147
>PHA02244 ATPase-like protein
Probab=99.42 E-value=8.7e-13 Score=116.07 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=79.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCc----cc----ChhhH--HHHHHHcccCCeeeeecchhhHHHhHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSN----LL----GNNDL--RHILIATENKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~----~~----~~~~l--~~~~~~~~~~~vl~iDeid~l~~~~~~ 100 (266)
+..+||+||||||||++|+++|..++.+++.++... +. ....+ ..++.....+++|+|||++.+.+...
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq- 197 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEAL- 197 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHH-
Confidence 446999999999999999999999999999887431 10 00111 13333456789999999997743111
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhh-----hhhhccccCCCCceEEEEecCCC-----------CCCcccccCCC
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLL-----NFIDGLWSSCGDERIIIFTTNHK-----------ERLDPALLRPG 164 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-----~~l~~~~~~~~~~~ivi~ttn~~-----------~~ld~al~r~~ 164 (266)
..++.++ ..+.+.. ....++.+|+|+|.+ ..+++++++
T Consensus 198 -----------------------~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD-- 251 (383)
T PHA02244 198 -----------------------IIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD-- 251 (383)
T ss_pred -----------------------HHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--
Confidence 1111111 1111111 123467899999973 567999999
Q ss_pred cceeEEEcCCCCH
Q 024550 165 RMDMHINMSHCTP 177 (266)
Q Consensus 165 Rf~~~i~~~~p~~ 177 (266)
|| ..|+|+.|+.
T Consensus 252 RF-v~I~~dyp~~ 263 (383)
T PHA02244 252 RF-APIEFDYDEK 263 (383)
T ss_pred hc-EEeeCCCCcH
Confidence 99 5699999984
No 148
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1e-11 Score=110.82 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=91.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc-----EEEEeCCcccChhhH-------------------------HHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD-----VYDLELSNLLGNNDL-------------------------RHILIAT 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~-----~~~i~~~~~~~~~~l-------------------------~~~~~~~ 80 (266)
|.++++|||||||||.+++.++.++..+ +++++|....+...+ .+.+...
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4469999999999999999999988544 889999877643221 1112222
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC---CCCc
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK---ERLD 157 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~---~~ld 157 (266)
....|++|||+|.|.. .. ...+-.|+.. .......+.+|+.+|.. +.++
T Consensus 122 ~~~~IvvLDEid~L~~-----------------------~~-~~~LY~L~r~----~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 122 GKTVIVILDEVDALVD-----------------------KD-GEVLYSLLRA----PGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred CCeEEEEEcchhhhcc-----------------------cc-chHHHHHHhh----ccccceeEEEEEEeccHHHHHHhh
Confidence 3467999999999964 11 1233333333 22224567899999875 5778
Q ss_pred ccccCCCcce-eEEEcCCCCHHHHHHHHHHhhC
Q 024550 158 PALLRPGRMD-MHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 158 ~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
+.+.+ +++ ..|.||+++.+|...|+.....
T Consensus 174 ~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 174 PRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 88887 554 4599999999999999987775
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=4.6e-12 Score=124.39 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=107.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHH----------------HHH--HcccCCeeeeecc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRH----------------ILI--ATENKSILVVEDI 91 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~----------------~~~--~~~~~~vl~iDei 91 (266)
.+||+||+|||||++|+++|..+ ..+++.++++.+.....+.. +.. ...+.+|++|||+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 48999999999999999999988 35788888877643222211 111 1234589999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC-------CCCceEEEEecCCCCC---------
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-------CGDERIIIFTTNHKER--------- 155 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~ivi~ttn~~~~--------- 155 (266)
|.+.+ ...+.|++.|+.-.-+ ...+.+||+|||....
T Consensus 621 eka~~---------------------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~ 673 (821)
T CHL00095 621 EKAHP---------------------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGL 673 (821)
T ss_pred hhCCH---------------------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcccc
Confidence 97643 3456666666632110 0145789999884311
Q ss_pred ----------------------------CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCC
Q 024550 156 ----------------------------LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAK 207 (266)
Q Consensus 156 ----------------------------ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 207 (266)
+.|.|+. |++.+|.|...+.++..+|+...+.... ..+...--...
T Consensus 674 gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~----~rl~~~~i~l~ 747 (821)
T CHL00095 674 GFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLF----KRLNEQGIQLE 747 (821)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHH----HHHHHCCcEEE
Confidence 2356777 9999999999999999999988874321 11111000123
Q ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 024550 208 VTPADVAEQLMRNEAPEFALSGLIEFLESK 237 (266)
Q Consensus 208 ~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 237 (266)
+++..+..+...+.++...++.+..+++..
T Consensus 748 ~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 748 VTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred ECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 555544444443445555555555555443
No 150
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=5.9e-11 Score=104.37 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC--------cEEEEeCC--cccChhhHHHHHHHc------ccCCeeeeecchh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF--------DVYDLELS--NLLGNNDLRHILIAT------ENKSILVVEDIDC 93 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~--------~~~~i~~~--~~~~~~~l~~~~~~~------~~~~vl~iDeid~ 93 (266)
.++.+|||||+|+|||++|+++|+.+.+ .++.+... ...+...++.+.... ...-|++||++|.
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~ 104 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEK 104 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhh
Confidence 4668999999999999999999997733 23334331 111234455555432 2357999999997
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMS 173 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~ 173 (266)
+. ....+.|+..++. ++...++|.+|+.++.+.+++.+ || ..++|+
T Consensus 105 m~---------------------------~~a~naLLK~LEe----pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~ 150 (313)
T PRK05564 105 MT---------------------------EQAQNAFLKTIEE----PPKGVFIILLCENLEQILDTIKS--RC-QIYKLN 150 (313)
T ss_pred cC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCC
Confidence 73 2245677777774 34567777777888999999999 88 579999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 174 HCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 174 ~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.|+.++....+...+.. .....+..++...+.++..+....
T Consensus 151 ~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 151 RLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred CcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999988887765532 123445555655566666655443
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.37 E-value=6.6e-12 Score=123.11 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=89.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChh-------------------hHHHHHHHcccCCeeeeec
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNN-------------------DLRHILIATENKSILVVED 90 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~-------------------~l~~~~~~~~~~~vl~iDe 90 (266)
.+||+||||||||++|+++|..+ ...++.++++.+.... .+...+. ..+.+||+|||
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~-~~p~svvllDE 676 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR-RKPYSVVLLDE 676 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH-hCCCcEEEEec
Confidence 38999999999999999999998 3577888877654221 1222222 25679999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCC----------
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHK---------- 153 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~---------- 153 (266)
|+.+.+ ...+.|++.++...-.. -.+.+||+|||..
T Consensus 677 ieka~~---------------------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~ 729 (852)
T TIGR03345 677 VEKAHP---------------------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCAD 729 (852)
T ss_pred hhhcCH---------------------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccC
Confidence 996532 34455666665332111 1357899999842
Q ss_pred -------------------CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 154 -------------------ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 154 -------------------~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
..+.|+|+. |++ .|.|...+.++..+|+...+..
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 730 PETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred cccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 114677788 997 7999999999999999888743
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=7.4e-11 Score=104.84 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc-------E-----------------------EEEeCC--c-------ccCh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD-------V-----------------------YDLELS--N-------LLGN 70 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~-------~-----------------------~~i~~~--~-------~~~~ 70 (266)
.++.+||+||+|+|||++++.+|+.+.+. . +.+... . ..+-
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v 123 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV 123 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH
Confidence 35679999999999999999999988551 1 111100 0 0001
Q ss_pred hhHHHH---HHHc---ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCce
Q 024550 71 NDLRHI---LIAT---ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDER 144 (266)
Q Consensus 71 ~~l~~~---~~~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 144 (266)
..++.+ +... ....|++|||+|.|. ....+.||..++.- +...
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------------------------~~aanaLLk~LEEp----p~~~ 172 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------------------------RNAANAILKTLEEP----PARA 172 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcC---------------------------HHHHHHHHHHHhcC----CCCc
Confidence 122222 2221 135699999999773 22445677777652 3456
Q ss_pred EEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 145 IIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 145 ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
++|..|+.+..+.+.+.+ || ..+.|+.|+.++...++........ .....+..++...+.+|....+++
T Consensus 173 ~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 777777888888999999 88 6899999999999999987432222 113345556666677777766665
No 153
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.36 E-value=4.8e-12 Score=110.61 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=52.8
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC----------
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH---------- 152 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~---------- 152 (266)
|+||||||++.|. -...+.|-+.|+.-. ..++|.+||+
T Consensus 279 pGVLFIDEvHmLD---------------------------iEcFsfLnralEs~~-----sPiiIlATNRg~~~irGt~~ 326 (398)
T PF06068_consen 279 PGVLFIDEVHMLD---------------------------IECFSFLNRALESEL-----SPIIILATNRGITKIRGTDI 326 (398)
T ss_dssp E-EEEEESGGGSB---------------------------HHHHHHHHHHHTSTT-------EEEEEES-SEEE-BTTS-
T ss_pred cceEEecchhhcc---------------------------HHHHHHHHHHhcCCC-----CcEEEEecCceeeeccCccC
Confidence 6899999999773 122333334444332 2466777773
Q ss_pred --CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHh
Q 024550 153 --KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLI 203 (266)
Q Consensus 153 --~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 203 (266)
|..+|..|+. |+ ..|...+++.++..+|++.....++..+.++.-.++
T Consensus 327 ~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L 376 (398)
T PF06068_consen 327 ISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLL 376 (398)
T ss_dssp EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHH
T ss_pred cCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHH
Confidence 5678889999 98 789999999999999999999888888876654433
No 154
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.9e-12 Score=116.56 Aligned_cols=182 Identities=29% Similarity=0.371 Sum_probs=137.8
Q ss_pred HhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHcc--cCCeee
Q 024550 16 FLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIATE--NKSILV 87 (266)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~~--~~~vl~ 87 (266)
++..+..+...+..++++++++||||||||+++++++.. +..+..++...... ...+..+|..+. .+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 456778899999999999999999999999999999998 55555555444332 344556665554 469999
Q ss_pred eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcce
Q 024550 88 VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMD 167 (266)
Q Consensus 88 iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~ 167 (266)
+|++|.+.+.+.. . .......+...++..+++.. .+. +++++.||.+..+++++.+||||+
T Consensus 82 ~d~~~~~~~~~~~-~---------------~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~ 142 (494)
T COG0464 82 IDEIDALAPKRSS-D---------------QGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFD 142 (494)
T ss_pred echhhhcccCccc-c---------------ccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccc
Confidence 9999999874443 0 12344567788888888886 345 888899999999999999999999
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 168 MHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 168 ~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
..+.+..|+...+.+++.................++. ..+++.+++..++
T Consensus 143 ~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 143 REIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999888877775554333334444444 3558888887776
No 155
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.36 E-value=5e-13 Score=100.36 Aligned_cols=106 Identities=27% Similarity=0.284 Sum_probs=60.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHH--HHH-------cc---cCCeeeeecchhhHHHhHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHI--LIA-------TE---NKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~--~~~-------~~---~~~vl~iDeid~l~~~~~~ 100 (266)
.+||+|+||+|||++++++|+.++..|.++.+..-.-..++... +.. .. -..|+++|||+...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 37999999999999999999999999999987532222222111 000 01 13799999999654
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhhhhhhc-------cccCCCCceEEEEecCCCC-----CCcccccCCCcce
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG-------LWSSCGDERIIIFTTNHKE-----RLDPALLRPGRMD 167 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~~~~~~ivi~ttn~~~-----~ld~al~r~~Rf~ 167 (266)
..+++.+|+.|.. .....+.+.+||||.|+.+ .|+.+++. ||-
T Consensus 76 ----------------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 76 ----------------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ----------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ----------------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 3456677777752 2223345688999999875 68889998 883
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=8e-11 Score=105.17 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=99.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc----------------------------------EEEEeCC--cc------
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD----------------------------------VYDLELS--NL------ 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~----------------------------------~~~i~~~--~~------ 67 (266)
.++.+||+||+|+||+++|.++|+.+.+. ++.+... .-
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~ 119 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRT 119 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccc
Confidence 46789999999999999999999988431 1112110 00
Q ss_pred -cChhhHHHHHHHc------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC
Q 024550 68 -LGNNDLRHILIAT------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC 140 (266)
Q Consensus 68 -~~~~~l~~~~~~~------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 140 (266)
..-..++.+.... ..+.|++|||+|.+. ....+.|+..++.-
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~---------------------------~~aanaLLK~LEep---- 168 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN---------------------------ANAANALLKVLEEP---- 168 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC---------------------------HHHHHHHHHHHhcC----
Confidence 0112233333222 235799999999763 33556677777743
Q ss_pred CCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 141 GDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 141 ~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
+...+||.+|+.++.+.+.+.+ || ..|.|+.|+.++...++....... ....+..++...+.+|.....++
T Consensus 169 p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 3457888899999889999988 88 569999999999999888765321 12222445555566666655554
No 157
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=6.2e-12 Score=110.67 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=85.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-------CCc--EEEEeCC----------------------------cccChhhHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-------KFD--VYDLELS----------------------------NLLGNNDLR 74 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-------~~~--~~~i~~~----------------------------~~~~~~~l~ 74 (266)
.++||+||||||||+++++++..+ +.+ +..+.+. .+.+.-.+.
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 579999999999999999999988 331 1111100 011111111
Q ss_pred HHHHH-----------cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc-------
Q 024550 75 HILIA-----------TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL------- 136 (266)
Q Consensus 75 ~~~~~-----------~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------- 136 (266)
..+.. ...+++||+||++.+.. .+++.|++.|+.-
T Consensus 110 ~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~---------------------------~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 110 RALTRGEKAFEPGLLARANRGYLYIDEVNLLED---------------------------HIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred hhhhcCCeeecCCceEEcCCCeEEecChHhCCH---------------------------HHHHHHHHHHHcCCeEEEEC
Confidence 11111 12457999999998742 3455566666432
Q ss_pred --ccCCCCceEEEEecCCCC-CCcccccCCCcceeEEEcCCCCH-HHHHHHHHHhhC
Q 024550 137 --WSSCGDERIIIFTTNHKE-RLDPALLRPGRMDMHINMSHCTP-SGFKMLASNYLG 189 (266)
Q Consensus 137 --~~~~~~~~ivi~ttn~~~-~ld~al~r~~Rf~~~i~~~~p~~-~~~~~i~~~~~~ 189 (266)
....+.++++++|+|..+ .++++++. ||.+.|.++.|.. +++.+++.+...
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 112234678888888754 68999999 9999999999988 888999987543
No 158
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.34 E-value=2.9e-12 Score=102.66 Aligned_cols=109 Identities=22% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC----cEEEEeCCcccC----hhhHHHHHHHc------ccCCeeeeecchhhH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF----DVYDLELSNLLG----NNDLRHILIAT------ENKSILVVEDIDCCI 95 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~----~~~~i~~~~~~~----~~~l~~~~~~~------~~~~vl~iDeid~l~ 95 (266)
|...+||+||+|||||.+++++|..+.. +++.++++.+.. ...+..++... .+.+||||||||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3456999999999999999999999996 999999999987 44444444433 245799999999886
Q ss_pred HHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCCC
Q 024550 96 ELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHKE 154 (266)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~~ 154 (266)
+..+ ...+.....+++.||+.|++-.-.. -.+.+||+|+|--.
T Consensus 82 ~~~~----------------~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS----------------GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT----------------TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc----------------ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5210 0112233457777888886432211 14578999999643
No 159
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=5e-11 Score=111.13 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc----------ccCCeeeeecchhhHHH
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT----------ENKSILVVEDIDCCIEL 97 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~----------~~~~vl~iDeid~l~~~ 97 (266)
.|+.+.+||+||||-||||||+.+|+..|..++++++++-.+...+...+..+ .+|..|++||||.-.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-- 400 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-- 400 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc--
Confidence 44456699999999999999999999999999999999887766665554432 468899999999543
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhh--ccccCCC---------------CceEEEEecCCCCCCcccc
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID--GLWSSCG---------------DERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~~~---------------~~~ivi~ttn~~~~ld~al 160 (266)
...++.++..+. +....+. -..-||+.||..- -|+|
T Consensus 401 -------------------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaL 453 (877)
T KOG1969|consen 401 -------------------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APAL 453 (877)
T ss_pred -------------------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhh
Confidence 112222222221 0000000 0145899999643 3566
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhh
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIA 204 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~ 204 (266)
..---|..+|.|..|......+-++.+-..++... ...+..++.
T Consensus 454 R~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~e 498 (877)
T KOG1969|consen 454 RPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCE 498 (877)
T ss_pred hhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 42116788999999998876655555544444333 234444544
No 160
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.32 E-value=3.6e-11 Score=106.17 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=57.8
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc---------cccCCCCceEEEEecCC
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG---------LWSSCGDERIIIFTTNH 152 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~ivi~ttn~ 152 (266)
.+++||+||++.+.. .+++.|++.|+. .....+.++++|+|.|.
T Consensus 144 ~~GiL~lDEInrL~~---------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 144 NRGILYVDEVNLLDD---------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred CCCEEEecChHhCCH---------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc
Confidence 468999999998853 234445555542 11122346778888886
Q ss_pred CC-CCcccccCCCcceeEEEcCCCC-HHHHHHHHHHhhC
Q 024550 153 KE-RLDPALLRPGRMDMHINMSHCT-PSGFKMLASNYLG 189 (266)
Q Consensus 153 ~~-~ld~al~r~~Rf~~~i~~~~p~-~~~~~~i~~~~~~ 189 (266)
.+ .++++|+. ||.++|.+..|+ .+.+.+|+++...
T Consensus 197 ~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 197 EEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred ccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 65 68999999 999999999998 5899999987643
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-11 Score=117.38 Aligned_cols=197 Identities=19% Similarity=0.192 Sum_probs=120.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccChh--------hHHHHHHHcc--cCCeeeeec
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGNN--------DLRHILIATE--NKSILVVED 90 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~~--------~l~~~~~~~~--~~~vl~iDe 90 (266)
..+.+|+|+||+|||.++..+|... +..++.++...+.... .+..++.... .+.||||||
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDE 270 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDE 270 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEec
Confidence 5678999999999999999999876 6778888888877543 3444444432 389999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC------CCCcccccCCC
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK------ERLDPALLRPG 164 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~------~~ld~al~r~~ 164 (266)
+|.+.+.....+ ..-..-|-|.-.|. + ...-+|++|+.- +. |+||-|
T Consensus 271 iHtiVGAG~~~G------------------~a~DAaNiLKPaLA----R--GeL~~IGATT~~EYRk~iEK-D~AL~R-- 323 (786)
T COG0542 271 IHTIVGAGATEG------------------GAMDAANLLKPALA----R--GELRCIGATTLDEYRKYIEK-DAALER-- 323 (786)
T ss_pred hhhhcCCCcccc------------------cccchhhhhHHHHh----c--CCeEEEEeccHHHHHHHhhh-chHHHh--
Confidence 999976222111 00111222222222 2 346677777532 23 899999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhCCC----CCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhh
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLGIA----EHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLESKKRA 240 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (266)
|| ..|.+..|+.++-..|++..-... +..+.++.-..+. .+|...|.+. --|+++++-+.++..+.+-.
T Consensus 324 RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv--~LS~RYI~dR----~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 324 RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAV--TLSDRYIPDR----FLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHH--HHHHhhcccC----CCCchHHHHHHHHHHHHHhc
Confidence 99 569999999999988887555443 2333333322222 1444444322 34777777777777776665
Q ss_pred c-cchhhHHHHHHHHHhhhhhh
Q 024550 241 N-DGSEAKEAEERAVQAEKKVL 261 (266)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~ 261 (266)
. .+..-++.+++..+.+.+..
T Consensus 397 ~~~p~~l~~~~~~~~~l~~e~~ 418 (786)
T COG0542 397 IDKPEELDELERELAQLEIEKE 418 (786)
T ss_pred ccCCcchhHHHHHHHHHHHHHH
Confidence 3 24444444444444433333
No 162
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=2.4e-10 Score=100.96 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=87.8
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcE-------------------------EEEeCCc-----------------
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-------------------------YDLELSN----------------- 66 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~-------------------------~~i~~~~----------------- 66 (266)
..++++||+||+|+||+++|+++|..+.+.. +.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5577899999999999999999999885422 1221110
Q ss_pred ------------ccChhhHHHHHHHcc------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhh
Q 024550 67 ------------LLGNNDLRHILIATE------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSG 128 (266)
Q Consensus 67 ------------~~~~~~l~~~~~~~~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (266)
...-..++.+..... ..-|++||++|.|. ....|.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------------------~~AaNa 151 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN---------------------------VAAANA 151 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC---------------------------HHHHHH
Confidence 011123333332221 23477777777653 335567
Q ss_pred hhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHh
Q 024550 129 LLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 129 ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~ 187 (266)
||+.|+ .++.+++||.+|++++.|.|++++ || ..|.|+.|+.++....+...
T Consensus 152 LLKtLE----EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 152 LLKTLE----EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHhc----CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 777777 456779999999999999999999 98 67999999999988877654
No 163
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.28 E-value=2.2e-11 Score=108.78 Aligned_cols=156 Identities=14% Similarity=0.202 Sum_probs=102.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
.-++||||.|+|||+|++|++++. +..+++++...+... ......-... .-.+++|||++.+.+
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g--- 189 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG--- 189 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC---
Confidence 349999999999999999999988 334566665544311 1111121223 567999999998864
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC---cccccCCCcce--eEEEcCC
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL---DPALLRPGRMD--MHINMSH 174 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l---d~al~r~~Rf~--~~i~~~~ 174 (266)
....+..+..++|.+-.. .+.+++.+...|..+ .+.|.+ ||. ..+.+..
T Consensus 190 -------------------k~~~qeefFh~FN~l~~~-----~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~ 243 (408)
T COG0593 190 -------------------KERTQEEFFHTFNALLEN-----GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEP 243 (408)
T ss_pred -------------------ChhHHHHHHHHHHHHHhc-----CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCC
Confidence 112233334444444432 335666666677554 588888 665 7899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 175 CTPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
|+.+.|..|+.......+..+.+++..++. ...-+.+++..++
T Consensus 244 Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 244 PDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 999999999999888888887776655444 3344455544444
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.28 E-value=6.6e-11 Score=106.86 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc-----EEEEeCC------ccc-----C-------hhhHHHHHHHc----cc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD-----VYDLELS------NLL-----G-------NNDLRHILIAT----EN 82 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~-----~~~i~~~------~~~-----~-------~~~l~~~~~~~----~~ 82 (266)
..++++|+||||||||++|+.+|..+... +..+.++ ++. . ...+..++..+ ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 35689999999999999999999988431 1112221 111 0 01122233333 35
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchh-hhhhhhhh--hhccccCCCCceEEEEecCCCC----C
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHI-TLSGLLNF--IDGLWSSCGDERIIIFTTNHKE----R 155 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~--l~~~~~~~~~~~ivi~ttn~~~----~ 155 (266)
+.||+||||+.....+--...-. ....+..... .+.-.... .+.+ ..+.++.||||+|..+ .
T Consensus 273 ~~vliIDEINRani~kiFGel~~---------lLE~~~rg~~~~v~l~y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 273 KYVFIIDEINRANLSKVFGEVMM---------LMEHDKRGENWSVPLTYSENDEERF--YVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred CcEEEEehhhccCHHHhhhhhhh---------hccccccccccceeeeccccccccc--cCCCCeEEEEecCccccchhh
Confidence 79999999996543110000000 0000000000 00000000 0112 2246799999999886 7
Q ss_pred CcccccCCCcceeEEEcCC-CCHH
Q 024550 156 LDPALLRPGRMDMHINMSH-CTPS 178 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~-p~~~ 178 (266)
+|.||+| ||.+ |++.. ++.+
T Consensus 342 lD~AlrR--RF~f-i~i~p~~~~~ 362 (459)
T PRK11331 342 VDYALRR--RFSF-IDIEPGFDTP 362 (459)
T ss_pred ccHHHHh--hhhe-EEecCCCChH
Confidence 8999999 9955 66654 4444
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=4.5e-10 Score=99.36 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=88.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCcc-cChhhHHHHHHHcc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSNL-LGNNDLRHILIATE--- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~~-~~~~~l~~~~~~~~--- 81 (266)
.++.+|||||+|+||+++|+++|+.+.++ +..+....- .+...++.+.....
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC
Confidence 46789999999999999999999987432 333322211 12234444443322
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
..-|++|||+|.+. ....+.||..|+. ++...++|.+|+.+..+.+
T Consensus 107 ~~~~~kvviI~~a~~~~---------------------------~~a~NaLLK~LEE----Pp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 107 VESNKKVYIIEHADKMT---------------------------ASAANSLLKFLEE----PSGGTTAILLTENKHQILP 155 (329)
T ss_pred cccCceEEEeehHhhhC---------------------------HHHHHHHHHHhcC----CCCCceEEEEeCChHhCcH
Confidence 35799999999773 2245667777774 3456888889989999999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASN 186 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~ 186 (266)
++.+ || ..++|+.|+.++....+..
T Consensus 156 TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 156 TILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9999 88 6699999999998777754
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.9e-10 Score=101.30 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=87.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC------------------------CcEEEEeCCcccCh----hhHHHHHHHc--
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK------------------------FDVYDLELSNLLGN----NDLRHILIAT-- 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~------------------------~~~~~i~~~~~~~~----~~l~~~~~~~-- 80 (266)
++.+||+||||||||++|.++|+.+. ..++++++++.... ..++.+....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 44799999999999999999999986 57788888776552 2334333332
Q ss_pred ----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 81 ----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 81 ----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
...-|++|||+|.+.. ...+.++..++. .+....||.+||.+..+
T Consensus 104 ~~~~~~~kviiidead~mt~---------------------------~A~nallk~lEe----p~~~~~~il~~n~~~~i 152 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------------------DAANALLKTLEE----PPKNTRFILITNDPSKI 152 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------------------HHHHHHHHHhcc----CCCCeEEEEEcCChhhc
Confidence 2357999999998853 234455555553 35678999999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLA 184 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~ 184 (266)
-+.+.+ || ..+.|+.|+........
T Consensus 153 l~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 153 LPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred cchhhh--cc-eeeecCCchHHHHHHHh
Confidence 999999 88 56888876665544333
No 167
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=3.2e-10 Score=100.18 Aligned_cols=151 Identities=16% Similarity=0.174 Sum_probs=102.4
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCc---ccChhhHHHHHHHcc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSN---LLGNNDLRHILIATE 81 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~---~~~~~~l~~~~~~~~ 81 (266)
..++++||+||+|+||+++|.++|..+.+ .++.+.+.. ..+-..++++.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34678999999999999999999998833 233333221 123344554444332
Q ss_pred ------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 82 ------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 82 ------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..-|++||++|.|- ....|.||+.|+ .++.+.+||.+|+.++.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLE----EPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT---------------------------DAAANALLKTLE----EPPENTWFFLACREPAR 150 (334)
T ss_pred hccccCCceEEEEcchHhhC---------------------------HHHHHHHHHHhc----CCCCCeEEEEEECChhh
Confidence 35699999999874 234566777776 45678999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
|.|++++ ||. .+.|+.|+.++....+....+. ...++..++.-.+.+|....+.+
T Consensus 151 lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~~~~----~~~~a~~~~~la~G~~~~Al~l~ 205 (334)
T PRK07993 151 LLATLRS--RCR-LHYLAPPPEQYALTWLSREVTM----SQDALLAALRLSAGAPGAALALL 205 (334)
T ss_pred ChHHHHh--ccc-cccCCCCCHHHHHHHHHHccCC----CHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999 985 5899999999988777543221 12334444455556665544443
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=6e-10 Score=97.75 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCC--cccChhhHHHHHHHcc--
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELS--NLLGNNDLRHILIATE-- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~--~~~~~~~l~~~~~~~~-- 81 (266)
.++++||+||+|+||+++|+++|..+.+ .++.+.+. ...+-..++++.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 4678999999999999999999998843 13333221 1113344554443321
Q ss_pred ----cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc
Q 024550 82 ----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD 157 (266)
Q Consensus 82 ----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld 157 (266)
..-|++||++|.|- ....|.||+.|+. ++..++||.+|+.++.+.
T Consensus 103 ~~~g~~KV~iI~~a~~m~---------------------------~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT---------------------------EAAANALLKTLEE----PRPNTYFLLQADLSAALL 151 (325)
T ss_pred cccCCceEEEEechhhhC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChHhCc
Confidence 34689999999874 2345667777764 456789999999999999
Q ss_pred ccccCCCcceeEEEcCCCCHHHHHHHHHHhh
Q 024550 158 PALLRPGRMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 158 ~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
|++++ || ..+.|+.|+.++....+....
T Consensus 152 pTI~S--RC-~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 152 PTIYS--RC-QTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred hHHHh--hc-eEEeCCCCCHHHHHHHHHHHh
Confidence 99999 98 569999999999887776543
No 169
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=3.6e-11 Score=106.05 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=84.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-------CCcEE-------------EE------------------eCC------c
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-------KFDVY-------------DL------------------ELS------N 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-------~~~~~-------------~i------------------~~~------~ 66 (266)
..+++|.|+||+|||+++++++..+ +.++- .. +.. .
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~ 104 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDR 104 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccc
Confidence 3469999999999999999999877 22221 00 000 1
Q ss_pred ccChhhHHHHHH-----------HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc
Q 024550 67 LLGNNDLRHILI-----------ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG 135 (266)
Q Consensus 67 ~~~~~~l~~~~~-----------~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 135 (266)
+.+.-.+...+. ....+++||+||++.+.. .+++.|++.|+.
T Consensus 105 l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---------------------------~~Q~~Ll~~l~~ 157 (337)
T TIGR02030 105 VCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---------------------------HLVDVLLDVAAS 157 (337)
T ss_pred eecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---------------------------HHHHHHHHHHHh
Confidence 111112222221 123468999999998743 244455555532
Q ss_pred c---------ccCCCCceEEEEecCCCC-CCcccccCCCcceeEEEcCCCCH-HHHHHHHHHhh
Q 024550 136 L---------WSSCGDERIIIFTTNHKE-RLDPALLRPGRMDMHINMSHCTP-SGFKMLASNYL 188 (266)
Q Consensus 136 ~---------~~~~~~~~ivi~ttn~~~-~ld~al~r~~Rf~~~i~~~~p~~-~~~~~i~~~~~ 188 (266)
- ....+.++++|+|+|..+ .++++|+. ||.+.+.++.|.. +++.+|+++..
T Consensus 158 g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 158 GWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 1 112234578888888654 68999999 9999999999987 88889988754
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.7e-10 Score=99.95 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=102.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc------------------EEEEeCCccc-----------------------C
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD------------------VYDLELSNLL-----------------------G 69 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~------------------~~~i~~~~~~-----------------------~ 69 (266)
++.+||+||+|+||+++|.++|..+.+. ++.+.+.... .
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 5689999999999999999999987432 1222221100 0
Q ss_pred hhhHHHHHHHc------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCc
Q 024550 70 NNDLRHILIAT------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDE 143 (266)
Q Consensus 70 ~~~l~~~~~~~------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 143 (266)
-..++++.... ....|++||++|.+. ....+.||+.|+.- + .
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~---------------------------~~aaNaLLK~LEEP----p-~ 153 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMN---------------------------EAAANALLKTLEEP----G-N 153 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcC---------------------------HHHHHHHHHHHhCC----C-C
Confidence 11233333222 135799999998773 23456778887752 3 4
Q ss_pred eEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 144 RIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 144 ~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+||.+|+.++.|.+++.+ || ..+.|+.|+.++..+++......... ..+...++...+.+|+...+.+
T Consensus 154 ~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHHcCCCHHHHHHHH
Confidence 5778888899999999999 98 67999999999999988876533221 1223556666778888877765
No 171
>PRK04132 replication factor C small subunit; Provisional
Probab=99.24 E-value=1.1e-10 Score=113.26 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=112.6
Q ss_pred eEEec--CCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChhhHHHHHHHcc--------cCCeeeeecchhhHHHh
Q 024550 34 YLLYG--PPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNNDLRHILIATE--------NKSILVVEDIDCCIELQ 98 (266)
Q Consensus 34 iLl~G--ppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~~l~~~~~~~~--------~~~vl~iDeid~l~~~~ 98 (266)
-+..| |++.||||+|+++|+++ +.+++++++++..+...++..+.... +..|++|||+|.|..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 45678 99999999999999998 55799999998766666766654321 125999999998842
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHH
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPS 178 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~ 178 (266)
...+.|+..|+.. +..+.||++||++..+.+++.+ || ..+.|+.|+.+
T Consensus 645 -------------------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 645 -------------------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred -------------------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 2455677777743 3568899999999999999999 98 66999999999
Q ss_pred HHHHHHHHhhCCCCCCc-HHHHHHHhhcCCCCHHHHHHHH
Q 024550 179 GFKMLASNYLGIAEHPL-FVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 179 ~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~i~~~l 217 (266)
+....+......++... .+.+..++.....+++...+.+
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99888887776665543 3445555555556666555555
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=1.7e-10 Score=91.77 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=78.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC-----------------------CcEEEEeCCcc---cChhhHHHHHHHcc--
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK-----------------------FDVYDLELSNL---LGNNDLRHILIATE-- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~-----------------------~~~~~i~~~~~---~~~~~l~~~~~~~~-- 81 (266)
.++.+||+||+|+||+++|+++|..+. ..++.+..... .....++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 367899999999999999999998772 23455554433 23455665555442
Q ss_pred ----cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc
Q 024550 82 ----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD 157 (266)
Q Consensus 82 ----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld 157 (266)
..-|++||++|.|- ....+.||..|+.- +..+++|.+|+.++.+.
T Consensus 98 ~~~~~~KviiI~~ad~l~---------------------------~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT---------------------------EEAQNALLKTLEEP----PENTYFILITNNPSKIL 146 (162)
T ss_dssp -TTSSSEEEEEETGGGS----------------------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-
T ss_pred HhcCCceEEEeehHhhhh---------------------------HHHHHHHHHHhcCC----CCCEEEEEEECChHHCh
Confidence 35699999999874 34567788888753 46799999999999999
Q ss_pred ccccCCCcceeEEEcCCC
Q 024550 158 PALLRPGRMDMHINMSHC 175 (266)
Q Consensus 158 ~al~r~~Rf~~~i~~~~p 175 (266)
+.+++ || ..|.|+..
T Consensus 147 ~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 147 PTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp HHHHT--TS-EEEEE---
T ss_pred HHHHh--hc-eEEecCCC
Confidence 99999 98 56777654
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=4.7e-11 Score=91.08 Aligned_cols=66 Identities=27% Similarity=0.466 Sum_probs=48.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc---EEEEeCCcccC--------------------hhhHHHHHHHcc--cCCe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD---VYDLELSNLLG--------------------NNDLRHILIATE--NKSI 85 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~---~~~i~~~~~~~--------------------~~~l~~~~~~~~--~~~v 85 (266)
+..++|+||||||||++++.+|..+... ++.+++..... .......+..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 77787765432 112233333333 2599
Q ss_pred eeeecchhhHH
Q 024550 86 LVVEDIDCCIE 96 (266)
Q Consensus 86 l~iDeid~l~~ 96 (266)
|++||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999998865
No 174
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=1.2e-10 Score=106.12 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=80.1
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCC--cEEEEeCC-----cccChhhHHH-----HHHHcc-----cCCeeeeec
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKF--DVYDLELS-----NLLGNNDLRH-----ILIATE-----NKSILVVED 90 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~--~~~~i~~~-----~~~~~~~l~~-----~~~~~~-----~~~vl~iDe 90 (266)
.-...++||+||||||||++|++++..++. +|....+. ++.+...+.. .|.... ...+||+||
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecc
Confidence 334567999999999999999999998753 33333222 2222111111 111111 234899999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC------CceEEEEecCCCC---CCccccc
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG------DERIIIFTTNHKE---RLDPALL 161 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~ivi~ttn~~~---~ld~al~ 161 (266)
|..+. ..+++.||..|..-.-+.+ ...++++|||... ...++++
T Consensus 116 I~ras---------------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~ 168 (498)
T PRK13531 116 IWKAG---------------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALY 168 (498)
T ss_pred cccCC---------------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhH
Confidence 98553 4466778888842221111 1245666667432 2335899
Q ss_pred CCCcceeEEEcCCCCH-HHHHHHHHHh
Q 024550 162 RPGRMDMHINMSHCTP-SGFKMLASNY 187 (266)
Q Consensus 162 r~~Rf~~~i~~~~p~~-~~~~~i~~~~ 187 (266)
. ||.+.|.+|+|+. ++...|+...
T Consensus 169 D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 169 D--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred h--hEEEEEECCCCCchHHHHHHHHcc
Confidence 9 9999999999974 5557777654
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1e-09 Score=96.16 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=99.6
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc---------------------EEEE--eCCcc-------cChhhHHHHHH
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD---------------------VYDL--ELSNL-------LGNNDLRHILI 78 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~---------------------~~~i--~~~~~-------~~~~~l~~~~~ 78 (266)
..++++||+||+|+||+++|.++|..+.+. ++.+ .+..- ..-..++++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 346789999999999999999999877321 2333 11110 11223343333
Q ss_pred Hcc------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC
Q 024550 79 ATE------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH 152 (266)
Q Consensus 79 ~~~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~ 152 (266)
... ..-|++||++|.|. ....|.||+.|+. ++.+.+||.+|+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLEE----Pp~~~~fiL~~~~ 152 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN---------------------------RAACNALLKTLEE----PSPGRYLWLISAQ 152 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC---------------------------HHHHHHHHHHhhC----CCCCCeEEEEECC
Confidence 221 24689999999773 3355677777764 4567889999999
Q ss_pred CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 153 KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 153 ~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
++.|.|.+++ || ..|.|+.|+.++....+... +. ...++..++.-.+.+|......+
T Consensus 153 ~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999 98 56999999998887777642 11 12334445555667776665544
No 176
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1e-09 Score=94.49 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=79.2
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC------CceEEEEecC----
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG------DERIIIFTTN---- 151 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~ivi~ttn---- 151 (266)
+.+|+||||||.++....... .+...+-++..+|-.++|..-... ..++||++.-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~---------------~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~s 314 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGG---------------PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVA 314 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCC---------------CCcchhhhcccccccccCceeeccccccccceEEEEecCceecC
Confidence 468999999999986332111 012334466667777776533221 2367777653
Q ss_pred CCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCC----CCHHHHHHHH---H--cCCC
Q 024550 152 HKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAK----VTPADVAEQL---M--RNEA 222 (266)
Q Consensus 152 ~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~s~~~i~~~l---~--~~~~ 222 (266)
.|.+|-|.|.- ||...+++...+.+....|+. .-...+..+...+....+ ||-..|.++. + +...
T Consensus 315 KPSDLiPELQG--RfPIRVEL~~Lt~~Df~rILt----ep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ 388 (444)
T COG1220 315 KPSDLIPELQG--RFPIRVELDALTKEDFERILT----EPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKT 388 (444)
T ss_pred ChhhcChhhcC--CCceEEEcccCCHHHHHHHHc----CcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccc
Confidence 56777788887 999999999999999776653 222333344444444333 5544443332 1 1223
Q ss_pred HHHHHHHHHHHHHhhh
Q 024550 223 PEFALSGLIEFLESKK 238 (266)
Q Consensus 223 ~~~~~~~~~~~~~~~~ 238 (266)
....++++-..+++..
T Consensus 389 ENIGARRLhTvlErlL 404 (444)
T COG1220 389 ENIGARRLHTVLERLL 404 (444)
T ss_pred cchhHHHHHHHHHHHH
Confidence 3345555555555443
No 177
>PRK08116 hypothetical protein; Validated
Probab=99.20 E-value=5.6e-11 Score=102.08 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=73.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh----------hhHHHHHHHcccCCeeeeecchhhHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN----------NDLRHILIATENKSILVVEDIDCCIEL 97 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~----------~~l~~~~~~~~~~~vl~iDeid~l~~~ 97 (266)
+.+++||||||||||+|+.++++.+ +.+++.++...+... .....++.......+|+|||++....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~- 192 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD- 192 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-
Confidence 4579999999999999999999986 678888876654321 11224445556678999999964211
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-CC----CcccccCCCcc---eeE
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-ER----LDPALLRPGRM---DMH 169 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-~~----ld~al~r~~Rf---~~~ 169 (266)
..+ ....+.+.++.... .+..+|.|||.+ +. ++.++.+ |+ ...
T Consensus 193 ---------------------t~~---~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~ 243 (268)
T PRK08116 193 ---------------------TEW---AREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTP 243 (268)
T ss_pred ---------------------CHH---HHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEE
Confidence 011 22334444443322 234577777754 33 4667777 63 345
Q ss_pred EEcCCCCH
Q 024550 170 INMSHCTP 177 (266)
Q Consensus 170 i~~~~p~~ 177 (266)
|.|+.|+.
T Consensus 244 v~~~g~d~ 251 (268)
T PRK08116 244 VENEGKSY 251 (268)
T ss_pred EEeeCcCh
Confidence 77777765
No 178
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-10 Score=97.02 Aligned_cols=94 Identities=24% Similarity=0.334 Sum_probs=66.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------hhHHHHHHHc------ccCCeeeeecchhhHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN--------NDLRHILIAT------ENKSILVVEDIDCCIEL 97 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~--------~~l~~~~~~~------~~~~vl~iDeid~l~~~ 97 (266)
+++||.||.|||||.||+.+|+.+++||-..++..++.. .-+..++..+ .+.+|++|||||.+...
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 469999999999999999999999999999999888631 2234444443 36899999999999753
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS 138 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 138 (266)
...-+.. .+...+-.+..||..++|...
T Consensus 178 SeN~SIT-------------RDVSGEGVQQALLKiiEGTva 205 (408)
T COG1219 178 SENPSIT-------------RDVSGEGVQQALLKIIEGTVA 205 (408)
T ss_pred CCCCCcc-------------cccCchHHHHHHHHHHcCcee
Confidence 2221111 123345566677777775443
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.4e-09 Score=95.17 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=99.8
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCC-----------------------cEEEEeCCc---ccChhhHHHHHHHcc-
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKF-----------------------DVYDLELSN---LLGNNDLRHILIATE- 81 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~-----------------------~~~~i~~~~---~~~~~~l~~~~~~~~- 81 (266)
..++++||+||.|+||+++|+++|..+.+ .++.+.+.. ..+-..++.+.....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 34678999999999999999999987732 344444321 122334444332221
Q ss_pred -----cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 82 -----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 82 -----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
..-|++||++|.|- ....|.||+.++. ++.+++||.+|+.++.+
T Consensus 103 ~~~~~~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN---------------------------ESASNALLKTLEE----PAPNCLFLLVTHNQKRL 151 (319)
T ss_pred CcccCCceEEEecchhhhC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhC
Confidence 24699999999773 3355667777764 45679999999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.|++++ || ..+.|+.|+.++....+... +.. .....+.-.+.+|....+.+
T Consensus 152 LpTI~S--RC-q~~~~~~~~~~~~~~~L~~~----~~~---~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 152 LPTIVS--RC-QQWVVTPPSTAQAMQWLKGQ----GIT---VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hHHHHh--cc-eeEeCCCCCHHHHHHHHHHc----CCc---hHHHHHHHcCCCHHHHHHHh
Confidence 999999 98 56999999999988777642 111 11233344446666555544
No 180
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.18 E-value=4e-10 Score=99.59 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=94.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHH-HH-----------------HHcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRH-IL-----------------IATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~-~~-----------------~~~~~~~vl~iD 89 (266)
...|||+|++||||+++|+++.... +.+|+.++|..+.. ..+.. +| .....+++||||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence 4569999999999999999998766 47999999998743 23322 22 122357999999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-------cCCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-------SSCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~ivi~ttn~~-------~~ 155 (266)
||+.|.. ..+..|+..++... ......+.+|++||.. ..
T Consensus 101 ei~~L~~---------------------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~ 153 (329)
T TIGR02974 101 ELATASL---------------------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGR 153 (329)
T ss_pred ChHhCCH---------------------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCc
Confidence 9998853 23344555554221 0112346778888743 34
Q ss_pred CcccccCCCcce-eEEEcCCCC--HHHHHHHHHHhhCCC----C----CCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMD-MHINMSHCT--PSGFKMLASNYLGIA----E----HPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~--~~~~~~i~~~~~~~~----~----~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. ||. ..|.+|... .++...|+.+|+... + ..+..+.-..+..+. .+..++.+++
T Consensus 154 fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i 226 (329)
T TIGR02974 154 FRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVV 226 (329)
T ss_pred hHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHH
Confidence 5566777 774 345555444 244456666655321 1 234445444444444 5566666655
No 181
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.6e-10 Score=102.20 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=53.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------hhHHHHHHHc------ccCCeeeeecchhhHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN--------NDLRHILIAT------ENKSILVVEDIDCCIE 96 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~--------~~l~~~~~~~------~~~~vl~iDeid~l~~ 96 (266)
.+|||.||.|+|||.|++.||+.+++||..++|..++.. .-+..++..+ .+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 469999999999999999999999999999999998732 2244444443 3689999999999964
No 182
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.14 E-value=9.7e-10 Score=93.02 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC----------
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH---------- 152 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~---------- 152 (266)
|+||||||++.|. -..+..|...++.-. ..++|++||+
T Consensus 297 PGVLFIDEVhMLD---------------------------iEcFTyL~kalES~i-----aPivifAsNrG~~~irGt~d 344 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD---------------------------IECFTYLHKALESPI-----APIVIFASNRGMCTIRGTED 344 (456)
T ss_pred CcceEeeehhhhh---------------------------hHHHHHHHHHhcCCC-----CceEEEecCCcceeecCCcC
Confidence 6899999999773 123333445555432 2456666664
Q ss_pred ---CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc
Q 024550 153 ---KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT 205 (266)
Q Consensus 153 ---~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 205 (266)
|..+++.|+. |+ +.|..-.++.++.++|+++....++.+..++.-.++..
T Consensus 345 ~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 345 ILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE 397 (456)
T ss_pred CCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh
Confidence 5678899999 98 66888888888899999999888888877665544443
No 183
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.13 E-value=1.2e-10 Score=108.63 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=83.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE----eCCcccChh---------hHHHHHHHcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL----ELSNLLGNN---------DLRHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i----~~~~~~~~~---------~l~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
++||+|+||||||++++++++.+....+.. ++..+.... .+.........+++++|||++.+..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~--- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD--- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH---
Confidence 599999999999999999999876543332 222221100 0000011123578999999998743
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhcc---------ccCCCCceEEEEecCCCC-------------CCc
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL---------WSSCGDERIIIFTTNHKE-------------RLD 157 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~~ivi~ttn~~~-------------~ld 157 (266)
.....|+..|+.- ....+.+..+|+|+|+.. .|+
T Consensus 315 ------------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 315 ------------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred ------------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 2233444444321 111224578999999752 589
Q ss_pred ccccCCCcceeE-EEcCCCCHHHHHHHHHHhhC
Q 024550 158 PALLRPGRMDMH-INMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 158 ~al~r~~Rf~~~-i~~~~p~~~~~~~i~~~~~~ 189 (266)
+++++ ||++. +....|+.+...+|..+.+.
T Consensus 371 ~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 371 APILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred hHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999 99875 55588999998898887653
No 184
>PRK08181 transposase; Validated
Probab=99.12 E-value=1.9e-10 Score=98.47 Aligned_cols=65 Identities=28% Similarity=0.472 Sum_probs=49.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhhH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
..+++|+||||||||+|+.+++..+ |..++.++...+.. ...+...+.......+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 4679999999999999999999765 66777777655442 12344556666778999999998764
No 185
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.11 E-value=4.8e-10 Score=107.19 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=86.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-----------------------------------CCcEEEEeCCcc----cChhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-----------------------------------KFDVYDLELSNL----LGNND 72 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-----------------------------------~~~~~~i~~~~~----~~~~~ 72 (266)
.++||+||||||||+++++++..+ ..+|+.+++... .+.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 469999999999999999999987 246666655432 12222
Q ss_pred HHHHHHH-----------cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc-----
Q 024550 73 LRHILIA-----------TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL----- 136 (266)
Q Consensus 73 l~~~~~~-----------~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----- 136 (266)
+...+.. ...++||||||++.+.. .+++.|++.|+.-
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~---------------------------~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD---------------------------HLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH---------------------------HHHHHHHHHHhcCCEEEE
Confidence 3322211 12468999999998743 3455566666421
Q ss_pred ----ccCCCCceEEEEecCCC-CCCcccccCCCcceeEEEcCCCC-HHHHHHHHHHhh
Q 024550 137 ----WSSCGDERIIIFTTNHK-ERLDPALLRPGRMDMHINMSHCT-PSGFKMLASNYL 188 (266)
Q Consensus 137 ----~~~~~~~~ivi~ttn~~-~~ld~al~r~~Rf~~~i~~~~p~-~~~~~~i~~~~~ 188 (266)
......++++|+|+|.. ..+.++|+. ||++.|.++.+. .+++.+++.+.+
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 11112457889999864 468899999 999999998876 466777776544
No 186
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.11 E-value=2.5e-10 Score=108.06 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=87.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCC--cEEEEeCCcc----cChhhHHHHHH-----------HcccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKF--DVYDLELSNL----LGNNDLRHILI-----------ATENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~--~~~~i~~~~~----~~~~~l~~~~~-----------~~~~~~vl~iDeid~l 94 (266)
.++||.|+||||||+++++++..+.. +|+.+++... .+.-.+...+. ....+++||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 36999999999999999999998754 5887775321 11111111111 1234689999999987
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc---------ccCCCCceEEEEecCCCC---CCcccccC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL---------WSSCGDERIIIFTTNHKE---RLDPALLR 162 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~~ivi~ttn~~~---~ld~al~r 162 (266)
.. .+++.|++.|+.- ....+..+.+|+|+|..+ .++++|+.
T Consensus 97 ~~---------------------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld 149 (589)
T TIGR02031 97 DD---------------------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD 149 (589)
T ss_pred CH---------------------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH
Confidence 53 3455566666422 111124578889999765 78999999
Q ss_pred CCcceeEEEcCC-CCHHHHHHHHHHhh
Q 024550 163 PGRMDMHINMSH-CTPSGFKMLASNYL 188 (266)
Q Consensus 163 ~~Rf~~~i~~~~-p~~~~~~~i~~~~~ 188 (266)
||.++|.+.. |+..+|.+|+++++
T Consensus 150 --Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 --RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred --hccCeeecCCCCCHHHHHHHHHHHH
Confidence 9999888865 46666889888876
No 187
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.10 E-value=4.7e-11 Score=97.34 Aligned_cols=25 Identities=44% Similarity=0.749 Sum_probs=20.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++|++||||||||++|+.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999866
No 188
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=1.4e-10 Score=99.78 Aligned_cols=134 Identities=25% Similarity=0.351 Sum_probs=82.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc---EEEEeCCcccChhhHHHHHHHc-------------ccCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD---VYDLELSNLLGNNDLRHILIAT-------------ENKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~---~~~i~~~~~~~~~~l~~~~~~~-------------~~~~vl~iDeid~l 94 (266)
.+.+||+||+|||||++++.+-..+... ...++++..++...++..+... .+..|+||||++..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5679999999999999999877666432 3456676665555555544331 13479999999965
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhh---ccccCCC------CceEEEEecCCCC---CCcccccC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID---GLWSSCG------DERIIIFTTNHKE---RLDPALLR 162 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---~~~~~~~------~~~ivi~ttn~~~---~ld~al~r 162 (266)
.. +........++|..+- ++++... ..+.+|+++|++. .++++|+|
T Consensus 113 ~~----------------------d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r 170 (272)
T PF12775_consen 113 QP----------------------DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR 170 (272)
T ss_dssp -------------------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT
T ss_pred CC----------------------CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh
Confidence 32 1111122234444332 4433221 2467889988653 47899999
Q ss_pred CCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 163 PGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
+| ..+.++.|+.++...|+..++.
T Consensus 171 --~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 --HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TE-EEEE----TCCHHHHHHHHHHH
T ss_pred --he-EEEEecCCChHHHHHHHHHHHh
Confidence 88 5699999999998888766664
No 189
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=2.9e-10 Score=90.91 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=48.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHHH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HILI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~~-----------------~~~~~~vl~iD 89 (266)
+..|||+|++||||+.+|+++.+.. +.||+.++|+.+.. ..+. .+|. ....+++||||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld 100 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLD 100 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-chhhhhhhccccccccccccccCCceeeccceEEeec
Confidence 4679999999999999999999976 47999999998843 3333 3332 12357999999
Q ss_pred cchhhHH
Q 024550 90 DIDCCIE 96 (266)
Q Consensus 90 eid~l~~ 96 (266)
||+.|..
T Consensus 101 ~I~~L~~ 107 (168)
T PF00158_consen 101 EIEDLPP 107 (168)
T ss_dssp TGGGS-H
T ss_pred chhhhHH
Confidence 9999863
No 190
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.09 E-value=1e-09 Score=96.97 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=93.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHH------------------HHcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHIL------------------IATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~------------------~~~~~~~vl~iD 89 (266)
+..|||+|++||||+++|+++.... +.+|+.++|..+.. ..+...+ .....+++||||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~ 107 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeC
Confidence 4569999999999999999998765 47999999998743 3333222 123357899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-cC------CCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-SS------CGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~------~~~~~ivi~ttn~~-------~~ 155 (266)
|++.|.. ..+..|++.++... .. ....+.+|+||+.. ..
T Consensus 108 ~i~~L~~---------------------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 108 ELATAPM---------------------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred ChhhCCH---------------------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 9998853 23344455554211 11 11246677777653 34
Q ss_pred CcccccCCCcce-eEEEcCCCCH--HHHHHHHHHhhCCC----C----CCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMD-MHINMSHCTP--SGFKMLASNYLGIA----E----HPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~~--~~~~~i~~~~~~~~----~----~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. ||. ..|.+|.... ++...|+.+|+... + ..+..+....+..+. .+-.++.+++
T Consensus 161 f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl 233 (326)
T PRK11608 161 FRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVV 233 (326)
T ss_pred chHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5567777 774 4555554443 33445666655321 1 123444444444444 4556666655
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.08 E-value=1.1e-10 Score=94.14 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=48.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc-------ChhhHHHHHHHcccCCeeeeecchhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL-------GNNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~-------~~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
.+.+++|+||||||||++|.++++++ |.++..++..++. ........+.......+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 35689999999999999999999876 7777888776654 12334455666677899999999854
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.07 E-value=1.3e-09 Score=102.69 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=94.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHH-H-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHIL-I-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~-~-----------------~~~~~~vl~iD 89 (266)
...|||+|++||||+++|++++... +.+|+.++|..+.. ..+...+ . ....+++||||
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ld 297 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD 297 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEe
Confidence 3469999999999999999999875 57999999998843 2332222 1 12347899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-cCC------CCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-SSC------GDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------~~~~ivi~ttn~~-------~~ 155 (266)
||+.+.. ..+..|+..++... ... ...+.+|+||+.. ..
T Consensus 298 ei~~L~~---------------------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~ 350 (534)
T TIGR01817 298 EIGEISP---------------------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGE 350 (534)
T ss_pred chhhCCH---------------------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCC
Confidence 9998853 23344555554321 110 1235677777643 23
Q ss_pred CcccccCCCcce-eEEEcCCCC--HHHHHHHHHHhhCCC----C--CCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMD-MHINMSHCT--PSGFKMLASNYLGIA----E--HPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~--~~~~~~i~~~~~~~~----~--~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. |+. ..|.+|... .++...|+.+|+... + ..+..+.-..+..+. .+..++.+++
T Consensus 351 f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~ 421 (534)
T TIGR01817 351 FRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCL 421 (534)
T ss_pred CCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHH
Confidence 4445555 554 456666555 355566666666432 1 233444444444443 5566666655
No 193
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.3e-09 Score=96.07 Aligned_cols=124 Identities=12% Similarity=0.211 Sum_probs=87.6
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCC-------------------------cEEEEeCCc----------ccChhhH
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------------------DVYDLELSN----------LLGNNDL 73 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~-------------------------~~~~i~~~~----------~~~~~~l 73 (266)
..++++||+||+|+|||++|+.+|+.+.+ .++.+.+.. ..+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45778999999999999999999998732 344555421 1123345
Q ss_pred HHHHHHcc------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEE
Q 024550 74 RHILIATE------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIII 147 (266)
Q Consensus 74 ~~~~~~~~------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi 147 (266)
+++..... ...|+++|+++.+. ....+.++..++... .+..+|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld---------------------------~~a~naLLk~LEep~----~~~~~I 147 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN---------------------------LQAANSLLKVLEEPP----PQVVFL 147 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC---------------------------HHHHHHHHHHHHhCc----CCCEEE
Confidence 55544332 34688899999774 234455667666541 346677
Q ss_pred EecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHH
Q 024550 148 FTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASN 186 (266)
Q Consensus 148 ~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~ 186 (266)
.+|+.++.+.+.+.+ || ..+.|+.|+.++....+..
T Consensus 148 lvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 148 LVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 799999999999999 88 6699999999987776653
No 194
>PRK12377 putative replication protein; Provisional
Probab=99.06 E-value=2.8e-10 Score=96.30 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=48.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC--------hhhHHHHHHHcccCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG--------NNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~--------~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
..+++|+||||||||+|+.++++.+ |.+++.++..++.. .......+.......+|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 3579999999999999999999988 56677777665542 1123345666678899999999754
No 195
>PRK06526 transposase; Provisional
Probab=99.05 E-value=1.4e-10 Score=98.69 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=46.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhhH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
+.+++|+||||||||+++.+++.++ |..++.+++..+.. ...+...+.......+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4579999999999999999998876 55555554443321 11233445555667899999999763
No 196
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.04 E-value=3.1e-09 Score=89.13 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=82.4
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc-cCCeeeeecchhhHHHhHHHhhhhh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATE-NKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
+....+..++||+|||||.+++.+|..+|.+++.++|+...+...+.+++.... .++.+++||++.+-...= +.-
T Consensus 29 l~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vL--S~i-- 104 (231)
T PF12774_consen 29 LSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVL--SVI-- 104 (231)
T ss_dssp HCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHH--HHH--
T ss_pred hccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHH--HHH--
Confidence 344567789999999999999999999999999999999999999999997765 599999999998843110 000
Q ss_pred cCCccccccccccccchhhhhhhhhhhhcc---------ccCCCCceEEEEecCC----CCCCcccccCCCcceeEEEcC
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGL---------WSSCGDERIIIFTTNH----KERLDPALLRPGRMDMHINMS 173 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~~ivi~ttn~----~~~ld~al~r~~Rf~~~i~~~ 173 (266)
...+..+.+.+..- .-......-++.|.|+ ...||+.|.. -| +.+.+.
T Consensus 105 ----------------~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 105 ----------------SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp ----------------HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred ----------------HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 00011111111100 0000112224445563 3578888886 55 679999
Q ss_pred CCCHHHHHHHHHHhhCC
Q 024550 174 HCTPSGFKMLASNYLGI 190 (266)
Q Consensus 174 ~p~~~~~~~i~~~~~~~ 190 (266)
.||.....+++-...+.
T Consensus 166 ~PD~~~I~ei~L~s~GF 182 (231)
T PF12774_consen 166 VPDLSLIAEILLLSQGF 182 (231)
T ss_dssp S--HHHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHHcCc
Confidence 99988877765544443
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=6.6e-09 Score=91.66 Aligned_cols=69 Identities=20% Similarity=0.145 Sum_probs=47.4
Q ss_pred ccchhhhhhhhhhhhccccCC-------CCceEEEEecCCC-------CCCcccccCCCcceeEEEcCCCCH-HHHHHHH
Q 024550 120 KQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHK-------ERLDPALLRPGRMDMHINMSHCTP-SGFKMLA 184 (266)
Q Consensus 120 ~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~-------~~ld~al~r~~Rf~~~i~~~~p~~-~~~~~i~ 184 (266)
......++.||+.++...-.. .-..+||++||.. .....+|++ ||. .|.+|.|.. .+-.+|.
T Consensus 247 K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy 323 (361)
T smart00763 247 KADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIY 323 (361)
T ss_pred cCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHH
Confidence 445567777887776322211 1235789999976 355899999 996 799998876 4556788
Q ss_pred HHhhCCC
Q 024550 185 SNYLGIA 191 (266)
Q Consensus 185 ~~~~~~~ 191 (266)
++.+...
T Consensus 324 ~k~~~~s 330 (361)
T smart00763 324 EKLLRNS 330 (361)
T ss_pred HHHhccC
Confidence 8777654
No 198
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=99.01 E-value=3.8e-10 Score=100.52 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=65.8
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCC-cEEEEeCCcccC------------hhhHHHHHHHcccC-Ceeeeecchh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKF-DVYDLELSNLLG------------NNDLRHILIATENK-SILVVEDIDC 93 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~-~~~~i~~~~~~~------------~~~l~~~~~~~~~~-~vl~iDeid~ 93 (266)
.++++|++||||+|+|||+|+-.+...+.. .-..+....++. ...+..+.....+. .+|++||++.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 457899999999999999999999998855 333444444432 12233333333344 4999999985
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK 153 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~ 153 (266)
- +.....++..|+..+-. .++++|+|+|.+
T Consensus 139 ~------------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T------------------------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred c------------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 3 23445677777777654 479999999964
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.01 E-value=1.8e-09 Score=95.16 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=47.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh---------hhHHHHHHHcccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN---------NDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~---------~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
.+++||||+|||||+|+.++|+++ |..++.++...+... ......+.......+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 689999999999999999999987 677777777665321 111122445566789999999865
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.6e-09 Score=98.03 Aligned_cols=135 Identities=24% Similarity=0.384 Sum_probs=89.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE-eCCcccC------hhhHHHHHHHcc--cCCeeeeecchhhHHHhHHHh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL-ELSNLLG------NNDLRHILIATE--NKSILVVEDIDCCIELQDRLS 102 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i-~~~~~~~------~~~l~~~~~~~~--~~~vl~iDeid~l~~~~~~~~ 102 (266)
.++||+||||+|||+||..+|...+.||+.+ ++.++.+ ...+...|..+. .-+||++|+++.|..-..-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 4599999999999999999999999999975 4444432 244667777663 4689999999998641111
Q ss_pred hhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc-ccccCCCcceeEEEcCCCCH-HHH
Q 024550 103 RARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD-PALLRPGRMDMHINMSHCTP-SGF 180 (266)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld-~al~r~~Rf~~~i~~~~p~~-~~~ 180 (266)
.| .-.+.++..|+-.+... .+.+.+.+|++||...+-|. -.++. +|+..|++|..+. ++.
T Consensus 617 -----GP----------RfSN~vlQaL~VllK~~-ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 617 -----GP----------RFSNLVLQALLVLLKKQ-PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQL 678 (744)
T ss_pred -----Cc----------hhhHHHHHHHHHHhccC-CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHH
Confidence 11 12233444444444433 23334556667776654442 34566 8999999999887 566
Q ss_pred HHHHHH
Q 024550 181 KMLASN 186 (266)
Q Consensus 181 ~~i~~~ 186 (266)
.+++..
T Consensus 679 ~~vl~~ 684 (744)
T KOG0741|consen 679 LEVLEE 684 (744)
T ss_pred HHHHHH
Confidence 666654
No 201
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=4.8e-09 Score=99.41 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEE-EeCC---c--------------c----cChhhHHHHHHHc-------
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD-LELS---N--------------L----LGNNDLRHILIAT------- 80 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~-i~~~---~--------------~----~~~~~l~~~~~~~------- 80 (266)
+.+.++|+||||||||++++.+|+.++..+++ .+.. . + .....+..++..+
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~ 188 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQML 188 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccc
Confidence 34559999999999999999999999765433 1111 0 0 0112233333322
Q ss_pred -----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhh-hhhccccCCCCceEEEEecCCCC
Q 024550 81 -----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLN-FIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 81 -----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
....||+|||++.++.. ....+..++. .... . +...+|+.+|..+.
T Consensus 189 g~~~~~~~~IILIDEiPn~~~r------------------------~~~~lq~lLr~~~~e---~-~~~pLI~I~TE~~~ 240 (637)
T TIGR00602 189 GDDLMTDKKIILVEDLPNQFYR------------------------DTRALHEILRWKYVS---I-GRCPLVFIITESLE 240 (637)
T ss_pred ccccCCceeEEEeecchhhchh------------------------hHHHHHHHHHHHhhc---C-CCceEEEEecCCcc
Confidence 24579999999987531 1112333433 1111 1 11223333332221
Q ss_pred --------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCC
Q 024550 155 --------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIA 191 (266)
Q Consensus 155 --------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~ 191 (266)
.|.++++...|+ ..|.|+..+.....+.+...+..+
T Consensus 241 ~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 241 GDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred ccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 123677753344 469999999999888888888654
No 202
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.00 E-value=1.9e-09 Score=94.15 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=50.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
..+|++||||+|||||+|+.++|+++ |.++..+....+.. ...+...+.......+|+|||+...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 35789999999999999999999998 67777777665431 1234556666778999999999854
No 203
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=3.4e-08 Score=84.75 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=40.7
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC----CCc-HHHHHHHhhcCCCCHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE----HPL-FVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~----~~~-~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+.+ |+...++++..+.++...++...+...+ ..+ .+.+..+....+..|..|..++
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~ 239 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILC 239 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHH
Confidence 3556 8888899999999999999888775432 223 3455666666777777776655
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.98 E-value=4.8e-09 Score=97.93 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=49.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHH-----------cCCcEEEEeCCcccChhhHHHH-H------------------HHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY-----------LKFDVYDLELSNLLGNNDLRHI-L------------------IAT 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~-----------~~~~~~~i~~~~~~~~~~l~~~-~------------------~~~ 80 (266)
...|||+|++||||+++|+++... .+.||+.++|..+.. ..+... | ...
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~ 320 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEI 320 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCccccccCccccccCCchhc
Confidence 346999999999999999999987 367999999998853 222222 1 112
Q ss_pred ccCCeeeeecchhhHH
Q 024550 81 ENKSILVVEDIDCCIE 96 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~ 96 (266)
..++.||||||+.|..
T Consensus 321 A~gGTLfLdeI~~Lp~ 336 (538)
T PRK15424 321 AHGGTLFLDEIGEMPL 336 (538)
T ss_pred cCCCEEEEcChHhCCH
Confidence 3578999999998853
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.98 E-value=7.5e-10 Score=93.51 Aligned_cols=63 Identities=27% Similarity=0.492 Sum_probs=48.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC---------hhhHHHHHHHcccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG---------NNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~---------~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
.+++|+||||||||+++.++|.++ +.+++.++..++.. ......++.......+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 479999999999999999999988 67777777665542 1122345555667889999999865
No 206
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.97 E-value=6e-09 Score=100.21 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=93.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH--------------cccCCeeeeecchh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA--------------TENKSILVVEDIDC 93 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~--------------~~~~~vl~iDeid~ 93 (266)
...|||+|++||||+++|+++.... +.+|+.++|..+....--..+|.. ...+++||||||+.
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 3459999999999999999999876 479999999988542212233321 23578999999998
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-CCC------CceEEEEecCCC-------CCCccc
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-SCG------DERIIIFTTNHK-------ERLDPA 159 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~------~~~ivi~ttn~~-------~~ld~a 159 (266)
|.. ..+..|+..++.-.. +.+ ..+.+|+||+.. ..+.+.
T Consensus 428 l~~---------------------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~d 480 (638)
T PRK11388 428 LSP---------------------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480 (638)
T ss_pred CCH---------------------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHH
Confidence 853 233445555543211 111 145688888753 223333
Q ss_pred ccCCCcceeEEEcCCCCHHHH----HHHHHHhhCCC------CCCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 160 LLRPGRMDMHINMSHCTPSGF----KMLASNYLGIA------EHPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 160 l~r~~Rf~~~i~~~~p~~~~~----~~i~~~~~~~~------~~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
|.. |+. .+.+..|.-.+| ..|+.+|+... ...+..+....+..+. .+..++.+++.
T Consensus 481 L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~ 548 (638)
T PRK11388 481 LYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIE 548 (638)
T ss_pred Hhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHH
Confidence 444 442 244555555444 45555555322 1224455545555444 56667776663
No 207
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=4.8e-09 Score=95.68 Aligned_cols=160 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHH------------------HHcccCCe
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HIL------------------IATENKSI 85 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~------------------~~~~~~~v 85 (266)
.+.+..||+.|.+||||..+|+++.+.. +.||+.++|+.+.. .-+. .+| ....+++.
T Consensus 265 A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGT 343 (560)
T COG3829 265 AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGT 343 (560)
T ss_pred cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCe
Confidence 3345679999999999999999999877 68999999999842 2222 122 12235789
Q ss_pred eeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc-------cccCCCCceEEEEecCCC-----
Q 024550 86 LVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG-------LWSSCGDERIIIFTTNHK----- 153 (266)
Q Consensus 86 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~~~~~~ivi~ttn~~----- 153 (266)
||||||..|. ..++..||..|+. ........+-||+|||..
T Consensus 344 LFLDEIgemp---------------------------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 344 LFLDEIGEMP---------------------------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred EEehhhccCC---------------------------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 9999999874 3355667777752 111222357799999964
Q ss_pred --CCCcccccCCCcceeEEEcCCCCHHHHH----HHHHHhhCC----C---CCCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 154 --ERLDPALLRPGRMDMHINMSHCTPSGFK----MLASNYLGI----A---EHPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 154 --~~ld~al~r~~Rf~~~i~~~~p~~~~~~----~i~~~~~~~----~---~~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
..+-..|.- |+. ++.+..|.--+|. .+...|+.+ . -..+..+.-.++..+. .+.+++.|++-
T Consensus 397 ~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 397 AEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred hcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 222333444 553 3666666665543 344444432 1 1223445444444444 56777777763
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.9e-09 Score=91.80 Aligned_cols=65 Identities=29% Similarity=0.507 Sum_probs=50.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh-------hhHHH-HHHHcccCCeeeeecchhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN-------NDLRH-ILIATENKSILVVEDIDCC 94 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~-------~~l~~-~~~~~~~~~vl~iDeid~l 94 (266)
.+.+++|+||||||||+|+-|+++++ |.+++.+...++... ..... +......-.+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 36689999999999999999999988 778888888777531 12222 2333677899999999975
No 209
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.93 E-value=9.4e-09 Score=93.42 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=97.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHHH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HILI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~~-----------------~~~~~~vl~iD 89 (266)
...|||+|++||||..+||+|.... +.||+.++|..+.. ..+. .+|. ....++.||||
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLD 242 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLD 242 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-HHHHHHhhcccccCcCCcccccCcceeEcCCceEEee
Confidence 3459999999999999999999877 56999999999853 2232 2332 12357999999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc-cccC------CCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG-LWSS------CGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~------~~~~~ivi~ttn~~-------~~ 155 (266)
||..|.. .++..||..+.. ...+ ....+-||++||.. ..
T Consensus 243 EI~~mpl---------------------------~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~ 295 (464)
T COG2204 243 EIGEMPL---------------------------ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGR 295 (464)
T ss_pred ccccCCH---------------------------HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCC
Confidence 9998852 355567776652 1111 12346799999863 23
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHH----HHHHHhhCCC-------CCCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFK----MLASNYLGIA-------EHPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~----~i~~~~~~~~-------~~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
+-+.|.. |+. ++.+..|.--+|. .|+.+|+... ...+..+.-.....+. .+.+++.|++.
T Consensus 296 FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ve 368 (464)
T COG2204 296 FREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVE 368 (464)
T ss_pred cHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445555 663 4777777776554 5566665432 1223333333333333 45666666653
No 210
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.92 E-value=3.8e-09 Score=97.94 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=73.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC----------------------------CcEEEEeCCcc----cC-hhhHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK----------------------------FDVYDLELSNL----LG-NNDLRHIL 77 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~----------------------------~~~~~i~~~~~----~~-~~~l~~~~ 77 (266)
...++|+||||||||++++.++..+. .||...+++.. .+ ....+.-.
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~ 290 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGE 290 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhh
Confidence 45699999999999999999987441 11111111110 00 00011112
Q ss_pred HHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc---------cCCCCceEEEE
Q 024550 78 IATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW---------SSCGDERIIIF 148 (266)
Q Consensus 78 ~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ivi~ 148 (266)
.....+++|||||++.+.. ..+..|++.|+... ...+.++.+|+
T Consensus 291 i~lA~~GvLfLDEi~e~~~---------------------------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIa 343 (499)
T TIGR00368 291 ISLAHNGVLFLDELPEFKR---------------------------SVLDALREPIEDGSISISRASAKIFYPARFQLVA 343 (499)
T ss_pred hhccCCCeEecCChhhCCH---------------------------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEE
Confidence 2344679999999997742 23344444443211 11124578899
Q ss_pred ecCCC-----C------------------CCcccccCCCcceeEEEcCCCCHHH
Q 024550 149 TTNHK-----E------------------RLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 149 ttn~~-----~------------------~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
++|.- . .+...|++ ||+.++.++.++.++
T Consensus 344 a~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 344 AMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred ecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 98852 1 47788899 999999999887664
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=5.9e-08 Score=87.02 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=106.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChhh---------------------HHHHHHHc----
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNND---------------------LRHILIAT---- 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~~---------------------l~~~~~~~---- 80 (266)
+.++++.|-||||||....-+-..+ ....++++|..+..... ....|...
T Consensus 175 ~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~ 254 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS 254 (529)
T ss_pred CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc
Confidence 5579999999999998877665444 23457888887653211 11222221
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCc---
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLD--- 157 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld--- 157 (266)
+.+-++++||+|.|+. .-+..|..+..+....+..+++|+..|..+.-|
T Consensus 255 k~~~llVlDEmD~L~t----------------------------r~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 255 KFMLLLVLDEMDHLIT----------------------------RSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred cceEEEEechhhHHhh----------------------------cccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 2357899999999973 112344455555555567899999999875533
Q ss_pred ccccC-CCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH--HHHHHHhhcCCCCHHHHHHHH
Q 024550 158 PALLR-PGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF--VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 158 ~al~r-~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.|.. .+.-...+.|++++.++..+|+...+........ ..+...+.+.....+|+..+|
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 33332 2334467999999999999999999877654332 356666777777777877766
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.91 E-value=4.7e-09 Score=86.26 Aligned_cols=130 Identities=17% Similarity=0.242 Sum_probs=86.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC-----cEEEEeCCcccChhhHH---HHHHHcc------cCCeeeeecchhhHHHh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF-----DVYDLELSNLLGNNDLR---HILIATE------NKSILVVEDIDCCIELQ 98 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~-----~~~~i~~~~~~~~~~l~---~~~~~~~------~~~vl~iDeid~l~~~~ 98 (266)
+++|.|||||||||-+.++|.++-. .++++++++-.+..-++ ..|...+ +.-|+++||+|++..-
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g- 128 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG- 128 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-
Confidence 5999999999999999999998833 35677777665543333 3343322 3469999999988530
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHH
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPS 178 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~ 178 (266)
.+..+-..|+-.. ...-|..++|..+.+-..+.+ ||.. +.|...+..
T Consensus 129 --------------------------AQQAlRRtMEiyS----~ttRFalaCN~s~KIiEPIQS--RCAi-LRysklsd~ 175 (333)
T KOG0991|consen 129 --------------------------AQQALRRTMEIYS----NTTRFALACNQSEKIIEPIQS--RCAI-LRYSKLSDQ 175 (333)
T ss_pred --------------------------HHHHHHHHHHHHc----ccchhhhhhcchhhhhhhHHh--hhHh-hhhcccCHH
Confidence 1112223333221 234577889998888888888 8854 777777777
Q ss_pred HHHHHHHHhhCCCCCCcH
Q 024550 179 GFKMLASNYLGIAEHPLF 196 (266)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~ 196 (266)
+...-+......++....
T Consensus 176 qiL~Rl~~v~k~Ekv~yt 193 (333)
T KOG0991|consen 176 QILKRLLEVAKAEKVNYT 193 (333)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 766555555555555543
No 213
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.91 E-value=2.6e-09 Score=98.78 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=74.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC----cEEEEeC------C-----ccc-----------------Ch-hhHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF----DVYDLEL------S-----NLL-----------------GN-NDLRHI 76 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~----~~~~i~~------~-----~~~-----------------~~-~~l~~~ 76 (266)
....++|+||||||||++++.++..+.. ..+++.. . .+. +. ...+.-
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 3456999999999999999999976521 1111110 0 000 00 011112
Q ss_pred HHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc---------cCCCCceEEE
Q 024550 77 LIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW---------SSCGDERIII 147 (266)
Q Consensus 77 ~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ivi 147 (266)
......+++|||||++.+. ..++..|++.|+.-. ...+.++.+|
T Consensus 289 ~l~~A~gGvLfLDEi~e~~---------------------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lI 341 (506)
T PRK09862 289 EISLAHNGVLFLDELPEFE---------------------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLV 341 (506)
T ss_pred HhhhccCCEEecCCchhCC---------------------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEE
Confidence 2334567999999998763 234455555553211 0113457899
Q ss_pred EecCCCC---------------------CCcccccCCCcceeEEEcCCCCHH
Q 024550 148 FTTNHKE---------------------RLDPALLRPGRMDMHINMSHCTPS 178 (266)
Q Consensus 148 ~ttn~~~---------------------~ld~al~r~~Rf~~~i~~~~p~~~ 178 (266)
+|+|... .++.++++ ||++++.++.|+.+
T Consensus 342 Aa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 342 AAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred EeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 9999642 36778999 99999999999876
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.91 E-value=5.1e-08 Score=91.15 Aligned_cols=142 Identities=17% Similarity=0.230 Sum_probs=93.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccChhhH----------------------HHHHH-
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGNNDL----------------------RHILI- 78 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~~~l----------------------~~~~~- 78 (266)
.++++.|-||||||.+++.+.+++ ...+++++.-.+.+...+ ...|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 369999999999999999999876 366778887777653222 12222
Q ss_pred --HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC-
Q 024550 79 --ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER- 155 (266)
Q Consensus 79 --~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~- 155 (266)
....++||+|||+|.|.. ..+. ++..+..+....+.+.+||+..|..+.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvt------------------------r~Qd----VlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVT------------------------RSQD----VLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred CCCCCCCEEEEeccHHHHhc------------------------ccHH----HHHHHhcCCcCCCCceEEEEecccccCH
Confidence 123479999999999974 1122 223333333344567788887775543
Q ss_pred ---CcccccCCCcce-eEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh
Q 024550 156 ---LDPALLRPGRMD-MHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA 204 (266)
Q Consensus 156 ---ld~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 204 (266)
|....-+ |++ ..|.|..++..|..+|+...+... ..+...+.++++
T Consensus 555 Er~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielva 604 (767)
T KOG1514|consen 555 ERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVA 604 (767)
T ss_pred HHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHH
Confidence 2233334 555 459999999999999999888766 344445545544
No 215
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.89 E-value=3.5e-08 Score=87.70 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=59.6
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc---------cccCCCCceEEEEecCC
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG---------LWSSCGDERIIIFTTNH 152 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~ivi~ttn~ 152 (266)
+.+||++||+..|. ..+++.||+.+.. ..-+-+-++++|+|+|+
T Consensus 144 nRGIlYvDEvnlL~---------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNP 196 (423)
T COG1239 144 NRGILYVDEVNLLD---------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNP 196 (423)
T ss_pred cCCEEEEecccccc---------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCc
Confidence 46999999999874 3455666666653 22122346899999997
Q ss_pred C-CCCcccccCCCcceeEEEcCCCCH-HHHHHHHHHhhCCC
Q 024550 153 K-ERLDPALLRPGRMDMHINMSHCTP-SGFKMLASNYLGIA 191 (266)
Q Consensus 153 ~-~~ld~al~r~~Rf~~~i~~~~p~~-~~~~~i~~~~~~~~ 191 (266)
- ..|-+.|+. ||+..|.+..|.. ++|.+|+.+-....
T Consensus 197 EeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 197 EEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred cccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 6 567889999 9999999977655 66788888777663
No 216
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.89 E-value=1.3e-08 Score=95.01 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=49.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHH-HHH------------------HcccCCeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRH-ILI------------------ATENKSILVV 88 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~-~~~------------------~~~~~~vl~i 88 (266)
...|||+|++||||+++|+++.... +.||+.++|..+.. ..+.. +|. ....++.|||
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfL 313 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFL 313 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCcccccccccccccccchhhcCCceEEe
Confidence 3469999999999999999999765 57999999998853 22222 221 1235789999
Q ss_pred ecchhhHH
Q 024550 89 EDIDCCIE 96 (266)
Q Consensus 89 Deid~l~~ 96 (266)
|||+.|..
T Consensus 314 deI~~Lp~ 321 (526)
T TIGR02329 314 DEIGEMPL 321 (526)
T ss_pred cChHhCCH
Confidence 99998853
No 217
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=1.1e-08 Score=77.99 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=47.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC--CcEEEEeCCcccChhh----HHHHHHHc--ccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK--FDVYDLELSNLLGNND----LRHILIAT--ENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~--~~~~~i~~~~~~~~~~----l~~~~~~~--~~~~vl~iDeid~l 94 (266)
+.++|+||+|||||++++.++..+. .+++++++.+...... +...+... ..+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 7788888876543211 22333333 35799999999977
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.88 E-value=2.2e-09 Score=79.33 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=43.7
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
|+||||||+|||++++.|+..+...+-......+.....-...+.......++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 58999999999999999998885443222222222222344567777788999999999653
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.86 E-value=4.7e-08 Score=91.55 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=92.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHHH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HILI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~~-----------------~~~~~~vl~iD 89 (266)
+..|||+|++||||+++|+++.... +.+|+.++|..+.. ..+. .+|. ....+++||||
T Consensus 210 ~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ld 288 (509)
T PRK05022 210 DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLD 288 (509)
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEec
Confidence 4469999999999999999999875 57999999998853 2222 1221 22457889999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-------cCCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-------SSCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~ivi~ttn~~-------~~ 155 (266)
||+.|.. ..+..|++.++... ......+-+|++||.. ..
T Consensus 289 eI~~L~~---------------------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 289 EIGELPL---------------------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred ChhhCCH---------------------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 9998853 23344455543211 0111246678877753 23
Q ss_pred CcccccCCCcceeEEEcCCCCHHHH----HHHHHHhhCCC-------CCCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGF----KMLASNYLGIA-------EHPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~----~~i~~~~~~~~-------~~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. |+.. +.+..|.-.+| ..|+.+|+... ...+..+....+..+. .+-.++.+.+
T Consensus 342 f~~dL~~--rl~~-~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i 413 (509)
T PRK05022 342 FRADLYH--RLSV-FPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVI 413 (509)
T ss_pred ccHHHHh--cccc-cEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHH
Confidence 4555555 6542 44445554443 35555554321 1234455545555544 5666777655
No 220
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.3e-07 Score=79.90 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=76.4
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc----------------------EEEEeCCc-ccChhhHHHHHHHc---c-
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD----------------------VYDLELSN-LLGNNDLRHILIAT---E- 81 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~----------------------~~~i~~~~-~~~~~~l~~~~~~~---~- 81 (266)
.+++.+||+||+|+||..+|.++|..+-+. ++.+.... ......++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999877332 12211110 11222333333221 1
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
..-|++|+++|.+- ....+.||..++ .++.+.++|.+|+.++.+.+
T Consensus 85 e~~~~KV~II~~ae~m~---------------------------~~AaNaLLK~LE----EPp~~t~fiLit~~~~~lLp 133 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN---------------------------KQSANSLLKLIE----EPPKNTYGIFTTRNENNILN 133 (261)
T ss_pred hcCCCEEEEeccHhhhC---------------------------HHHHHHHHHhhc----CCCCCeEEEEEECChHhCch
Confidence 24688888888763 234566677666 45678999999999999999
Q ss_pred cccCCCcceeEEEcCCC
Q 024550 159 ALLRPGRMDMHINMSHC 175 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p 175 (266)
.+++ || ..+.|+.+
T Consensus 134 TI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 134 TILS--RC-VQYVVLSK 147 (261)
T ss_pred Hhhh--he-eeeecCCh
Confidence 9999 98 44778776
No 221
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.1e-07 Score=80.93 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=104.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC-------------cEEEEeC-CcccChhhHHHHHHHc-------ccCCeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF-------------DVYDLEL-SNLLGNNDLRHILIAT-------ENKSILVV 88 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~-------------~~~~i~~-~~~~~~~~l~~~~~~~-------~~~~vl~i 88 (266)
.++.+||+|+.|.||+.+++.++..+.+ .++.++. ....+...++.+.... ...-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 3567999999999999999999988722 1223331 1112334555554443 25679999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCccee
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDM 168 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~ 168 (266)
|++|.+. ....+.||..|+. ++...++|.+|+.++.+.+++.+ || .
T Consensus 97 ~~~e~m~---------------------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~S--Rc-~ 142 (299)
T PRK07132 97 KNIEKTS---------------------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVS--RC-Q 142 (299)
T ss_pred ecccccC---------------------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHh--Ce-E
Confidence 9998763 2345567777775 35667888888788999999999 88 5
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 024550 169 HINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLES 236 (266)
Q Consensus 169 ~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~ 236 (266)
.++|+.|+.++....+... + ...+...++....-+++.....+. .......+.+..|+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~~-~-----~~~~~a~~~a~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~ 202 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSK-N-----KEKEYNWFYAYIFSNFEQAEKYIN--KESENLLKKFEEALNK 202 (299)
T ss_pred EEECCCCCHHHHHHHHHHc-C-----CChhHHHHHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 6999999999888766543 1 222333333332235666655542 2233444445455433
No 222
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.85 E-value=3.2e-08 Score=92.79 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHHH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HILI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~~-----------------~~~~~~vl~iD 89 (266)
...+||+|++||||+++|+++.... +.+|+.++|+.+.. ..+. .+|. ....++.||||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Ld 305 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLD 305 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEe
Confidence 3459999999999999999997765 46899999998753 2222 2221 12346889999
Q ss_pred cchhhHH
Q 024550 90 DIDCCIE 96 (266)
Q Consensus 90 eid~l~~ 96 (266)
||+.+..
T Consensus 306 eI~~L~~ 312 (520)
T PRK10820 306 EIGEMSP 312 (520)
T ss_pred ChhhCCH
Confidence 9998853
No 223
>PRK09183 transposase/IS protein; Provisional
Probab=98.85 E-value=6.3e-09 Score=89.00 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=45.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------hhhHHHHHHH-cccCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------NNDLRHILIA-TENKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~-~~~~~vl~iDeid~l 94 (266)
..+++|+||||||||+++.+++..+ |..+..+++..+.. ...+...+.. ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999998664 66676666554431 1123334433 456789999999865
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=4e-08 Score=82.70 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=98.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCC-c--E--------------------------EEEeCCcccCh--hhHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKF-D--V--------------------------YDLELSNLLGN--NDLRHILIAT 80 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~-~--~--------------------------~~i~~~~~~~~--~~l~~~~~~~ 80 (266)
..+++|||+|+||-|.+.++-+++.. . - +++++++.... --+++++...
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 36999999999999999999888721 1 1 12222222111 1134555443
Q ss_pred c-----------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEe
Q 024550 81 E-----------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT 149 (266)
Q Consensus 81 ~-----------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~t 149 (266)
. .--|++|.|+|.|.. ..+..|-..|+... ...-+|..
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~---------------------------dAQ~aLRRTMEkYs----~~~RlIl~ 163 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR---------------------------DAQHALRRTMEKYS----SNCRLILV 163 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH---------------------------HHHHHHHHHHHHHh----cCceEEEE
Confidence 2 236899999998853 23444556666553 34668888
Q ss_pred cCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH-HHHhhcCC
Q 024550 150 TNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI-EKLIATAK 207 (266)
Q Consensus 150 tn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~ 207 (266)
+|....+-+++.+ || ..|.+|.|+.++...++.....+++..+..++ ..++.+.+
T Consensus 164 cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 164 CNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred ecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 9999999999999 88 66999999999999999999999988877655 34444433
No 225
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=5.7e-08 Score=94.19 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=90.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HH-----------------HHHcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HI-----------------LIATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~-----------------~~~~~~~~vl~iD 89 (266)
...+||+|++|||||++|+++.... +.+++.++|..+... .+. .+ ......+++||||
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~-~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ld 477 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG-LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLD 477 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh-HhhhhhcCcccccccccccchhhHHHhcCCCeEEEe
Confidence 3469999999999999999999865 579999999987421 111 11 1123457899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-c------CCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-S------SCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~------~~~~~~ivi~ttn~~-------~~ 155 (266)
||+.+.. .....|+..++... . .....+-+|++|+.. ..
T Consensus 478 ei~~L~~---------------------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 530 (686)
T PRK15429 478 EVGDMPL---------------------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 530 (686)
T ss_pred chhhCCH---------------------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCc
Confidence 9998853 23344455543211 0 111346688888753 12
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHH----HHHHHhhCCC----CC---CcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFK----MLASNYLGIA----EH---PLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~----~i~~~~~~~~----~~---~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. |+. .+.+..|.-.+|. .|+.+|+... +. .+..+....+..+. .+-.++.+.+
T Consensus 531 f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i 602 (686)
T PRK15429 531 FRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVI 602 (686)
T ss_pred ccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHH
Confidence 3333444 543 3455555555543 4555555322 11 23444444444444 5566666665
No 226
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.83 E-value=3.5e-09 Score=81.89 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=44.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC---cEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF---DVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIE 96 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~---~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~ 96 (266)
...+||+|++||||+++|++++...+. +++.++|.... .+++..+ .++.|+|+|+|.+..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a-~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA-KGGTLYLKNIDRLSP 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC-TTSEEEEECGCCS-H
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc-CCCEEEECChHHCCH
Confidence 346999999999999999999987753 55666666543 3444444 889999999998853
No 227
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=6.4e-07 Score=77.44 Aligned_cols=145 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc------------------------EEEEeCCc-ccChhhHHHHHHHcc---
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD------------------------VYDLELSN-LLGNNDLRHILIATE--- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~-~~~~~~l~~~~~~~~--- 81 (266)
.++++||+|| +||+++|+.+|..+.+. ++.+.... ..+...++++.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4678999996 68999999999877332 22222211 112234444433322
Q ss_pred ---cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 82 ---NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 82 ---~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
...|++||++|.|. ....|.||+.++. ++.+.++|.+|+.++.+.|
T Consensus 101 ~~~~~kV~II~~ad~m~---------------------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 101 YEGKQQVFIIKDADKMH---------------------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred ccCCcEEEEeehhhhcC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCch
Confidence 34689999999774 2345667777764 4567899999999999999
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+.+ || ..|.|+. +.+...+++.. .+. ..+...++.....+++......
T Consensus 150 TI~S--Rc-q~i~f~~-~~~~~~~~L~~----~g~--~~~~a~~la~~~~s~~~A~~l~ 198 (290)
T PRK07276 150 TIKS--RT-QIFHFPK-NEAYLIQLLEQ----KGL--LKTQAELLAKLAQSTSEAEKLA 198 (290)
T ss_pred HHHH--cc-eeeeCCC-cHHHHHHHHHH----cCC--ChHHHHHHHHHCCCHHHHHHHh
Confidence 9999 98 5688876 55555555542 221 1222333443344676666544
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.81 E-value=6e-08 Score=90.29 Aligned_cols=49 Identities=31% Similarity=0.540 Sum_probs=36.3
Q ss_pred HHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
++.+..|+.... .+..+.+-+||+||||||||++++.+|+++|..+.+-
T Consensus 28 v~eV~~wl~~~~----~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 28 VEEVRSWLEEMF----SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHHHh----ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 455677775421 2333445688899999999999999999998877763
No 229
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.80 E-value=5.3e-08 Score=81.15 Aligned_cols=158 Identities=21% Similarity=0.276 Sum_probs=82.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE---EEEeCCcccC--------------------------------------
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV---YDLELSNLLG-------------------------------------- 69 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~---~~i~~~~~~~-------------------------------------- 69 (266)
...++|+||+|+|||++++.+.......- +.+.......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 56799999999999999999999883211 1111111100
Q ss_pred ---hhhHHHHHHH---cccCCeeeeecchhhH-HHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCC
Q 024550 70 ---NNDLRHILIA---TENKSILVVEDIDCCI-ELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGD 142 (266)
Q Consensus 70 ---~~~l~~~~~~---~~~~~vl~iDeid~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 142 (266)
...+..++.. ...+.||+|||++.+. .. ......+..+.+.++..... ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~-~~ 156 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS----------------------EEDKDFLKSLRSLLDSLLSQ-QN 156 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT----------------------TTTHHHHHHHHHHHHH-----TT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc----------------------cchHHHHHHHHHHHhhcccc-CC
Confidence 0111122222 1234899999999885 20 11233444555555553222 12
Q ss_pred ceEEEEecCCC---C--CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCC---cHHHHHHHhhcCCCCHHHHH
Q 024550 143 ERIIIFTTNHK---E--RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHP---LFVEIEKLIATAKVTPADVA 214 (266)
Q Consensus 143 ~~ivi~ttn~~---~--~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~---~~~~~~~l~~~~~~s~~~i~ 214 (266)
..+|++++... . .-...+.. |+.. +.++..+.++..+++...+... .. ...++..+..-.+..|+.|.
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 23334444311 1 12344555 8877 9999999999999999877554 32 34566777777778887775
Q ss_pred H
Q 024550 215 E 215 (266)
Q Consensus 215 ~ 215 (266)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 230
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.79 E-value=1.2e-07 Score=81.44 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=93.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHH-HHH-----------------------H
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLR-HIL-----------------------I 78 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~-~~~-----------------------~ 78 (266)
.++||+|++|.|||++++.++... ..|++.+.+..-.+...+. .++ .
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998755 2567777655443322221 111 1
Q ss_pred HcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC--C
Q 024550 79 ATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER--L 156 (266)
Q Consensus 79 ~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~--l 156 (266)
...+.-+|+|||++.+..-. ..-...+++.+..+.....-.++.+||...... -
T Consensus 142 r~~~vrmLIIDE~H~lLaGs------------------------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~ 197 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS------------------------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRT 197 (302)
T ss_pred HHcCCcEEEeechHHHhccc------------------------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhcc
Confidence 22346799999999975311 111233444444443333344666665543332 2
Q ss_pred cccccCCCcceeEEEcCCCCH-HHHHHHHHHhh---CCCC--CCcHHHH-HHHhhcCCCCHHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTP-SGFKMLASNYL---GIAE--HPLFVEI-EKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~-~~~~~i~~~~~---~~~~--~~~~~~~-~~l~~~~~~s~~~i~~~l~ 218 (266)
|+.+-+ ||.. +.+|.... ++...++..+- +-.. .-...++ ..+....+.+.+++.+++.
T Consensus 198 D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 198 DPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLN 263 (302)
T ss_pred CHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHH
Confidence 788888 9954 66666554 34455554443 3221 1122344 4566667788888888873
No 231
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=2.2e-08 Score=89.48 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccChhhHHHHHHH-----------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGNNDLRHILIA-----------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~~~l~~~~~~-----------------~~~~~vl~iD 89 (266)
...+|++|++||||+.+|+.+.... ..||+.+||+.+..+-....+|.. ...+++||+|
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD 180 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence 4469999999999999999887543 679999999999765444444431 2257999999
Q ss_pred cchhhHH
Q 024550 90 DIDCCIE 96 (266)
Q Consensus 90 eid~l~~ 96 (266)
||..+..
T Consensus 181 EI~~LP~ 187 (403)
T COG1221 181 EIHRLPP 187 (403)
T ss_pred hhhhCCH
Confidence 9998864
No 232
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.78 E-value=3.9e-08 Score=83.66 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh
Q 024550 153 KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA 204 (266)
Q Consensus 153 ~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 204 (266)
|..+|-.|+. |+ ..|...+++.++.++|++..-..+...+..+.-.++.
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 6778999999 88 6799999999999999998887777666665544444
No 233
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.1e-08 Score=90.33 Aligned_cols=25 Identities=44% Similarity=0.784 Sum_probs=22.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++|++||||||||++++.+..-+
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcccC
Confidence 5789999999999999999887655
No 234
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.76 E-value=2.2e-08 Score=97.23 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=76.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-------CcEEEEeCCcccC-hh----h--HHHHHHHcccCCeeeeecchhhHHHh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-------FDVYDLELSNLLG-NN----D--LRHILIATENKSILVVEDIDCCIELQ 98 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-------~~~~~i~~~~~~~-~~----~--l~~~~~~~~~~~vl~iDeid~l~~~~ 98 (266)
.|||+|+||||||.+++++++... .++..+.+..... .. . +..-......+++++|||++.+..
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~-- 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN-- 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH--
Confidence 599999999999999999998653 2333333332211 00 0 000001123578999999998742
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc---------ccCCCCceEEEEecCCC-------------CCC
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL---------WSSCGDERIIIFTTNHK-------------ERL 156 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~~ivi~ttn~~-------------~~l 156 (266)
.....|+..|+.- ......+.-||||+|+. -.|
T Consensus 572 -------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~L 626 (915)
T PTZ00111 572 -------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINI 626 (915)
T ss_pred -------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCC
Confidence 2234455555422 11223467899999974 246
Q ss_pred cccccCCCcceeE-EEcCCCCHHHHHHHHHH
Q 024550 157 DPALLRPGRMDMH-INMSHCTPSGFKMLASN 186 (266)
Q Consensus 157 d~al~r~~Rf~~~-i~~~~p~~~~~~~i~~~ 186 (266)
+++|++ ||+.. +-++.|+.+.=..|..+
T Consensus 627 p~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 627 SPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred ChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 799999 99865 55677777654444433
No 235
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=2e-07 Score=80.36 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc----------------EEEEeCCc---ccChhhHHHHHHHcc------cCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD----------------VYDLELSN---LLGNNDLRHILIATE------NKS 84 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~----------------~~~i~~~~---~~~~~~l~~~~~~~~------~~~ 84 (266)
.++.+||+||+|+||+.+|.++|..+.+. ++.+.+.. ..+-..++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 46789999999999999999999887432 23332221 112333444433321 246
Q ss_pred eeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCC
Q 024550 85 ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPG 164 (266)
Q Consensus 85 vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~ 164 (266)
|++||++|.+- ....|.||+.|+. ++.++++|..|+.++.+.|.+++
T Consensus 98 v~ii~~ad~mt---------------------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S-- 144 (290)
T PRK05917 98 IYIIHEADRMT---------------------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS-- 144 (290)
T ss_pred EEEEechhhcC---------------------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--
Confidence 88999999774 2355677777774 45679999999999999999999
Q ss_pred cceeEEEcCCCC
Q 024550 165 RMDMHINMSHCT 176 (266)
Q Consensus 165 Rf~~~i~~~~p~ 176 (266)
|| ..+.|+.+.
T Consensus 145 Rc-q~~~~~~~~ 155 (290)
T PRK05917 145 RS-LSIHIPMEE 155 (290)
T ss_pred cc-eEEEccchh
Confidence 88 557887553
No 236
>PRK06921 hypothetical protein; Provisional
Probab=98.73 E-value=3.1e-08 Score=84.98 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=44.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccCh-----hhHHHHHHHcccCCeeeeecchh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGN-----NDLRHILIATENKSILVVEDIDC 93 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~-----~~l~~~~~~~~~~~vl~iDeid~ 93 (266)
..+++|+||||||||+|+.++|+++ |.++++++...+... ......+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4679999999999999999999986 456667765443211 11222334455689999999953
No 237
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.5e-07 Score=88.83 Aligned_cols=95 Identities=25% Similarity=0.377 Sum_probs=65.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------------hhhHHHHHHHc--ccCCeeeeecch
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------------NNDLRHILIAT--ENKSILVVEDID 92 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------------~~~l~~~~~~~--~~~~vl~iDeid 92 (266)
...++|.||.|+|||-+|+++|..+ .-.++.++++.++. ......+.... +..+||+|||||
T Consensus 591 ~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 591 DAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred CeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh
Confidence 3458999999999999999999988 35678888886331 12222333333 357999999999
Q ss_pred hhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC-------CceEEEEecCC
Q 024550 93 CCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG-------DERIIIFTTNH 152 (266)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-------~~~ivi~ttn~ 152 (266)
.. ....++.|++.++...-+.+ .+.|||+|+|.
T Consensus 671 kA---------------------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 671 KA---------------------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred hc---------------------------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 54 24466667777764433322 35789999885
No 238
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.72 E-value=1.5e-07 Score=86.76 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=92.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH------------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA------------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~vl~iD 89 (266)
...++++|++||||+++|+++.... +.+|+.++|..+.. ..+...+.. ...+++||||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 240 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 240 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEe
Confidence 3469999999999999999998876 46899999998843 333332211 1347899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-c------CCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-S------SCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~------~~~~~~ivi~ttn~~-------~~ 155 (266)
|++.|.. ..+..|+..++... . .....+.+|+||+.. ..
T Consensus 241 ~i~~l~~---------------------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 241 EIGDLPL---------------------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred chhhCCH---------------------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 9998853 23344555554221 1 011245677777654 33
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHH----HHHHHhhCCC----C---CCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFK----MLASNYLGIA----E---HPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~----~i~~~~~~~~----~---~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. |+. .+.+..|.-.+|. .++.+|+... + ..+..+.-..+..+. .+..++.+++
T Consensus 294 ~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i 365 (445)
T TIGR02915 294 FREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKV 365 (445)
T ss_pred ccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHH
Confidence 4555555 653 3555566655554 3445444321 1 234444444444444 5566666665
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=4.6e-08 Score=74.48 Aligned_cols=38 Identities=34% Similarity=0.540 Sum_probs=29.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc--------CCcEEEEeCCccc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL--------KFDVYDLELSNLL 68 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~--------~~~~~~i~~~~~~ 68 (266)
++.++++||||+|||++++.++..+ ..+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 3569999999999999999999988 6777877766554
No 240
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=86.85 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcE-EEEeCCcccCh------------hhHHHHHHH-cccCCeeeeecchh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV-YDLELSNLLGN------------NDLRHILIA-TENKSILVVEDIDC 93 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~-~~i~~~~~~~~------------~~l~~~~~~-~~~~~vl~iDeid~ 93 (266)
..+++|+++|||-|+|||+|.-.....+..+- ..+....++.. ..+..+-.. +.+-.||++||+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee
Confidence 45678999999999999999999998885543 44444444310 111111111 23457999999984
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC-CCCC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH-KERL 156 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~-~~~l 156 (266)
- +.....++..|++.|-. .++++|+|+|. |++|
T Consensus 142 t------------------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 142 T------------------------DIADAMILGRLLEALFA------RGVVLVATSNTAPDNL 175 (367)
T ss_pred c------------------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCChHHh
Confidence 2 34446688888888764 47999999995 4444
No 241
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.66 E-value=2.3e-07 Score=85.70 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=91.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH------------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA------------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~vl~iD 89 (266)
...++++|++||||+++++++.... +.+++.++|..+.. ..+...+.. ...+++||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 3469999999999999999998765 57999999998843 233322211 2346899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-------CCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-------SCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~ivi~ttn~~-------~~ 155 (266)
|++.+.. ..+..|+..++.... ....++.+|+|||.. ..
T Consensus 245 ~i~~l~~---------------------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 245 EIGEMPL---------------------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred chhhCCH---------------------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 9998854 123445555442210 011236788888753 23
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHH----HHHHHhhCCC----C---CCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFK----MLASNYLGIA----E---HPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~----~i~~~~~~~~----~---~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
+.+.+.. |+. .+.+..|.-.+|. .++..|+... + ..+..+.-..+..+. .+..++.+.+.
T Consensus 298 ~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~ 370 (457)
T PRK11361 298 FREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIE 370 (457)
T ss_pred chHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 4444554 553 3556666665543 3444444321 1 223444444444444 45666666653
No 242
>PF05729 NACHT: NACHT domain
Probab=98.65 E-value=2.7e-07 Score=72.81 Aligned_cols=132 Identities=18% Similarity=0.286 Sum_probs=69.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC---------cEEEEeCCcccChh---hHHHHH------------------HHccc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF---------DVYDLELSNLLGNN---DLRHIL------------------IATEN 82 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~---------~~~~i~~~~~~~~~---~l~~~~------------------~~~~~ 82 (266)
-++|+|+||+|||++++.++..+.. -++.+.+....... .+...+ .....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999987711 12233333332111 122111 22345
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC--CCCcccc
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK--ERLDPAL 160 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~--~~ld~al 160 (266)
..+++||.+|.+....... ........+...+.... . .++-++.|++.. ..+...+
T Consensus 82 ~~llilDglDE~~~~~~~~-------------------~~~~~~~~l~~l~~~~~-~--~~~~liit~r~~~~~~~~~~~ 139 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQ-------------------ERQRLLDLLSQLLPQAL-P--PGVKLIITSRPRAFPDLRRRL 139 (166)
T ss_pred ceEEEEechHhcccchhhh-------------------HHHHHHHHHHHHhhhcc-C--CCCeEEEEEcCChHHHHHHhc
Confidence 6899999999885411110 00111111222222211 1 223333333321 1222222
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
.. . ..+.++..+.+++.++++.+++.
T Consensus 140 ~~---~-~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 140 KQ---A-QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CC---C-cEEEECCCCHHHHHHHHHHHhhc
Confidence 22 1 56899999999999999998864
No 243
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.65 E-value=4.7e-07 Score=83.98 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=93.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH------------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA------------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~vl~iD 89 (266)
...++++|++|||||++|+++.... +.+|+.++|..+.. ..+...+.. ...++.||||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 4459999999999999999999876 47999999998843 333332211 2346889999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-C------CCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-S------CGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~------~~~~~ivi~ttn~~-------~~ 155 (266)
|++.+.. ..+..|+..++...- . ....+-+|+||+.. ..
T Consensus 240 ~i~~l~~---------------------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 240 EIGDMPL---------------------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred ccccCCH---------------------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 9998853 123344555442110 0 01234677777643 24
Q ss_pred CcccccCCCcce-eEEEcCCCCH--HHHHHHHHHhhCCC----C---CCcHHHHHHHhhcCC--CCHHHHHHHH
Q 024550 156 LDPALLRPGRMD-MHINMSHCTP--SGFKMLASNYLGIA----E---HPLFVEIEKLIATAK--VTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~~--~~~~~i~~~~~~~~----~---~~~~~~~~~l~~~~~--~s~~~i~~~l 217 (266)
+.+.|.. ||. ..|++|+... ++...|+.+|+... + ..+..+....+..+. .+..++.+++
T Consensus 293 ~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i 364 (469)
T PRK10923 293 FREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred chHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHH
Confidence 5566776 773 4455544333 33445666665322 1 123445544555444 5566766665
No 244
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.62 E-value=6.7e-07 Score=82.81 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=94.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH------------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA------------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~vl~iD 89 (266)
...+++.|.+||||+++++++.... +.+|+.++|..+.. ..+...+.. ...+++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 3459999999999999999998875 57899999998843 333322211 2347899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-------CCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-------SCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~~ivi~ttn~~-------~~ 155 (266)
|++.+.. .....|++.++.... .....+-+|+||+.. ..
T Consensus 236 ei~~l~~---------------------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 288 (463)
T TIGR01818 236 EIGDMPL---------------------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGK 288 (463)
T ss_pred chhhCCH---------------------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCC
Confidence 9998853 123445555542110 001235677777643 23
Q ss_pred CcccccCCCcce-eEEEcCCCC--HHHHHHHHHHhhCCC----C---CCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 156 LDPALLRPGRMD-MHINMSHCT--PSGFKMLASNYLGIA----E---HPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~--~~~~~~i~~~~~~~~----~---~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
+.+.|.. |+. ..|++|+.. .++...++.+|+... + ..+..+....+..+. .+.+++.+++.
T Consensus 289 f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~ 361 (463)
T TIGR01818 289 FREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCR 361 (463)
T ss_pred cHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 4445555 554 466666666 456666766665332 1 223444444444444 44567766663
No 245
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.62 E-value=3.1e-07 Score=87.39 Aligned_cols=28 Identities=54% Similarity=0.712 Sum_probs=25.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
+++++|+||||||||++++++++.++..
T Consensus 37 ~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 37 KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3589999999999999999999999654
No 246
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.57 E-value=2.6e-07 Score=87.21 Aligned_cols=119 Identities=22% Similarity=0.205 Sum_probs=84.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCC--cEEEEeCCc----ccChhhHHHHHHH-----------cccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKF--DVYDLELSN----LLGNNDLRHILIA-----------TENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~--~~~~i~~~~----~~~~~~l~~~~~~-----------~~~~~vl~iDeid~l 94 (266)
.|++|.|++|||||+++++++.-+.. ||+.+..+. +.+.-++...+.. ...++|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 47999999999999999999998754 777665443 3344444444322 234699999999966
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc---------cccCCCCceEEEEecCCC---CCCcccccC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG---------LWSSCGDERIIIFTTNHK---ERLDPALLR 162 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~ivi~ttn~~---~~ld~al~r 162 (266)
. ..+++.|++.|+. .....+.++++|+|.|.. ..|+++++.
T Consensus 106 ~---------------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 106 E---------------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred C---------------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 3 3466777777753 222223457788875432 458899999
Q ss_pred CCcceeEEEcCCCCHHH
Q 024550 163 PGRMDMHINMSHCTPSG 179 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~ 179 (266)
||+++|.++.|+..+
T Consensus 159 --Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 159 --RLAFHLDLDGLALRD 173 (584)
T ss_pred --heEEEEEcCCCChHH
Confidence 999999999988764
No 247
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.55 E-value=5.6e-08 Score=86.07 Aligned_cols=129 Identities=24% Similarity=0.281 Sum_probs=69.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC----ccc---------ChhhHHHHHHHcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS----NLL---------GNNDLRHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~----~~~---------~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
++||+|.||||||.+.+.++......++..... .++ ++..+..-..-...++|.+|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 599999999999999998877665554433211 111 0111111122234789999999998743
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhc---------cccCCCCceEEEEecCCCC-------------CCc
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG---------LWSSCGDERIIIFTTNHKE-------------RLD 157 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~~ivi~ttn~~~-------------~ld 157 (266)
.....++..|+. .....+.+.-|+|++|+.. .++
T Consensus 136 ------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~ 191 (331)
T PF00493_consen 136 ------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLP 191 (331)
T ss_dssp ------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-
T ss_pred ------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccc
Confidence 122334444442 1111123467899999654 478
Q ss_pred ccccCCCcceeEEEc-CCCCHHHHHHHHHHhhCC
Q 024550 158 PALLRPGRMDMHINM-SHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 158 ~al~r~~Rf~~~i~~-~~p~~~~~~~i~~~~~~~ 190 (266)
+.|++ ||+..+.+ ..|+.+.=..+..+.+..
T Consensus 192 ~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 192 PPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 89999 99987665 666655555555555544
No 248
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.54 E-value=5.6e-07 Score=81.52 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=49.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHH-------HH----------cccCCeeeeec
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHIL-------IA----------TENKSILVVED 90 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~-------~~----------~~~~~vl~iDe 90 (266)
...|||.|..||||..+|++|.... ..||+.+||+.+...--=.++| .. ...++.||+||
T Consensus 246 d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDE 325 (550)
T COG3604 246 DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDE 325 (550)
T ss_pred CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechh
Confidence 4569999999999999999999877 5799999999985321111222 21 23679999999
Q ss_pred chhhH
Q 024550 91 IDCCI 95 (266)
Q Consensus 91 id~l~ 95 (266)
|..|.
T Consensus 326 IGelP 330 (550)
T COG3604 326 IGELP 330 (550)
T ss_pred hccCC
Confidence 99885
No 249
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.54 E-value=6.1e-07 Score=90.52 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=94.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh-------------hh----HHHHHHHcccCCeeeeecchh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN-------------ND----LRHILIATENKSILVVEDIDC 93 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~-------------~~----l~~~~~~~~~~~vl~iDeid~ 93 (266)
.+++||-|.||+|||+++.++|+..|-.+++++.++-+.- .. =...+..++.+..+++||+..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 5679999999999999999999999999999998865420 00 113445567899999999984
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhh-----------ccccCCCCceEEEEecCCC------CCC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID-----------GLWSSCGDERIIIFTTNHK------ERL 156 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-----------~~~~~~~~~~ivi~ttn~~------~~l 156 (266)
.. +.++.+|-.+++ ... .+..+..|+||-|+. ..|
T Consensus 1623 aS---------------------------QSVlEGLNacLDhR~eayIPEld~~f-~~HpnfrVFAaqNPq~qggGRKgL 1674 (4600)
T COG5271 1623 AS---------------------------QSVLEGLNACLDHRREAYIPELDKTF-DVHPNFRVFAAQNPQDQGGGRKGL 1674 (4600)
T ss_pred hH---------------------------HHHHHHHHHHHhhcccccccccccee-eccCCeeeeeecCchhcCCCcccC
Confidence 42 223333333332 111 123456777777754 468
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE 192 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~ 192 (266)
|..|+. ||. +|.+...+.+....|...+++.-.
T Consensus 1675 PkSF~n--RFs-vV~~d~lt~dDi~~Ia~~~yp~v~ 1707 (4600)
T COG5271 1675 PKSFLN--RFS-VVKMDGLTTDDITHIANKMYPQVN 1707 (4600)
T ss_pred CHHHhh--hhh-eEEecccccchHHHHHHhhCCccC
Confidence 999999 995 599999999999999998887654
No 250
>PRK15115 response regulator GlrR; Provisional
Probab=98.51 E-value=1.7e-06 Score=79.66 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=48.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHH-HH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHI-LI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~-~~-----------------~~~~~~vl~iD 89 (266)
...++++|++|||||++|+++.... +.+|+.++|..+.. ..+... |. ....+++||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 3459999999999999999998875 47999999998743 333322 21 12346899999
Q ss_pred cchhhHH
Q 024550 90 DIDCCIE 96 (266)
Q Consensus 90 eid~l~~ 96 (266)
|++.|..
T Consensus 236 ~i~~l~~ 242 (444)
T PRK15115 236 EIGDMPA 242 (444)
T ss_pred ccccCCH
Confidence 9998854
No 251
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.51 E-value=2.7e-06 Score=77.88 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=36.1
Q ss_pred HHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 10 MDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+..+..||..-..+. .--..+-+||+||+||||||+++.+++++|..+++=+
T Consensus 91 I~eVk~WL~~~~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred HHHHHHHHHHHHHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 344677776221111 1112345889999999999999999999998887644
No 252
>PHA02624 large T antigen; Provisional
Probab=98.51 E-value=3.1e-07 Score=85.64 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
|+|..+.++||||||||||+++.+|++.++...+.++... ..++-.+.-+...-+.+|||+-.-+-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~------ 496 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKD------ 496 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccccccc------
Confidence 6677788999999999999999999999977777766332 234444445556778888888643210000
Q ss_pred cCCccccccccccccchhhhhhhhhhhhcccc----CCCC------ceEEEEecCCCCCCcccccCCCcceeEEEcC
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS----SCGD------ERIIIFTTNHKERLDPALLRPGRMDMHINMS 173 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~------~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~ 173 (266)
...+..-..+..+-+.|||.-. .... -.-.|.|||. ..||..+.- ||...+.|.
T Consensus 497 ----------Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 497 ----------LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ----------CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 0001222223455566666510 0000 0125567775 356888888 998888886
No 253
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.46 E-value=4.9e-07 Score=77.64 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=82.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCc------EEEEeCCcccChhh---HHHHHHHc---------ccCCeeeeecchhh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFD------VYDLELSNLLGNND---LRHILIAT---------ENKSILVVEDIDCC 94 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~------~~~i~~~~~~~~~~---l~~~~~~~---------~~~~vl~iDeid~l 94 (266)
+.|+|||||||||+...+.|..+..+ +...++++-.+..- -...|... .....+++||+|.+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 79999999999999999999988663 11223332222111 11222222 24578999999988
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~ 174 (266)
.. ..++.|-..+.... .+.-|+..+|++..+.+++.+ ||.. ..|..
T Consensus 144 T~---------------------------~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~p 189 (360)
T KOG0990|consen 144 TR---------------------------DAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCTR-FRFAP 189 (360)
T ss_pred hH---------------------------HHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--cccc-CCCCC
Confidence 53 12233334444432 346677788999999999999 8854 67777
Q ss_pred CCHHHHHHHHHHhhCCCCCC
Q 024550 175 CTPSGFKMLASNYLGIAEHP 194 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~ 194 (266)
.+..+......++...+...
T Consensus 190 l~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 190 LTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred CChhhhhhHHHHHHhcchhh
Confidence 77666666677666555433
No 254
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.46 E-value=4.7e-06 Score=72.04 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHH--cCCc---EEEEeCCcccChh------------------------hHHHHHHH-
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANY--LKFD---VYDLELSNLLGNN------------------------DLRHILIA- 79 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~--~~~~---~~~i~~~~~~~~~------------------------~l~~~~~~- 79 (266)
..+.+.|+|++|+|||++|+.++.. .... ++.++.....+.. .+...+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3556999999999999999999987 3221 2334333222111 11111111
Q ss_pred -cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc
Q 024550 80 -TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP 158 (266)
Q Consensus 80 -~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~ 158 (266)
...+++|+||+++... .+..+...+... ..+.-||.||....- -.
T Consensus 98 L~~~~~LlVlDdv~~~~-----------------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v-~~ 143 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE-----------------------------DLEELREPLPSF----SSGSKILVTTRDRSV-AG 143 (287)
T ss_dssp HCCTSEEEEEEEE-SHH-----------------------------HH-------HCH----HSS-EEEEEESCGGG-GT
T ss_pred hccccceeeeeeecccc-----------------------------cccccccccccc----ccccccccccccccc-cc
Confidence 1247899999998542 111222222111 123455667665321 11
Q ss_pred cccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC----CCcHHHHHHHhhcCCCCHHHHH
Q 024550 159 ALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE----HPLFVEIEKLIATAKVTPADVA 214 (266)
Q Consensus 159 al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~s~~~i~ 214 (266)
..- .-...++++..+.++..+++..+..... .........++...+..|-.|.
T Consensus 144 ~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 200 (287)
T PF00931_consen 144 SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALK 200 (287)
T ss_dssp THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHH
T ss_pred ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 1146799999999999999999876543 2222334455555555555543
No 255
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.41 E-value=6.9e-07 Score=87.28 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=98.6
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc--------------------ccCCeeeeecchh
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT--------------------ENKSILVVEDIDC 93 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~--------------------~~~~vl~iDeid~ 93 (266)
++++||||+|||+.+..+|.++|..+++.+.+...+...+...+..+ ....||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 68999999999999999999999999999999776543333332221 1235999999998
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMS 173 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~ 173 (266)
++. .++... ..+..+.. . ..+-+|+++|..+..+..-+. |-...++|+
T Consensus 440 ~~~-~dRg~v--------------------~~l~~l~~---k------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~ 487 (871)
T KOG1968|consen 440 MFG-EDRGGV--------------------SKLSSLCK---K------SSRPLVCTCNDRNLPKSRALS--RACSDLRFS 487 (871)
T ss_pred ccc-hhhhhH--------------------HHHHHHHH---h------ccCCeEEEecCCCCccccchh--hhcceeeec
Confidence 875 222221 12222333 1 235578888887776664444 444779999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHH
Q 024550 174 HCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 174 ~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~ 216 (266)
.|+.+++..-+..+.......+. ..+..+.. ++.+||.+.
T Consensus 488 kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~---~~~~DiR~~ 528 (871)
T KOG1968|consen 488 KPSSELIRSRIMSICKSEGIKISDDVLEEISK---LSGGDIRQI 528 (871)
T ss_pred CCcHHHHHhhhhhhhcccceecCcHHHHHHHH---hcccCHHHH
Confidence 99999988777767666554443 45555655 334444444
No 256
>PHA00729 NTP-binding motif containing protein
Probab=98.40 E-value=7.3e-07 Score=74.05 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=23.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
.+++|+|+||||||++|.+++..++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999998763
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.39 E-value=7.6e-06 Score=75.25 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=49.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHH------------------cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIA------------------TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~------------------~~~~~vl~iD 89 (266)
...++++|.+||||+++++++.... +.+|+.++|..+.. ..+...+.. ...+++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 3469999999999999999998765 47899999998743 333333211 2347899999
Q ss_pred cchhhHH
Q 024550 90 DIDCCIE 96 (266)
Q Consensus 90 eid~l~~ 96 (266)
||+.|..
T Consensus 241 ei~~l~~ 247 (441)
T PRK10365 241 EIGDISP 247 (441)
T ss_pred ccccCCH
Confidence 9999864
No 258
>PHA02774 E1; Provisional
Probab=98.38 E-value=3.6e-06 Score=78.31 Aligned_cols=58 Identities=28% Similarity=0.454 Sum_probs=42.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEE-EeCCcccChhhHHHHHHHcccCCeeeeecc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD-LELSNLLGNNDLRHILIATENKSILVVEDI 91 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~-i~~~~~~~~~~l~~~~~~~~~~~vl~iDei 91 (266)
++|..++++||||||||||+++.+|++.++..++. ++.... -.+..+....|+++||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~-------FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH-------FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc-------cccchhccCCEEEEecC
Confidence 56666789999999999999999999999765544 553211 11334445679999999
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=6.7e-06 Score=64.36 Aligned_cols=63 Identities=16% Similarity=0.371 Sum_probs=42.7
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC--------------------------hhhH------HHHHH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG--------------------------NNDL------RHILI 78 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~--------------------------~~~l------~~~~~ 78 (266)
++|+||||+|||+++..++... +.+++.++...... .... ...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 45666665542211 0001 11223
Q ss_pred HcccCCeeeeecchhhHH
Q 024550 79 ATENKSILVVEDIDCCIE 96 (266)
Q Consensus 79 ~~~~~~vl~iDeid~l~~ 96 (266)
....+.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 344678999999998865
No 260
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.36 E-value=1.4e-06 Score=81.31 Aligned_cols=129 Identities=24% Similarity=0.332 Sum_probs=76.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC----ccc----ChhhHHHHH-H----HcccCCeeeeecchhhHHHh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS----NLL----GNNDLRHIL-I----ATENKSILVVEDIDCCIELQ 98 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~----~~~----~~~~l~~~~-~----~~~~~~vl~iDeid~l~~~~ 98 (266)
-+|||+|.||||||-+.+.+++-+....|..--. .++ ....-.++. . -+..++|=+|||||.|-..
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dS- 541 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDS- 541 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHH-
Confidence 4699999999999999999999885554433211 111 001111111 1 1356889999999998421
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhh---------ccccCCCCceEEEEecCCC-----------C--CC
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID---------GLWSSCGDERIIIFTTNHK-----------E--RL 156 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~~ivi~ttn~~-----------~--~l 156 (266)
.-+-|+++|+ |...+.+.+.-|+|+.|+. + +|
T Consensus 542 --------------------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~L 595 (804)
T KOG0478|consen 542 --------------------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINL 595 (804)
T ss_pred --------------------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCC
Confidence 1122333333 2222223445688999953 2 36
Q ss_pred cccccCCCcceeE-EEcCCCCHHHHH----HHHHHhhC
Q 024550 157 DPALLRPGRMDMH-INMSHCTPSGFK----MLASNYLG 189 (266)
Q Consensus 157 d~al~r~~Rf~~~-i~~~~p~~~~~~----~i~~~~~~ 189 (266)
+|.|++ ||+.+ +-+..||...=+ .|...|+.
T Consensus 596 pptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e 631 (804)
T KOG0478|consen 596 PPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPE 631 (804)
T ss_pred Chhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhccc
Confidence 899999 99965 455777776333 44454554
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.36 E-value=4.4e-07 Score=68.17 Aligned_cols=30 Identities=40% Similarity=0.793 Sum_probs=27.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
|+|.|||||||||+++.||..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877665
No 262
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.33 E-value=3.6e-06 Score=84.51 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=90.6
Q ss_pred CCCCceeEEecCCCCChHHH-HHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc-----------------cCCeeeee
Q 024550 28 KAWKRGYLLYGPPGTGKSSL-IAAMANYLKFDVYDLELSNLLGNNDLRHILIATE-----------------NKSILVVE 89 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~l-a~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-----------------~~~vl~iD 89 (266)
+...++++++||||+|||++ .-++-++.-..++.++.+.-+.....-..+.... ...|||.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 34467999999999999985 5578888888999999887765554444444321 24799999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhh---hhhccccCCC------CceEEEEecCCCCC-----
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLN---FIDGLWSSCG------DERIIIFTTNHKER----- 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~l~~~~~~~~------~~~ivi~ttn~~~~----- 155 (266)
||+ |..... ......--++. +-.|+|.+.. .++++.+++|++..
T Consensus 1571 eIn-Lp~~~~---------------------y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~ 1628 (3164)
T COG5245 1571 EIN-LPYGFE---------------------YYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVK 1628 (3164)
T ss_pred ccC-Cccccc---------------------cCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCc
Confidence 999 432110 00111111221 1123443322 35788999998754
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCC
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIA 191 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~ 191 (266)
++..|+| | ...+.+..|.-.....|+..++...
T Consensus 1629 ~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1629 YYERFIR--K-PVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred cHHHHhc--C-ceEEEecCcchhhHHHHHHHHHHHH
Confidence 3466665 4 4668889999999999988777543
No 263
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=98.29 E-value=2.6e-06 Score=69.80 Aligned_cols=113 Identities=20% Similarity=0.291 Sum_probs=65.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
|......++|.|+-|+|||++.+.|+.+. +.-+.... ... +........-++.+||++.+....
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~-~~k---d~~~~l~~~~iveldEl~~~~k~~-------- 111 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF-DDK---DFLEQLQGKWIVELDELDGLSKKD-------- 111 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC-CCc---HHHHHHHHhHheeHHHHhhcchhh--------
Confidence 44444558899999999999999996662 21111222 111 233344556888999999874211
Q ss_pred cCCccccccccccccchhhhhhhhhh-hhccc-------cCCCCceEEEEecCCCCCC-cccccCCCcceeEEEcCC
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNF-IDGLW-------SSCGDERIIIFTTNHKERL-DPALLRPGRMDMHINMSH 174 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~-------~~~~~~~ivi~ttn~~~~l-d~al~r~~Rf~~~i~~~~ 174 (266)
...+..++.. .+... ...+...++|+|||..+-| |+.--| || ..|++..
T Consensus 112 ----------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 112 ----------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ----------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1111122211 11111 1112346899999998766 466678 88 6677765
No 264
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.26 E-value=4.6e-05 Score=68.58 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=61.7
Q ss_pred eEEEEecC--CCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC---------------------CCcHHHHH
Q 024550 144 RIIIFTTN--HKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE---------------------HPLFVEIE 200 (266)
Q Consensus 144 ~ivi~ttn--~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~---------------------~~~~~~~~ 200 (266)
.+|+.|++ ....|..+|-. |.-..|.+...+.+..++.+...+.... .....+++
T Consensus 185 HVIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld 262 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELD 262 (431)
T ss_pred EEEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHH
Confidence 34444444 22455666655 6667899999999999988888886541 12456777
Q ss_pred HHhhcCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Q 024550 201 KLIATAKVTPADVAEQLMR---NEAPEFALSGLIEFLES 236 (266)
Q Consensus 201 ~l~~~~~~s~~~i~~~l~~---~~~~~~~~~~~~~~~~~ 236 (266)
..+...|.-.-|+..+..+ .+.+..|++.++.--..
T Consensus 263 ~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa~ 301 (431)
T PF10443_consen 263 ECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSAS 301 (431)
T ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7778788777777655543 67888888887654433
No 265
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.24 E-value=1.3e-06 Score=69.69 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=30.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+++..++|+||||||||++++.+|..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35668999999999999999999999999888544
No 266
>PF14516 AAA_35: AAA-like domain
Probab=98.22 E-value=4.1e-05 Score=67.93 Aligned_cols=135 Identities=15% Similarity=0.186 Sum_probs=80.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-----h--------------------------------
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-----N-------------------------------- 70 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-----~-------------------------------- 70 (266)
+.-+.++||..+|||++...+...+ |...+.+++..+.. .
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4568999999999999998887665 67778888776431 0
Q ss_pred hhHHHHH-----HHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC----
Q 024550 71 NDLRHIL-----IATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG---- 141 (266)
Q Consensus 71 ~~l~~~~-----~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~---- 141 (266)
......| .....|-||+|||+|.++.. ......++..+..++....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~-------------------------~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY-------------------------PQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC-------------------------cchHHHHHHHHHHHHHhcccCcc
Confidence 0111111 12246889999999998641 1122334444433332211
Q ss_pred -Cce-EEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 142 -DER-IIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 142 -~~~-ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
... ++++.+..+......-.+|..++..|.++..+.++...++..+-..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~ 216 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE 216 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc
Confidence 122 2222222222211122355566778999999999999998877543
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.21 E-value=4.2e-05 Score=69.00 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=39.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
..++++.||+|||||+++.+++... | ..++++.+...- ....+.......+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCCc
Confidence 4579999999999999999988772 3 112222221110 11333445568999999999864
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.21 E-value=1.1e-05 Score=66.68 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=33.5
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
|++...-++++||||||||+++..++... +.+.++++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777789999999999999999888654 66788888865
No 269
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.17 E-value=2.3e-05 Score=64.23 Aligned_cols=64 Identities=30% Similarity=0.433 Sum_probs=38.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC----------hhhHHHHHHH-----------cccCCeee
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG----------NNDLRHILIA-----------TENKSILV 87 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~----------~~~l~~~~~~-----------~~~~~vl~ 87 (266)
+..++.||||||||++++.+...+ +..++.+.+..-.. ...+..++.. .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 458889999999999999887665 55666665543211 1112222211 12347999
Q ss_pred eecchhhH
Q 024550 88 VEDIDCCI 95 (266)
Q Consensus 88 iDeid~l~ 95 (266)
+||+..+.
T Consensus 99 VDEasmv~ 106 (196)
T PF13604_consen 99 VDEASMVD 106 (196)
T ss_dssp ESSGGG-B
T ss_pred EecccccC
Confidence 99999764
No 270
>PRK07261 topology modulation protein; Provisional
Probab=98.17 E-value=5.1e-06 Score=66.64 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
-++++|+||+||||+++.++..++.+++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 37899999999999999999999988776653
No 271
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.16 E-value=4.5e-06 Score=71.24 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHH------HcCCcEEEEeCCcccChhhHHHHHHHc-----------------ccC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMAN------YLKFDVYDLELSNLLGNNDLRHILIAT-----------------ENK 83 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~------~~~~~~~~i~~~~~~~~~~l~~~~~~~-----------------~~~ 83 (266)
.+.....+||.||.|.|||.+++.+.. .+..+|++++|..+.+...+..+|... ..+
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 445556699999999999999998863 557899999999998776666666432 357
Q ss_pred CeeeeecchhhHH
Q 024550 84 SILVVEDIDCCIE 96 (266)
Q Consensus 84 ~vl~iDeid~l~~ 96 (266)
++||+|||..+..
T Consensus 284 gmlfldeigelga 296 (531)
T COG4650 284 GMLFLDEIGELGA 296 (531)
T ss_pred ceEehHhhhhcCc
Confidence 9999999998865
No 272
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.15 E-value=4.3e-06 Score=65.79 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+-.+++.||+|||||++.+.+|.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3349999999999999999999855
No 273
>PRK08118 topology modulation protein; Reviewed
Probab=98.15 E-value=1.9e-06 Score=68.79 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=29.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
.|+++||||+||||+++.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887773
No 274
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=3.5e-05 Score=69.99 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc-ChhhHHHHH---HHcc--cCCeeeeecchhhHH
Q 024550 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL-GNNDLRHIL---IATE--NKSILVVEDIDCCIE 96 (266)
Q Consensus 23 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~-~~~~l~~~~---~~~~--~~~vl~iDeid~l~~ 96 (266)
.......++ .++++||.+|||||+++.+.....-.++.++..+.. ....+.+.+ .... ....+|||||+.+-
T Consensus 30 ~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~- 107 (398)
T COG1373 30 IKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP- 107 (398)
T ss_pred HhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCch-
Confidence 333344444 799999999999999998888886555555554443 222232222 2222 35899999999763
Q ss_pred HhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC-cccccCCCcceeEEEcCCC
Q 024550 97 LQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL-DPALLRPGRMDMHINMSHC 175 (266)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l-d~al~r~~Rf~~~i~~~~p 175 (266)
.+...+..+.+. ... -++|.+++..-.. ..+-.-+||. ..+++.+.
T Consensus 108 ------------------------~W~~~lk~l~d~-------~~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~Pl 154 (398)
T COG1373 108 ------------------------DWERALKYLYDR-------GNL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPL 154 (398)
T ss_pred ------------------------hHHHHHHHHHcc-------ccc-eEEEECCchhhhccchhhhcCCCc-eeEEECCC
Confidence 223333333322 111 3455555443222 2233335684 77899999
Q ss_pred CHHHHHH
Q 024550 176 TPSGFKM 182 (266)
Q Consensus 176 ~~~~~~~ 182 (266)
+..+...
T Consensus 155 SF~Efl~ 161 (398)
T COG1373 155 SFREFLK 161 (398)
T ss_pred CHHHHHh
Confidence 9988854
No 275
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.12 E-value=2.1e-05 Score=71.91 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=29.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
.|..++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35669999999999999999999877 555666665544
No 276
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.12 E-value=8.3e-06 Score=66.68 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=57.9
Q ss_pred eEEecCCCCChHHHHHHH-HHHc---CCcEEEEeCCccc-----C--hh------------------hHHHHHHHcccCC
Q 024550 34 YLLYGPPGTGKSSLIAAM-ANYL---KFDVYDLELSNLL-----G--NN------------------DLRHILIATENKS 84 (266)
Q Consensus 34 iLl~GppGtGKT~la~al-a~~~---~~~~~~i~~~~~~-----~--~~------------------~l~~~~~~~~~~~ 84 (266)
.+++|.||+|||+.|-.. .... |.+++. +...+. . .. .....+.....++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999876554 3322 565554 444222 0 00 0111122233689
Q ss_pred eeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCC
Q 024550 85 ILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPG 164 (266)
Q Consensus 85 vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~ 164 (266)
+++|||+...++.+..... .....++.+... ...+.-||.+|-.+..+|+.+++
T Consensus 82 liviDEa~~~~~~r~~~~~---------------------~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~-- 135 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK---------------------KVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD-- 135 (193)
T ss_dssp EEEETTGGGTSB---T-T-------------------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC--
T ss_pred EEEEECChhhcCCCccccc---------------------cchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH--
Confidence 9999999998763332100 011222333222 22467899999999999999987
Q ss_pred cceeEEEcCCC
Q 024550 165 RMDMHINMSHC 175 (266)
Q Consensus 165 Rf~~~i~~~~p 175 (266)
..+.++.+..+
T Consensus 136 lve~~~~~~k~ 146 (193)
T PF05707_consen 136 LVEYHYHCRKL 146 (193)
T ss_dssp CEEEEEEEEE-
T ss_pred HHheEEEEEee
Confidence 88887777654
No 277
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.5e-05 Score=62.39 Aligned_cols=128 Identities=10% Similarity=0.085 Sum_probs=92.3
Q ss_pred CceeEEecCCC-CChHHHHHHHHHHcC---------CcEEEEeCCc-------ccChhhHHHHHHHcc------cCCeee
Q 024550 31 KRGYLLYGPPG-TGKSSLIAAMANYLK---------FDVYDLELSN-------LLGNNDLRHILIATE------NKSILV 87 (266)
Q Consensus 31 ~~~iLl~GppG-tGKT~la~ala~~~~---------~~~~~i~~~~-------~~~~~~l~~~~~~~~------~~~vl~ 87 (266)
.+.+||.|..+ +||..++..++..+. -.++.+.... ..+-..++++..... ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45799999998 999999888887662 3344554331 123344555444321 357999
Q ss_pred eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcce
Q 024550 88 VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMD 167 (266)
Q Consensus 88 iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~ 167 (266)
|+++|.|. ....+.||..++. ++...++|..|..+..+.+.+++ ||
T Consensus 95 I~~ae~mt---------------------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC- 140 (263)
T PRK06581 95 IYSAELMN---------------------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC- 140 (263)
T ss_pred EechHHhC---------------------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-
Confidence 99999874 2345667777664 45678888889899999999999 98
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCC
Q 024550 168 MHINMSHCTPSGFKMLASNYLGIAE 192 (266)
Q Consensus 168 ~~i~~~~p~~~~~~~i~~~~~~~~~ 192 (266)
..+.|+.|....-.+++..++....
T Consensus 141 q~i~~~~p~~~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 141 FKINVRSSILHAYNELYSQFIQPIA 165 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHhccccc
Confidence 6699999999888888877776543
No 278
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.10 E-value=7.4e-06 Score=71.94 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 1 MDFDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 1 l~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
|+++.++.+...+..++..... +.+...|+|+|+||||||++++.+|..+|.+++.++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~-----~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRR-----AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhh-----ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3555555555555554444332 445667999999999999999999999999998543
No 279
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.10 E-value=8.7e-06 Score=77.66 Aligned_cols=26 Identities=50% Similarity=0.773 Sum_probs=23.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++.++|+||||||||+++++++..+.
T Consensus 50 ~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 50 RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35799999999999999999998875
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=2.1e-05 Score=70.92 Aligned_cols=25 Identities=44% Similarity=0.773 Sum_probs=21.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..++|+||+|+||||++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998765
No 281
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.06 E-value=4.6e-05 Score=65.25 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=39.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCC-----cEEE--EeCCcccChhhH-------HHHHH---HcccCCeeeeecchhhHH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKF-----DVYD--LELSNLLGNNDL-------RHILI---ATENKSILVVEDIDCCIE 96 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~-----~~~~--i~~~~~~~~~~l-------~~~~~---~~~~~~vl~iDeid~l~~ 96 (266)
+=|+|++||||+++++.+|+.+.. +++. +....+...+.+ ...+. ...+.+++++||+|.|.+
T Consensus 113 LSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred EEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 458999999999999999998832 2221 111222222222 11111 135689999999998853
No 282
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=4.9e-05 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...++++|+||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4469999999999999999999877
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=1.6e-05 Score=71.22 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=42.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----C-CcEEEEeCCccc----------------------ChhhHHHHHHHcccC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----K-FDVYDLELSNLL----------------------GNNDLRHILIATENK 83 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~-~~~~~i~~~~~~----------------------~~~~l~~~~~~~~~~ 83 (266)
+..++|+||+|+||||++..||..+ | ..+..+....+. +...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4469999999999999999999764 3 234444433321 123344455556677
Q ss_pred Ceeeeecchhh
Q 024550 84 SILVVEDIDCC 94 (266)
Q Consensus 84 ~vl~iDeid~l 94 (266)
.+++||.....
T Consensus 217 DlVLIDTaG~~ 227 (374)
T PRK14722 217 HMVLIDTIGMS 227 (374)
T ss_pred CEEEEcCCCCC
Confidence 88999988743
No 284
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.05 E-value=5.2e-06 Score=69.01 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=38.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCc--cc--------------ChhhHHHHHHH----cccCCeeeeec
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSN--LL--------------GNNDLRHILIA----TENKSILVVED 90 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~--~~--------------~~~~l~~~~~~----~~~~~vl~iDe 90 (266)
+..+||||+||+|||++|+.++... -++..+.+. +. .-..+.+.+.. .....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~--~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKT--LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCC--EEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 4569999999999999999987421 122222211 00 11223233322 23468999999
Q ss_pred chhhHH
Q 024550 91 IDCCIE 96 (266)
Q Consensus 91 id~l~~ 96 (266)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 999854
No 285
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.04 E-value=3.1e-05 Score=61.99 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=45.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChh-----------------------hHHHHHHH-cccCCeeee
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNN-----------------------DLRHILIA-TENKSILVV 88 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~-----------------------~l~~~~~~-~~~~~vl~i 88 (266)
.+|+.||||+|||++|..++..++.+.+++......... .+...+.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 489999999999999999999988887777765543221 23444444 344667888
Q ss_pred ecchhhHH
Q 024550 89 EDIDCCIE 96 (266)
Q Consensus 89 Deid~l~~ 96 (266)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 88877653
No 286
>PRK13947 shikimate kinase; Provisional
Probab=98.04 E-value=4.9e-06 Score=66.42 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=28.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+|+|.|+||||||++++.+|+.+|.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998766
No 287
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.04 E-value=1.5e-05 Score=70.57 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.4
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+|+|++|||.-|||||+|.-.+...+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 358999999999999999998877555
No 288
>PRK03839 putative kinase; Provisional
Probab=98.03 E-value=4.8e-06 Score=67.19 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=27.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999999887654
No 289
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.03 E-value=4.7e-06 Score=64.33 Aligned_cols=26 Identities=46% Similarity=0.724 Sum_probs=23.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
++++|||||||||+++.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 68999999999999999999998333
No 290
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.03 E-value=3.6e-05 Score=67.83 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL 68 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~ 68 (266)
.|..+.|||-.|||||++++.+-+.++.+.+.+++-+..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF 67 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc
Confidence 466789999999999999999999999999998877654
No 291
>PRK00625 shikimate kinase; Provisional
Probab=98.02 E-value=5.6e-06 Score=66.48 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=28.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|+|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998776
No 292
>PRK05973 replicative DNA helicase; Provisional
Probab=98.01 E-value=4.4e-05 Score=64.25 Aligned_cols=39 Identities=23% Similarity=0.016 Sum_probs=30.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|+++...+++.|+||+|||+++-.++... |.+.+++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67677779999999999999888776644 6666666544
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.7e-05 Score=76.08 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=84.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC--------hhhHHHHHHH---cccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG--------NNDLRHILIA---TENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~---~~~~~vl~iD 89 (266)
+++.+|+|.||+|||.++.-+|... +..++.++...+.. +..+..+... ...+.|||||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4689999999999999999999866 45666777665543 2334555544 3367899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-----CCCcccccCCC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-----ERLDPALLRPG 164 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-----~~ld~al~r~~ 164 (266)
|++.+.+..... . .....+.+...... .+..+|+||..- ..-+|+|-+
T Consensus 288 elh~lvg~g~~~------------------~-----~~d~~nlLkp~L~r--g~l~~IGatT~e~Y~k~iekdPalEr-- 340 (898)
T KOG1051|consen 288 ELHWLVGSGSNY------------------G-----AIDAANLLKPLLAR--GGLWCIGATTLETYRKCIEKDPALER-- 340 (898)
T ss_pred ceeeeecCCCcc------------------h-----HHHHHHhhHHHHhc--CCeEEEecccHHHHHHHHhhCcchhh--
Confidence 999986522110 0 11222333322222 337888877632 223899999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhh
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
||.. +.++.|+.+....|+...-
T Consensus 341 rw~l-~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 341 RWQL-VLVPIPSVENLSLILPGLS 363 (898)
T ss_pred Ccce-eEeccCcccchhhhhhhhh
Confidence 9965 7899999877555554433
No 294
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.99 E-value=9.2e-05 Score=65.23 Aligned_cols=30 Identities=37% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
..+..|-|+|+-|+|||++++.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456779999999999999999998887444
No 295
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.99 E-value=6e-06 Score=63.47 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=33.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHI 76 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~ 76 (266)
..+||++|-|||||||++..+|..++.+.+.++ ++..+.++..-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is--d~vkEn~l~~g 50 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS--DLVKENNLYEG 50 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh--hHHhhhcchhc
Confidence 347999999999999999999999988766554 44444444333
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.99 E-value=7e-06 Score=64.17 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=27.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+|+|+||||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999887655
No 297
>PRK13949 shikimate kinase; Provisional
Probab=97.98 E-value=7e-06 Score=65.68 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=28.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|+||||+|||++++.+|..++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999887765
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.97 E-value=4.5e-05 Score=77.77 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=106.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhH----------------HHHHHHcccCCeeeeecchhhHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDL----------------RHILIATENKSILVVEDIDCCIE 96 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l----------------~~~~~~~~~~~vl~iDeid~l~~ 96 (266)
.+|+-||..+|||+.+..+|...|..|++++-...+.-... ..+.....++-.+++||+...+.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApT 969 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPT 969 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcH
Confidence 49999999999999999999999999999997766521111 12223445678999999985432
Q ss_pred HhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC-------CCCceEEEEecCCCC------CCcccccCC
Q 024550 97 LQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-------CGDERIIIFTTNHKE------RLDPALLRP 163 (266)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~ivi~ttn~~~------~ld~al~r~ 163 (266)
..-..++.||.--..+.-+ +.....++||-|+|. .|..||+.
T Consensus 970 ------------------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN- 1024 (4600)
T COG5271 970 ------------------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN- 1024 (4600)
T ss_pred ------------------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh-
Confidence 2223334444322222111 123456778888874 46788888
Q ss_pred CcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 024550 164 GRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQLMRNEAPEFALSGLIEFLESK 237 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 237 (266)
|| ..++|..-..++...|+...-... ...+..+.+... +++.+.-.+.+.-..+.-..++++..|.-+.
T Consensus 1025 -RF-lE~hFddipedEle~ILh~rc~ia-pSyakKiVeVyr--~Ls~rRs~~rifeqknsfaTLRDLFrWa~R~ 1093 (4600)
T COG5271 1025 -RF-LEMHFDDIPEDELEEILHGRCEIA-PSYAKKIVEVYR--GLSSRRSINRIFEQKNSFATLRDLFRWAGRI 1093 (4600)
T ss_pred -hh-HhhhcccCcHHHHHHHHhccCccC-HHHHHHHHHHHH--HhhhhhhHHHHHHhhhhHHHHHHHHHHhccc
Confidence 99 668888888888888776433221 112222322222 2444444444444445666677777775443
No 299
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.97 E-value=6.1e-05 Score=63.41 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++.+..++++||||||||+++..++... |.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 78888889999999999999999987543 5566666553
No 300
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.96 E-value=1.4e-05 Score=63.88 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|+|+||+||||+++.+...+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999887
No 301
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=0.00021 Score=73.49 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
..+-+-|+||+|+||||+|+++++.+..
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 3455889999999999999999887743
No 302
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.96 E-value=6.9e-06 Score=65.22 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=29.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+++|+|++|+||||+.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998776
No 303
>PRK14532 adenylate kinase; Provisional
Probab=97.95 E-value=8.5e-06 Score=66.16 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.++|.||||+||||+++.+|+.+|..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998766543
No 304
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.95 E-value=1.2e-05 Score=74.90 Aligned_cols=129 Identities=18% Similarity=0.310 Sum_probs=80.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC----ccc----ChhhHHHHHH-----HcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS----NLL----GNNDLRHILI-----ATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~----~~~----~~~~l~~~~~-----~~~~~~vl~iDeid~l~~~~~ 99 (266)
+|+++|.||||||-+.++.+.-+...+|..--+ .++ ....-.+... ....++|=+|||||.+...
T Consensus 380 nv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-- 457 (764)
T KOG0480|consen 380 NVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-- 457 (764)
T ss_pred eEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--
Confidence 499999999999999999999887776654322 121 0011111111 1246899999999988430
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhh---------ccccCCCCceEEEEecCCCC-------------CCc
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID---------GLWSSCGDERIIIFTTNHKE-------------RLD 157 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~~ivi~ttn~~~-------------~ld 157 (266)
-.-.++..|+ |...+.+.+.-|||++|+.. ++.
T Consensus 458 -------------------------dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~ms 512 (764)
T KOG0480|consen 458 -------------------------DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMS 512 (764)
T ss_pred -------------------------hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCC
Confidence 0112334443 22222223445888888642 367
Q ss_pred ccccCCCccee-EEEcCCCCHHHHHHHHHHhhCC
Q 024550 158 PALLRPGRMDM-HINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 158 ~al~r~~Rf~~-~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
+++++ ||+. .|-+..|++..=..|-++.+..
T Consensus 513 ApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 513 APIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred chhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 89999 9994 4777889887766666655544
No 305
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.94 E-value=8.8e-06 Score=65.69 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=24.5
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
++++||||+||||+++.+|..+|...+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999865443
No 306
>PF13479 AAA_24: AAA domain
Probab=97.94 E-value=2.7e-05 Score=64.66 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=37.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc---------------cChhhHHHHHHH----cccCCeeeeecc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL---------------LGNNDLRHILIA----TENKSILVVEDI 91 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~---------------~~~~~l~~~~~~----~~~~~vl~iDei 91 (266)
+-.++||||||+|||+++..+ +-+ +.+++..- .+-..+.+.+.. ...--+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~-l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKP-LFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCe-EEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346999999999999999887 222 22222111 122334444432 235689999998
Q ss_pred hhhHH
Q 024550 92 DCCIE 96 (266)
Q Consensus 92 d~l~~ 96 (266)
+.+..
T Consensus 78 s~~~~ 82 (213)
T PF13479_consen 78 SWLED 82 (213)
T ss_pred HHHHH
Confidence 88744
No 307
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.94 E-value=6.8e-06 Score=78.23 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=41.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe----CCcccCh---hhH-HHHHHH-----cccCCeeeeecchhhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLLGN---NDL-RHILIA-----TENKSILVVEDIDCCI 95 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~----~~~~~~~---~~l-~~~~~~-----~~~~~vl~iDeid~l~ 95 (266)
++||.|-||||||.|.+.+++-+...++..- ...++.. ... .++... ...++|.+|||+|.+-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 5999999999999999999998876655432 2222210 001 111111 2468999999999773
No 308
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.93 E-value=0.00019 Score=64.29 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+++||||+|||+|++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998763
No 309
>PRK13948 shikimate kinase; Provisional
Probab=97.92 E-value=1.3e-05 Score=64.86 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+++..|+|.|++|||||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999998666
No 310
>PRK14531 adenylate kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=65.18 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=27.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..++++||||+||||+++.+|..+|.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4599999999999999999999998876543
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.91 E-value=6.3e-05 Score=65.20 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=27.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----C-CcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----K-FDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~-~~~~~i~~~~ 66 (266)
+..++|+||+|+||||++..+|..+ | ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3458899999999999999998766 3 4555666554
No 312
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.91 E-value=5.4e-05 Score=68.01 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc--------------------ChhhHHHHHHH--cc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL--------------------GNNDLRHILIA--TE 81 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~--------------------~~~~l~~~~~~--~~ 81 (266)
|+++..-++|+||||+|||+++..+|... +.++++++..... ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57777779999999999999999888765 3567777654321 01122223222 23
Q ss_pred cCCeeeeecchhhH
Q 024550 82 NKSILVVEDIDCCI 95 (266)
Q Consensus 82 ~~~vl~iDeid~l~ 95 (266)
++.+|+||++..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999998875
No 313
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=4.3e-05 Score=67.05 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=45.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC------------------hhhHH---HHH---HH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG------------------NNDLR---HIL---IA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~------------------~~~l~---~~~---~~ 79 (266)
|++..+.++++||||||||+|+..++... |.+.+.+++..... ..... ... ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 57777779999999999999988766544 56666666543221 01111 111 11
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
.....+++||-+..+.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 23578899999998864
No 314
>PRK06217 hypothetical protein; Validated
Probab=97.91 E-value=1.2e-05 Score=65.22 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=28.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|.|+||+||||+++.|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876655
No 315
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.90 E-value=0.00017 Score=63.33 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=93.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHH------------HcccCCeeeeecchhhHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILI------------ATENKSILVVEDIDCCIEL 97 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~------------~~~~~~vl~iDeid~l~~~ 97 (266)
.+|+.|..||||-.+|+++.... ..||+.++|+.+.....=.++|. ....++.+|+|||..+.+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp- 307 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP- 307 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH-
Confidence 48999999999999999988766 68999999999875433334443 334578899999998753
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhh-ccccCCCC------ceEEEEecCCC-------CCCcccccCC
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFID-GLWSSCGD------ERIIIFTTNHK-------ERLDPALLRP 163 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~~~~------~~ivi~ttn~~-------~~ld~al~r~ 163 (266)
..+..+|..+. +...+.+. .+-||+||..+ ..+-..|.-
T Consensus 308 --------------------------~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy- 360 (511)
T COG3283 308 --------------------------RLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY- 360 (511)
T ss_pred --------------------------HHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH-
Confidence 23344555553 33222222 36788888653 222333443
Q ss_pred CcceeEEEcCCCCHHHH----HHHHHHhhC-------CCCCCcHHHHHHHhhcCC--CCHHHHHHHHH
Q 024550 164 GRMDMHINMSHCTPSGF----KMLASNYLG-------IAEHPLFVEIEKLIATAK--VTPADVAEQLM 218 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~----~~i~~~~~~-------~~~~~~~~~~~~l~~~~~--~s~~~i~~~l~ 218 (266)
|+. ++.+..|.-.+| .-+.+.|+. .....+..++......+. .+.+++.|.+.
T Consensus 361 -RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iy 426 (511)
T COG3283 361 -RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIY 426 (511)
T ss_pred -Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHH
Confidence 553 355555554433 223333332 223344455555555554 56677777764
No 316
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.90 E-value=1.2e-05 Score=62.75 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.8
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
++|+|+||+||||+++.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876553
No 317
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.90 E-value=7.1e-05 Score=65.09 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=77.7
Q ss_pred CCceeEEecCCCCChHHHHHH-H--HHHcCCcEEEEeCCcccCh---------------------------hhHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAA-M--ANYLKFDVYDLELSNLLGN---------------------------NDLRHILIA 79 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~a-l--a~~~~~~~~~i~~~~~~~~---------------------------~~l~~~~~~ 79 (266)
...++++.||.|+|||++... + +.+.|-+++.+........ ..+..++..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHH
Confidence 466799999999999986543 3 3367888888776654421 111222221
Q ss_pred c------ccCCeee-eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC
Q 024550 80 T------ENKSILV-VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH 152 (266)
Q Consensus 80 ~------~~~~vl~-iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~ 152 (266)
. +...|+| +||||..++ .... .-+.|.+|- ......++.+|+.|.+
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~------------------------h~rQ--tllYnlfDi-sqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 128 LKKGDETTSGKVIFILDEFDLFAP------------------------HSRQ--TLLYNLFDI-SQSARAPICIIGVTTR 180 (408)
T ss_pred HhcCCCCCCceEEEEeehhhcccc------------------------chhh--HHHHHHHHH-HhhcCCCeEEEEeecc
Confidence 1 1223555 678997653 1111 112333332 2222356888887776
Q ss_pred CC---CCcccccCCCcceeE-EEcCC-CCHHHHHHHHHHhhCC
Q 024550 153 KE---RLDPALLRPGRMDMH-INMSH-CTPSGFKMLASNYLGI 190 (266)
Q Consensus 153 ~~---~ld~al~r~~Rf~~~-i~~~~-p~~~~~~~i~~~~~~~ 190 (266)
.+ .|.....+ ||... |+|+. ...++...+++..+..
T Consensus 181 ld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 181 LDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred ccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcC
Confidence 54 45577788 88854 66644 4457778888877743
No 318
>PTZ00202 tuzin; Provisional
Probab=97.88 E-value=0.00066 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
.+.-+.|.||+|||||++++.+...++.+.+.++..
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 345678999999999999999999998777777766
No 319
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.87 E-value=1.2e-05 Score=64.65 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+.++|.||||+||||+++.++..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 468999999999999999999999877665543
No 320
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.86 E-value=1.4e-05 Score=64.96 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.8
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|+|+||||+|||++++.||..+|..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998766553
No 321
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.86 E-value=0.00014 Score=58.19 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=44.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh-----------------------hhHHHHHHHcccCCeeeeec
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN-----------------------NDLRHILIATENKSILVVED 90 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~-----------------------~~l~~~~~~~~~~~vl~iDe 90 (266)
+|++||+|+|||++|..++...+.+.+++....-.+. ..+...+...+.+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999887777877765543321 22333343333456788888
Q ss_pred chhhHH
Q 024550 91 IDCCIE 96 (266)
Q Consensus 91 id~l~~ 96 (266)
+..+..
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 876653
No 322
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.86 E-value=6.8e-05 Score=69.12 Aligned_cols=70 Identities=26% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC--------------------hhhHHHHHHHc--c
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG--------------------NNDLRHILIAT--E 81 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~--------------------~~~l~~~~~~~--~ 81 (266)
|+++..-++|+||||+|||+++..++... +.++++++...... ...+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777779999999999999999998765 56777777543211 11222332222 2
Q ss_pred cCCeeeeecchhhHH
Q 024550 82 NKSILVVEDIDCCIE 96 (266)
Q Consensus 82 ~~~vl~iDeid~l~~ 96 (266)
.+.+++||.+..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 578899999987753
No 323
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.85 E-value=1.6e-05 Score=61.53 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=27.8
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
|.+.|+||||||++++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999987776
No 324
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.84 E-value=1.5e-05 Score=63.13 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.0
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
++++|||||||||+++.++..++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 325
>PRK14530 adenylate kinase; Provisional
Probab=97.84 E-value=1.9e-05 Score=65.69 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|+|.||||+||||+++.||..++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999876644
No 326
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.6e-05 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=26.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|-+.|||||||||+++.+|..+|.+++..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa 31 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA 31 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeec
Confidence 56789999999999999999999998763
No 327
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.83 E-value=0.00039 Score=62.08 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
..+|+||||||||++++.+++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998877
No 328
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.83 E-value=0.00047 Score=69.06 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=89.2
Q ss_pred hhCHHHHHHhCC-CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh-------------------------
Q 024550 17 LQRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN------------------------- 70 (266)
Q Consensus 17 l~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~------------------------- 70 (266)
+.++.+...+.- ...+-++|+||+|.|||+++...+...+ ++..+++..-.+.
T Consensus 17 ~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~ 95 (903)
T PRK04841 17 VVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEA 95 (903)
T ss_pred CcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhh
Confidence 445555555432 2334599999999999999999887776 5655555322100
Q ss_pred -------hh----HHHHHHH---cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc
Q 024550 71 -------ND----LRHILIA---TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL 136 (266)
Q Consensus 71 -------~~----l~~~~~~---~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 136 (266)
.. +..++.. ...+.+|+|||++.+.. ......+..++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~-----------------------~~~~~~l~~l~~~~--- 149 (903)
T PRK04841 96 LAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITN-----------------------PEIHEAMRFFLRHQ--- 149 (903)
T ss_pred hhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCC-----------------------hHHHHHHHHHHHhC---
Confidence 00 1111221 24578999999997632 11122333333332
Q ss_pred ccCCCCceEEEEecCCCCCCc-ccccCCCcceeEEEcC--CCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHH
Q 024550 137 WSSCGDERIIIFTTNHKERLD-PALLRPGRMDMHINMS--HCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADV 213 (266)
Q Consensus 137 ~~~~~~~~ivi~ttn~~~~ld-~al~r~~Rf~~~i~~~--~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i 213 (266)
+....+|.++.....++ ..+...+.+ ..|... ..+.++...++...++.. ....++..+...++..|.-+
T Consensus 150 ----~~~~~lv~~sR~~~~~~~~~l~~~~~~-~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 150 ----PENLTLVVLSRNLPPLGIANLRVRDQL-LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred ----CCCeEEEEEeCCCCCCchHhHHhcCcc-eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHH
Confidence 23344434554321222 122211222 223333 778888888887666543 23456667777777777666
Q ss_pred HHHH
Q 024550 214 AEQL 217 (266)
Q Consensus 214 ~~~l 217 (266)
.-+.
T Consensus 223 ~l~~ 226 (903)
T PRK04841 223 QLIA 226 (903)
T ss_pred HHHH
Confidence 5443
No 329
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.82 E-value=9.2e-05 Score=69.20 Aligned_cols=155 Identities=15% Similarity=0.085 Sum_probs=90.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc--CCcEEEEeCCcccChhhHH-HHHHH------------------cccCCeeeeec
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL--KFDVYDLELSNLLGNNDLR-HILIA------------------TENKSILVVED 90 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~--~~~~~~i~~~~~~~~~~l~-~~~~~------------------~~~~~vl~iDe 90 (266)
-.+|+.|.+||||-.+++++.... ..+|+.++|..+.. ..+. ++|.. ...++.+|+||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~-~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE-ALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH-HhhhHHHhccCccccccchhccccccceecCCCccHHHH
Confidence 359999999999999999998766 57899999998853 2222 22211 12468999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-C-----CCCceEEEEecCCCCCCcccccCCC
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-S-----CGDERIIIFTTNHKERLDPALLRPG 164 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~-----~~~~~ivi~ttn~~~~ld~al~r~~ 164 (266)
|..|. ...++.||..|..-.- + ....+-||+||+.. -..|.+-|
T Consensus 416 Igd~p---------------------------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d---l~~lv~~g 465 (606)
T COG3284 416 IGDMP---------------------------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD---LAQLVEQG 465 (606)
T ss_pred hhhch---------------------------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC---HHHHHHcC
Confidence 99875 3456677777752111 0 11246688888863 12333444
Q ss_pred ccee-------EEEcCCCCHHHH---HHHHHHhhCCCC---CCcHHHH-HHHhhc-CCCCHHHHHHHH
Q 024550 165 RMDM-------HINMSHCTPSGF---KMLASNYLGIAE---HPLFVEI-EKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 165 Rf~~-------~i~~~~p~~~~~---~~i~~~~~~~~~---~~~~~~~-~~l~~~-~~~s~~~i~~~l 217 (266)
||.. ...+..|.-.+| ..++.+++..++ ..++.+. ..+... --.+-.++-+++
T Consensus 466 ~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~ 533 (606)
T COG3284 466 RFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVI 533 (606)
T ss_pred CchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHH
Confidence 4442 233455555444 455555554443 3333333 333332 225555665555
No 330
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0005 Score=57.76 Aligned_cols=162 Identities=18% Similarity=0.151 Sum_probs=88.3
Q ss_pred CCCCce-eEEecCCCCChHHHHHHHHHHcCCc---EEEEeCCcccC--------------------------hhhHHHHH
Q 024550 28 KAWKRG-YLLYGPPGTGKSSLIAAMANYLKFD---VYDLELSNLLG--------------------------NNDLRHIL 77 (266)
Q Consensus 28 ~~~~~~-iLl~GppGtGKT~la~ala~~~~~~---~~~i~~~~~~~--------------------------~~~l~~~~ 77 (266)
+...++ +.++|+.|||||++.|++...++.. .+.++...+.. ...+..++
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 444554 6789999999999999777766422 22333332221 12233334
Q ss_pred HHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC-CCCC
Q 024550 78 IATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH-KERL 156 (266)
Q Consensus 78 ~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~-~~~l 156 (266)
....++-++++||++.+.... -..+..|.+.-.+.... -.++.++=..- +..-
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~------------------------le~Lrll~nl~~~~~~~--l~ivL~Gqp~L~~~lr 180 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSA------------------------LEALRLLTNLEEDSSKL--LSIVLIGQPKLRPRLR 180 (269)
T ss_pred HhCCCCeEEeehhHhhhChhH------------------------HHHHHHHHhhcccccCc--eeeeecCCcccchhhc
Confidence 445567999999999885311 11111222222222111 12555553321 1111
Q ss_pred ---cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCC--c-HHH-HHHHhhcCCCCHHHHHHHH
Q 024550 157 ---DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHP--L-FVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 157 ---d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~--~-~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
-..+.. |++..|++++.+..+-...+++.++..+.+ + ..+ +..+.....-.|.-|.+.+
T Consensus 181 ~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 181 LPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 123445 888889999999998887788777654322 2 223 3333333444677666654
No 331
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.81 E-value=0.00026 Score=60.14 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
+..++|.||+|+|||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445999999999999999999988754
No 332
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.81 E-value=2.3e-05 Score=62.86 Aligned_cols=34 Identities=38% Similarity=0.661 Sum_probs=30.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+..|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4469999999999999999999999998877663
No 333
>PRK06696 uridine kinase; Validated
Probab=97.80 E-value=5.6e-05 Score=63.20 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=34.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNN 71 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~ 71 (266)
+.-|.+.|++|+||||+|+.|+..+ |.+++.++..++....
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 4468899999999999999999998 6778888877776443
No 334
>PRK06762 hypothetical protein; Provisional
Probab=97.79 E-value=3e-05 Score=61.64 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+.-++|+|+||+||||+++.++..++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 346889999999999999999999865555554
No 335
>PRK13946 shikimate kinase; Provisional
Probab=97.79 E-value=2.2e-05 Score=63.71 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=30.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+..|+|.|+||||||++++.+|+.+|.+++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999988766
No 336
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.78 E-value=9e-05 Score=63.46 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++....++++||||||||+++..++... |.+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777889999999999999999876643 6677777765
No 337
>PF13245 AAA_19: Part of AAA domain
Probab=97.78 E-value=4.8e-05 Score=52.42 Aligned_cols=33 Identities=39% Similarity=0.607 Sum_probs=21.7
Q ss_pred eeEEecCCCCChH-HHHHHHHHHc------CCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKS-SLIAAMANYL------KFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT-~la~ala~~~------~~~~~~i~~~ 65 (266)
-+++.|||||||| ++++.++... +..++.+.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3666999999999 4555555555 4455555543
No 338
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.77 E-value=2.9e-05 Score=62.02 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=28.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
..++|+|++|||||++++.+|..+|.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988654
No 339
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.77 E-value=0.00015 Score=59.56 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=41.7
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHH-----cCCcEE-------------EEeCCc-cc--------ChhhHHHHHH
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANY-----LKFDVY-------------DLELSN-LL--------GNNDLRHILI 78 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~-----~~~~~~-------------~i~~~~-~~--------~~~~l~~~~~ 78 (266)
+.+...+.++|.||+|+||||+++.++.. .|.++- .....+ +. ....+..++.
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~ 99 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVE 99 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHH
Confidence 34444556899999999999999999853 343321 000000 00 0123455666
Q ss_pred Hcc--cCCeeeeecch
Q 024550 79 ATE--NKSILVVEDID 92 (266)
Q Consensus 79 ~~~--~~~vl~iDeid 92 (266)
... .+.++++||.-
T Consensus 100 ~~~~~~p~llllDEp~ 115 (199)
T cd03283 100 KAKKGEPVLFLLDEIF 115 (199)
T ss_pred hccCCCCeEEEEeccc
Confidence 666 89999999975
No 340
>PRK06547 hypothetical protein; Provisional
Probab=97.77 E-value=3.6e-05 Score=61.72 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+.-|+++|++|||||++++.++..++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3456888999999999999999999887766544
No 341
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.77 E-value=5.4e-05 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEecCCCCChHHHHHHHHHHc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~ 55 (266)
+-|+||||||||++++.||+.+
T Consensus 56 lSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHH
Confidence 5589999999999999999986
No 342
>PLN02200 adenylate kinase family protein
Probab=97.76 E-value=3.5e-05 Score=64.94 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=27.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~ 67 (266)
+..+++.|||||||||+++.+|..+|... ++..++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 34588999999999999999999998754 454443
No 343
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.75 E-value=9.2e-05 Score=65.08 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC---------------------hhhHHHHHH---H
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG---------------------NNDLRHILI---A 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~ 79 (266)
|+|..+-+.+|||||||||+|+-.++... +...+.+++..... ......+.. .
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57777779999999999999999877544 66677776643221 011111111 1
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
.....+++||-+-.+.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 23578899999988864
No 344
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.75 E-value=1.8e-05 Score=65.87 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.1
Q ss_pred eEEecCCCCChHHHHHHHHHHc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998766666655
No 345
>PRK14528 adenylate kinase; Provisional
Probab=97.75 E-value=3e-05 Score=62.99 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.+++.||||+|||++++.++..+|.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999998876553
No 346
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.74 E-value=2.8e-05 Score=65.22 Aligned_cols=31 Identities=19% Similarity=0.505 Sum_probs=27.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.++|.||||+||||+++.+|+.+|.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999988766554
No 347
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.74 E-value=3.1e-05 Score=62.54 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-+++.||||+||||+++.++..+|...+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998665443
No 348
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.73 E-value=3e-05 Score=64.23 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=25.9
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|++.||||+||||+++.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766553
No 349
>PRK02496 adk adenylate kinase; Provisional
Probab=97.72 E-value=3.2e-05 Score=62.62 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-+++.||||+|||++++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 388999999999999999999998776554
No 350
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=0.00078 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.-++|.||||+|||++++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999753
No 351
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.69 E-value=3.8e-05 Score=63.82 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=26.0
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|+++||||+|||++++.+|..++...+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998766653
No 352
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.69 E-value=0.00015 Score=58.85 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++-++|+||||+|||++++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568999999999999999998876
No 353
>PRK14527 adenylate kinase; Provisional
Probab=97.69 E-value=3.6e-05 Score=62.75 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=27.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.+.-++++||||+||||+++.++..++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34569999999999999999999999875543
No 354
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.69 E-value=0.00019 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
+++++||+|+|||+++-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999887777665
No 355
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.68 E-value=0.00013 Score=60.62 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999983
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.00029 Score=64.54 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=26.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~ 66 (266)
+..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3468999999999999888887654 34555566544
No 357
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.68 E-value=5e-05 Score=60.99 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=25.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc---EEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD---VYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~---~~~i~~~~~ 67 (266)
.++.++|+|++|+|||++++.+...+..+ ++.+++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35679999999999999999988877443 666666655
No 358
>PRK13695 putative NTPase; Provisional
Probab=97.67 E-value=0.00028 Score=56.56 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=20.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987765
No 359
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00051 Score=61.74 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=26.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
++.++|.||+|+||||++..||..+ |..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3568999999999999999999877 3344445544
No 360
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.66 E-value=3.4e-05 Score=60.96 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.++++|.|||||||+++.|+ .+|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8988877655
No 361
>PRK04040 adenylate kinase; Provisional
Probab=97.66 E-value=5.4e-05 Score=61.64 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=24.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc--CCcE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL--KFDV 59 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~--~~~~ 59 (266)
+.-++++|+|||||||+++.++..+ +..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 3468999999999999999999999 4444
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.66 E-value=4.7e-05 Score=61.36 Aligned_cols=28 Identities=39% Similarity=0.668 Sum_probs=24.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
.++|.||||+||||+|+.|++.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999655444
No 363
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.66 E-value=0.00016 Score=60.71 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=36.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRHIL 77 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~~~ 77 (266)
|++...-+.|+||||||||+++..++... +...++++...-.....+..+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 67777779999999999999999998543 2566777766543444444443
No 364
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.65 E-value=8.8e-05 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEecCCCCChHHHHHHHHHHc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~ 55 (266)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999996
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.64 E-value=0.00016 Score=67.96 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++++..+|+.||+|||||++.|++|.-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4455569999999999999999999866
No 366
>PLN02674 adenylate kinase
Probab=97.64 E-value=0.00011 Score=62.01 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=26.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
...++|.||||+||||.++.+|..+|...+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4569999999999999999999999865543
No 367
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.64 E-value=4.1e-05 Score=57.64 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=21.1
Q ss_pred eEEecCCCCChHHHHHHHHHHc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~ 55 (266)
|+|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 368
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=0.00035 Score=56.94 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i 62 (266)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47889999999999888887766 4455544
No 369
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.61 E-value=7.3e-05 Score=57.18 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.1
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
++..-++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999999865
No 370
>PRK09354 recA recombinase A; Provisional
Probab=97.61 E-value=0.00027 Score=62.66 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
|++..+-+++|||||||||+|+-.++... |...+++++..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 56666679999999999999998776544 66666666554
No 371
>PRK10867 signal recognition particle protein; Provisional
Probab=97.61 E-value=0.00087 Score=61.38 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~ 67 (266)
+|.-++++||+|+||||++..+|..+ |..+..+++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 35568999999999999888777655 566677776654
No 372
>PRK01184 hypothetical protein; Provisional
Probab=97.61 E-value=5.9e-05 Score=60.98 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-++|+||||+||||+++ ++..+|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788898877554
No 373
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.60 E-value=4.8e-05 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.6
Q ss_pred EecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 36 LYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 36 l~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
|.||||+|||++++.||..+|...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 68999999999999999999775443
No 374
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.60 E-value=0.00028 Score=57.17 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=22.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+-++|+||+|+||++++..+....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999999986
No 375
>PLN02199 shikimate kinase
Probab=97.59 E-value=0.00014 Score=62.76 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=30.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
..+|+|+|.+|+|||++++.+|+.+|.+++..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 558999999999999999999999999998766
No 376
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00023 Score=59.00 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.|+.|||||||||+.|-+|..+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHh
Confidence 458899999999999999999876
No 377
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.57 E-value=0.0016 Score=57.14 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=29.3
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCC---CcHH-HHHHHhhcCCCCHHHHH
Q 024550 169 HINMSHCTPSGFKMLASNYLGIAEH---PLFV-EIEKLIATAKVTPADVA 214 (266)
Q Consensus 169 ~i~~~~p~~~~~~~i~~~~~~~~~~---~~~~-~~~~l~~~~~~s~~~i~ 214 (266)
.|+++..+.++...++..|....-. .... -.+.+....+.+|+++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 6899999999999999977755321 1222 22333444456776654
No 378
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.56 E-value=0.00024 Score=59.39 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++...-++++||||+|||+++..+|... +.+.+++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67777779999999999999999998754 6778888877
No 379
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.55 E-value=0.00022 Score=59.31 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++...-++++||||||||+++..+|... +.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67777779999999999999999998765 5667677654
No 380
>PRK04182 cytidylate kinase; Provisional
Probab=97.55 E-value=8.4e-05 Score=59.55 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.|+|.|+||||||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
No 381
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.54 E-value=0.0005 Score=57.31 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=37.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---C------CcEEEEeCCcccChhhHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---K------FDVYDLELSNLLGNNDLRHILI 78 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~------~~~~~i~~~~~~~~~~l~~~~~ 78 (266)
|++...-+.|+||||+|||+++..+|... + ...++++.........+..+..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 67777779999999999999999988764 2 5667777765444445554443
No 382
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.54 E-value=0.00027 Score=63.50 Aligned_cols=28 Identities=43% Similarity=0.693 Sum_probs=24.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
.+..+++.||.|||||++.+++...+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3567999999999999999999888743
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00023 Score=55.96 Aligned_cols=29 Identities=41% Similarity=0.521 Sum_probs=24.4
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.+...+.|.||+|+|||+++++++....
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455689999999999999999998763
No 384
>PRK14526 adenylate kinase; Provisional
Probab=97.53 E-value=9.2e-05 Score=61.40 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=24.8
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
++|+||||+||||+++.+|..++.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876543
No 385
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.52 E-value=0.00021 Score=63.45 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=43.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
|+|...+++|||||.||||+++.+|.+-++..+++.--+. -+-.+......-|-+|||+-.-+
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~------ShFWLqPL~d~Ki~llDDAT~~c 320 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK------SHFWLQPLADAKIALLDDATYPC 320 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT------SCGGGGGGCT-SSEEEEEE-HHH
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC------CcccccchhcCcEEEEcCCcccH
Confidence 7888889999999999999999999999998876632111 01122233455788899887543
No 386
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.50 E-value=0.00011 Score=64.20 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=25.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-CCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-KFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-~~~~~~ 61 (266)
.-+++.|||||||||+++.++..+ +..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 458899999999999999999998 554444
No 387
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.50 E-value=0.00013 Score=60.93 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
-|+|.+..+|+.||||||||+++..++... |-+.+.++...
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 378888889999999999999988766433 67777777543
No 388
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.50 E-value=0.00046 Score=63.76 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=46.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC--------------------hhhHHHHHHH--cc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG--------------------NNDLRHILIA--TE 81 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~--------------------~~~l~~~~~~--~~ 81 (266)
|+++..-++++|+||+|||+++..++... +.++++++...... ...+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777779999999999999999887755 45667776543210 1112222222 23
Q ss_pred cCCeeeeecchhhH
Q 024550 82 NKSILVVEDIDCCI 95 (266)
Q Consensus 82 ~~~vl~iDeid~l~ 95 (266)
.+.+++||.+..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 57889999998764
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.50 E-value=0.00036 Score=61.32 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=38.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRHILIA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~~~~~ 79 (266)
|++...-+.|+||||||||.++..+|-.. +...++++...-.....+.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 56666678999999999999998877422 457788887765556666655443
No 390
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.50 E-value=0.00011 Score=59.71 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=24.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998876543
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.50 E-value=0.00063 Score=66.76 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 45889999999999999999876
No 392
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.50 E-value=0.00017 Score=60.91 Aligned_cols=41 Identities=27% Similarity=0.215 Sum_probs=32.2
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHH---cCCcEEEEeCCc
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANY---LKFDVYDLELSN 66 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~---~~~~~~~i~~~~ 66 (266)
-|++++..+|++||||||||+++..++.+ -|.+.++++...
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 37888888999999999999999876554 266777777554
No 393
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.49 E-value=0.00011 Score=58.39 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=26.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|.++|++|+|||++++.++..+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887553
No 394
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.49 E-value=8.3e-05 Score=58.92 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=20.9
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77765
No 395
>PRK08233 hypothetical protein; Provisional
Probab=97.48 E-value=0.00014 Score=58.42 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-CcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-FDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-~~~~~i~~~ 65 (266)
-+.+.|+||+||||+++.|+..++ .+++..+..
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 467889999999999999999985 444444433
No 396
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.48 E-value=0.0026 Score=58.22 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=29.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~ 67 (266)
|..++++||+|+||||++..+|..+ |..+..+++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4569999999999999988888764 456777776654
No 397
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.48 E-value=0.00018 Score=67.38 Aligned_cols=33 Identities=36% Similarity=0.594 Sum_probs=26.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC-CcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK-FDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~-~~~~~i~ 63 (266)
.+.++|.||||+|||+|++.|+..+. .++|.+.
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 34688999999999999999999883 4666553
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.48 E-value=0.00047 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=23.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+++++||+|+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5799999999999999999998873
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.47 E-value=0.00017 Score=57.29 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.8
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+.+...+.|.||+|+|||||++.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455568899999999999999999865
No 400
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.47 E-value=0.00017 Score=58.13 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=25.0
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
++++||||||||+++..++... |.+.+.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999998877654 5566666543
No 401
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.47 E-value=0.00016 Score=67.50 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=68.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc----cC---hhhHHHHH-H-----HcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL----LG---NNDLRHIL-I-----ATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~----~~---~~~l~~~~-~-----~~~~~~vl~iDeid~l~~~~~ 99 (266)
++||+|.||||||-+.+.+++-....++..-...- +. ...+..-| . -...++|-+|||+|.+-. .+
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd-qD 562 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND-QD 562 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc-cc
Confidence 49999999999999999999988777665432211 10 01111111 1 124678999999998842 11
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-----------C--CCcccccCCCcc
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-----------E--RLDPALLRPGRM 166 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-----------~--~ld~al~r~~Rf 166 (266)
+.+. +-+..+........++...|.. ...+|+|+|+. + .+...+++ ||
T Consensus 563 RtSI----------HEAMEQQSISISKAGIVtsLqA-------rctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RF 623 (854)
T KOG0477|consen 563 RTSI----------HEAMEQQSISISKAGIVTSLQA-------RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RF 623 (854)
T ss_pred cchH----------HHHHHhcchhhhhhhHHHHHHh-------hhhhheecCCCCCccCCccchhhccccccchhh--hc
Confidence 1110 0001112222333334444443 36789999862 2 34567788 99
Q ss_pred eeEEEc
Q 024550 167 DMHINM 172 (266)
Q Consensus 167 ~~~i~~ 172 (266)
+.-.-+
T Consensus 624 DiLcVv 629 (854)
T KOG0477|consen 624 DILCVV 629 (854)
T ss_pred ceeeee
Confidence 865444
No 402
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.46 E-value=0.0002 Score=61.34 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=33.9
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
-|++..+.+|++|+||||||+++..++... |.+.+.++....
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 468888889999999999999988777655 677888776644
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.46 E-value=0.0005 Score=55.37 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=39.7
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCC--cEEEEe-------CCcc-cChhhHHHH---HHHcccCCeeeeecchhh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKF--DVYDLE-------LSNL-LGNNDLRHI---LIATENKSILVVEDIDCC 94 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~--~~~~i~-------~~~~-~~~~~l~~~---~~~~~~~~vl~iDeid~l 94 (266)
+.+...+.|.||.|+|||||++.++..... --+.++ .... .+....+.+ ..-+.+|.++++||--.-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 344556889999999999999999986521 011111 1110 122222222 122357999999998743
No 404
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.45 E-value=0.00039 Score=61.10 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=34.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDL 73 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l 73 (266)
|++...-++++||||||||+++..+|... +...++++...-.....+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl 146 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI 146 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH
Confidence 46666668999999999999999888663 346788887663333333
No 405
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.44 E-value=0.00036 Score=61.49 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
++|..+.+||-||-.|||||+|.|+-.-+|...+.+++.. ..+.--+.-+-..-.++++|+-.-....
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKGq~~~~-------- 218 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPSDN-------- 218 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--SSTTT--------
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCCCcCCC--------
Confidence 6777889999999999999999999999999888888653 2444334444556677777765321100
Q ss_pred cCCccccccccccccchhhhhhhhhhhhcccc----CCCCc------eEEEEecCCCCCCcccccCCCcceeEEEcC
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS----SCGDE------RIIIFTTNHKERLDPALLRPGRMDMHINMS 173 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~------~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~ 173 (266)
.....+..-..+..|-++|||.-. ...-+ .--|.|+|.. .+|..+.- ||...+.|.
T Consensus 219 --------~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY-~iP~Tv~v--Rf~~~~~F~ 284 (417)
T PF06431_consen 219 --------KDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY-KIPQTVKV--RFCKVLDFR 284 (417)
T ss_dssp --------TT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE--
T ss_pred --------CCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-cCCcceee--eeEeeEecc
Confidence 001123334556667777776421 00000 1256788864 45888888 999888886
No 406
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.44 E-value=0.00018 Score=56.29 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=25.3
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
++++|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999988 55555554
No 407
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.44 E-value=0.00083 Score=66.10 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.1
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|+||.++|||++.+.++-.
T Consensus 329 ~~iITGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHH
Confidence 4889999999999999988743
No 408
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.44 E-value=0.00016 Score=59.22 Aligned_cols=35 Identities=37% Similarity=0.549 Sum_probs=27.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL 68 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~ 68 (266)
++|+||+|||||.++-++|+.+|.+++..+--...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 78999999999999999999999999998855443
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.003 Score=57.41 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=26.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 34454455443
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.42 E-value=0.00058 Score=61.21 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=38.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-------CCcEEEEeCCccc--------------------ChhhHHHHHHHcccC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-------KFDVYDLELSNLL--------------------GNNDLRHILIATENK 83 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-------~~~~~~i~~~~~~--------------------~~~~l~~~~~~~~~~ 83 (266)
++-+.|.||.|+||||...-||..+ .+.++.++.-.+. +...+...+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 4558899999999998666666555 2445555544333 233444444445556
Q ss_pred Ceeeeecch
Q 024550 84 SILVVEDID 92 (266)
Q Consensus 84 ~vl~iDeid 92 (266)
.+|++|=+.
T Consensus 283 d~ILVDTaG 291 (407)
T COG1419 283 DVILVDTAG 291 (407)
T ss_pred CEEEEeCCC
Confidence 777776655
No 411
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.41 E-value=0.0006 Score=60.57 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRHILIA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~~~~~ 79 (266)
|++...-..|+||||||||.++..+|-.. +...++++...-.....+.++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 46666668899999999999999887432 357788887765556666665543
No 412
>PLN02459 probable adenylate kinase
Probab=97.41 E-value=0.00019 Score=61.10 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=25.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.++|.||||+||||+++.+|+.++...+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48889999999999999999999865544
No 413
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.40 E-value=0.00034 Score=54.37 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCC---cEE-----EEeC-CcccChhhHHHH---HHHcccCCeeeeecchhh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKF---DVY-----DLEL-SNLLGNNDLRHI---LIATENKSILVVEDIDCC 94 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~---~~~-----~i~~-~~~~~~~~l~~~---~~~~~~~~vl~iDeid~l 94 (266)
+.+...+.|.||+|+||||+++.++..... .++ .+.. ..+ +....+.+ ..-+.+|.++++||-..-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 344556889999999999999999987621 110 1111 112 22222222 223468999999998743
No 414
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.40 E-value=0.0002 Score=58.69 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
+.-++++|+||+||||+++.+|..++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34588999999999999999999988754
No 415
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.39 E-value=0.00097 Score=58.43 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh-hhHHHHHHHcccCCeeeeecchh
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN-NDLRHILIATENKSILVVEDIDC 93 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~~vl~iDeid~ 93 (266)
.+....++|+|+.|+|||+++..+..-+|.....+..+..... ..-.-.+.......+++.||++.
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHRFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCCCchhhhhcCCEEEEecCCCC
Confidence 3445669999999999999999999888765432221111110 00011223445678888999873
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.00081 Score=62.63 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..+.|+||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999998754
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.38 E-value=0.00018 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.-++|.|+||+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999885
No 418
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.38 E-value=0.0004 Score=60.29 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
..|-.+++.|++|||||++|..+|..++.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345569999999999999999999999887
No 419
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.37 E-value=0.0002 Score=60.81 Aligned_cols=31 Identities=39% Similarity=0.551 Sum_probs=25.5
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
|+|+|+||+||||+++.++..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999987 455555543
No 420
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.37 E-value=0.00073 Score=55.54 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=20.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~ 53 (266)
.+.-++|+||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 344599999999999999999993
No 421
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.37 E-value=0.00098 Score=65.34 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=40.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC----------hhhHHHHHHH-------cccCCeeeeecc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG----------NNDLRHILIA-------TENKSILVVEDI 91 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~----------~~~l~~~~~~-------~~~~~vl~iDei 91 (266)
+-++|.|+||||||++++++...+ |..++.+.+..... ...+..++.. .....+|++||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 357899999999999999987654 55666554433210 1112222211 124689999999
Q ss_pred hhhH
Q 024550 92 DCCI 95 (266)
Q Consensus 92 d~l~ 95 (266)
-.+.
T Consensus 449 sMv~ 452 (744)
T TIGR02768 449 GMVG 452 (744)
T ss_pred ccCC
Confidence 8764
No 422
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.001 Score=54.54 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=27.7
Q ss_pred HHHHHHh--CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 20 KEFYRRV--GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 20 ~~~~~~~--~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++-.++ |+|.+.-+++-|+.|||||.+.+.++.-+
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~ 52 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGF 52 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHH
Confidence 3444455 47777779999999999999999988655
No 423
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.36 E-value=0.00052 Score=60.51 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNL 67 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~ 67 (266)
|++.+.-++++||||||||+++..+|... +...++++...-
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 57766679999999999999999998653 346777777653
No 424
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.36 E-value=0.0012 Score=64.55 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+-+++.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999887655
No 425
>PRK14529 adenylate kinase; Provisional
Probab=97.36 E-value=0.00015 Score=60.45 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
.|+|.||||+||||+++.|+..++.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3789999999999999999999987765
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.00082 Score=56.15 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=39.8
Q ss_pred CceeEEecCCCCChHHHHHHHHH-Hc----CCcEE--------------EEeCCc-ccC--------hhhHHHHHHHccc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN-YL----KFDVY--------------DLELSN-LLG--------NNDLRHILIATEN 82 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~-~~----~~~~~--------------~i~~~~-~~~--------~~~l~~~~~~~~~ 82 (266)
...++|.||.|+|||++.+.++. .+ |.... .+...+ +.. -..+..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 34589999999999999999987 22 22111 111110 100 1335566777788
Q ss_pred CCeeeeecch
Q 024550 83 KSILVVEDID 92 (266)
Q Consensus 83 ~~vl~iDeid 92 (266)
+.++++||+.
T Consensus 111 ~sLvllDE~~ 120 (222)
T cd03287 111 RSLVILDELG 120 (222)
T ss_pred CeEEEEccCC
Confidence 9999999986
No 427
>PRK04328 hypothetical protein; Provisional
Probab=97.34 E-value=0.00034 Score=59.50 Aligned_cols=40 Identities=28% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
|+++...+|++||||||||+++..++.+. |-+.++++...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 68888889999999999999988766542 56666666543
No 428
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.33 E-value=0.00034 Score=56.06 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=26.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
+..+.|.|+||+|||++++.++..+ +..+..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4468899999999999999999987 334455543
No 429
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.33 E-value=0.00074 Score=60.24 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=23.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+...++++||+|+||||+++++...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345689999999999999999988764
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.33 E-value=0.0011 Score=61.99 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|+++...+|+.||||+|||+++-.++... |-+.++++..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 68888889999999999999998887755 4556666544
No 431
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.32 E-value=0.0011 Score=54.52 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=19.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.-+.+.||+|||||++|-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999999988765
No 432
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.32 E-value=0.0011 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.4
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
.-++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999864
No 433
>PTZ00494 tuzin-like protein; Provisional
Probab=97.31 E-value=0.012 Score=53.62 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc
Q 024550 21 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67 (266)
Q Consensus 21 ~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~ 67 (266)
..+.++....|+.+.|.|..|||||++.|.--..-+.+.+.++.-..
T Consensus 385 qvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~ 431 (664)
T PTZ00494 385 SVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGT 431 (664)
T ss_pred HHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCC
Confidence 44667778889999999999999999999999989999888876543
No 434
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.31 E-value=0.00058 Score=58.68 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=40.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC---cEEEEeC-Cccc-------------ChhhHHHHHHHc--ccCCeeeeecc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF---DVYDLEL-SNLL-------------GNNDLRHILIAT--ENKSILVVEDI 91 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~---~~~~i~~-~~~~-------------~~~~l~~~~~~~--~~~~vl~iDei 91 (266)
..++++.||+|+||||+++++...+.. .++.+.- .++. ....+..++..+ ..|.++++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 567999999999999999999988833 3343331 1111 122455555544 46899999999
Q ss_pred hh
Q 024550 92 DC 93 (266)
Q Consensus 92 d~ 93 (266)
..
T Consensus 207 R~ 208 (270)
T PF00437_consen 207 RD 208 (270)
T ss_dssp -S
T ss_pred CC
Confidence 84
No 435
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.31 E-value=0.00084 Score=57.88 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=28.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
++.+.|+||+|+||||++..+|..+ |..+..+++..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4568889999999999999888766 555666665543
No 436
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.31 E-value=0.00023 Score=58.37 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc-CCcEEEEeCCccc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL-KFDVYDLELSNLL 68 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~-~~~~~~i~~~~~~ 68 (266)
.|..+++.|+||+|||+++..+...+ +..++.++...+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 35668999999999999999999988 7778888877664
No 437
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.30 E-value=0.0014 Score=65.64 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=39.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc----------ChhhHHHHHHH-------cccCCeeeeecch
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL----------GNNDLRHILIA-------TENKSILVVEDID 92 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~----------~~~~l~~~~~~-------~~~~~vl~iDeid 92 (266)
-++|.|++||||||+++++...+ |..++.+.+.... ....+..++.. .....||+|||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 46799999999999988766543 6666655443221 01223333321 1245799999999
Q ss_pred hhH
Q 024550 93 CCI 95 (266)
Q Consensus 93 ~l~ 95 (266)
.+.
T Consensus 444 Mv~ 446 (988)
T PRK13889 444 MVG 446 (988)
T ss_pred cCC
Confidence 764
No 438
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.30 E-value=0.00083 Score=55.14 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.4
Q ss_pred ceeEEecCCCCChHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMA 52 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala 52 (266)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 439
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.29 E-value=0.00044 Score=57.86 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=30.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++....++++||||+|||+++..++... +.+.+.++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 68888889999999999999998776432 5566666653
No 440
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.29 E-value=0.00022 Score=57.34 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
-++|.||||+||||+++.++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998753
No 441
>PRK12338 hypothetical protein; Provisional
Probab=97.28 E-value=0.00028 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
|.-+++.|+|||||||+++.+|..+|...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45688999999999999999999998764
No 442
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.28 E-value=0.00059 Score=60.13 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=27.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4458899999999999999999877 4455555543
No 443
>PRK13808 adenylate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=62.57 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=25.6
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|+|+||||+|||++++.|+..+|++.+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 89999999999999999999998755543
No 444
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00018 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.6
Q ss_pred eEEecCCCCChHHHHHHHHHHcC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~ 56 (266)
++|.|+||+|||++++.+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999984
No 445
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.28 E-value=0.00029 Score=56.84 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.9
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
|.|+|++|+||||+++.++. +|.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 787765544
No 446
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.28 E-value=0.00052 Score=61.41 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-+++.|.||||||.++-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999988
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.28 E-value=0.00047 Score=56.90 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=28.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC-CcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK-FDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~-~~~~~i~~~~~ 67 (266)
+.-|.|.||+|||||||++.|+..++ ..+..++...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 34588999999999999999999984 34455555444
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.27 E-value=0.00051 Score=57.74 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++....++++||||||||+++..++... |...++++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 57777789999999999999976554433 5556666543
No 449
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.27 E-value=0.0012 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|+||+|||++++++....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999987544
No 450
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.26 E-value=0.001 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.2
Q ss_pred ceeEEecCCCCChHH-HHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSS-LIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~-la~ala~~~ 55 (266)
+.+++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 444444443
No 451
>PTZ00035 Rad51 protein; Provisional
Probab=97.26 E-value=0.001 Score=59.16 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRHILI 78 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~~~~ 78 (266)
|++...-+.|+||||||||+++..++... +...++++.........+..+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~ 174 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE 174 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 56666668899999999999999887533 34566777665445555555543
No 452
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.24 E-value=0.00037 Score=56.23 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.2
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG 69 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~ 69 (266)
+.+.|+||||||++++.++..+ +.+...++..++..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 6789999999999999999987 35666777666653
No 453
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.23 E-value=0.00057 Score=57.62 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
|+++..-++|.|+||+|||+++..++... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 77777789999999999999988877654 77888887654
No 454
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.0032 Score=53.08 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred ceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 143 ERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 143 ~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
++.+|..+-..-.+|+.++. -.+..+-++ .+...+..|++.+..
T Consensus 128 ~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 128 NISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred ceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhccc
Confidence 46778888888889999876 677777675 577777777776653
No 455
>PLN02165 adenylate isopentenyltransferase
Probab=97.22 E-value=0.00036 Score=61.41 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=28.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
.++|.||+|+|||+++..||..++..++..+.-
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 488999999999999999999998877665544
No 456
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0021 Score=53.79 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.+...+.++||.|+|||||++.++.+.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 45566679999999999999999998766
No 457
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.21 E-value=0.0019 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred eEEecCCCCChHHHHHHHHHH
Q 024550 34 YLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~ 54 (266)
+++.|+||+|||+|++++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999753
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.21 E-value=0.00037 Score=52.52 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
++..-++|+|+=|+|||+++|.++..+|..-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3345699999999999999999999998754
No 459
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.21 E-value=0.00036 Score=57.12 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
-+.++|++|+|||++++.++..+|.+++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4789999999999999999998888776443
No 460
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.21 E-value=0.0012 Score=60.55 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
.|.-++++|+||||||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36679999999999999999999999885
No 461
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.20 E-value=0.00046 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
..+.+.||+|+||||+++.++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 358899999999999999999988764
No 462
>PRK08356 hypothetical protein; Provisional
Probab=97.20 E-value=0.00039 Score=56.83 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=24.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSN 66 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~ 66 (266)
-++|+||||+||||+++.+. ..|.+ .+++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 47889999999999999996 46665 444443
No 463
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.20 E-value=0.00037 Score=56.61 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.8
Q ss_pred eEEecCCCCChHHHHHHHHHHc-CCcEEEEeCCcc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL-KFDVYDLELSNL 67 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~-~~~~~~i~~~~~ 67 (266)
|.+.|+|||||||+++.++..+ +..+ ++..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~--i~~Ddf 34 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCV--IHQDDF 34 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeE--Eccccc
Confidence 5688999999999999999998 3444 444444
No 464
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.20 E-value=0.00068 Score=56.60 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=32.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
|+++...+++.|+||+|||+++..++... |.+.++++...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777789999999999999988887543 66777777654
No 465
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0017 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=26.4
Q ss_pred HHHHHhCCC--CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 21 EFYRRVGKA--WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 21 ~~~~~~~~~--~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..|..+.+. +...+.+.||.|+|||||.|.+|.-+
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 344444433 34458899999999999999999876
No 466
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.19 E-value=0.00059 Score=53.63 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=28.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
.-|+|+|.||+||||+|+++...+ |.+.+.++...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 348899999999999999999887 677777775433
No 467
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.19 E-value=0.00066 Score=58.40 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=34.0
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc----------ChhhHHHHHH-----HcccCCeeeeecchhhH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL----------GNNDLRHILI-----ATENKSILVVEDIDCCI 95 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~----------~~~~l~~~~~-----~~~~~~vl~iDeid~l~ 95 (266)
++|+|.||+|||++++.|+..+ +..++.++...+. .+...+..+. ......|+++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999876 4556556533222 1122222222 22456899999988764
Q ss_pred H
Q 024550 96 E 96 (266)
Q Consensus 96 ~ 96 (266)
+
T Consensus 84 g 84 (270)
T PF08433_consen 84 G 84 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.00055 Score=56.00 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.5
Q ss_pred eEEecCCCCChHHHHHHHHHHcC-CcEEEEeCCccc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLK-FDVYDLELSNLL 68 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~-~~~~~i~~~~~~ 68 (266)
+.|.||+|+||||+++.++..++ .....++...+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 56899999999999999999873 344555555443
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.17 E-value=0.00056 Score=63.84 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHH----cCCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LKFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~----~~~~~~~i~~~ 65 (266)
|+++.+.+|++||||||||+++..++.. .|-+.+++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6888889999999999999999987543 25677777764
No 470
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.17 E-value=0.00043 Score=65.43 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=29.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
.++|.|.||+||||+.+.+|+.++.+|+.++.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 49999999999999999999999999998873
No 471
>PRK14974 cell division protein FtsY; Provisional
Probab=97.17 E-value=0.0012 Score=58.46 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=26.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+.-++|+||||+||||++..+|..+ |..+..+.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4569999999999999988888766 4445445444
No 472
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.17 E-value=0.00052 Score=60.10 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=29.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
.-+++.||+|||||+++..+|..++..++..+.-
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 4588999999999999999999998877766543
No 473
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.17 E-value=0.0023 Score=52.38 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
|+-++|+||+|+||||++--+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568999999999999888887766
No 474
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.00041 Score=53.88 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLR 74 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~ 74 (266)
.+++.|++||||||++++++.+++.+|+.- .++....++.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~Nve 53 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVE 53 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHH
Confidence 478889999999999999999999887643 3444444443
No 475
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.16 E-value=0.00023 Score=65.04 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=40.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe----CCcccC----hhhHHHH-HHH----cccCCeeeeecchhhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLLG----NNDLRHI-LIA----TENKSILVVEDIDCCI 95 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~----~~~~~~----~~~l~~~-~~~----~~~~~vl~iDeid~l~ 95 (266)
++||-|.|||.||-|.+-+-+.....+|..- ++.++. ...-+.. ++. ...++|++|||+|.+-
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 4999999999999999988877765555432 222221 0001111 111 2468999999999884
No 476
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.16 E-value=0.00031 Score=58.75 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred eEEecCCCCChHHHHHHHHHHc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~ 55 (266)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 477
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.16 E-value=0.00034 Score=57.15 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.4
Q ss_pred eEEecCCCCChHHHHHHHHHHcC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~ 56 (266)
|-+.||||+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999996
No 478
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.16 E-value=0.00062 Score=54.38 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=27.9
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
++++||||+|||++++.++..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6889999999999999998876 566777776654
No 479
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.16 E-value=0.0023 Score=50.35 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
+++|.|++|+|||+|+..+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 47899999999999999987643
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.15 E-value=0.00058 Score=56.38 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=22.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
-+.|.||+|+||||++++++..++.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3678999999999999999998763
No 481
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.15 E-value=0.00044 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.0
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
++|.||+|+|||++++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987544
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.00044 Score=56.77 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++.-+.|+||+|+|||++++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 455689999999999999999999875
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00098 Score=53.00 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=30.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
+.-++|+|.+|+||||+|.++...+ |.+.+.++...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4458899999999999999999887 778887775433
No 484
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.13 E-value=0.00088 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-++|.||.|+|||||+++|-..-
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998754
No 485
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.13 E-value=0.0017 Score=57.76 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRHILIA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~~~~~ 79 (266)
|++...-+.++|+||+|||.++..+|... +...++++...-....++.++...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~ 180 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAER 180 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHH
Confidence 46666668899999999999998887432 236788887765566666666443
No 486
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0014 Score=58.70 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
.+..++|+||+|+||||++..+|..+ +..+..+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 34568999999999999999998766 445555555444
No 487
>PRK06761 hypothetical protein; Provisional
Probab=97.12 E-value=0.0005 Score=59.33 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=26.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+-++|.||||+||||+++.++..+....+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 35889999999999999999999976555444
No 488
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.12 E-value=0.0023 Score=54.89 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=38.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC---CcEEEEe-CCccc----------C--hhhHHHHHHHc--ccCCeeeeecchh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLE-LSNLL----------G--NNDLRHILIAT--ENKSILVVEDIDC 93 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~-~~~~~----------~--~~~l~~~~~~~--~~~~vl~iDeid~ 93 (266)
..++|.||+|+||||+++++...+. ..++.+. ..++. . ...+...+..+ ..|.+++++|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 3489999999999999999977663 2344432 11110 0 11233333332 4699999999974
No 489
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.0016 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.4
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
.-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998873
No 490
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.11 E-value=0.0018 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|+||+|||+++..+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 491
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0008 Score=64.03 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++|...+-|+||+|+||||++.-+-+.+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5556669999999999999999887755
No 492
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.11 E-value=0.0028 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|+||+|||+++..+...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998863
No 493
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.11 E-value=0.0011 Score=60.36 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=29.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
+.-++|+||+|+||||++..+|..+ |..+..+++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4558999999999999999999877 666666666544
No 494
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0011 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
....+-|.|.+||||||++|.+..-..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 344588999999999999999998663
No 495
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.10 E-value=0.0019 Score=52.29 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=18.0
Q ss_pred eEEecCCCCChHHHHHHHH
Q 024550 34 YLLYGPPGTGKSSLIAAMA 52 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala 52 (266)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.10 E-value=0.00042 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
-++|.||+|+|||++++.|+.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999997644
No 497
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.10 E-value=0.0024 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
+.++|.|+||+|||+++..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988753
No 498
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.09 E-value=0.0016 Score=63.27 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+++..-+-+.|++|||||||++.+..-.
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444459999999999999999998755
No 499
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.09 E-value=0.00044 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred ecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 37 YGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 37 ~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|||||||||+++.++..++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998755544
No 500
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.09 E-value=0.0032 Score=53.84 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChhhHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNNDLRH 75 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~~l~~ 75 (266)
|++...-.=|+||||||||.++..+|-.. +...++++...-.....+.+
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 45544445599999999999999887554 44588888776544333333
Done!