Query 024550
Match_columns 266
No_of_seqs 195 out of 2295
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.7E-41 9.2E-46 300.7 16.8 200 3-217 154-362 (405)
2 4b4t_I 26S protease regulatory 100.0 1E-39 3.4E-44 291.5 19.3 200 3-217 188-396 (437)
3 4b4t_M 26S protease regulatory 100.0 3.3E-40 1.1E-44 297.6 16.3 200 3-217 187-395 (434)
4 4b4t_L 26S protease subunit RP 100.0 5.9E-40 2E-44 296.2 16.8 200 3-217 187-395 (437)
5 4b4t_H 26S protease regulatory 100.0 8.1E-39 2.8E-43 288.2 19.7 200 3-217 215-423 (467)
6 4b4t_K 26S protease regulatory 100.0 7.5E-39 2.6E-43 288.6 19.0 200 3-217 178-387 (428)
7 3cf2_A TER ATPase, transitiona 100.0 2.4E-35 8.2E-40 282.9 5.1 200 3-217 483-691 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.6E-33 5.6E-38 270.3 15.4 197 3-217 210-415 (806)
9 3cf0_A Transitional endoplasmi 100.0 3.5E-29 1.2E-33 217.6 21.1 200 3-217 21-229 (301)
10 2x8a_A Nuclear valosin-contain 100.0 7E-29 2.4E-33 212.8 20.5 197 3-217 16-226 (274)
11 3h4m_A Proteasome-activating n 100.0 6.3E-28 2.2E-32 207.5 18.1 201 3-218 23-232 (285)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-27 5.3E-32 209.0 19.3 195 3-217 18-223 (322)
13 2ce7_A Cell division protein F 100.0 8E-28 2.7E-32 219.9 17.9 200 3-218 22-230 (476)
14 3eie_A Vacuolar protein sortin 99.9 3.1E-27 1.1E-31 207.1 16.4 195 3-217 24-228 (322)
15 2qz4_A Paraplegin; AAA+, SPG7, 99.9 7E-27 2.4E-31 198.2 17.7 201 3-218 12-223 (262)
16 3hu3_A Transitional endoplasmi 99.9 5.5E-27 1.9E-31 215.7 16.8 197 3-217 210-415 (489)
17 1lv7_A FTSH; alpha/beta domain 99.9 8.3E-27 2.8E-31 197.8 16.4 199 3-217 18-225 (257)
18 2qp9_X Vacuolar protein sortin 99.9 1E-26 3.5E-31 206.4 16.8 195 3-217 57-261 (355)
19 2zan_A Vacuolar protein sortin 99.9 5.3E-26 1.8E-30 207.4 16.0 195 3-217 140-345 (444)
20 2r62_A Cell division protease 99.9 7.5E-27 2.6E-31 199.1 9.4 202 3-218 17-227 (268)
21 3vfd_A Spastin; ATPase, microt 99.9 4E-25 1.4E-29 198.4 17.0 197 3-218 121-327 (389)
22 2dhr_A FTSH; AAA+ protein, hex 99.9 1.4E-25 4.9E-30 206.2 14.3 218 4-237 38-271 (499)
23 1ixz_A ATP-dependent metallopr 99.9 1.7E-24 6E-29 183.2 18.1 198 4-217 23-229 (254)
24 3d8b_A Fidgetin-like protein 1 99.9 5.8E-25 2E-29 195.3 15.7 197 3-218 90-296 (357)
25 3t15_A Ribulose bisphosphate c 99.9 1.4E-24 4.7E-29 187.9 16.3 170 26-214 31-221 (293)
26 3b9p_A CG5977-PA, isoform A; A 99.9 2.6E-24 8.8E-29 186.0 14.5 197 3-218 27-234 (297)
27 1ypw_A Transitional endoplasmi 99.9 2.3E-27 7.8E-32 230.3 -5.8 199 4-217 484-691 (806)
28 1iy2_A ATP-dependent metallopr 99.9 1.8E-23 6E-28 179.4 17.4 199 3-217 46-253 (278)
29 1ypw_A Transitional endoplasmi 99.9 4.1E-22 1.4E-26 193.5 14.2 197 3-217 210-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 3.7E-19 1.2E-23 156.3 19.2 160 30-218 54-228 (338)
31 3syl_A Protein CBBX; photosynt 99.8 2.5E-19 8.5E-24 155.3 16.7 188 4-217 38-255 (309)
32 2c9o_A RUVB-like 1; hexameric 99.8 5.3E-20 1.8E-24 168.4 7.5 152 26-177 58-226 (456)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 1.3E-18 4.4E-23 151.7 15.6 160 30-218 37-212 (324)
34 1d2n_A N-ethylmaleimide-sensit 99.8 3.4E-18 1.2E-22 145.8 16.2 144 23-186 56-210 (272)
35 1ofh_A ATP-dependent HSL prote 99.8 1.4E-18 4.7E-23 150.3 10.7 141 30-187 49-214 (310)
36 3hws_A ATP-dependent CLP prote 99.8 1.1E-18 3.8E-23 155.0 8.3 142 30-186 50-267 (363)
37 1g41_A Heat shock protein HSLU 99.7 8.9E-19 3E-23 158.3 4.9 157 3-184 21-188 (444)
38 3uk6_A RUVB-like 2; hexameric 99.7 4E-17 1.4E-21 144.8 15.1 158 27-218 66-304 (368)
39 2chg_A Replication factor C sm 99.7 1.3E-16 4.6E-21 130.4 16.3 151 33-217 40-204 (226)
40 4fcw_A Chaperone protein CLPB; 99.7 3.1E-17 1.1E-21 142.1 13.0 130 32-190 48-231 (311)
41 3m6a_A ATP-dependent protease 99.7 2.2E-17 7.6E-22 153.9 11.9 133 30-188 107-266 (543)
42 3pvs_A Replication-associated 99.7 7.4E-17 2.5E-21 146.9 13.9 149 32-217 51-215 (447)
43 1um8_A ATP-dependent CLP prote 99.7 1.1E-16 3.8E-21 142.7 13.3 142 30-186 71-284 (376)
44 1l8q_A Chromosomal replication 99.7 5.3E-17 1.8E-21 141.9 11.0 156 31-217 37-208 (324)
45 3te6_A Regulatory protein SIR3 99.7 8.3E-17 2.8E-21 139.8 11.4 131 28-190 42-213 (318)
46 3u61_B DNA polymerase accessor 99.7 1.9E-16 6.6E-21 138.2 13.7 125 30-188 47-178 (324)
47 1jbk_A CLPB protein; beta barr 99.7 2.6E-17 8.9E-22 131.7 6.5 128 29-184 41-194 (195)
48 1sxj_A Activator 1 95 kDa subu 99.7 8.2E-16 2.8E-20 142.6 17.0 156 30-217 76-252 (516)
49 1njg_A DNA polymerase III subu 99.7 1.3E-15 4.6E-20 125.9 16.5 153 31-217 45-228 (250)
50 2r44_A Uncharacterized protein 99.7 2.4E-16 8.2E-21 138.0 11.8 131 31-190 46-200 (331)
51 1in4_A RUVB, holliday junction 99.7 1.9E-15 6.6E-20 132.7 17.1 158 31-217 51-223 (334)
52 3pxi_A Negative regulator of g 99.7 2.7E-16 9.1E-21 152.2 12.0 128 33-190 523-677 (758)
53 2chq_A Replication factor C sm 99.7 1.2E-15 4.1E-20 132.2 14.9 151 33-217 40-204 (319)
54 1r6b_X CLPA protein; AAA+, N-t 99.7 4.6E-16 1.6E-20 150.5 13.4 128 32-189 489-667 (758)
55 2qby_B CDC6 homolog 3, cell di 99.7 1.4E-15 4.7E-20 135.3 15.5 127 30-189 44-211 (384)
56 2z4s_A Chromosomal replication 99.7 1.7E-16 5.8E-21 144.4 9.7 158 31-217 130-306 (440)
57 3bos_A Putative DNA replicatio 99.7 3E-16 1E-20 130.4 10.0 157 30-217 51-217 (242)
58 2v1u_A Cell division control p 99.6 2.3E-15 8E-20 133.6 14.2 162 30-217 43-249 (387)
59 3pxg_A Negative regulator of g 99.6 1.2E-14 4.1E-19 133.2 17.0 121 30-190 200-340 (468)
60 1sxj_B Activator 1 37 kDa subu 99.6 6.7E-15 2.3E-19 127.7 14.4 150 34-217 45-209 (323)
61 1a5t_A Delta prime, HOLB; zinc 99.6 1.5E-14 5.3E-19 126.9 16.5 150 30-217 23-205 (334)
62 1qvr_A CLPB protein; coiled co 99.6 5.3E-15 1.8E-19 144.8 14.9 132 30-189 190-346 (854)
63 1iqp_A RFCS; clamp loader, ext 99.6 4.4E-15 1.5E-19 129.0 12.5 151 33-217 48-212 (327)
64 1jr3_A DNA polymerase III subu 99.6 1.2E-14 4.1E-19 128.7 15.4 153 31-217 38-221 (373)
65 1sxj_D Activator 1 41 kDa subu 99.6 7.7E-15 2.6E-19 129.0 14.0 151 33-217 60-235 (353)
66 2p65_A Hypothetical protein PF 99.6 1.3E-15 4.4E-20 121.4 6.5 121 29-176 41-187 (187)
67 1fnn_A CDC6P, cell division co 99.6 3E-14 1E-18 126.7 15.1 156 33-217 46-247 (389)
68 1g8p_A Magnesium-chelatase 38 99.6 1.5E-14 5.1E-19 127.1 12.8 128 31-187 45-231 (350)
69 3pxi_A Negative regulator of g 99.6 5.6E-14 1.9E-18 136.0 16.8 122 29-190 199-340 (758)
70 2qby_A CDC6 homolog 1, cell di 99.6 2.1E-14 7.3E-19 127.2 12.4 132 30-189 44-211 (386)
71 3n70_A Transport activator; si 99.6 7.4E-15 2.5E-19 113.5 8.1 110 30-174 23-143 (145)
72 2bjv_A PSP operon transcriptio 99.5 5.4E-14 1.8E-18 119.2 11.8 128 31-188 29-194 (265)
73 1sxj_C Activator 1 40 kDa subu 99.5 1E-13 3.5E-18 121.8 13.9 130 34-197 49-191 (340)
74 1qvr_A CLPB protein; coiled co 99.5 2E-14 6.9E-19 140.7 10.1 128 32-189 589-771 (854)
75 1sxj_E Activator 1 40 kDa subu 99.5 8.7E-14 3E-18 122.5 13.3 150 34-217 39-237 (354)
76 1r6b_X CLPA protein; AAA+, N-t 99.5 6.1E-14 2.1E-18 135.7 12.9 135 29-190 205-364 (758)
77 1ojl_A Transcriptional regulat 99.5 7.2E-14 2.5E-18 121.1 10.9 158 30-217 24-228 (304)
78 2gno_A DNA polymerase III, gam 99.5 2.1E-13 7.1E-18 118.2 10.8 122 31-188 18-152 (305)
79 4akg_A Glutathione S-transfera 99.5 1.3E-13 4.3E-18 146.2 10.6 138 30-189 1266-1432(2695)
80 3f9v_A Minichromosome maintena 99.4 1.9E-14 6.5E-19 135.4 2.8 129 33-191 329-493 (595)
81 3co5_A Putative two-component 99.4 6.2E-14 2.1E-18 108.1 3.8 109 31-174 27-141 (143)
82 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 5.2E-13 1.8E-17 122.8 8.9 128 31-189 41-197 (500)
83 1w5s_A Origin recognition comp 99.3 3.4E-11 1.2E-15 107.7 12.4 163 31-217 50-266 (412)
84 3ec2_A DNA replication protein 99.2 5.8E-12 2E-16 100.4 3.5 70 25-94 32-112 (180)
85 1tue_A Replication protein E1; 99.2 9.9E-11 3.4E-15 94.7 9.5 62 27-94 54-115 (212)
86 2kjq_A DNAA-related protein; s 99.2 7E-11 2.4E-15 91.6 7.8 59 30-95 35-96 (149)
87 2w58_A DNAI, primosome compone 99.1 7.5E-11 2.6E-15 95.5 5.9 63 32-94 55-127 (202)
88 2fna_A Conserved hypothetical 99.1 3E-09 1E-13 92.8 15.4 155 32-217 31-250 (357)
89 4akg_A Glutathione S-transfera 99.1 3.7E-10 1.3E-14 120.2 11.1 136 30-188 644-793 (2695)
90 1svm_A Large T antigen; AAA+ f 99.0 2.7E-10 9.1E-15 101.2 6.9 121 26-174 164-284 (377)
91 3vkg_A Dynein heavy chain, cyt 99.0 7.1E-10 2.4E-14 118.8 11.2 136 31-188 1304-1469(3245)
92 2qgz_A Helicase loader, putati 99.0 1.9E-10 6.4E-15 99.7 4.8 64 31-94 152-226 (308)
93 2r2a_A Uncharacterized protein 99.0 6.7E-10 2.3E-14 90.1 7.7 119 33-178 7-156 (199)
94 3dzd_A Transcriptional regulat 99.0 7E-09 2.4E-13 92.0 13.8 129 32-189 153-317 (368)
95 3k1j_A LON protease, ATP-depen 99.0 4.3E-09 1.5E-13 99.3 13.0 26 31-56 60-85 (604)
96 2vhj_A Ntpase P4, P4; non- hyd 98.9 6.5E-10 2.2E-14 96.0 5.1 116 27-160 119-242 (331)
97 1ny5_A Transcriptional regulat 98.9 9.3E-09 3.2E-13 91.8 12.3 129 31-188 160-325 (387)
98 3cmw_A Protein RECA, recombina 98.9 1.2E-09 4.2E-14 112.0 6.4 113 28-153 1079-1218(1706)
99 2qen_A Walker-type ATPase; unk 98.9 4.9E-08 1.7E-12 84.9 15.1 157 32-217 32-246 (350)
100 3vkg_A Dynein heavy chain, cyt 98.8 2E-08 6.7E-13 107.9 12.8 141 31-190 604-755 (3245)
101 1u0j_A DNA replication protein 98.7 9.6E-08 3.3E-12 80.5 11.5 59 29-94 102-160 (267)
102 3f8t_A Predicted ATPase involv 98.5 3.6E-08 1.2E-12 89.1 3.1 115 33-179 241-385 (506)
103 1jr3_D DNA polymerase III, del 98.5 7.1E-07 2.4E-11 78.0 11.0 150 30-216 17-184 (343)
104 3cmu_A Protein RECA, recombina 98.4 4.7E-07 1.6E-11 94.2 9.0 111 27-149 1423-1560(2050)
105 1ye8_A Protein THEP1, hypothet 98.3 1.7E-06 5.8E-11 68.7 8.8 27 33-59 2-28 (178)
106 1qhx_A CPT, protein (chloramph 98.1 2.5E-06 8.4E-11 67.1 5.1 34 31-64 3-36 (178)
107 3vaa_A Shikimate kinase, SK; s 98.1 1.8E-06 6.1E-11 69.5 3.9 35 29-63 23-57 (199)
108 3trf_A Shikimate kinase, SK; a 98.1 1.9E-06 6.5E-11 68.2 3.9 33 31-63 5-37 (185)
109 2orw_A Thymidine kinase; TMTK, 98.1 1.9E-06 6.5E-11 68.8 3.3 31 32-62 4-37 (184)
110 2rhm_A Putative kinase; P-loop 98.0 3.8E-06 1.3E-10 66.7 4.9 34 28-61 2-35 (193)
111 3kb2_A SPBC2 prophage-derived 98.0 4.8E-06 1.7E-10 64.8 5.4 31 33-63 3-33 (173)
112 1gvn_B Zeta; postsegregational 98.0 7E-06 2.4E-10 70.1 6.3 34 31-64 33-66 (287)
113 3e1s_A Exodeoxyribonuclease V, 98.0 1.3E-05 4.3E-10 75.0 8.2 34 31-64 204-240 (574)
114 2z43_A DNA repair and recombin 98.0 1.2E-05 4.2E-10 69.7 7.7 41 27-67 103-152 (324)
115 3hr8_A Protein RECA; alpha and 98.0 1.9E-05 6.6E-10 69.3 8.7 70 27-96 57-153 (356)
116 2w0m_A SSO2452; RECA, SSPF, un 98.0 2.3E-05 7.9E-10 63.8 8.6 38 27-64 19-59 (235)
117 1y63_A LMAJ004144AAA protein; 98.0 5E-06 1.7E-10 66.0 4.0 33 31-63 10-43 (184)
118 3iij_A Coilin-interacting nucl 97.9 5.7E-06 2E-10 65.2 4.0 32 31-62 11-42 (180)
119 1via_A Shikimate kinase; struc 97.9 4.9E-06 1.7E-10 65.4 3.4 30 33-62 6-35 (175)
120 2iyv_A Shikimate kinase, SK; t 97.9 5.8E-06 2E-10 65.4 3.7 31 33-63 4-34 (184)
121 1zuh_A Shikimate kinase; alpha 97.9 6.2E-06 2.1E-10 64.2 3.7 32 32-63 8-39 (168)
122 1z6t_A APAF-1, apoptotic prote 97.9 0.00016 5.6E-09 67.4 13.9 44 173-216 284-327 (591)
123 1kag_A SKI, shikimate kinase I 97.9 1E-05 3.5E-10 63.1 4.6 30 32-61 5-34 (173)
124 1zp6_A Hypothetical protein AT 97.9 8.6E-06 2.9E-10 64.7 3.9 37 28-64 6-42 (191)
125 3upu_A ATP-dependent DNA helic 97.8 5.9E-05 2E-09 68.5 9.5 23 33-55 47-69 (459)
126 2p5t_B PEZT; postsegregational 97.8 1.6E-05 5.4E-10 66.5 5.2 38 30-67 31-68 (253)
127 2cdn_A Adenylate kinase; phosp 97.8 1.1E-05 3.7E-10 64.8 4.1 31 32-62 21-51 (201)
128 2ze6_A Isopentenyl transferase 97.8 1.1E-05 3.8E-10 67.5 4.1 32 33-64 3-34 (253)
129 3lw7_A Adenylate kinase relate 97.8 9E-06 3.1E-10 63.2 3.4 29 33-62 3-31 (179)
130 1e6c_A Shikimate kinase; phosp 97.8 9.7E-06 3.3E-10 63.2 3.5 30 33-62 4-33 (173)
131 2c95_A Adenylate kinase 1; tra 97.8 1.2E-05 4E-10 64.1 3.9 33 31-63 9-41 (196)
132 3cmu_A Protein RECA, recombina 97.8 5E-05 1.7E-09 79.4 9.4 70 27-96 1077-1173(2050)
133 1tev_A UMP-CMP kinase; ploop, 97.8 1.1E-05 3.8E-10 64.0 3.7 32 31-62 3-34 (196)
134 1xp8_A RECA protein, recombina 97.8 7.3E-05 2.5E-09 66.0 9.2 69 27-95 70-165 (366)
135 2zr9_A Protein RECA, recombina 97.8 5.1E-05 1.7E-09 66.5 7.9 70 27-96 57-153 (349)
136 3dl0_A Adenylate kinase; phosp 97.8 1.3E-05 4.5E-10 65.0 3.6 30 33-62 2-31 (216)
137 1zd8_A GTP:AMP phosphotransfer 97.8 1.4E-05 4.6E-10 65.6 3.7 32 31-62 7-38 (227)
138 3t61_A Gluconokinase; PSI-biol 97.8 1.7E-05 5.7E-10 63.8 4.0 32 31-62 18-49 (202)
139 3cm0_A Adenylate kinase; ATP-b 97.8 1.8E-05 6E-10 62.5 4.0 31 32-62 5-35 (186)
140 3fb4_A Adenylate kinase; psych 97.8 1.4E-05 4.9E-10 64.7 3.5 29 34-62 3-31 (216)
141 2bwj_A Adenylate kinase 5; pho 97.8 1.5E-05 5.3E-10 63.5 3.6 32 31-62 12-43 (199)
142 2pt5_A Shikimate kinase, SK; a 97.7 1.5E-05 5.2E-10 61.8 3.5 30 33-62 2-31 (168)
143 1ly1_A Polynucleotide kinase; 97.7 1.4E-05 5E-10 62.5 3.4 28 31-58 2-30 (181)
144 1u94_A RECA protein, recombina 97.7 7.2E-05 2.5E-09 65.8 8.1 70 27-96 59-155 (356)
145 1qf9_A UMP/CMP kinase, protein 97.7 1.9E-05 6.3E-10 62.5 4.0 32 31-62 6-37 (194)
146 1aky_A Adenylate kinase; ATP:A 97.7 2.4E-05 8.1E-10 63.8 4.7 31 32-62 5-35 (220)
147 3sfz_A APAF-1, apoptotic pepti 97.7 0.00036 1.2E-08 70.2 14.3 140 31-214 147-325 (1249)
148 3be4_A Adenylate kinase; malar 97.7 1.6E-05 5.4E-10 64.8 3.4 31 32-62 6-36 (217)
149 2i1q_A DNA repair and recombin 97.7 6.4E-05 2.2E-09 65.0 7.5 28 27-54 94-121 (322)
150 2vli_A Antibiotic resistance p 97.7 1.6E-05 5.3E-10 62.6 3.2 29 32-60 6-34 (183)
151 3umf_A Adenylate kinase; rossm 97.7 2.3E-05 8E-10 64.1 4.3 33 28-60 26-58 (217)
152 1knq_A Gluconate kinase; ALFA/ 97.7 2.9E-05 9.9E-10 60.7 4.7 30 32-61 9-38 (175)
153 1nlf_A Regulatory protein REPA 97.7 9.3E-05 3.2E-09 62.6 8.2 29 27-55 26-54 (279)
154 1kht_A Adenylate kinase; phosp 97.7 2.2E-05 7.5E-10 62.1 4.0 25 32-56 4-28 (192)
155 1ukz_A Uridylate kinase; trans 97.7 2.2E-05 7.5E-10 63.0 4.0 31 33-63 17-47 (203)
156 3tlx_A Adenylate kinase 2; str 97.7 2.2E-05 7.5E-10 65.3 3.9 33 30-62 28-60 (243)
157 4eun_A Thermoresistant glucoki 97.7 3.1E-05 1.1E-09 62.1 4.7 30 31-60 29-58 (200)
158 1ak2_A Adenylate kinase isoenz 97.7 3.5E-05 1.2E-09 63.4 4.8 31 32-62 17-47 (233)
159 2cvh_A DNA repair and recombin 97.7 8.8E-05 3E-09 59.9 7.2 40 27-66 16-55 (220)
160 1zak_A Adenylate kinase; ATP:A 97.7 2.5E-05 8.7E-10 63.7 3.8 31 31-61 5-35 (222)
161 3sr0_A Adenylate kinase; phosp 97.7 3.4E-05 1.2E-09 62.6 4.3 28 34-61 3-30 (206)
162 3io5_A Recombination and repai 97.6 0.00011 3.7E-09 63.3 7.4 69 27-96 25-125 (333)
163 2pez_A Bifunctional 3'-phospho 97.6 5.1E-05 1.7E-09 59.6 5.0 33 31-63 5-40 (179)
164 2r8r_A Sensor protein; KDPD, P 97.6 0.00029 1E-08 57.7 9.6 34 32-65 7-43 (228)
165 3crm_A TRNA delta(2)-isopenten 97.6 4E-05 1.4E-09 66.3 4.5 35 31-65 5-39 (323)
166 2pbr_A DTMP kinase, thymidylat 97.6 5E-05 1.7E-09 60.1 4.7 30 34-63 3-35 (195)
167 1e4v_A Adenylate kinase; trans 97.6 4E-05 1.4E-09 62.1 4.2 30 33-62 2-31 (214)
168 2xb4_A Adenylate kinase; ATP-b 97.6 5.1E-05 1.8E-09 62.1 4.2 29 34-62 3-31 (223)
169 2if2_A Dephospho-COA kinase; a 97.6 3.6E-05 1.2E-09 61.8 3.2 30 33-63 3-32 (204)
170 1g5t_A COB(I)alamin adenosyltr 97.6 0.00035 1.2E-08 56.0 8.8 34 32-65 29-65 (196)
171 1cke_A CK, MSSA, protein (cyti 97.6 5.5E-05 1.9E-09 61.6 4.3 30 32-61 6-35 (227)
172 3nwj_A ATSK2; P loop, shikimat 97.6 5E-05 1.7E-09 63.5 4.0 33 31-63 48-80 (250)
173 1nks_A Adenylate kinase; therm 97.5 3.2E-05 1.1E-09 61.1 2.7 24 33-56 3-26 (194)
174 2jaq_A Deoxyguanosine kinase; 97.5 5.3E-05 1.8E-09 60.5 4.0 29 33-61 2-30 (205)
175 3uie_A Adenylyl-sulfate kinase 97.5 8.7E-05 3E-09 59.5 5.2 35 29-63 23-60 (200)
176 2z0h_A DTMP kinase, thymidylat 97.5 7.3E-05 2.5E-09 59.4 4.7 31 34-64 3-36 (197)
177 1n0w_A DNA repair protein RAD5 97.5 0.00014 4.7E-09 59.7 6.5 40 27-66 20-68 (243)
178 2bbw_A Adenylate kinase 4, AK4 97.5 6.2E-05 2.1E-09 62.4 4.4 30 31-60 27-56 (246)
179 2v54_A DTMP kinase, thymidylat 97.5 8.1E-05 2.8E-09 59.5 4.7 34 31-64 4-38 (204)
180 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 9.5E-05 3.2E-09 62.0 5.1 33 32-64 5-40 (260)
181 2a5y_B CED-4; apoptosis; HET: 97.5 0.0034 1.2E-07 58.1 15.9 49 168-216 286-336 (549)
182 1jjv_A Dephospho-COA kinase; P 97.5 7.3E-05 2.5E-09 60.1 4.1 29 33-62 4-32 (206)
183 2grj_A Dephospho-COA kinase; T 97.5 6.2E-05 2.1E-09 60.3 3.5 31 33-63 14-44 (192)
184 3r20_A Cytidylate kinase; stru 97.5 9.5E-05 3.2E-09 61.1 4.6 32 31-62 9-40 (233)
185 3ake_A Cytidylate kinase; CMP 97.5 8.9E-05 3.1E-09 59.4 4.3 31 33-63 4-34 (208)
186 2iut_A DNA translocase FTSK; n 97.5 0.0011 3.7E-08 61.5 12.0 41 142-184 377-419 (574)
187 1v5w_A DMC1, meiotic recombina 97.5 0.00024 8.3E-09 62.0 7.4 41 27-67 118-167 (343)
188 2b8t_A Thymidine kinase; deoxy 97.5 0.00016 5.5E-09 59.3 5.8 30 33-62 14-46 (223)
189 2c9o_A RUVB-like 1; hexameric 97.4 0.00015 5.3E-09 65.7 6.1 101 83-217 296-410 (456)
190 3jvv_A Twitching mobility prot 97.4 0.00031 1E-08 61.7 7.5 64 29-92 121-206 (356)
191 1kgd_A CASK, peripheral plasma 97.4 0.0001 3.4E-09 58.2 4.0 26 31-56 5-30 (180)
192 4a74_A DNA repair and recombin 97.4 0.00028 9.4E-09 57.3 6.6 29 27-55 21-49 (231)
193 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.6E-09 59.2 3.9 29 28-56 9-37 (204)
194 2wwf_A Thymidilate kinase, put 97.4 5E-05 1.7E-09 61.1 2.0 28 31-58 10-37 (212)
195 1rz3_A Hypothetical protein rb 97.4 0.00035 1.2E-08 56.0 7.0 38 30-67 21-61 (201)
196 2plr_A DTMP kinase, probable t 97.4 0.0001 3.6E-09 59.1 3.9 27 32-58 5-31 (213)
197 3cmw_A Protein RECA, recombina 97.4 0.00024 8.1E-09 73.5 7.2 70 27-96 728-824 (1706)
198 1uf9_A TT1252 protein; P-loop, 97.4 9.4E-05 3.2E-09 59.0 3.5 31 32-63 9-39 (203)
199 4e22_A Cytidylate kinase; P-lo 97.4 0.00017 6E-09 60.1 5.0 30 32-61 28-57 (252)
200 3a8t_A Adenylate isopentenyltr 97.4 0.00012 4.2E-09 63.5 4.1 36 32-67 41-76 (339)
201 1w4r_A Thymidine kinase; type 97.4 0.00045 1.5E-08 55.2 7.0 63 32-94 21-103 (195)
202 3foz_A TRNA delta(2)-isopenten 97.4 0.00015 5.2E-09 62.2 4.5 35 31-65 10-44 (316)
203 2dr3_A UPF0273 protein PH0284; 97.3 0.00019 6.4E-09 59.0 4.9 39 27-65 19-60 (247)
204 3c8u_A Fructokinase; YP_612366 97.3 0.00021 7.1E-09 57.6 5.1 27 30-56 21-47 (208)
205 4b3f_X DNA-binding protein smu 97.3 0.0004 1.4E-08 65.8 7.7 33 33-65 207-242 (646)
206 2qt1_A Nicotinamide riboside k 97.3 0.0001 3.5E-09 59.3 3.1 32 31-62 21-53 (207)
207 2ius_A DNA translocase FTSK; n 97.3 0.0014 4.9E-08 60.1 10.8 41 143-185 332-374 (512)
208 1nn5_A Similar to deoxythymidy 97.3 7.1E-05 2.4E-09 60.3 1.9 26 31-56 9-34 (215)
209 2bdt_A BH3686; alpha-beta prot 97.3 0.00017 5.8E-09 57.1 4.1 25 33-57 4-28 (189)
210 2ga8_A Hypothetical 39.9 kDa p 97.3 9.2E-05 3.1E-09 64.8 2.7 30 32-61 25-54 (359)
211 1q3t_A Cytidylate kinase; nucl 97.3 0.00022 7.7E-09 58.6 4.9 32 31-62 16-47 (236)
212 3zvl_A Bifunctional polynucleo 97.3 0.00018 6E-09 64.6 4.5 30 32-61 259-288 (416)
213 1uj2_A Uridine-cytidine kinase 97.3 0.00023 8E-09 59.2 4.9 38 31-68 22-67 (252)
214 1vht_A Dephospho-COA kinase; s 97.3 0.00023 7.7E-09 57.7 4.6 31 32-63 5-35 (218)
215 2j41_A Guanylate kinase; GMP, 97.3 0.00015 5E-09 58.0 3.4 27 29-55 4-30 (207)
216 2h92_A Cytidylate kinase; ross 97.3 0.00023 8E-09 57.6 4.6 32 32-63 4-35 (219)
217 1pzn_A RAD51, DNA repair and r 97.3 0.00042 1.4E-08 60.7 6.5 40 27-66 127-175 (349)
218 2zts_A Putative uncharacterize 97.2 0.00029 1E-08 57.8 5.1 39 27-65 26-68 (251)
219 1kao_A RAP2A; GTP-binding prot 97.2 0.0011 3.7E-08 50.3 7.9 23 32-54 4-26 (167)
220 3tau_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 58.1 3.5 28 30-57 7-34 (208)
221 2fz4_A DNA repair protein RAD2 97.2 0.00059 2E-08 56.3 6.6 33 33-65 110-142 (237)
222 3d3q_A TRNA delta(2)-isopenten 97.2 0.00019 6.5E-09 62.5 3.7 32 32-63 8-39 (340)
223 2f6r_A COA synthase, bifunctio 97.2 0.00019 6.5E-09 60.9 3.6 29 33-62 77-105 (281)
224 1m7g_A Adenylylsulfate kinase; 97.2 0.0004 1.4E-08 56.1 5.3 36 28-63 22-61 (211)
225 1ex7_A Guanylate kinase; subst 97.2 0.00029 9.9E-09 56.1 4.4 28 32-59 2-29 (186)
226 3tr0_A Guanylate kinase, GMP k 97.2 0.00024 8.1E-09 56.8 3.9 27 30-56 6-32 (205)
227 2qmh_A HPR kinase/phosphorylas 97.2 0.00021 7.1E-09 57.4 3.5 32 31-63 34-65 (205)
228 2yvu_A Probable adenylyl-sulfa 97.2 0.00025 8.6E-09 55.9 3.9 26 31-56 13-38 (186)
229 2ehv_A Hypothetical protein PH 97.2 0.00017 6E-09 59.3 3.0 26 27-52 26-51 (251)
230 1ltq_A Polynucleotide kinase; 97.2 0.00023 7.7E-09 60.7 3.8 29 32-60 3-32 (301)
231 1htw_A HI0065; nucleotide-bind 97.2 0.00036 1.2E-08 54.0 4.4 29 27-55 29-57 (158)
232 3exa_A TRNA delta(2)-isopenten 97.1 0.00025 8.4E-09 61.0 3.6 33 32-64 4-36 (322)
233 3b9q_A Chloroplast SRP recepto 97.1 0.00031 1.1E-08 60.3 4.1 25 31-55 100-124 (302)
234 1lvg_A Guanylate kinase, GMP k 97.1 0.00026 9.1E-09 56.7 3.4 27 30-56 3-29 (198)
235 2v9p_A Replication protein E1; 97.1 0.00036 1.2E-08 59.9 4.3 34 26-59 121-154 (305)
236 2ce2_X GTPase HRAS; signaling 97.1 0.0015 5.1E-08 49.4 7.4 23 33-55 5-27 (166)
237 3fdi_A Uncharacterized protein 97.1 0.00038 1.3E-08 56.0 4.0 29 33-61 8-36 (201)
238 3kw6_A 26S protease regulatory 97.1 0.00043 1.5E-08 46.8 3.7 45 173-217 1-46 (78)
239 1z6g_A Guanylate kinase; struc 97.1 0.00034 1.2E-08 57.0 3.7 27 29-55 21-47 (218)
240 3eph_A TRNA isopentenyltransfe 97.1 0.00037 1.3E-08 61.9 4.1 34 31-64 2-35 (409)
241 3a00_A Guanylate kinase, GMP k 97.1 0.00035 1.2E-08 55.3 3.6 25 32-56 2-26 (186)
242 3lda_A DNA repair protein RAD5 97.1 0.00096 3.3E-08 59.5 6.7 40 27-66 174-222 (400)
243 1u8z_A RAS-related protein RAL 97.1 0.0017 5.7E-08 49.3 7.3 23 32-54 5-27 (168)
244 3asz_A Uridine kinase; cytidin 97.0 0.00038 1.3E-08 56.0 3.7 26 31-56 6-31 (211)
245 1c1y_A RAS-related protein RAP 97.0 0.0017 5.9E-08 49.3 7.3 22 33-54 5-26 (167)
246 2px0_A Flagellar biosynthesis 97.0 0.0021 7.3E-08 54.9 8.5 36 31-66 105-144 (296)
247 4dsu_A GTPase KRAS, isoform 2B 97.0 0.0015 5.1E-08 50.9 7.0 23 33-55 6-28 (189)
248 1c9k_A COBU, adenosylcobinamid 97.0 0.0005 1.7E-08 54.3 4.0 33 34-67 2-34 (180)
249 2og2_A Putative signal recogni 97.0 0.00038 1.3E-08 61.2 3.6 26 30-55 156-181 (359)
250 2a9k_A RAS-related protein RAL 97.0 0.0022 7.7E-08 49.7 7.7 23 32-54 19-41 (187)
251 3q72_A GTP-binding protein RAD 97.0 0.00075 2.6E-08 51.5 4.8 21 33-53 4-24 (166)
252 1g41_A Heat shock protein HSLU 97.0 0.001 3.4E-08 60.0 6.2 94 75-185 243-346 (444)
253 1r8s_A ADP-ribosylation factor 97.0 0.0044 1.5E-07 47.0 9.1 23 33-55 2-24 (164)
254 4gp7_A Metallophosphoesterase; 97.0 0.00024 8.3E-09 55.5 1.9 23 29-51 7-29 (171)
255 1vma_A Cell division protein F 97.0 0.00058 2E-08 58.7 4.4 35 31-65 104-141 (306)
256 2eyu_A Twitching motility prot 97.0 0.00059 2E-08 57.3 4.3 34 22-55 16-49 (261)
257 1s96_A Guanylate kinase, GMP k 97.0 0.00051 1.7E-08 56.1 3.8 29 28-56 13-41 (219)
258 2bov_A RAla, RAS-related prote 97.0 0.0025 8.7E-08 50.4 7.9 23 32-54 15-37 (206)
259 3bh0_A DNAB-like replicative h 97.0 0.0009 3.1E-08 57.6 5.5 39 27-65 64-105 (315)
260 1znw_A Guanylate kinase, GMP k 97.0 0.00053 1.8E-08 55.2 3.9 29 28-56 17-45 (207)
261 3ney_A 55 kDa erythrocyte memb 97.0 0.00056 1.9E-08 54.9 3.9 26 31-56 19-44 (197)
262 1cr0_A DNA primase/helicase; R 96.9 0.00049 1.7E-08 58.5 3.6 39 26-64 30-72 (296)
263 2yhs_A FTSY, cell division pro 96.9 0.00041 1.4E-08 63.3 3.2 25 31-55 293-317 (503)
264 1odf_A YGR205W, hypothetical 3 96.9 0.00071 2.4E-08 57.7 4.6 39 30-68 30-74 (290)
265 1vt4_I APAF-1 related killer D 96.9 0.0061 2.1E-07 60.4 11.6 36 31-66 150-191 (1221)
266 2atv_A RERG, RAS-like estrogen 96.9 0.003 1E-07 49.8 8.0 25 30-54 27-51 (196)
267 3kl4_A SRP54, signal recogniti 96.9 0.00068 2.3E-08 61.0 4.2 35 31-65 97-134 (433)
268 1sky_E F1-ATPase, F1-ATP synth 96.9 0.011 3.8E-07 53.5 12.1 24 32-55 152-175 (473)
269 2jeo_A Uridine-cytidine kinase 96.9 0.00069 2.4E-08 56.0 3.9 27 32-58 26-52 (245)
270 3e70_C DPA, signal recognition 96.9 0.0014 5E-08 56.7 6.0 26 30-55 128-153 (328)
271 3kkq_A RAS-related protein M-R 96.8 0.0022 7.6E-08 49.8 6.5 22 33-54 20-41 (183)
272 2nzj_A GTP-binding protein REM 96.8 0.0015 5E-08 50.2 5.4 23 32-54 5-27 (175)
273 3gmt_A Adenylate kinase; ssgci 96.8 0.0007 2.4E-08 55.7 3.6 29 34-62 11-39 (230)
274 3dm5_A SRP54, signal recogniti 96.8 0.00094 3.2E-08 60.2 4.8 36 31-66 100-138 (443)
275 1x6v_B Bifunctional 3'-phospho 96.8 0.00093 3.2E-08 62.8 4.7 32 32-63 53-87 (630)
276 2ewv_A Twitching motility prot 96.8 0.001 3.4E-08 58.8 4.6 33 23-55 128-160 (372)
277 1zu4_A FTSY; GTPase, signal re 96.8 0.0011 3.9E-08 57.2 4.7 37 30-66 104-143 (320)
278 2v3c_C SRP54, signal recogniti 96.8 0.0017 5.7E-08 58.5 5.9 65 31-95 99-193 (432)
279 1fzq_A ADP-ribosylation factor 96.8 0.0069 2.3E-07 47.2 8.9 24 31-54 16-39 (181)
280 2gxq_A Heat resistant RNA depe 96.8 0.0034 1.2E-07 49.9 7.2 18 31-48 38-55 (207)
281 3b6e_A Interferon-induced heli 96.8 0.0014 4.8E-08 52.4 4.8 23 32-54 49-71 (216)
282 1gtv_A TMK, thymidylate kinase 96.8 0.00032 1.1E-08 56.4 1.0 24 33-56 2-25 (214)
283 1qde_A EIF4A, translation init 96.7 0.0065 2.2E-07 49.0 8.8 17 31-47 51-67 (224)
284 3lnc_A Guanylate kinase, GMP k 96.7 0.00043 1.5E-08 56.6 1.7 26 30-55 26-52 (231)
285 1xx6_A Thymidine kinase; NESG, 96.7 0.002 6.9E-08 51.4 5.5 63 32-94 9-93 (191)
286 3q85_A GTP-binding protein REM 96.7 0.0024 8.2E-08 48.8 5.8 21 33-53 4-24 (169)
287 1x3s_A RAS-related protein RAB 96.7 0.0029 9.8E-08 49.5 6.4 23 32-54 16-38 (195)
288 2q6t_A DNAB replication FORK h 96.7 0.0017 5.9E-08 58.6 5.6 39 27-65 196-238 (444)
289 3hdt_A Putative kinase; struct 96.7 0.0011 3.6E-08 54.4 3.8 29 33-61 16-44 (223)
290 4eaq_A DTMP kinase, thymidylat 96.7 0.0011 3.8E-08 54.3 4.0 31 32-62 27-59 (229)
291 3con_A GTPase NRAS; structural 96.7 0.0022 7.4E-08 50.2 5.5 23 33-55 23-45 (190)
292 2r6a_A DNAB helicase, replicat 96.7 0.0018 6E-08 58.7 5.6 39 27-65 199-241 (454)
293 2b6h_A ADP-ribosylation factor 96.7 0.0035 1.2E-07 49.4 6.8 23 31-53 29-51 (192)
294 2z0m_A 337AA long hypothetical 96.7 0.0036 1.2E-07 53.4 7.3 33 31-63 31-63 (337)
295 2gk6_A Regulator of nonsense t 96.7 0.0015 5.3E-08 61.5 5.4 23 33-55 197-219 (624)
296 2fn4_A P23, RAS-related protei 96.7 0.0034 1.2E-07 48.3 6.5 23 32-54 10-32 (181)
297 3tqf_A HPR(Ser) kinase; transf 96.7 0.0013 4.6E-08 51.5 4.0 28 31-59 16-43 (181)
298 3bc1_A RAS-related protein RAB 96.7 0.003 1E-07 49.2 6.2 23 32-54 12-34 (195)
299 1z0j_A RAB-22, RAS-related pro 96.7 0.003 1E-07 48.1 5.9 24 32-55 7-30 (170)
300 1a7j_A Phosphoribulokinase; tr 96.6 0.00071 2.4E-08 57.6 2.2 36 33-68 7-45 (290)
301 2i3b_A HCR-ntpase, human cance 96.6 0.0012 4E-08 52.6 3.3 23 33-55 3-25 (189)
302 4a1f_A DNAB helicase, replicat 96.6 0.0024 8.1E-08 55.6 5.3 39 27-65 42-83 (338)
303 1f6b_A SAR1; gtpases, N-termin 96.6 0.0033 1.1E-07 49.9 5.8 31 23-53 16-47 (198)
304 1zd9_A ADP-ribosylation factor 96.6 0.0057 1.9E-07 47.9 7.2 22 33-54 24-45 (188)
305 1ek0_A Protein (GTP-binding pr 96.6 0.0037 1.3E-07 47.5 5.9 24 32-55 4-27 (170)
306 1z06_A RAS-related protein RAB 96.5 0.0043 1.5E-07 48.5 6.1 22 33-54 22-43 (189)
307 3tif_A Uncharacterized ABC tra 96.5 0.0012 3.9E-08 54.5 2.7 28 29-56 29-56 (235)
308 1np6_A Molybdopterin-guanine d 96.5 0.0018 6.3E-08 50.8 3.7 25 31-55 6-30 (174)
309 1zj6_A ADP-ribosylation factor 96.5 0.0086 2.9E-07 46.7 7.7 23 31-53 16-38 (187)
310 3aez_A Pantothenate kinase; tr 96.5 0.0018 6.1E-08 55.8 3.9 27 30-56 89-115 (312)
311 2krk_A 26S protease regulatory 96.5 0.0044 1.5E-07 42.7 5.2 47 171-217 7-54 (86)
312 2oil_A CATX-8, RAS-related pro 96.5 0.0058 2E-07 47.9 6.6 22 33-54 27-48 (193)
313 1rj9_A FTSY, signal recognitio 96.5 0.0019 6.4E-08 55.4 3.9 25 31-55 102-126 (304)
314 2cbz_A Multidrug resistance-as 96.5 0.0013 4.3E-08 54.4 2.7 27 29-55 29-55 (237)
315 3bgw_A DNAB-like replicative h 96.5 0.0028 9.4E-08 57.3 5.2 40 27-66 193-235 (444)
316 1r2q_A RAS-related protein RAB 96.5 0.005 1.7E-07 46.8 6.0 22 33-54 8-29 (170)
317 3tqc_A Pantothenate kinase; bi 96.5 0.01 3.4E-07 51.2 8.4 36 33-68 94-134 (321)
318 3oes_A GTPase rhebl1; small GT 96.4 0.0023 7.8E-08 50.8 4.1 24 32-55 25-48 (201)
319 2ged_A SR-beta, signal recogni 96.4 0.0038 1.3E-07 48.9 5.3 26 30-55 47-72 (193)
320 3kta_A Chromosome segregation 96.4 0.002 7E-08 50.3 3.7 25 33-57 28-52 (182)
321 2wjy_A Regulator of nonsense t 96.4 0.0028 9.7E-08 61.4 5.4 23 33-55 373-395 (800)
322 2axn_A 6-phosphofructo-2-kinas 96.4 0.0029 9.8E-08 58.4 5.2 25 32-56 36-60 (520)
323 2pcj_A ABC transporter, lipopr 96.4 0.0011 3.7E-08 54.3 2.1 27 30-56 29-55 (224)
324 3thx_B DNA mismatch repair pro 96.4 0.0034 1.2E-07 61.6 5.9 23 31-53 673-695 (918)
325 1z0f_A RAB14, member RAS oncog 96.4 0.0088 3E-07 45.8 7.3 24 32-55 16-39 (179)
326 2efe_B Small GTP-binding prote 96.4 0.0063 2.1E-07 46.9 6.4 22 33-54 14-35 (181)
327 2p5s_A RAS and EF-hand domain 96.4 0.0052 1.8E-07 48.6 6.0 24 31-54 28-51 (199)
328 2erx_A GTP-binding protein DI- 96.4 0.0046 1.6E-07 47.0 5.5 22 33-54 5-26 (172)
329 1wb9_A DNA mismatch repair pro 96.4 0.007 2.4E-07 58.6 7.8 23 32-54 608-630 (800)
330 3t1o_A Gliding protein MGLA; G 96.4 0.014 4.9E-07 45.4 8.5 23 33-55 16-38 (198)
331 1m2o_B GTP-binding protein SAR 96.4 0.0044 1.5E-07 48.7 5.4 22 32-53 24-45 (190)
332 1m8p_A Sulfate adenylyltransfe 96.4 0.0026 8.7E-08 59.4 4.5 31 33-63 398-432 (573)
333 1sq5_A Pantothenate kinase; P- 96.4 0.0035 1.2E-07 53.7 5.1 36 32-67 81-121 (308)
334 2h57_A ADP-ribosylation factor 96.4 0.0036 1.2E-07 49.0 4.8 23 33-55 23-45 (190)
335 3tkl_A RAS-related protein RAB 96.4 0.0067 2.3E-07 47.5 6.3 24 32-55 17-40 (196)
336 4i1u_A Dephospho-COA kinase; s 96.3 0.0023 7.8E-08 51.8 3.5 31 33-64 11-41 (210)
337 2onk_A Molybdate/tungstate ABC 96.3 0.002 6.7E-08 53.3 3.1 27 28-55 22-48 (240)
338 1xjc_A MOBB protein homolog; s 96.3 0.0023 7.8E-08 50.0 3.3 32 32-63 5-39 (169)
339 1b0u_A Histidine permease; ABC 96.3 0.0017 5.7E-08 54.5 2.7 27 30-56 31-57 (262)
340 1mv5_A LMRA, multidrug resista 96.3 0.0016 5.5E-08 53.9 2.6 27 29-55 26-52 (243)
341 3t5g_A GTP-binding protein RHE 96.3 0.0026 9E-08 49.2 3.6 22 32-53 7-28 (181)
342 2ocp_A DGK, deoxyguanosine kin 96.3 0.003 1E-07 51.9 4.1 25 32-56 3-27 (241)
343 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0015 5.1E-08 57.3 2.3 25 31-55 30-54 (359)
344 3ice_A Transcription terminati 96.3 0.022 7.4E-07 50.4 9.6 25 31-55 174-198 (422)
345 1g6h_A High-affinity branched- 96.3 0.0012 4.3E-08 55.1 1.7 25 31-55 33-57 (257)
346 2ffh_A Protein (FFH); SRP54, s 96.3 0.0055 1.9E-07 55.0 5.9 35 31-65 98-135 (425)
347 1sgw_A Putative ABC transporte 96.3 0.0016 5.4E-08 53.0 2.2 27 30-56 34-60 (214)
348 2zu0_C Probable ATP-dependent 96.3 0.0022 7.7E-08 53.8 3.2 25 30-54 45-69 (267)
349 2ghi_A Transport protein; mult 96.3 0.0019 6.5E-08 54.1 2.7 26 30-55 45-70 (260)
350 1p9r_A General secretion pathw 96.3 0.0039 1.3E-07 55.9 4.8 25 32-56 168-192 (418)
351 2olj_A Amino acid ABC transpor 96.2 0.002 6.7E-08 54.1 2.7 27 30-56 49-75 (263)
352 2pze_A Cystic fibrosis transme 96.2 0.0017 5.9E-08 53.2 2.3 26 30-55 33-58 (229)
353 2ff7_A Alpha-hemolysin translo 96.2 0.0017 6E-08 53.9 2.3 26 30-55 34-59 (247)
354 3thx_A DNA mismatch repair pro 96.2 0.0068 2.3E-07 59.6 6.8 21 32-52 663-683 (934)
355 3b85_A Phosphate starvation-in 96.2 0.0019 6.6E-08 52.2 2.5 24 31-54 22-45 (208)
356 2ixe_A Antigen peptide transpo 96.2 0.002 6.8E-08 54.3 2.7 27 30-56 44-70 (271)
357 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0022 7.4E-08 53.4 2.9 25 30-54 28-52 (250)
358 1p5z_B DCK, deoxycytidine kina 96.2 0.0013 4.4E-08 55.0 1.4 25 32-56 25-49 (263)
359 1q57_A DNA primase/helicase; d 96.2 0.0035 1.2E-07 57.4 4.5 40 27-66 238-281 (503)
360 3gfo_A Cobalt import ATP-bindi 96.2 0.0014 4.6E-08 55.5 1.5 25 31-55 34-58 (275)
361 1ji0_A ABC transporter; ATP bi 96.2 0.0019 6.5E-08 53.4 2.3 27 30-56 31-57 (240)
362 2yyz_A Sugar ABC transporter, 96.2 0.0019 6.6E-08 56.6 2.5 26 30-55 28-53 (359)
363 2it1_A 362AA long hypothetical 96.2 0.0019 6.6E-08 56.7 2.4 25 31-55 29-53 (362)
364 2j37_W Signal recognition part 96.2 0.0031 1.1E-07 57.8 3.9 34 31-64 101-137 (504)
365 1vpl_A ABC transporter, ATP-bi 96.2 0.0022 7.6E-08 53.6 2.7 26 30-55 40-65 (256)
366 2gza_A Type IV secretion syste 96.2 0.0015 5.2E-08 57.3 1.7 29 28-56 172-200 (361)
367 2xzl_A ATP-dependent helicase 96.2 0.0041 1.4E-07 60.3 4.9 33 33-65 377-413 (802)
368 1hv8_A Putative ATP-dependent 96.2 0.015 5.1E-07 50.0 8.1 22 32-53 45-66 (367)
369 2yz2_A Putative ABC transporte 96.2 0.0023 7.8E-08 53.8 2.7 26 30-55 32-57 (266)
370 2xxa_A Signal recognition part 96.2 0.0036 1.2E-07 56.3 4.2 36 31-66 100-139 (433)
371 2qi9_C Vitamin B12 import ATP- 96.2 0.002 6.8E-08 53.6 2.3 27 30-56 25-51 (249)
372 3iuy_A Probable ATP-dependent 96.2 0.024 8.1E-07 45.8 8.8 18 31-48 57-74 (228)
373 3cbq_A GTP-binding protein REM 96.2 0.0082 2.8E-07 47.5 5.9 21 33-53 25-45 (195)
374 1z47_A CYSA, putative ABC-tran 96.2 0.0018 6.2E-08 56.7 2.1 25 31-55 41-65 (355)
375 1v43_A Sugar-binding transport 96.2 0.0021 7E-08 56.7 2.4 25 31-55 37-61 (372)
376 4edh_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 51.1 3.3 31 33-63 8-41 (213)
377 3rlf_A Maltose/maltodextrin im 96.1 0.0021 7.1E-08 56.8 2.4 25 31-55 29-53 (381)
378 2pl3_A Probable ATP-dependent 96.1 0.024 8.3E-07 46.0 8.8 18 31-48 62-79 (236)
379 2f9l_A RAB11B, member RAS onco 96.1 0.0031 1E-07 50.0 3.2 22 33-54 7-28 (199)
380 1oix_A RAS-related protein RAB 96.1 0.0029 9.8E-08 49.9 3.0 23 33-55 31-53 (191)
381 2f7s_A C25KG, RAS-related prot 96.1 0.0065 2.2E-07 48.6 5.2 22 33-54 27-48 (217)
382 1bif_A 6-phosphofructo-2-kinas 96.1 0.0017 5.8E-08 59.1 1.8 26 31-56 39-64 (469)
383 3sop_A Neuronal-specific septi 96.1 0.003 1E-07 53.1 3.1 23 33-55 4-26 (270)
384 3fe2_A Probable ATP-dependent 96.1 0.034 1.1E-06 45.4 9.5 18 31-48 66-83 (242)
385 3v9p_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 50.9 3.9 23 33-55 27-49 (227)
386 2nq2_C Hypothetical ABC transp 96.1 0.0023 7.7E-08 53.4 2.3 26 30-55 30-55 (253)
387 2ihy_A ABC transporter, ATP-bi 96.1 0.0023 7.8E-08 54.2 2.3 25 31-55 47-71 (279)
388 4g1u_C Hemin import ATP-bindin 96.1 0.0023 8E-08 53.7 2.4 26 30-55 36-61 (266)
389 1g29_1 MALK, maltose transport 96.1 0.0021 7.1E-08 56.7 2.1 25 31-55 29-53 (372)
390 1j8m_F SRP54, signal recogniti 96.1 0.0043 1.5E-07 53.0 4.0 37 31-67 98-137 (297)
391 2h17_A ADP-ribosylation factor 96.1 0.0065 2.2E-07 47.1 4.8 22 33-54 23-44 (181)
392 1vec_A ATP-dependent RNA helic 96.1 0.02 6.9E-07 45.3 7.8 19 31-49 40-58 (206)
393 2oap_1 GSPE-2, type II secreti 96.1 0.0027 9.4E-08 58.3 2.9 27 30-56 259-285 (511)
394 2xau_A PRE-mRNA-splicing facto 96.1 0.013 4.6E-07 56.5 7.9 23 32-54 110-132 (773)
395 1nrj_B SR-beta, signal recogni 96.0 0.0044 1.5E-07 49.6 3.8 25 31-55 12-36 (218)
396 4f4c_A Multidrug resistance pr 96.0 0.013 4.4E-07 59.9 8.0 26 31-56 444-469 (1321)
397 1lw7_A Transcriptional regulat 96.0 0.0035 1.2E-07 54.9 3.4 28 31-58 170-197 (365)
398 1g8f_A Sulfate adenylyltransfe 96.0 0.0032 1.1E-07 57.8 3.2 26 32-57 396-421 (511)
399 1z2a_A RAS-related protein RAB 96.0 0.0038 1.3E-07 47.4 3.2 23 32-54 6-28 (168)
400 3dz8_A RAS-related protein RAB 96.0 0.0076 2.6E-07 47.2 5.0 23 33-55 25-47 (191)
401 2j9r_A Thymidine kinase; TK1, 96.0 0.0062 2.1E-07 49.3 4.4 31 34-64 31-64 (214)
402 3d31_A Sulfate/molybdate ABC t 96.0 0.0017 5.8E-08 56.8 1.2 26 30-55 25-50 (348)
403 2dyk_A GTP-binding protein; GT 96.0 0.004 1.4E-07 46.9 3.2 22 33-54 3-24 (161)
404 1ls1_A Signal recognition part 96.0 0.01 3.5E-07 50.5 5.9 35 31-65 98-135 (295)
405 2gf0_A GTP-binding protein DI- 96.0 0.011 3.8E-07 46.2 5.8 23 32-54 9-31 (199)
406 3gd7_A Fusion complex of cysti 96.0 0.0026 9E-08 56.4 2.3 25 31-55 47-71 (390)
407 4dkx_A RAS-related protein RAB 96.0 0.013 4.3E-07 47.5 6.1 22 33-54 15-36 (216)
408 1w36_D RECD, exodeoxyribonucle 96.0 0.0039 1.3E-07 58.6 3.5 25 31-55 164-188 (608)
409 3tmk_A Thymidylate kinase; pho 96.0 0.0062 2.1E-07 49.5 4.3 29 32-60 6-34 (216)
410 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0016 5.5E-08 56.5 0.7 64 30-93 170-251 (330)
411 2wji_A Ferrous iron transport 95.9 0.0038 1.3E-07 47.8 2.8 22 33-54 5-26 (165)
412 3cr8_A Sulfate adenylyltranfer 95.9 0.0025 8.4E-08 59.2 1.9 26 31-56 369-394 (552)
413 2hup_A RAS-related protein RAB 95.9 0.017 5.9E-07 45.7 6.8 22 33-54 31-52 (201)
414 2dpy_A FLII, flagellum-specifi 95.9 0.0093 3.2E-07 53.7 5.7 36 22-58 147-184 (438)
415 2qm8_A GTPase/ATPase; G protei 95.9 0.0077 2.6E-07 52.3 4.9 26 30-55 54-79 (337)
416 1tf7_A KAIC; homohexamer, hexa 95.9 0.0038 1.3E-07 57.5 3.1 38 27-64 277-317 (525)
417 3bor_A Human initiation factor 95.9 0.012 4.2E-07 48.0 5.9 18 31-48 67-84 (237)
418 3ly5_A ATP-dependent RNA helic 95.9 0.027 9.2E-07 46.8 8.1 18 32-49 92-109 (262)
419 2zej_A Dardarin, leucine-rich 95.9 0.0033 1.1E-07 49.2 2.3 21 33-53 4-24 (184)
420 2bbs_A Cystic fibrosis transme 95.9 0.0034 1.2E-07 53.4 2.5 24 32-55 65-88 (290)
421 2f1r_A Molybdopterin-guanine d 95.9 0.0022 7.4E-08 50.2 1.2 24 33-56 4-27 (171)
422 2orv_A Thymidine kinase; TP4A 95.9 0.052 1.8E-06 44.4 9.4 62 33-94 21-102 (234)
423 2pjz_A Hypothetical protein ST 95.8 0.0038 1.3E-07 52.3 2.6 25 31-55 30-54 (263)
424 3llu_A RAS-related GTP-binding 95.8 0.019 6.6E-07 45.1 6.6 23 33-55 22-44 (196)
425 3ber_A Probable ATP-dependent 95.8 0.041 1.4E-06 45.3 8.8 18 31-48 80-97 (249)
426 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0049 1.7E-07 55.9 3.4 29 27-55 134-162 (460)
427 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0055 1.9E-07 47.0 3.2 22 33-54 9-30 (177)
428 1upt_A ARL1, ADP-ribosylation 95.8 0.0075 2.6E-07 45.9 3.9 24 31-54 7-30 (171)
429 1g16_A RAS-related protein SEC 95.8 0.0054 1.8E-07 46.6 3.0 23 32-54 4-26 (170)
430 1oxx_K GLCV, glucose, ABC tran 95.8 0.0025 8.7E-08 55.8 1.3 26 30-55 30-55 (353)
431 1tf7_A KAIC; homohexamer, hexa 95.8 0.0045 1.5E-07 57.1 3.0 39 27-65 35-77 (525)
432 2il1_A RAB12; G-protein, GDP, 95.8 0.0091 3.1E-07 46.9 4.4 22 33-54 28-49 (192)
433 2www_A Methylmalonic aciduria 95.8 0.021 7.3E-07 49.7 7.2 24 32-55 75-98 (349)
434 1z08_A RAS-related protein RAB 95.8 0.0058 2E-07 46.5 3.2 23 32-54 7-29 (170)
435 2obl_A ESCN; ATPase, hydrolase 95.8 0.0099 3.4E-07 51.9 5.0 28 32-59 72-99 (347)
436 3tui_C Methionine import ATP-b 95.7 0.004 1.4E-07 54.7 2.4 25 31-55 54-78 (366)
437 1ky3_A GTP-binding protein YPT 95.7 0.0058 2E-07 47.0 3.2 24 32-55 9-32 (182)
438 2qag_B Septin-6, protein NEDD5 95.7 0.0061 2.1E-07 54.6 3.7 28 27-54 36-65 (427)
439 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0065 2.2E-07 46.2 3.3 23 33-55 25-47 (149)
440 2wjg_A FEOB, ferrous iron tran 95.7 0.0056 1.9E-07 47.6 3.0 23 32-54 8-30 (188)
441 2lkc_A Translation initiation 95.7 0.0075 2.6E-07 46.3 3.7 24 31-54 8-31 (178)
442 3lv8_A DTMP kinase, thymidylat 95.7 0.0068 2.3E-07 49.9 3.6 24 32-55 28-51 (236)
443 2hxs_A RAB-26, RAS-related pro 95.7 0.0064 2.2E-07 46.7 3.1 23 32-54 7-29 (178)
444 3p32_A Probable GTPase RV1496/ 95.7 0.012 4E-07 51.5 5.1 33 31-63 79-114 (355)
445 3ld9_A DTMP kinase, thymidylat 95.6 0.0083 2.8E-07 49.0 3.8 25 33-57 23-47 (223)
446 2gj8_A MNME, tRNA modification 95.6 0.0066 2.2E-07 46.9 3.0 23 32-54 5-27 (172)
447 4ag6_A VIRB4 ATPase, type IV s 95.6 0.015 5E-07 51.4 5.7 35 31-65 35-72 (392)
448 3pey_A ATP-dependent RNA helic 95.6 0.044 1.5E-06 47.5 8.7 19 31-49 44-62 (395)
449 1pui_A ENGB, probable GTP-bind 95.6 0.0042 1.4E-07 49.4 1.9 28 27-54 22-49 (210)
450 2y8e_A RAB-protein 6, GH09086P 95.6 0.0068 2.3E-07 46.5 3.0 23 32-54 15-37 (179)
451 3fmo_B ATP-dependent RNA helic 95.6 0.059 2E-06 45.7 9.2 17 31-47 131-147 (300)
452 3nh6_A ATP-binding cassette SU 95.6 0.0035 1.2E-07 53.7 1.4 25 31-55 80-104 (306)
453 2vp4_A Deoxynucleoside kinase; 95.6 0.0082 2.8E-07 49.0 3.6 29 33-62 22-50 (230)
454 1m7b_A RND3/RHOE small GTP-bin 95.6 0.007 2.4E-07 47.1 3.0 23 32-54 8-30 (184)
455 1ko7_A HPR kinase/phosphatase; 95.6 0.01 3.4E-07 51.0 4.2 28 31-59 144-171 (314)
456 4tmk_A Protein (thymidylate ki 95.5 0.0072 2.5E-07 49.0 3.1 23 33-55 5-27 (213)
457 3clv_A RAB5 protein, putative; 95.5 0.0096 3.3E-07 46.5 3.7 24 31-54 7-30 (208)
458 1q0u_A Bstdead; DEAD protein, 95.5 0.039 1.3E-06 44.2 7.4 17 32-48 42-58 (219)
459 2wsm_A Hydrogenase expression/ 95.5 0.0076 2.6E-07 48.4 3.1 26 31-56 30-55 (221)
460 2bme_A RAB4A, RAS-related prot 95.5 0.0078 2.7E-07 46.6 3.0 23 32-54 11-33 (186)
461 1svi_A GTP-binding protein YSX 95.5 0.0087 3E-07 46.8 3.3 24 31-54 23-46 (195)
462 3tw8_B RAS-related protein RAB 95.5 0.0075 2.6E-07 46.3 2.9 22 32-53 10-31 (181)
463 3gj0_A GTP-binding nuclear pro 95.4 0.012 4.2E-07 47.2 4.1 22 33-54 17-39 (221)
464 2cxx_A Probable GTP-binding pr 95.4 0.0071 2.4E-07 47.0 2.6 22 33-54 3-24 (190)
465 2gf9_A RAS-related protein RAB 95.4 0.0094 3.2E-07 46.5 3.2 23 33-55 24-46 (189)
466 2gks_A Bifunctional SAT/APS ki 95.4 0.014 4.8E-07 54.0 4.8 32 32-63 373-407 (546)
467 2g6b_A RAS-related protein RAB 95.4 0.0097 3.3E-07 45.7 3.2 23 32-54 11-33 (180)
468 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0096 3.3E-07 46.0 3.2 23 32-54 6-28 (186)
469 1moz_A ARL1, ADP-ribosylation 95.3 0.0097 3.3E-07 45.9 3.1 24 30-53 17-40 (183)
470 3pqc_A Probable GTP-binding pr 95.3 0.01 3.6E-07 46.1 3.3 23 32-54 24-46 (195)
471 2hf9_A Probable hydrogenase ni 95.3 0.011 3.8E-07 47.5 3.6 25 31-55 38-62 (226)
472 3c5c_A RAS-like protein 12; GD 95.3 0.01 3.4E-07 46.4 3.2 22 33-54 23-44 (187)
473 1knx_A Probable HPR(Ser) kinas 95.3 0.0091 3.1E-07 51.2 3.1 29 31-60 147-175 (312)
474 3ihw_A Centg3; RAS, centaurin, 95.3 0.01 3.4E-07 46.4 3.2 22 33-54 22-43 (184)
475 3qks_A DNA double-strand break 95.3 0.01 3.5E-07 47.6 3.2 26 33-58 25-50 (203)
476 1yrb_A ATP(GTP)binding protein 95.3 0.019 6.4E-07 47.4 4.9 33 33-65 16-50 (262)
477 3k53_A Ferrous iron transport 95.3 0.0095 3.3E-07 49.8 3.1 23 32-54 4-26 (271)
478 1dek_A Deoxynucleoside monopho 95.3 0.0096 3.3E-07 49.2 3.0 26 34-59 4-29 (241)
479 2fg5_A RAB-22B, RAS-related pr 95.3 0.01 3.4E-07 46.6 3.0 22 33-54 25-46 (192)
480 3bwd_D RAC-like GTP-binding pr 95.3 0.013 4.5E-07 45.1 3.7 24 31-54 8-31 (182)
481 3eiq_A Eukaryotic initiation f 95.3 0.051 1.7E-06 47.6 8.0 19 31-49 77-95 (414)
482 1zbd_A Rabphilin-3A; G protein 95.2 0.01 3.4E-07 46.9 3.0 23 32-54 9-31 (203)
483 1vg8_A RAS-related protein RAB 95.2 0.011 3.7E-07 46.7 3.2 24 32-55 9-32 (207)
484 3dpu_A RAB family protein; roc 95.2 0.11 3.6E-06 47.9 10.3 22 33-54 43-64 (535)
485 2j0s_A ATP-dependent RNA helic 95.2 0.045 1.5E-06 48.1 7.5 20 31-50 74-93 (410)
486 2a5j_A RAS-related protein RAB 95.2 0.011 3.9E-07 46.2 3.2 22 33-54 23-44 (191)
487 2rcn_A Probable GTPase ENGC; Y 95.2 0.012 4E-07 51.6 3.5 25 32-56 216-240 (358)
488 2iwr_A Centaurin gamma 1; ANK 95.2 0.0082 2.8E-07 46.2 2.3 23 32-54 8-30 (178)
489 2bcg_Y Protein YP2, GTP-bindin 95.2 0.011 3.7E-07 46.8 3.0 23 32-54 9-31 (206)
490 3reg_A RHO-like small GTPase; 95.2 0.012 4E-07 46.1 3.2 23 33-55 25-47 (194)
491 3aji_B S6C, proteasome (prosom 95.2 0.02 6.7E-07 38.8 3.9 65 176-240 2-74 (83)
492 1gwn_A RHO-related GTP-binding 95.1 0.011 3.9E-07 47.1 3.0 22 33-54 30-51 (205)
493 1ksh_A ARF-like protein 2; sma 95.1 0.013 4.3E-07 45.5 3.2 25 30-54 17-41 (186)
494 3cph_A RAS-related protein SEC 95.1 0.013 4.3E-07 46.6 3.2 24 31-54 20-43 (213)
495 3ch4_B Pmkase, phosphomevalona 95.1 0.021 7.2E-07 45.8 4.4 37 29-65 9-46 (202)
496 2ew1_A RAS-related protein RAB 95.1 0.012 4.3E-07 46.7 3.0 22 33-54 28-49 (201)
497 1u0l_A Probable GTPase ENGC; p 95.0 0.0095 3.2E-07 50.8 2.3 25 32-56 170-194 (301)
498 3lxx_A GTPase IMAP family memb 95.0 0.013 4.3E-07 47.9 3.0 24 32-55 30-53 (239)
499 2x77_A ADP-ribosylation factor 95.0 0.013 4.3E-07 45.7 2.8 24 30-53 21-44 (189)
500 2cjw_A GTP-binding protein GEM 95.0 0.016 5.3E-07 45.7 3.4 22 33-54 8-29 (192)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-41 Score=300.75 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..++.+++.|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 154 ~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l 233 (405)
T 4b4t_J 154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233 (405)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999998763 4568888
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||+|.+++.+...... .+.....+++.+|+.|+++... .+++||+|||+|+
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~-------------~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGG-------------GDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSG-------------GGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCC-------------CcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChh
Confidence 87764 69999999999998744332211 1234467889999999998654 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987654444556677765 469999999987
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-39 Score=291.52 Aligned_cols=200 Identities=28% Similarity=0.357 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..++.++++|..+|+++++|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~l 267 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQI 267 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999988863 3567788
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||+|.++..+..... ..+.....+++.+|+.+++.... .+++||+|||+|+
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~-------------~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKRYDSNS-------------GGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCCSCSSC-------------SSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred HHHHHhcCCcEEEEehhhhhcccCCCCCC-------------CccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 87664 6999999999999864432211 11234567888999999987554 5799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987654444456666665 569999999987
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-40 Score=297.62 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..|+.++++|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l 266 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA 266 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998863 3567788
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||+|.++..+....... ......+++.+|+.|+++... .+++||+|||+|+
T Consensus 267 F~~A~~~aP~IifiDEiDal~~~R~~~~~~~-------------~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSG-------------DREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp HHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-------------THHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred HHHHHhcCCeEEeecchhhhhhccCCCCCCC-------------chHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 87654 699999999999987553322211 134456788999999998654 5799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~ 395 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT 395 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999876644433456666665 469999999987
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-40 Score=296.18 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..++.+++.|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~ 266 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999998864 3557778
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..||||||||+|.++..+..... ..+.....+++.||+.|+++... .+++||+|||+|+
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~-------------~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGT-------------SADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCC-------------SSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred HHHHHhcCCceeeeecccccccccccCCC-------------CcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 8766 46999999999999864422111 11234466889999999998654 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999977654444456667665 469999999987
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-39 Score=288.17 Aligned_cols=200 Identities=24% Similarity=0.283 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..++.++++|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l 294 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999998864 4567888
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..||||||||+|.++..+...... .......+++.+|+.|++.... .+++||+|||+|+
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-------------~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGGARFDDGAG-------------GDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSBCCSSSSCG-------------GGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred HHHHHhcCCceEeecccccccccccCcCCC-------------ccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCcc
Confidence 8766 469999999999998644322111 1234456788899999987554 6799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987654444456666664 469999999987
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-39 Score=288.55 Aligned_cols=200 Identities=27% Similarity=0.390 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+++.+.+..|+.++++|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.+ ...++.+
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~l 257 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV 257 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999998763 3567888
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|||+||||+|.++..+..... ..+.....+++.||+.|+++... .+++||+|||+|+
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~~R~~~~~-------------~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIATKRFDAQT-------------GSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHCSCSSSCS-------------CCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred HHHHHHcCCCeeechhhhhhhccccCCCC-------------CCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 87764 6999999999999864422111 11234567899999999998665 5699999999999
Q ss_pred CCcccccCCCcceeEEEcC-CCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMS-HCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~-~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+||+|||||+..|+|| .|+.++|..||+.++.........++..++.. .+||++||.+++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~ 387 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIM 387 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHH
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999999999997 89999999999999977654444456666665 569999999987
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-35 Score=282.94 Aligned_cols=200 Identities=23% Similarity=0.339 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++|+++.+.+..++.++..|..+|+.+++|+|||||||||||++|+++|.+++.+|+.++.+++. ++..++.+
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l 562 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999987765 45678999
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||||.+++.+...... .......++++||..|+++... .+++||+|||+|+
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-------------~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAKARGGNIGD-------------GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC---------------------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSS
T ss_pred HHHHHHcCCceeechhhhHHhhccCCCCCC-------------CchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCch
Confidence 98875 59999999999998765432211 1234567899999999998654 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||+|++|||||+..|+|+.|+.++|.+||+.++.+.......++..++.. .+||++||.+++
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~ 691 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHH
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987655555567777765 459999999998
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-33 Score=270.26 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++++.+.+..++.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+++.+++.++.+ ...++.+
T Consensus 210 ~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~l 289 (806)
T 3cf2_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp CTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999887653 4568888
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .||||||||+|.+++.++... ......++++|+..|+++... .+++||+|||+++
T Consensus 290 F~~A~~~~PsIIfIDEiDal~~~r~~~~----------------~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d 351 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTH----------------GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (806)
T ss_dssp HHHHTTSCSEEEEEESGGGTCCTTTTCC----------------CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTT
T ss_pred HHHHHHcCCeEEEEehhcccccccCCCC----------------ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChh
Confidence 88775 599999999999987443211 233456888999999998665 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.||++|+|||||+..|+|+.|+.++|.+||+.++.........++..++.. .+|+++||..++
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987654444556667665 569999999987
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=3.5e-29 Score=217.57 Aligned_cols=200 Identities=24% Similarity=0.349 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------ChhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GNNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~~~l~~~ 76 (266)
+++++.+.+.+..++..++.|..+|+.+++++|||||||||||++|+++|..++.+++.+++..+. ....+..+
T Consensus 21 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~ 100 (301)
T 3cf0_A 21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 100 (301)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999987653 23456677
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++||||||+|.+...+..... .........++.++..+++.... .+++||+|||.++
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~-------------~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~~~ 165 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIG-------------DGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTC-------------CSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcC-------------CcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCCcc
Confidence 76653 5899999999999764322110 00123345678888988876433 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-cCCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIA-TAKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~i~~~l 217 (266)
.+|++++|+|||+..|+++.|+.++|.+|++.++.........++..++. ..+|+++||.+++
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~ 229 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999997764332333444444 3569999999987
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=212.83 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++|+.+.+.+..++..+..|..+++.+++|++|+||||||||++++++|..++.+++.++...+.. ...+..+
T Consensus 16 ~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~v 95 (274)
T 2x8a_A 16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95 (274)
T ss_dssp HHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999887753 2345666
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++++|+||+|.++..+.... ........+.++..|++.... ..++++++||+|+
T Consensus 96 f~~a~~~~p~i~~~Deid~~~~~r~~~~----------------~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 96 FQRAKNSAPCVIFFDEVDALCPRRSDRE----------------TGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPD 157 (274)
T ss_dssp HHHHHHTCSEEEEEETCTTTCC-------------------------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGG
T ss_pred HHHHHhcCCCeEeeehhhhhhcccCCCc----------------chHHHHHHHHHHHhhhccccc--CCEEEEeecCChh
Confidence 7664 3589999999998865322110 012245677888889877443 5688999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCC-CC--cHHHHHHHhhc---CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAE-HP--LFVEIEKLIAT---AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~-~~--~~~~~~~l~~~---~~~s~~~i~~~l 217 (266)
.||++++|||||+..|+++.|+.++|.+||+.++.... .. ...++..++.. .+||++||..++
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 99999999999999999999999999999999885421 11 22345556654 489999999987
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=6.3e-28 Score=207.47 Aligned_cols=201 Identities=26% Similarity=0.321 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+..+..+|..+++++|||||||||||++++++|+.++.+++.+++..+.. ...+..+
T Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 102 (285)
T 3h4m_A 23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI 102 (285)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999887753 2334555
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++||||||+|.+...+..... .........+..+++.+++.... .+++||+|||.++
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~-------------~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALT-------------GGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRPD 167 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCC-------------GGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCGG
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccC-------------CccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCch
Confidence 5544 35789999999998752211100 01123345666777777765333 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+++++++++||+..+.++.|+.++|.+|++.++.........++..++.. .++++++|..++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999877654444445555554 4589999998763
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=209.02 Aligned_cols=195 Identities=21% Similarity=0.287 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHc-CCcEEEEeCCcccC------hhhHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDVYDLELSNLLG------NNDLRH 75 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~-~~~~~~i~~~~~~~------~~~l~~ 75 (266)
+++|+.+.+.+..++..+..|.. +..+++++|||||||||||++|+++|+++ +.+++.+++..+.. ...+..
T Consensus 18 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~ 96 (322)
T 1xwi_A 18 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 96 (322)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHH
Confidence 46788999999999998888763 35677899999999999999999999999 89999999987753 345667
Q ss_pred HHHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC
Q 024550 76 ILIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK 153 (266)
Q Consensus 76 ~~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~ 153 (266)
+|..+ ..++||||||+|.++..+... .......+++.++..+++.... ..+++||+|||.+
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~----------------~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~ 159 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSEN----------------ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIP 159 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSC----------------CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCT
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccc----------------cchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCc
Confidence 77655 468999999999997532211 0123346778889998876432 3579999999999
Q ss_pred CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhc-CCCCHHHHHHHH
Q 024550 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 154 ~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
+.+|++++| ||+..++++.|+.++|..|++.++......+ ..++..++.. .+|+++||..++
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999 9999999999999999999999998765443 4566777765 469999999987
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=8e-28 Score=219.91 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
++.++++.+ +..++..+..|..+|...++++||+||||||||++++++|.+++.+|+.++++++.. ...++.+
T Consensus 22 ~~~~~~l~e-~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~l 100 (476)
T 2ce7_A 22 EEAIEELKE-VVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDL 100 (476)
T ss_dssp HHHHHHHHH-HHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHH
Confidence 355666665 456788889999999999999999999999999999999999999999999987753 2446677
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .|+||||||+|.+...+..... ..+.....+++.++..|+++... .+++||+|||.++
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~-------------g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~ 165 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLG-------------GGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC----------------------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGG
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccC-------------cCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChh
Confidence 76654 6899999999999753321100 01233356788999999876443 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+|++++|||||+..|.++.|+.++|.+|++.++.........++..++.. .++++++|.+++.
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999876543322234445544 5699999998873
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=3.1e-27 Score=207.12 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+.++.. +..+++++|||||||||||++|+++|++++.+++.+++..+.+ ...+..+
T Consensus 24 ~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 102 (322)
T 3eie_A 24 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 102 (322)
T ss_dssp HHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHH
Confidence 46788888888888888877765 4556789999999999999999999999999999999877643 2345666
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++||||||+|.+...+.... ......+.+.++..+++.... ..+++||+|||.++
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~ 165 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTGTRGEGE----------------SEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPW 165 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSCC----------------------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEechhhhhhccCCCCc----------------chHHHHHHHHHHHHhcccccc-CCceEEEEecCChh
Confidence 6554 3579999999999975332211 133456778888888876432 35799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIATA-KVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~-~~s~~~i~~~l 217 (266)
.+|++++| ||+..|+++.|+.++|.+|++.++......+ ...+..++... +|++++|..++
T Consensus 166 ~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 166 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp GSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred hCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999 9999999999999999999999998776543 45667776654 59999999887
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=198.23 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+. ..++..+..|..+|...++++|||||||||||++|+++|+.++.+++.+++..+.. ...+..+
T Consensus 12 ~~~~~~l~~~-~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 2qz4_A 12 HEAKLEVREF-VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90 (262)
T ss_dssp HHHHHHHHHH-HHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHH
Confidence 3466666554 55688888899999999999999999999999999999999999999999987753 2345566
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++||||||+|.+...+....... ........++.+++.+++... ..++++|+|||.++
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~------------~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGF------------SNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCc------------cchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChh
Confidence 65543 489999999999976332211000 012334567778888876533 35789999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHH--HHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEI--EKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+|++++|+|||+..++|+.|+.++|.+|++.++...+.....+. ..++.. .++++++|.+++.
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999977655544332 445544 4699999988873
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=5.5e-27 Score=215.74 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
...++.+.+.+..++..+.+|..+|.+++.++|||||||||||++|+++|+.++.+|+.++|..+.+ ...+..+
T Consensus 210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~ 289 (489)
T 3hu3_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (489)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHH
Confidence 3567888888888899999999999999999999999999999999999999999999999877653 2345667
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .+++|||||||.+...++.. .......+++.|+..|++.... ..++||+|||+++
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~----------------~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKT----------------HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSC----------------CCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGG
T ss_pred HHHHHhcCCcEEEecchhhhccccccc----------------cchHHHHHHHHHHHHhhccccC--CceEEEEecCCcc
Confidence 76654 47899999999997532111 0122345778888888876443 5699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+++++.++|||+..|+|+.|+.++|.+|++.++.........++..++.. .++++++|..++
T Consensus 352 ~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHH
Confidence 999999999999999999999999999999999877654444445555554 569999999887
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=8.3e-27 Score=197.82 Aligned_cols=199 Identities=23% Similarity=0.360 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+ +..++..+..|..+|...+++++||||||||||++++++|+.++.+++.+++..+.. ...+..+
T Consensus 18 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 96 (257)
T 1lv7_A 18 DEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96 (257)
T ss_dssp HHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHH
Confidence 345666655 456688888888889888999999999999999999999999999999999887652 3456677
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++++||||+|.+...+.... ..........++.++..+++... ..++++|+|||.++
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~~~~~~~-------------~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGL-------------GGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTCCCSTTS-------------CCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HHHHHHcCCeeehhhhhhhhccCCCCCc-------------CCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 76654 478999999999865221100 00112223567788888887643 35699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.++++++|++||+..++++.|+.++|.+|++.++..........+..++.. .+|++++|.+++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999876543222233444444 457999999887
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=1e-26 Score=206.39 Aligned_cols=195 Identities=19% Similarity=0.265 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+..|.. +..+++++|||||||||||++|+++|++++.+++.+++..+.. ...+..+
T Consensus 57 ~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 135 (355)
T 2qp9_X 57 EGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQL 135 (355)
T ss_dssp GGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHH
Confidence 35778888888888888887765 5667789999999999999999999999999999999876542 3445666
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++||||||+|.+...+.... ......+.+.++..|++.... ..+++||+|||.++
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~----------------~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGE----------------SEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC----------------------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGG
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCc----------------chHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcc
Confidence 66553 689999999999975332211 123345677888888876432 35699999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhcC-CCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIATA-KVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~-~~s~~~i~~~l 217 (266)
.++++++| ||+..++++.|+.++|..|++.++......+ ..++..++... +|++++|..++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999 9999999999999999999999998765443 45666666654 59999999987
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=5.3e-26 Score=207.42 Aligned_cols=195 Identities=20% Similarity=0.267 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHc-CCcEEEEeCCcccC------hhhHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDVYDLELSNLLG------NNDLRH 75 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~-~~~~~~i~~~~~~~------~~~l~~ 75 (266)
+++++.+.+.+..++..+..|.. +..+++++|||||||||||++|+++|.++ +.+++.+++..+.+ ...+..
T Consensus 140 ~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 218 (444)
T 2zan_A 140 EGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 218 (444)
T ss_dssp HHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHH
Confidence 45778888888888888877653 34567899999999999999999999999 89999999987753 345666
Q ss_pred HHHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC
Q 024550 76 ILIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK 153 (266)
Q Consensus 76 ~~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~ 153 (266)
+|..+ ..++||||||+|.+++.+... .......+.+.++..+++... ...+++||+|||.+
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~----------------~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~ 281 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSEN----------------ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIP 281 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCC----------------CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCG
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCc----------------cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCc
Confidence 77654 468999999999986522111 112345677888888887642 23579999999999
Q ss_pred CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhc-CCCCHHHHHHHH
Q 024550 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 154 ~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
+.+|++++| ||+..++++.|+.++|..|++.++......+ ..++..++.. .+|++++|..++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999 9999999999999999999999997765433 4566666665 469999999987
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=7.5e-27 Score=199.11 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+ +..++..+..|..++...++++|||||||||||++|+++|+.++.+++.+++..+.. ...+..+
T Consensus 17 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 95 (268)
T 2r62_A 17 EEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 95 (268)
T ss_dssp TTTHHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTT
T ss_pred HHHHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHH
Confidence 345666666 455788999999999999999999999999999999999999999999999877642 2233344
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++||||||+|.+...+....... .+......++.++..+++... ...+++||+|||.++
T Consensus 96 ~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~------------~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 96 FETAKKQAPSIIFIDEIDAIGKSRAAGGVVS------------GNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPE 162 (268)
T ss_dssp HHHHHHSCSCEEEESCGGGTTC----------------------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSCCT
T ss_pred HHHHHhcCCeEEEEeChhhhcccccccccCC------------CchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCCch
Confidence 4443 3579999999999975332211110 112334567788888876533 234589999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.++++++|+|||+..++|+.|+.++|.++++.++.........++..++.. .++++++|.+++.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999876543322233444443 4589999988763
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=198.43 Aligned_cols=197 Identities=22% Similarity=0.276 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+.+|...+. +++++|||||||||||++|+++|..++.+++.+++..+.. ...+..+
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 199 (389)
T 3vfd_A 121 DLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRAL 199 (389)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHH
Confidence 45677777777777777777766663 4679999999999999999999999999999999988753 2345556
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++||||||||.++..+.... ......+++.++..+++........++||+|||.++
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLCERREGE----------------HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC------------------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEECchhhcccCCCcc----------------chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 6554 3579999999999975332211 123456777888888887665556799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+++++++ ||...|+|+.|+.++|..|+..++...+..+. ..+..++.. .++++++|..++.
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999 99999999999999999999999988766554 445555554 4689999988763
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-25 Score=206.16 Aligned_cols=218 Identities=22% Similarity=0.318 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (266)
+.+.++.+ +..++..+..|..++...++|+||+||||||||++++++|..++.+++.+++..+.. ...+..+|
T Consensus 38 ~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 38 EAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 45566555 456677888888899999999999999999999999999999999999999987653 23455666
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. .++++||||+|.+...+.... ..........++.++..|++.... ..++++++||+|+.
T Consensus 117 q~a~~~~p~il~IDEId~l~~~r~~~~-------------~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~~ 181 (499)
T 2dhr_A 117 ETAKRHAPCIVFIDEIDAVGRKRGSGV-------------GGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDI 181 (499)
T ss_dssp TTSSSSSSCEEEEECGGGTCCCSSSST-------------TTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGGG
T ss_pred HHHHhcCCCEEEEehHHHHHHhhccCc-------------CCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChhh
Confidence 6654 479999999998864221100 001123346778889988876432 56899999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHHHc-------CCCHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQLMR-------NEAPEFAL 227 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l~~-------~~~~~~~~ 227 (266)
+|++++|||||+..|.|+.|+.++|.+|++.++.........++..++.. .+++++||.+++.. ........
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~ 261 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 261 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCS
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999988865433322334445554 46899999988732 11122344
Q ss_pred HHHHHHHHhh
Q 024550 228 SGLIEFLESK 237 (266)
Q Consensus 228 ~~~~~~~~~~ 237 (266)
+++..+++..
T Consensus 262 ~dl~~al~~v 271 (499)
T 2dhr_A 262 KDLEEAADRV 271 (499)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=1.7e-24 Score=183.15 Aligned_cols=198 Identities=24% Similarity=0.346 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (266)
+.+.++.+ +..++..+..+...+...++|++|+||||||||+++++++..++.+++.+++..+.. ...+..+|
T Consensus 23 ~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 23 EAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45555554 555677888899999999999999999999999999999999999999998765421 23355666
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
.... .++++++||+|.+...+..... .........++.++..+++... ...++++++||.|+.
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~-------------~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVG-------------GGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 166 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC----------------------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred HHHHhcCCeEEEehhhhhhhcccCcccc-------------ccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchh
Confidence 6653 4799999999988653221000 0012334567788888887643 245788999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
+|++++|++||+..|+++.|+.++|.+|++.+..........++..++.. .+++++||.+++
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999988765432222334455554 468999999887
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.8e-25 Score=195.27 Aligned_cols=197 Identities=20% Similarity=0.288 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+..|...+ .+++++|||||||||||++|+++|..++.+++.++++.+.. ...+..+
T Consensus 90 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 168 (357)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL 168 (357)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHH
Confidence 4567777777777777777665554 45779999999999999999999999999999999988753 2334555
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+ ..++||||||+|.+...+.... .......++.++..+++.......+++||+|||.++
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLSQRGDGE----------------HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTBC----------------------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCchhhhccCCCCc----------------chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 5544 3589999999999965322111 123356778888888877654456799999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhc-CCCCHHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
.+++++++ ||...++++.|+.++|..++..++...+..+ ...+..++.. .++++++|..++.
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999 9999999999999999999999987665444 3455566554 4589999998873
No 25
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=1.4e-24 Score=187.86 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=118.1
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHHHHc------ccCCeeeeecchh
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHILIAT------ENKSILVVEDIDC 93 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~~~~------~~~~vl~iDeid~ 93 (266)
.+..+|+++|||||||||||++|+++|+.++.+++.++++.+.+ ...+...|..+ ..++||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 46778899999999999999999999999999999999887653 23456666555 2689999999999
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc---------cCCCCceEEEEecCCCCCCcccccCCC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW---------SSCGDERIIIFTTNHKERLDPALLRPG 164 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ivi~ttn~~~~ld~al~r~~ 164 (266)
+++....... .......+.+.|++.|++.. .....+++||+|||.++.+|++++|||
T Consensus 111 ~~~~~~~~~~--------------~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~ 176 (293)
T 3t15_A 111 GAGRMGGTTQ--------------YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 176 (293)
T ss_dssp ---------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHH
T ss_pred hcCCCCCCcc--------------ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCC
Confidence 8762221110 01122345677788876332 112356999999999999999999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHH
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVA 214 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~ 214 (266)
||+..|+ .|+.++|.+|++.++...... ...+..+... |++++|.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~--~~~~~l~ 221 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRTDNVP-AEDVVKIVDN--FPGQSID 221 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH--SCSCCHH
T ss_pred CCceeEe--CcCHHHHHHHHHHhccCCCCC-HHHHHHHhCC--CCcccHH
Confidence 9998887 479999999999988765332 4555555554 5555553
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=2.6e-24 Score=186.01 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++..+..|...+ .+++++||+||||||||++|+++|+.++.+++.+++..+.. ...+..+
T Consensus 27 ~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 105 (297)
T 3b9p_A 27 DVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRAL 105 (297)
T ss_dssp HHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHH
Confidence 4567777777777777777666554 35679999999999999999999999999999999987653 2334455
Q ss_pred HHHc--ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC-CCCceEEEEecCCC
Q 024550 77 LIAT--ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-CGDERIIIFTTNHK 153 (266)
Q Consensus 77 ~~~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~ivi~ttn~~ 153 (266)
|..+ ..++||||||+|.+...+.... ........+.++..+++.... .+.+++||++||.+
T Consensus 106 ~~~~~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 106 FAVARHMQPSIIFIDEVDSLLSERSSSE----------------HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp HHHHHHTCSEEEEEETGGGTSBCC---------------------CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HHHHHHcCCcEEEeccHHHhccccccCc----------------chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 5443 4689999999999865322111 122344566788888765432 12468999999999
Q ss_pred CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhc-CCCCHHHHHHHHH
Q 024550 154 ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIAT-AKVTPADVAEQLM 218 (266)
Q Consensus 154 ~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~-~~~s~~~i~~~l~ 218 (266)
+.+++++++ ||+..++++.|+.++|..|+..++...+..+. ..+..++.. .+++++++..++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999 99999999999999999999999877655443 445555544 5689999988763
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=2.3e-27 Score=230.31 Aligned_cols=199 Identities=23% Similarity=0.349 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHHH
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHIL 77 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~~ 77 (266)
++|+.+.+.+..++..+..+..+++.++.++|||||||||||++++++|..++.+++.+++..+.+ ...+..+|
T Consensus 484 ~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f 563 (806)
T 1ypw_A 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563 (806)
T ss_dssp CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHH
T ss_pred hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHH
Confidence 466777776666677777788888889999999999999999999999999999999999887653 34567777
Q ss_pred HHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC
Q 024550 78 IATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER 155 (266)
Q Consensus 78 ~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ 155 (266)
..+. .++||||||+|.++..+..... ........+++.|+..|++.... .+++||+|||+++.
T Consensus 564 ~~a~~~~p~vl~iDEid~l~~~r~~~~~-------------~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 564 DKARQAAPCVLFFDELDSIAKARGGNIG-------------DGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI 628 (806)
T ss_dssp HHHHHHCSBCCCCSSHHHHCCTTTTCCS-------------HHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGG
T ss_pred HHHHhcCCeEEEEEChhhhhhhccCCCC-------------CcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCccc
Confidence 7654 5799999999998753321100 00123456788999999987543 57999999999999
Q ss_pred CcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 156 LDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 156 ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
||++++|||||+..|+|+.|+.++|..||+.++.........++..++.. .+||+++|.+++
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 691 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHH
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHH
Confidence 99999999999999999999999999999999976543322333444443 469999999987
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.8e-23 Score=179.44 Aligned_cols=199 Identities=24% Similarity=0.338 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
++++.++.+ +..++..+..+...++..++|++|+||||||||+++++++..++.+++.+++..+.. ...+..+
T Consensus 46 ~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 46 EEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 345555544 556677888899999999999999999999999999999999999999998765421 2234556
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|.... .++++++||+|.+...+..... .........++.++..+++... ...++++++||.|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~-------------~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVG-------------GGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 189 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC---------------------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTT
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccC-------------CcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCch
Confidence 66543 4799999999988642211000 0012234566777888876533 24578899999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|++++|++||+..|+|+.|+.++|.+|++.+..........++..++.. .++++++|.+++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~ 253 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 253 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999988865432222334445544 468899998887
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=4.1e-22 Score=193.52 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC------hhhHHHH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG------NNDLRHI 76 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~------~~~l~~~ 76 (266)
+++++.+.+.+..++.++..|..+++.++.++|||||||||||++++++|..++.+++.+++..+.+ ...+..+
T Consensus 210 ~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~v 289 (806)
T 1ypw_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp SGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999876643 2345566
Q ss_pred HHHcc--cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC
Q 024550 77 LIATE--NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE 154 (266)
Q Consensus 77 ~~~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~ 154 (266)
|..+. .++++|+||+|.++..+... .......+...++..+++.... ..+++|+|||+++
T Consensus 290 f~~a~~~~p~il~iDEid~l~~~~~~~----------------~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~ 351 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAPKREKT----------------HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSCTTSCC----------------CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTT
T ss_pred HHHHHhcCCcEEEeccHHHhhhccccc----------------cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCch
Confidence 66543 58999999999887522110 0122245667788888877544 5689999999999
Q ss_pred CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
.+|+++.+++||+..+.++.|+.++|.+|+..+..........++..++.. .+++++++..++
T Consensus 352 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 999999999999999999999999999999988876544333344445544 569999988765
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=3.7e-19 Score=156.33 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=125.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANP 109 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~ 109 (266)
+..++||+||||||||++|+++|+.++.+++.+++..+.....+...+.....+++|||||++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------- 120 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP------------- 120 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH-------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEechhhcCH-------------
Confidence 4557999999999999999999999999999999998877777888888888899999999998743
Q ss_pred ccccccccccccchhhhhhhhhhhhcccc--------------CCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCC
Q 024550 110 DFLIAGYEQQKQYHITLSGLLNFIDGLWS--------------SCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHC 175 (266)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p 175 (266)
.....|+..++.... ....++++|++||....++++|++ ||+..+.|+.|
T Consensus 121 --------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~ 184 (338)
T 3pfi_A 121 --------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFY 184 (338)
T ss_dssp --------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCC
T ss_pred --------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCc
Confidence 123334444443210 000147899999999999999999 99999999999
Q ss_pred CHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHHH
Q 024550 176 TPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l~ 218 (266)
+.+++..++..+....+..+.. .+..++.....+++++.+.+.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999988776655544 345556656678887777663
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=2.5e-19 Score=155.34 Aligned_cols=188 Identities=17% Similarity=0.264 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCCC---ceeEEecCCCCChHHHHHHHHHHc-------CCcEEEEeCCcccC----
Q 024550 4 DMKKMIMDDLERFLQRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------KFDVYDLELSNLLG---- 69 (266)
Q Consensus 4 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~---~~iLl~GppGtGKT~la~ala~~~-------~~~~~~i~~~~~~~---- 69 (266)
++++.+.+.+..+. .+..+..+|+..+ .++|||||||||||++|+++|+.+ ..+++.+++..+..
T Consensus 38 ~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g 116 (309)
T 3syl_A 38 PVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116 (309)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTT
T ss_pred HHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhccc
Confidence 45556655544433 4666777776543 359999999999999999999988 34899999887753
Q ss_pred --hhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEE
Q 024550 70 --NNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIII 147 (266)
Q Consensus 70 --~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi 147 (266)
...+...|..+ .++||||||+|.++..++. .......++.|++.++.. ..++++|
T Consensus 117 ~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~------------------~~~~~~~~~~Ll~~l~~~----~~~~~~i 173 (309)
T 3syl_A 117 HTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE------------------RDYGQEAIEILLQVMENN----RDDLVVI 173 (309)
T ss_dssp CHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---------------------CCTHHHHHHHHHHHHHC----TTTCEEE
T ss_pred ccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc------------------ccccHHHHHHHHHHHhcC----CCCEEEE
Confidence 22345555544 5789999999988642111 122345667777777753 2467888
Q ss_pred EecCCCC-----CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc---------CCCCHHHH
Q 024550 148 FTTNHKE-----RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT---------AKVTPADV 213 (266)
Q Consensus 148 ~ttn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~---------~~~s~~~i 213 (266)
++||.+. .++++|.+ ||+..|+|+.|+.+++..|+..++...+..+..+....+.. ...+.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l 251 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSI 251 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8888653 35799999 99999999999999999999999987665555444332221 12346666
Q ss_pred HHHH
Q 024550 214 AEQL 217 (266)
Q Consensus 214 ~~~l 217 (266)
.+++
T Consensus 252 ~~~l 255 (309)
T 3syl_A 252 RNAL 255 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=5.3e-20 Score=168.38 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=99.4
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHcC--CcEEEEeCCcccC-----hhhHHHHHHHc-----ccCCeeeeecchh
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLK--FDVYDLELSNLLG-----NNDLRHILIAT-----ENKSILVVEDIDC 93 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~~--~~~~~i~~~~~~~-----~~~l~~~~~~~-----~~~~vl~iDeid~ 93 (266)
.|..+++++|||||||||||++|+++|+.++ .+++.++++.+.. ...+...|..+ ..|+||||||+|.
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhh
Confidence 3666778999999999999999999999999 9999999987763 23377777776 4689999999999
Q ss_pred hHHHhHHHhhhhhc--CCcccc-ccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCccee--
Q 024550 94 CIELQDRLSRARAA--NPDFLI-AGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDM-- 168 (266)
Q Consensus 94 l~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~-- 168 (266)
++..+......... ...... ....+......+.+.++..++......+..++|++|||+++.+|+++.|||||+.
T Consensus 138 l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~ 217 (456)
T 2c9o_A 138 LTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEA 217 (456)
T ss_dssp EEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSS
T ss_pred cccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcce
Confidence 98755433211100 000000 0000111222333445555543222223445666899999999999999999988
Q ss_pred EEEcCCCCH
Q 024550 169 HINMSHCTP 177 (266)
Q Consensus 169 ~i~~~~p~~ 177 (266)
.+.++.|+.
T Consensus 218 ~~~v~~p~~ 226 (456)
T 2c9o_A 218 EEYVPLPKG 226 (456)
T ss_dssp SSEECCCCS
T ss_pred eEecCCCch
Confidence 566677754
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=1.3e-18 Score=151.71 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=124.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHH-cccCCeeeeecchhhHHHhHHHhhhhhcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIA-TENKSILVVEDIDCCIELQDRLSRARAAN 108 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~vl~iDeid~l~~~~~~~~~~~~~~ 108 (266)
.+.++||+||||||||++|+++++.++.+++.+++..+.....+...+.. ...+++|||||++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~----------- 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQ----------- 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHH-----------
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccc-----------
Confidence 35689999999999999999999999999999999988776677777666 567899999999987531
Q ss_pred Cccccccccccccchhhhhhhhhhhhcccc--------------CCCCceEEEEecCCCCCCcccccCCCcceeEEEcCC
Q 024550 109 PDFLIAGYEQQKQYHITLSGLLNFIDGLWS--------------SCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174 (266)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~ 174 (266)
....++..++.... ....++++|++||.+..++++|.+ ||+..+.++.
T Consensus 106 ----------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~ 167 (324)
T 1hqc_A 106 ----------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEY 167 (324)
T ss_dssp ----------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCC
T ss_pred ----------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCC
Confidence 12233333332210 001247899999999999999999 9988999999
Q ss_pred CCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHHH
Q 024550 175 CTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQLM 218 (266)
Q Consensus 175 p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l~ 218 (266)
|+.+++..++..+....+..+. ..+..++.....+++++.+++.
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999998876655554 4455666666788888888764
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=3.4e-18 Score=145.85 Aligned_cols=144 Identities=20% Similarity=0.250 Sum_probs=99.4
Q ss_pred HHHhCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC-------hhhHHHHHHHc--ccCCeeeeecchh
Q 024550 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG-------NNDLRHILIAT--ENKSILVVEDIDC 93 (266)
Q Consensus 23 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~-------~~~l~~~~~~~--~~~~vl~iDeid~ 93 (266)
+...+..++.++|||||||||||++|+++|..++.+++.+++.+... ...+..+|..+ ..+++|||||+|.
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 33445667788999999999999999999999999999998765321 13345566554 3589999999999
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcc-cccCCCcceeEEEc
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDP-ALLRPGRMDMHINM 172 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~-al~r~~Rf~~~i~~ 172 (266)
+++..... .......+..|...+++.. ..+..+++|+|||.++.+++ .+.+ ||...|++
T Consensus 136 l~~~~~~~-----------------~~~~~~~l~~L~~~~~~~~-~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~ 195 (272)
T 1d2n_A 136 LLDYVPIG-----------------PRFSNLVLQALLVLLKKAP-PQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHV 195 (272)
T ss_dssp HTTCBTTT-----------------TBCCHHHHHHHHHHTTCCC-STTCEEEEEEEESCHHHHHHTTCTT--TSSEEEEC
T ss_pred hhccCCCC-----------------hhHHHHHHHHHHHHhcCcc-CCCCCEEEEEecCChhhcchhhhhc--ccceEEcC
Confidence 86421100 0112333444444444332 22456889999999988887 6677 99999999
Q ss_pred CCCCH-HHHHHHHHH
Q 024550 173 SHCTP-SGFKMLASN 186 (266)
Q Consensus 173 ~~p~~-~~~~~i~~~ 186 (266)
|.++. ++...++..
T Consensus 196 p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 196 PNIATGEQLLEALEL 210 (272)
T ss_dssp CCEEEHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHh
Confidence 87776 566666554
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=1.4e-18 Score=150.32 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=100.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC--------hhhHHHHHHHc-------ccCCeeeeecchhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG--------NNDLRHILIAT-------ENKSILVVEDIDCC 94 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~-------~~~~vl~iDeid~l 94 (266)
.+.++||+||||||||++++++|+.++.+++.+++..+.. ...+..++... ..++||||||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 3568999999999999999999999999999999987653 12345554432 34799999999998
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc------CCCCceEEEEe----cCCCCCCcccccCCC
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS------SCGDERIIIFT----TNHKERLDPALLRPG 164 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~~~~~~ivi~t----tn~~~~ld~al~r~~ 164 (266)
....... ..+.....+.+.|+..+++... .....++||++ ++.+..++++|++
T Consensus 129 ~~~~~~~---------------~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-- 191 (310)
T 1ofh_A 129 CKKGEYS---------------GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG-- 191 (310)
T ss_dssp SCCSSCC---------------SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--
T ss_pred Ccccccc---------------ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--
Confidence 6411000 0001112235566666664310 01235788887 4577889999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHh
Q 024550 165 RMDMHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~ 187 (266)
||+..|+|+.|+.+++..|+...
T Consensus 192 R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 192 RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSS
T ss_pred hCCceEEcCCcCHHHHHHHHHhh
Confidence 99989999999999999999853
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=1.1e-18 Score=155.04 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=98.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh--------hhHHHHHHHc------ccCCeeeeecchhhH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN--------NDLRHILIAT------ENKSILVVEDIDCCI 95 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~--------~~l~~~~~~~------~~~~vl~iDeid~l~ 95 (266)
++.++||+||||||||++|+++|..++.+++.++++.+... ..+..++... ..++||||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 46689999999999999999999999999999999876532 2344455443 357999999999986
Q ss_pred HHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC-----------------CCCceEEEEecCCC-----
Q 024550 96 ELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-----------------CGDERIIIFTTNHK----- 153 (266)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------------~~~~~ivi~ttn~~----- 153 (266)
..+...... .......+++.|+..|++.... ...+++||+++|..
T Consensus 130 ~~~~~~~~~-------------~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~ 196 (363)
T 3hws_A 130 RKSDNPSIT-------------RDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKV 196 (363)
T ss_dssp CCSSCC----------------CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHH
T ss_pred ccccccccc-------------cccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHH
Confidence 522111000 0111123678888888843110 11345566665532
Q ss_pred -----CC-----------------------------------CcccccCCCcceeEEEcCCCCHHHHHHHHHH
Q 024550 154 -----ER-----------------------------------LDPALLRPGRMDMHINMSHCTPSGFKMLASN 186 (266)
Q Consensus 154 -----~~-----------------------------------ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~ 186 (266)
.. +.++|++ ||+..+.|+.|+.+.+..|+..
T Consensus 197 i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 197 ISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 11 6788888 9999999999999999999886
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=8.9e-19 Score=158.27 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCC-CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC--------hhhH
Q 024550 3 FDMKKMIMDDLERFLQRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG--------NNDL 73 (266)
Q Consensus 3 ~~~~~~i~~~~~~~l~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~--------~~~l 73 (266)
++.|+.+...+.+++.+...+..... .+++++||+||||||||++++++|..++.+++.++++.+.. ...+
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l 100 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 100 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence 34566666666565554443333322 24678999999999999999999999999999999876542 2345
Q ss_pred HHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEe-cCC
Q 024550 74 RHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT-TNH 152 (266)
Q Consensus 74 ~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~t-tn~ 152 (266)
..+|..+.. ++++||++.+.... .......+++.|+..|+++... .. + +++ ||+
T Consensus 101 r~lf~~a~~--~~~~De~d~~~~~~-------------------~~~~e~rvl~~LL~~~dg~~~~--~~-v-~a~~TN~ 155 (444)
T 1g41_A 101 RDLTDSAMK--LVRQQEIAKNRARA-------------------EDVAEERILDALLPPAKNQWGE--VE-N-HDSHSST 155 (444)
T ss_dssp HHHHHHHHH--HHHHHHHHSCC----------------------------------------------------------
T ss_pred HHHHHHHHh--cchhhhhhhhhccc-------------------hhhHHHHHHHHHHHHhhccccc--cc-c-ccccccC
Confidence 555554432 34578877653211 1233467889999999988543 22 2 454 999
Q ss_pred CCCCcccccCCCcceeEEEcCCCCHH-HHHHHH
Q 024550 153 KERLDPALLRPGRMDMHINMSHCTPS-GFKMLA 184 (266)
Q Consensus 153 ~~~ld~al~r~~Rf~~~i~~~~p~~~-~~~~i~ 184 (266)
++.||++|+|||||+..|+++.|+.. .+.+|+
T Consensus 156 ~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 156 RQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999999999997 566654
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=4e-17 Score=144.75 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=108.4
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCC--cEEEEeCCcccC-----------------------------------
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--DVYDLELSNLLG----------------------------------- 69 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~--~~~~i~~~~~~~----------------------------------- 69 (266)
+..+++++|||||||||||++|+++|+.++. +++.+++..+..
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 4555679999999999999999999999974 777777644211
Q ss_pred --------------------hhhHHHHHHHcc-----------cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccc
Q 024550 70 --------------------NNDLRHILIATE-----------NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQ 118 (266)
Q Consensus 70 --------------------~~~l~~~~~~~~-----------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (266)
...+...+.... .++||||||+|.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~---------------------- 203 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI---------------------- 203 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH----------------------
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh----------------------
Confidence 112333332211 157999999998742
Q ss_pred cccchhhhhhhhhhhhccccCCCCceEEEEec-----------CCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHh
Q 024550 119 QKQYHITLSGLLNFIDGLWSSCGDERIIIFTT-----------NHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNY 187 (266)
Q Consensus 119 ~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt-----------n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~ 187 (266)
...+.|+..++.. ...++++++. |.+..++++|++ ||.. +.|+.|+.+++..++..+
T Consensus 204 -----~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 204 -----ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp -----HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHH
Confidence 2334445554432 2335555544 357789999999 9976 899999999999999998
Q ss_pred hCCCCCCcHHH-HHHHhhcCC-CCHHHHHHHHH
Q 024550 188 LGIAEHPLFVE-IEKLIATAK-VTPADVAEQLM 218 (266)
Q Consensus 188 ~~~~~~~~~~~-~~~l~~~~~-~s~~~i~~~l~ 218 (266)
+...+..+..+ +..++.... .+++++.+++.
T Consensus 272 ~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp HHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 87766555544 444555454 78888877763
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=1.3e-16 Score=130.43 Aligned_cols=151 Identities=18% Similarity=0.197 Sum_probs=108.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChhhHHHHHHH--------cccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNNDLRHILIA--------TENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~~l~~~~~~--------~~~~~vl~iDeid~l~~~~~ 99 (266)
+++|+||||||||++++++++.+ ...++.+++........+...+.. ...+.+|+|||+|.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 116 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--- 116 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---
Confidence 49999999999999999999876 466888888776654444433322 14578999999998743
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
...+.++..++.. ..++.+|++||.+..+++++.+ ||. .+.++.|+.++
T Consensus 117 ------------------------~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~ 165 (226)
T 2chg_A 117 ------------------------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA 165 (226)
T ss_dssp ------------------------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHH
T ss_pred ------------------------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHH
Confidence 1223344555432 2457888999999999999999 987 89999999999
Q ss_pred HHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 180 FKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 180 ~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
...++..++...+..+. ..+..++...+.++..+.+.+
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988765444443 334444444455666555544
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=3.1e-17 Score=142.08 Aligned_cols=130 Identities=18% Similarity=0.353 Sum_probs=96.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHH---------------H---HcccCCeeeeec
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHIL---------------I---ATENKSILVVED 90 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~---------------~---~~~~~~vl~iDe 90 (266)
..+||+||||||||++|+++|..+ +.+++.++++.+........++ . ....++||||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 469999999999999999999988 5679999998775432222221 1 123468999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC-------CceEEEEecCC-----------
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG-------DERIIIFTTNH----------- 152 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-------~~~ivi~ttn~----------- 152 (266)
+|.+.. ..++.|+..|+....... .++++|+|||.
T Consensus 128 i~~l~~---------------------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~ 180 (311)
T 4fcw_A 128 IEKAHP---------------------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQK 180 (311)
T ss_dssp GGGSCH---------------------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTS
T ss_pred hhhcCH---------------------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcc
Confidence 998742 244556666653321111 25779999998
Q ss_pred ---------------CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 153 ---------------KERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 153 ---------------~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
...++++|++ ||+..+.|+.|+.+++..|+..++..
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 181 GWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred cccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 4568889998 99999999999999999999988754
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=2.2e-17 Score=153.92 Aligned_cols=133 Identities=21% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh---------------hhHHHHHHHcc-cCCeeeeecchh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN---------------NDLRHILIATE-NKSILVVEDIDC 93 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~---------------~~l~~~~~~~~-~~~vl~iDeid~ 93 (266)
++..++|+||||||||++++++|..++.++..+++...... ..+...|..+. .++|+||||+|.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~ 186 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDK 186 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhh
Confidence 34579999999999999999999999999999998775421 12233444442 456999999999
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC-----------CCCceEEEEecCCCCCCcccccC
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-----------CGDERIIIFTTNHKERLDPALLR 162 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------~~~~~ivi~ttn~~~~ld~al~r 162 (266)
+.... .....+.|+..|+..... ....++||+|||.++.++++|++
T Consensus 187 l~~~~-----------------------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~ 243 (543)
T 3m6a_A 187 MSSDF-----------------------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD 243 (543)
T ss_dssp CC--------------------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH
T ss_pred hhhhh-----------------------ccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh
Confidence 86411 111334555555432110 01457999999999999999999
Q ss_pred CCcceeEEEcCCCCHHHHHHHHHHhh
Q 024550 163 PGRMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
||. .|+|+.|+.+++..|+..++
T Consensus 244 --R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 244 --RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp --HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred --hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 995 69999999999999999887
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=7.4e-17 Score=146.86 Aligned_cols=149 Identities=20% Similarity=0.293 Sum_probs=104.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc------ccCCeeeeecchhhHHHhHHHhhhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT------ENKSILVVEDIDCCIELQDRLSRAR 105 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~------~~~~vl~iDeid~l~~~~~~~~~~~ 105 (266)
.++|||||||||||++++++++.++.+++.+++... +...+...+..+ ..++||||||+|.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------- 120 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------- 120 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------
Confidence 579999999999999999999999999999998664 444555555443 3579999999998742
Q ss_pred hcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEec--CCCCCCcccccCCCcceeEEEcCCCCHHHHHHH
Q 024550 106 AANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTT--NHKERLDPALLRPGRMDMHINMSHCTPSGFKML 183 (266)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~tt--n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i 183 (266)
..++.|+..++. ..+++|++| |....++++|++ ||. .+.|+.|+.+++..+
T Consensus 121 ------------------~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 121 ------------------SQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQV 173 (447)
T ss_dssp ----------------------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHH
T ss_pred ------------------HHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHH
Confidence 134557777764 235666655 444688999999 985 688999999999999
Q ss_pred HHHhhCC-------CCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 184 ASNYLGI-------AEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 184 ~~~~~~~-------~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.+++.. ....+. ..+..++.....+.+++.+.+
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 9998865 222233 233444444445555555444
No 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1.1e-16 Score=142.71 Aligned_cols=142 Identities=21% Similarity=0.289 Sum_probs=93.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccC--------hhhHHHHHHHc------ccCCeeeeecchhhH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLG--------NNDLRHILIAT------ENKSILVVEDIDCCI 95 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~--------~~~l~~~~~~~------~~~~vl~iDeid~l~ 95 (266)
++.++||+||||||||++|+++|+.++.+++.+++..+.. ...+..++... ..++||||||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 4567999999999999999999999999999999887642 12234444332 258999999999987
Q ss_pred HHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-----------------CCCCceEEEEecCC------
Q 024550 96 ELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-----------------SCGDERIIIFTTNH------ 152 (266)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----------------~~~~~~ivi~ttn~------ 152 (266)
..+....... +......++.|+..|++... -...++++|+|+|.
T Consensus 151 ~~~~~~~~~~-------------~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~ 217 (376)
T 1um8_A 151 RLSENRSITR-------------DVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEI 217 (376)
T ss_dssp --------------------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHH
T ss_pred hhcCCCceec-------------ccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHH
Confidence 5321111000 11122356777777774310 00134577777762
Q ss_pred -----------------------------------CCCCcccccCCCcceeEEEcCCCCHHHHHHHHHH
Q 024550 153 -----------------------------------KERLDPALLRPGRMDMHINMSHCTPSGFKMLASN 186 (266)
Q Consensus 153 -----------------------------------~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~ 186 (266)
...+.++|++ ||+..+.|+.++.++...|+..
T Consensus 218 l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 218 IKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 0125677788 9989999999999999998874
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.70 E-value=5.3e-17 Score=141.85 Aligned_cols=156 Identities=15% Similarity=0.257 Sum_probs=108.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchhhHHHhHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~l~~~~~~ 100 (266)
..+++||||||||||++++++++.+ +.+++.+++..+... ............+++|||||++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~-- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKE-- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCH--
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCCh--
Confidence 4679999999999999999999998 899999998765321 0111222223458999999999875310
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC---CCcccccCCCcce--eEEEcCCC
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE---RLDPALLRPGRMD--MHINMSHC 175 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~---~ld~al~r~~Rf~--~~i~~~~p 175 (266)
.....++..++..... ...+|+++++.+. .++++|.+ ||. ..++++.
T Consensus 115 -----------------------~~~~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~- 166 (324)
T 1l8q_A 115 -----------------------RTQIEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL- 166 (324)
T ss_dssp -----------------------HHHHHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-
T ss_pred -----------------------HHHHHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-
Confidence 1222333333332222 3467777777765 68899999 886 7799999
Q ss_pred CHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHHH
Q 024550 176 TPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~l 217 (266)
+.+++..|+..++...+..+..+ +..++... .+.+++.+.+
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l 208 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKI 208 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHH
Confidence 99999999999987665555444 45555556 6777766655
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.3e-17 Score=139.83 Aligned_cols=131 Identities=13% Similarity=0.209 Sum_probs=95.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh----------------------hhHHH
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN----------------------NDLRH 75 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~----------------------~~l~~ 75 (266)
-..+.++|||||||||||++++.+++++ ...+++++|..+.+. ..+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3457789999999999999999999998 356888998775432 23455
Q ss_pred HHHHc----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecC
Q 024550 76 ILIAT----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTN 151 (266)
Q Consensus 76 ~~~~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn 151 (266)
.|... ..++|++|||+|.+. ....+..+++... ....++++|+++|
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~--------------------------~q~~L~~l~~~~~----~~~s~~~vI~i~n 171 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL--------------------------SEKILQYFEKWIS----SKNSKLSIICVGG 171 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC--------------------------CTHHHHHHHHHHH----CSSCCEEEEEECC
T ss_pred HHHHhhhccCCceEEEEecHHHhh--------------------------cchHHHHHHhccc----ccCCcEEEEEEec
Confidence 56543 346899999999873 1234444444322 2235689999999
Q ss_pred CCCC----CcccccCCCcce-eEEEcCCCCHHHHHHHHHHhhCC
Q 024550 152 HKER----LDPALLRPGRMD-MHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 152 ~~~~----ld~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
..+. +++++.+ ||. ..|.|+.++.++...|+++.+..
T Consensus 172 ~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 172 HNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred Ccccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 8764 4566677 886 57999999999999999888854
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.69 E-value=1.9e-16 Score=138.17 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=94.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHc----c---cCCeeeeecchhhHHHhHHHh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIAT----E---NKSILVVEDIDCCIELQDRLS 102 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~----~---~~~vl~iDeid~l~~~~~~~~ 102 (266)
.++.+|++||||||||++++++|+.++.++++++++... ...+...+... . .+.||+|||+|.+.+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------ 119 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------ 119 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------
Confidence 345788999999999999999999999999999988764 44444433321 1 578999999998851
Q ss_pred hhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHH
Q 024550 103 RARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKM 182 (266)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~ 182 (266)
....+.|+..++... ..+.+|+|||.+..+++++.+ ||. .+.|+.|+.+++.+
T Consensus 120 --------------------~~~~~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 120 --------------------AESQRHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIE 172 (324)
T ss_dssp --------------------HHHHHHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHH
Confidence 112344555555432 357889999999999999999 995 69999999999776
Q ss_pred HHHHhh
Q 024550 183 LASNYL 188 (266)
Q Consensus 183 i~~~~~ 188 (266)
|+..++
T Consensus 173 il~~~~ 178 (324)
T 3u61_B 173 MMKQMI 178 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=2.6e-17 Score=131.68 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=87.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHH---cccCCeee
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIA---TENKSILV 87 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~---~~~~~vl~ 87 (266)
..+.+++|+||||||||+++++++..+ +.+++.+++..+... ..+..++.. ...++||+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEE
Confidence 345679999999999999999999986 688888887665421 123344432 34577999
Q ss_pred eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccC
Q 024550 88 VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLR 162 (266)
Q Consensus 88 iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r 162 (266)
|||+|.+...... .......+.+...++. .++.+|++||.+. .+++++.+
T Consensus 121 iDe~~~l~~~~~~-------------------~~~~~~~~~l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 121 IDELHTMVGAGKA-------------------DGAMDAGNMLKPALAR------GELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp EETGGGGTT-------------------------CCCCHHHHHHHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred EeCHHHHhccCcc-------------------cchHHHHHHHHHhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 9999998642110 0001122222222221 3577888888775 78999999
Q ss_pred CCcceeEEEcCCCCHHHHHHHH
Q 024550 163 PGRMDMHINMSHCTPSGFKMLA 184 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~~~~~~i~ 184 (266)
||. .|+++.|+.+++.+|+
T Consensus 176 --r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 --RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TEE-EEECCCCCHHHHHTTC
T ss_pred --Hhc-eeecCCCCHHHHHHHh
Confidence 997 6999999999998765
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=8.2e-16 Score=142.64 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=103.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHH-------------Hc-------ccCCeeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILI-------------AT-------ENKSILVVE 89 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~-------------~~-------~~~~vl~iD 89 (266)
+++++||+||||||||++|+++|++++.+++.++++.......+...+. .. ..++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 4578999999999999999999999999999999988765433222221 11 357899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeE
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMH 169 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~ 169 (266)
|+|.+.. .....+..+++.++.. ...+++++++.....++ .+.+ |+ ..
T Consensus 156 Eid~l~~------------------------~~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~~--r~-~~ 203 (516)
T 1sxj_A 156 EVDGMSG------------------------GDRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFDR--VC-LD 203 (516)
T ss_dssp SGGGCCT------------------------TSTTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGTT--TS-EE
T ss_pred CCCccch------------------------hhHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhHh--ce-EE
Confidence 9998853 1111234445554432 23344444444434444 4554 44 68
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 170 INMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 170 i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
|.|+.|+.+++.+++.......+..+. +.+..++.....+.+.+.+.+
T Consensus 204 i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 204 IQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999999887755444333 345556665556666666655
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=1.3e-15 Score=125.88 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=107.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc-----
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE----- 81 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (266)
++.++|+||||||||++++.+++.++. .++.++.........+..++....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 124 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhc
Confidence 347999999999999999999988743 234444333222334555555432
Q ss_pred -cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 82 -NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 82 -~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
.+.+|+|||+|.+.. ..++.++..++.. +.++++|++||.+..+++++
T Consensus 125 ~~~~vlviDe~~~l~~---------------------------~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR---------------------------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSSEEEEEETGGGSCH---------------------------HHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHH
T ss_pred CCceEEEEECcccccH---------------------------HHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHH
Confidence 468999999997632 2334455555532 34688899999988899999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+ |+ ..++++.|+.++..+++..++...+.... ..+..++...+.+|..+.+.+
T Consensus 174 ~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 174 LS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp HT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 98 76 67999999999999999988866554443 334455555556777766654
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=2.4e-16 Score=138.03 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=92.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHH---------HHHccc---CCeeeeecchhhHHHh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHI---------LIATEN---KSILVVEDIDCCIELQ 98 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~---------~~~~~~---~~vl~iDeid~l~~~~ 98 (266)
+.++|||||||||||++++++|+.++.+++.+++........+... +..... .+||||||++.+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~-- 123 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA-- 123 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH--
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH--
Confidence 4579999999999999999999999999999987533222211100 000011 37999999998743
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc-------ccCCCCceEEEEecCCCC-----CCcccccCCCcc
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL-------WSSCGDERIIIFTTNHKE-----RLDPALLRPGRM 166 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~~ivi~ttn~~~-----~ld~al~r~~Rf 166 (266)
...+.|+..++.. ....+.++++|+|+|+.+ .++++|++ ||
T Consensus 124 -------------------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf 176 (331)
T 2r44_A 124 -------------------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RF 176 (331)
T ss_dssp -------------------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TS
T ss_pred -------------------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--he
Confidence 1223344444321 111234578888888553 38999999 99
Q ss_pred eeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 167 DMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 167 ~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
...+.++.|+.+++.+|++.+...
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCT
T ss_pred eEEEEcCCCCHHHHHHHHHhcccc
Confidence 989999999999999999988765
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.67 E-value=1.9e-15 Score=132.68 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=115.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPD 110 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~ 110 (266)
+..++|+|||||||||+++++|+.++.++...+...+.....+...+.....+.|+||||++.+.....+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~--------- 121 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEEL--------- 121 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHH---------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHH---------
Confidence 35699999999999999999999999998877776665556666666666678899999999886421111
Q ss_pred cccccccccccchhhhhhhhhhhhccc--------------cCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCC
Q 024550 111 FLIAGYEQQKQYHITLSGLLNFIDGLW--------------SSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCT 176 (266)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~ 176 (266)
++..+.... ...-..+.++++|+.+..|++++++ ||...+.++.|+
T Consensus 122 ------------------L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 122 ------------------LYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp ------------------HHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred ------------------HHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 111111000 0001235677899999999999999 999899999999
Q ss_pred HHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 177 PSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 177 ~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
.+++.+++++.....+.... +.+..++.....+++.+.+++
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 99999999988765555554 445566666778888776665
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=2.7e-16 Score=152.23 Aligned_cols=128 Identities=18% Similarity=0.299 Sum_probs=96.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChh-----hHHHHHHHcccCCeeeeecchhhHHHhHHHhhh
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNN-----DLRHILIATENKSILVVEDIDCCIELQDRLSRA 104 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~-----~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~ 104 (266)
++||+||||||||++|+++|..+ +.+++.++++.+.... .+...+. ...++|||||||+.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~-~~~~~vl~lDEi~~~~--------- 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR-RKPYSVVLLDAIEKAH--------- 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH-HCSSSEEEEECGGGSC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH-hCCCeEEEEeCccccC---------
Confidence 59999999999999999999998 6889999999886421 2233322 3457899999999763
Q ss_pred hhcCCccccccccccccchhhhhhhhhhhhccccC-------CCCceEEEEecCCCCC------------CcccccCCCc
Q 024550 105 RAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS-------CGDERIIIFTTNHKER------------LDPALLRPGR 165 (266)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~~ivi~ttn~~~~------------ld~al~r~~R 165 (266)
...++.|++.|+...-. ...+++||+|||.+.. +.++|++ |
T Consensus 593 ------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 593 ------------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp ------------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred ------------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 23556677777642211 1235789999996543 7889998 9
Q ss_pred ceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 166 MDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 166 f~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
|+..|.|+.|+.+++..|+..++..
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999888743
No 53
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=1.2e-15 Score=132.18 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=109.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChhhHHHHHHH----c----ccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNNDLRHILIA----T----ENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~~l~~~~~~----~----~~~~vl~iDeid~l~~~~~ 99 (266)
++|||||||||||++++++++.+ +.+++.++++...+...+...+.. . ..+.|++|||+|.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 116 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--- 116 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---
Confidence 49999999999999999999986 456788888765443333222221 1 3478999999998742
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
...+.|+..++. .+..+++|++||.+..+++++.+ ||. .+.|+.|+.++
T Consensus 117 ------------------------~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 117 ------------------------DAQAALRRTMEM----YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA 165 (319)
T ss_dssp ------------------------HHHHTTGGGTSS----SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHH
T ss_pred ------------------------HHHHHHHHHHHh----cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHH
Confidence 123445555543 23568889999999999999999 885 79999999999
Q ss_pred HHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 180 FKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
+..++..++...+..+.. .+..++...+.+++.+.+.+
T Consensus 166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999888776665544 44555555566666665554
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=4.6e-16 Score=150.53 Aligned_cols=128 Identities=18% Similarity=0.336 Sum_probs=98.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccCh-------------------hhHHHHHHHcccCCeeeeecch
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGN-------------------NDLRHILIATENKSILVVEDID 92 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~-------------------~~l~~~~~~~~~~~vl~iDeid 92 (266)
.++||+||||||||++|+++|..++.+++.++++.+... ..+...+. ...++||||||++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-KHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH-HCSSEEEEEETGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH-hCCCcEEEEeCcc
Confidence 369999999999999999999999999999999877531 11223332 2457999999999
Q ss_pred hhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC--C-----CCceEEEEecCCCC-----------
Q 024550 93 CCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS--C-----GDERIIIFTTNHKE----------- 154 (266)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~-----~~~~ivi~ttn~~~----------- 154 (266)
.+. ..+++.|+..|+...-. . -.+++||+|||...
T Consensus 568 ~~~---------------------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~ 620 (758)
T 1r6b_X 568 KAH---------------------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLI 620 (758)
T ss_dssp GSC---------------------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC----------
T ss_pred ccC---------------------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCcc
Confidence 763 23556677777632111 0 13578999999753
Q ss_pred --------------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 155 --------------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 155 --------------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
.++++|++ ||+..|.|+.|+.+++..|+..++.
T Consensus 621 ~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 621 HQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp -------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 57889999 9999999999999999999998885
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=1.4e-15 Score=135.33 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=91.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc-----------CCcEEEEeCCccc-Ch-----------------------hh-H
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL-----------KFDVYDLELSNLL-GN-----------------------ND-L 73 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~-----------~~~~~~i~~~~~~-~~-----------------------~~-l 73 (266)
.+++++|+||||||||++++++++.+ +.+++.+++.... +. .. +
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 35689999999999999999999987 8899999976543 21 11 2
Q ss_pred HHHHHHccc-CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhh-hhhhhhhhhccccCCCCceEEEEecC
Q 024550 74 RHILIATEN-KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHIT-LSGLLNFIDGLWSSCGDERIIIFTTN 151 (266)
Q Consensus 74 ~~~~~~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~~ivi~ttn 151 (266)
..++..... +.||+|||+|.+.. ...... +..++... .++.+|+|||
T Consensus 124 ~~l~~~l~~~~~vlilDEi~~l~~-----------------------~~~~~~~l~~l~~~~--------~~~~iI~~t~ 172 (384)
T 2qby_B 124 DKIKNGTRNIRAIIYLDEVDTLVK-----------------------RRGGDIVLYQLLRSD--------ANISVIMISN 172 (384)
T ss_dssp HHHHHHHSSSCEEEEEETTHHHHH-----------------------STTSHHHHHHHHTSS--------SCEEEEEECS
T ss_pred HHHHHHhccCCCEEEEECHHHhcc-----------------------CCCCceeHHHHhcCC--------cceEEEEEEC
Confidence 222222222 33999999998853 111122 33333322 3588889998
Q ss_pred CC---CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 152 HK---ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 152 ~~---~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
.+ ..+++++.+ ||...|+|+.|+.++...++..++.
T Consensus 173 ~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 173 DINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp STTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 76 678999998 8877999999999999999998774
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=1.7e-16 Score=144.39 Aligned_cols=158 Identities=17% Similarity=0.284 Sum_probs=109.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccCh-------hhHHHHHHHcc-cCCeeeeecchhhHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGN-------NDLRHILIATE-NKSILVVEDIDCCIEL 97 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~-------~~l~~~~~~~~-~~~vl~iDeid~l~~~ 97 (266)
..+++||||||||||++++++++.+ +.+++.+++..+... .....+..... .+.||||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4679999999999999999999988 888999988765321 01112222334 6899999999987531
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCC---CcccccCCCcce--eEEEc
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKER---LDPALLRPGRMD--MHINM 172 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~---ld~al~r~~Rf~--~~i~~ 172 (266)
......++..++..... ...+||+|.+.+.. ++++|++ ||. ..+.+
T Consensus 210 -------------------------~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l 260 (440)
T 2z4s_A 210 -------------------------TGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKL 260 (440)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBC
T ss_pred -------------------------hHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEe
Confidence 01223344444433322 34566655565654 7899999 885 78999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 173 SHCTPSGFKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 173 ~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
+.|+.+++..|+..++...+..+. +.+..++.....+++++.+++
T Consensus 261 ~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 261 EPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999988865444443 334555666677888877766
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=3e-16 Score=130.36 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=104.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
.+.+++|+||||||||+++++++..+. .+++.+++..+... +...+.....+.+|+|||++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~~~~~~~~-------- 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEGLEQFDLICIDDVDAVAGHP-------- 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTTGGGSSEEEEETGGGGTTCH--------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHhccCCCEEEEeccccccCCH--------
Confidence 456899999999999999999999874 77888888765421 12223334568999999999874310
Q ss_pred cCCccccccccccccchhhhhhhhhhhhccccCCCCce-EEEEecCCCC---CCcccccCCCcce--eEEEcCCCCHHHH
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDER-IIIFTTNHKE---RLDPALLRPGRMD--MHINMSHCTPSGF 180 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~-ivi~ttn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~~~ 180 (266)
.....++..++..... ... +|++++..+. .+++++.+ ||. ..++++.|+.+++
T Consensus 121 -----------------~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~ 179 (242)
T 3bos_A 121 -----------------LWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEK 179 (242)
T ss_dssp -----------------HHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGH
T ss_pred -----------------HHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHH
Confidence 0122333443333221 223 4444544444 45688888 875 8899999999999
Q ss_pred HHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 181 KMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 181 ~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
.+++..++...+..+.. .+..++.....+.+++.+.+
T Consensus 180 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 180 LAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 99999988765554443 34455555556666666654
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=2.3e-15 Score=133.57 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=105.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChh----------------------h-HHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNN----------------------D-LRHIL 77 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~----------------------~-l~~~~ 77 (266)
.+.+++|+||||||||++++++++.+ +.+++.+++....+.. . +..++
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45679999999999999999999988 7889999987654321 1 12222
Q ss_pred HHc---ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-
Q 024550 78 IAT---ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK- 153 (266)
Q Consensus 78 ~~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~- 153 (266)
... ..+++|+|||+|.+.... .....+..+++.+..... +.++.+|++||.+
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~----------------------~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRP----------------------GGQDLLYRITRINQELGD--RVWVSLVGITNSLG 178 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHST----------------------THHHHHHHHHHGGGCC-------CEEEEECSCST
T ss_pred HHHhccCCeEEEEEccHhhhcccC----------------------CCChHHHhHhhchhhcCC--CceEEEEEEECCCc
Confidence 222 236799999999985410 012344444444432210 2468899999877
Q ss_pred --CCCcccccCCCccee-EEEcCCCCHHHHHHHHHHhhCC--CCCCcH-HHHHHHhhcC---CCCHHHHHHHH
Q 024550 154 --ERLDPALLRPGRMDM-HINMSHCTPSGFKMLASNYLGI--AEHPLF-VEIEKLIATA---KVTPADVAEQL 217 (266)
Q Consensus 154 --~~ld~al~r~~Rf~~-~i~~~~p~~~~~~~i~~~~~~~--~~~~~~-~~~~~l~~~~---~~s~~~i~~~l 217 (266)
..+++++.+ ||.. .+.|+.|+.+++..++..++.. .+.... ..+..++... ..++..+.+++
T Consensus 179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 778899999 8875 8999999999999999988753 222222 2223333332 26666655554
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=1.2e-14 Score=133.21 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC---hhhHHHHHHHcc--cCCeeeeecchhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG---NNDLRHILIATE--NKSILVVEDIDCC 94 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~---~~~l~~~~~~~~--~~~vl~iDeid~l 94 (266)
...++||+||||||||++++++|..+ +.+++.+++..... ...+..+|.... .++|||||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----- 274 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID----- 274 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-----
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----
Confidence 45679999999999999999999997 78888888762211 234566665543 57899999
Q ss_pred HHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCCCcceeE
Q 024550 95 IELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRPGRMDMH 169 (266)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~~Rf~~~ 169 (266)
.. ....+.|+..|+. ..+.+|++||.+. .++++|.+ ||. .
T Consensus 275 ~~--------------------------~~a~~~L~~~L~~------g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~ 319 (468)
T 3pxg_A 275 AA--------------------------IDASNILKPSLAR------GELQCIGATTLDEYRKYIEKDAALER--RFQ-P 319 (468)
T ss_dssp C----------------------------------CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-E
T ss_pred Cc--------------------------hhHHHHHHHhhcC------CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-c
Confidence 10 0122334444432 4588999999887 68999999 997 4
Q ss_pred EEcCCCCHHHHHHHHHHhhCC
Q 024550 170 INMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 170 i~~~~p~~~~~~~i~~~~~~~ 190 (266)
|.|+.|+.+++..|++.+...
T Consensus 320 i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 320 IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EECCCCCHHHHHHHHHHTTTT
T ss_pred ceeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988866
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=6.7e-15 Score=127.66 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=107.8
Q ss_pred eEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccChhhHHHHHHHc--------c-cCCeeeeecchhhHHHhH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLGNNDLRHILIAT--------E-NKSILVVEDIDCCIELQD 99 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~~~~l~~~~~~~--------~-~~~vl~iDeid~l~~~~~ 99 (266)
+|||||||||||++++++++.+ +.+++.+++....+...+...+... . .+.|++|||+|.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--- 121 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--- 121 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---
Confidence 9999999999999999999986 4568888887654444454444321 2 368999999998742
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
...+.|+..++.. +...++|.+||.+..+++++.+ ||. .+.|+.|+.++
T Consensus 122 ------------------------~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~ 170 (323)
T 1sxj_B 122 ------------------------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDED 170 (323)
T ss_dssp ------------------------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHH
T ss_pred ------------------------HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHH
Confidence 1234455555542 2457788888999999999999 875 79999999999
Q ss_pred HHHHHHHhhCCCCCCcH-HHHHHHhhcCCCCHHHHHHHH
Q 024550 180 FKMLASNYLGIAEHPLF-VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 180 ~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~i~~~l 217 (266)
...++..++...+..+. ..+..++...+.+++.+.+.+
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 171 VLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988765544443 334455555556666655554
No 61
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.61 E-value=1.5e-14 Score=126.92 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=109.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCC---cccChhhHHHHHHHcc-
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELS---NLLGNNDLRHILIATE- 81 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~---~~~~~~~l~~~~~~~~- 81 (266)
.++.+|||||||+|||++++++|+.+.+ .++.++.. ...+...++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 4668999999999999999999998753 35556553 2223445666665542
Q ss_pred -----cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCC
Q 024550 82 -----NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERL 156 (266)
Q Consensus 82 -----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~l 156 (266)
...|++|||+|.+.. ...+.|+..++. ++..+++|.+||.++.+
T Consensus 103 ~~~~~~~kvviIdead~l~~---------------------------~a~naLLk~lEe----p~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD---------------------------AAANALLKTLEE----PPAETWFFLATREPERL 151 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH---------------------------HHHHHHHHHHTS----CCTTEEEEEEESCGGGS
T ss_pred ccccCCcEEEEECchhhcCH---------------------------HHHHHHHHHhcC----CCCCeEEEEEeCChHhC
Confidence 357999999998742 234567777664 34568889999999999
Q ss_pred cccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHHH
Q 024550 157 DPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 157 d~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~l 217 (266)
++++.+ || ..+.|+.|+.++...++..... .....+..++...+.+++.+.+.+
T Consensus 152 ~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 152 LATLRS--RC-RLHYLAPPPEQYAVTWLSREVT----MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CHHHHT--TS-EEEECCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred cHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcC----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999 88 4699999999999998887761 123445556666667777766654
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=5.3e-15 Score=144.78 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=85.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHHcc---cCCeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIATE---NKSILVV 88 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~~~---~~~vl~i 88 (266)
.+.+++|+||||||||++++++|..+ +.+++.+++..+... ..+..++.... .++||||
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~I 269 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 269 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45679999999999999999999987 889999998877532 23555555543 5789999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC----CCcccccCCC
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE----RLDPALLRPG 164 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~----~ld~al~r~~ 164 (266)
||+|.+.+.....+ .....+.+...+.. ..+.+|++||.++ .++++|.+
T Consensus 270 DEi~~l~~~~~~~g-------------------~~~~~~~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r-- 322 (854)
T 1qvr_A 270 DELHTVVGAGKAEG-------------------AVDAGNMLKPALAR------GELRLIGATTLDEYREIEKDPALER-- 322 (854)
T ss_dssp CCC--------------------------------------HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred ecHHHHhccCCccc-------------------hHHHHHHHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--
Confidence 99999875322110 01122223333332 3577888888764 47999999
Q ss_pred cceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 165 RMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 165 Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
||.. |.|+.|+.+++..|++.++.
T Consensus 323 Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 323 RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 9986 99999999999999986654
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=4.4e-15 Score=129.02 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=106.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCcccChhhHHHHHH---H-c----ccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNLLGNNDLRHILI---A-T----ENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~~~~~~l~~~~~---~-~----~~~~vl~iDeid~l~~~~~ 99 (266)
++|||||||||||++++++++.+. ..++.+++++..+...+...+. . . ..+.|++|||+|.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--- 124 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--- 124 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---
Confidence 499999999999999999999863 3477888765432222222221 1 1 3478999999998742
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
...+.|+..++.. +..+.+|++||.+..+++++.+ ||. .+.|+.|+.++
T Consensus 125 ------------------------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~ 173 (327)
T 1iqp_A 125 ------------------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDED 173 (327)
T ss_dssp ------------------------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHH
T ss_pred ------------------------HHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHH
Confidence 1234455665542 2457888899999999999998 886 79999999999
Q ss_pred HHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 180 FKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
...++..++...+..... .+..++...+.+++.+.+.+
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999888766655543 34445555556676666554
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=1.2e-14 Score=128.74 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=111.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC------------------------cEEEEeCCcccChhhHHHHHHHcc-----
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DVYDLELSNLLGNNDLRHILIATE----- 81 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~------------------------~~~~i~~~~~~~~~~l~~~~~~~~----- 81 (266)
++.+||+||||||||++++++++.++. .++.++.........+..++....
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 117 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence 457999999999999999999998854 245555443233345666665543
Q ss_pred -cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 82 -NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 82 -~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
.+.|++|||+|.+.. ...+.|+..++.. +..+++|++|+.+..+.+++
T Consensus 118 ~~~~vliiDe~~~l~~---------------------------~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR---------------------------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSSEEEEEECGGGSCH---------------------------HHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHH
T ss_pred CCeEEEEEECcchhcH---------------------------HHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHH
Confidence 357999999998732 2345566666542 35688888899888899999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
.+ |+ ..+.|+.|+.++...++..++...+..... .+..++...+.++..+.+.+
T Consensus 167 ~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred Hh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 98 87 679999999999999999888665555443 34556666677777776665
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=7.7e-15 Score=129.03 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=107.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC------CcEEEEeCCcccChhhHHHHH---HHc---------------ccCCeeee
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK------FDVYDLELSNLLGNNDLRHIL---IAT---------------ENKSILVV 88 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~------~~~~~i~~~~~~~~~~l~~~~---~~~---------------~~~~vl~i 88 (266)
++|||||||||||++++++++.++ ..++.+++++..+...+...+ ... ..+.||+|
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 139 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEE
Confidence 499999999999999999999864 458888887754433332222 211 23469999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCccee
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDM 168 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~ 168 (266)
||+|.+.. ...+.|+..++.. .....+|.+||.+..+++++.+ ||.
T Consensus 140 DE~~~l~~---------------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~l~s--R~~- 185 (353)
T 1sxj_D 140 DEADSMTA---------------------------DAQSALRRTMETY----SGVTRFCLICNYVTRIIDPLAS--QCS- 185 (353)
T ss_dssp TTGGGSCH---------------------------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--HSE-
T ss_pred ECCCccCH---------------------------HHHHHHHHHHHhc----CCCceEEEEeCchhhCcchhhc--cCc-
Confidence 99998743 1234456666543 2346677788999999999999 985
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCCCcHH-HHHHHhhcCCCCHHHHHHHH
Q 024550 169 HINMSHCTPSGFKMLASNYLGIAEHPLFV-EIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 169 ~i~~~~p~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~i~~~l 217 (266)
.+.|+.|+.++...++...+...+..+.. .+..++.....+++.+.+.+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 79999999999999999888666555443 34555555556666665555
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=1.3e-15 Score=121.42 Aligned_cols=121 Identities=23% Similarity=0.302 Sum_probs=80.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccCh--------hhHHHHHHH---cccCCeee
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLGN--------NDLRHILIA---TENKSILV 87 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~~--------~~l~~~~~~---~~~~~vl~ 87 (266)
..+.+++|+||||||||+++++++..+ +.+++.+++..+... ..+..++.. ...+.+|+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 345679999999999999999999987 778888877654311 123333333 23568999
Q ss_pred eecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccC
Q 024550 88 VEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLR 162 (266)
Q Consensus 88 iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r 162 (266)
|||+|.+...... ........+.+...++. ..+++|++||.+. .+++++.+
T Consensus 121 iDe~~~l~~~~~~------------------~~~~~~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 121 IDEIHTVVGAGAV------------------AEGALDAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp ETTGGGGSSSSSS------------------CTTSCCTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred EeCHHHhcccccc------------------cccchHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999988531100 00011222333333332 4578888888764 68999999
Q ss_pred CCcceeEEEcCCCC
Q 024550 163 PGRMDMHINMSHCT 176 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~ 176 (266)
||.. |+++.|+
T Consensus 177 --R~~~-i~i~~p~ 187 (187)
T 2p65_A 177 --RFQQ-ILVEQPS 187 (187)
T ss_dssp --HEEE-EECCSCC
T ss_pred --hcCc-ccCCCCC
Confidence 9985 9999886
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=3e-14 Score=126.69 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=104.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccChhh--------------------------HHHHHHHccc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGNND--------------------------LRHILIATEN 82 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~~~--------------------------l~~~~~~~~~ 82 (266)
.++|+||||||||+++++++..+ +..++.+++....+... +...+.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999998 67888999776543211 1111222234
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC---CCCccc
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK---ERLDPA 159 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~---~~ld~a 159 (266)
+.||+|||++.+. ...+..|+..++........++.+|++||.+ ..+++.
T Consensus 126 ~~vlilDE~~~l~---------------------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 126 YMFLVLDDAFNLA---------------------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp CEEEEEETGGGSC---------------------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred eEEEEEECccccc---------------------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 7799999999772 1234444455443221001357888888887 677888
Q ss_pred ccCCCccee-EEEcCCCCHHHHHHHHHHhhCC--CCCCc-HHHHHHHhhcC---------CCCHHHHHHHH
Q 024550 160 LLRPGRMDM-HINMSHCTPSGFKMLASNYLGI--AEHPL-FVEIEKLIATA---------KVTPADVAEQL 217 (266)
Q Consensus 160 l~r~~Rf~~-~i~~~~p~~~~~~~i~~~~~~~--~~~~~-~~~~~~l~~~~---------~~s~~~i~~~l 217 (266)
+.+ ||.. .+.|+.++.++...++...+.. ....+ ...+..++... ...+..+.+.+
T Consensus 179 ~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 179 TRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp HHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred hhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 888 8875 7999999999999999887753 11122 23344444443 46666666655
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.58 E-value=1.5e-14 Score=127.10 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=82.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCC---------------------------------cEEEEeCCcc----cChhhH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKF---------------------------------DVYDLELSNL----LGNNDL 73 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~---------------------------------~~~~i~~~~~----~~~~~l 73 (266)
..++|||||||||||++|+++++.++. +++.+..... .+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 346999999999999999999998863 1222211110 011011
Q ss_pred HHHHHHc-----------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc---ccC
Q 024550 74 RHILIAT-----------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL---WSS 139 (266)
Q Consensus 74 ~~~~~~~-----------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~ 139 (266)
...+... ..++||||||+|.+.. ..++.|+..++.. ...
T Consensus 125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---------------------------~~~~~Ll~~le~~~~~~~~ 177 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLED---------------------------HIVDLLLDVAQSGENVVER 177 (350)
T ss_dssp HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------------------------HHHHHHHHHHHHSEEEECC
T ss_pred hhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------------------------HHHHHHHHHHhcCceEEEe
Confidence 2222221 1378999999998753 1233444444421 000
Q ss_pred ------CCCceEEEEecCCCC-CCcccccCCCcceeEEEcCCC-CHHHHHHHHHHh
Q 024550 140 ------CGDERIIIFTTNHKE-RLDPALLRPGRMDMHINMSHC-TPSGFKMLASNY 187 (266)
Q Consensus 140 ------~~~~~ivi~ttn~~~-~ld~al~r~~Rf~~~i~~~~p-~~~~~~~i~~~~ 187 (266)
.+..+++|+|||..+ .++++|++ ||+..++++.| +.+.+..|+.+.
T Consensus 178 ~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 178 DGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp TTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred cceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 012588999999744 89999999 99999999999 677777888764
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=5.6e-14 Score=135.96 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCccc---ChhhHHHHHHHcc--cCCeeeeecchh
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLL---GNNDLRHILIATE--NKSILVVEDIDC 93 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~---~~~~l~~~~~~~~--~~~vl~iDeid~ 93 (266)
..+.++|||||||||||++|+++|..+ +.+++.+++..-. ....+..+|..+. .++||||| .
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~- 275 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID--A- 275 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC--C-
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc--C-
Confidence 345689999999999999999999997 7888888772111 1235666666543 58999999 1
Q ss_pred hHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCCCccee
Q 024550 94 CIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRPGRMDM 168 (266)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~~Rf~~ 168 (266)
. ....+.++..++. ..+.+|++||... .++++|.| || .
T Consensus 276 --~--------------------------~~~~~~L~~~l~~------~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~ 318 (758)
T 3pxi_A 276 --A--------------------------IDASNILKPSLAR------GELQCIGATTLDEYRKYIEKDAALER--RF-Q 318 (758)
T ss_dssp ------------------------------------CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHH--SE-E
T ss_pred --c--------------------------hhHHHHHHHHHhc------CCEEEEeCCChHHHHHHhhccHHHHh--hC-c
Confidence 0 0122334444442 4688999999887 78999999 99 5
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC
Q 024550 169 HINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 169 ~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
.|.|+.|+.+++..|++.+...
T Consensus 319 ~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999987765
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=2.1e-14 Score=127.17 Aligned_cols=132 Identities=17% Similarity=0.246 Sum_probs=92.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc------CCcEEEEeCCcccC----------------------hhh-HHHH---H
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL------KFDVYDLELSNLLG----------------------NND-LRHI---L 77 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~------~~~~~~i~~~~~~~----------------------~~~-l~~~---~ 77 (266)
.+..++|+||||||||++++.+++.+ +.+++.+++..... ... +..+ +
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999988 88899988653221 111 1122 2
Q ss_pred HHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC---C
Q 024550 78 IATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK---E 154 (266)
Q Consensus 78 ~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~---~ 154 (266)
.....+.||+|||++.+.. ......+..++..++.. ...++.+|++||.+ .
T Consensus 124 ~~~~~~~vlilDE~~~l~~-----------------------~~~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVK-----------------------KYNDDILYKLSRINSEV---NKSKISFIGITNDVKFVD 177 (386)
T ss_dssp HTCCSCEEEEEETHHHHHH-----------------------SSCSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGG
T ss_pred hccCCeEEEEEcChhhhhc-----------------------cCcCHHHHHHhhchhhc---CCCeEEEEEEECCCChHh
Confidence 2223478999999998853 11123455555555433 12468888888876 4
Q ss_pred CCcccccCCCcce-eEEEcCCCCHHHHHHHHHHhhC
Q 024550 155 RLDPALLRPGRMD-MHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 155 ~ld~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
.+++.+.+ ||. ..|.|+.++.++..+++..++.
T Consensus 178 ~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 178 LLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp GCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 67788888 775 4899999999999999988764
No 71
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.56 E-value=7.4e-15 Score=113.54 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=76.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARA 106 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~ 106 (266)
.+..+||+||||||||++|++++... +.+++ ++|..+.........+..+ .+++|||||+|.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a-~~g~l~ldei~~l~~---------- 90 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA-QGGTLVLSHPEHLTR---------- 90 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH-TTSCEEEECGGGSCH----------
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc-CCcEEEEcChHHCCH----------
Confidence 34579999999999999999999987 77899 9999887665555555544 568999999998843
Q ss_pred cCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-------CCCcccccCCCcce-eEEEcCC
Q 024550 107 ANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-------ERLDPALLRPGRMD-MHINMSH 174 (266)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-------~~ld~al~r~~Rf~-~~i~~~~ 174 (266)
.....++..|... ...+.+|+|||.+ ..+.+.|.. |+. ..|++|.
T Consensus 91 -----------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 91 -----------------EQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp -----------------HHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCCCHHHHH--HHHHHEEECCC
T ss_pred -----------------HHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCCCHHHHH--HhcCCEEeCCC
Confidence 1234455555332 2346788888864 234555555 543 3466654
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.53 E-value=5.4e-14 Score=119.23 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=84.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCcccChhhHHH-HHH-----------------HcccCCeeeee
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLLGNNDLRH-ILI-----------------ATENKSILVVE 89 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~~~~~l~~-~~~-----------------~~~~~~vl~iD 89 (266)
+.++||+||||||||++|++++..+. .+++.++|+.+.. ..+.. +|. ....+++||||
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lD 107 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------CCCCHHHHTTTSEEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCcccccccccccccchhhhcCCcEEEEe
Confidence 46799999999999999999999874 6899999998742 22211 111 11246899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-c------CCCCceEEEEecCCC-------CC
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-S------SCGDERIIIFTTNHK-------ER 155 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~------~~~~~~ivi~ttn~~-------~~ 155 (266)
|++.+.. ..+..|+..++... . .....+.+|+|||.+ ..
T Consensus 108 Ei~~l~~---------------------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 108 ELATAPM---------------------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp SGGGSCH---------------------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred chHhcCH---------------------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 9998753 12334455554211 0 011346788899874 34
Q ss_pred CcccccCCCcce-eEEEcCCCCH--HHHHHHHHHhh
Q 024550 156 LDPALLRPGRMD-MHINMSHCTP--SGFKMLASNYL 188 (266)
Q Consensus 156 ld~al~r~~Rf~-~~i~~~~p~~--~~~~~i~~~~~ 188 (266)
+.++|.+ ||. ..|.+|.... ++...++.+++
T Consensus 161 ~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 161 FRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp SCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 6788998 985 4566666654 45566666554
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1e-13 Score=121.79 Aligned_cols=130 Identities=24% Similarity=0.328 Sum_probs=93.6
Q ss_pred eEEecCCCCChHHHHHHHHHHcCC-----cEEEEeCCcccChhhHHHHHHH---c-----ccCCeeeeecchhhHHHhHH
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKF-----DVYDLELSNLLGNNDLRHILIA---T-----ENKSILVVEDIDCCIELQDR 100 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~-----~~~~i~~~~~~~~~~l~~~~~~---~-----~~~~vl~iDeid~l~~~~~~ 100 (266)
++||||||||||++++++|+.+.. .+..+++++..+...++..+.. . ....|++|||+|.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---- 124 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---- 124 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----
Confidence 999999999999999999998732 4677777654443333333221 1 1368999999998742
Q ss_pred HhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCHHHH
Q 024550 101 LSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTPSGF 180 (266)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~ 180 (266)
...+.|+..++.. +....+|.+||.+..+.+++.+ ||. .+.|+.++.++.
T Consensus 125 -----------------------~~~~~L~~~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~ 174 (340)
T 1sxj_C 125 -----------------------AAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAI 174 (340)
T ss_dssp -----------------------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHH
T ss_pred -----------------------HHHHHHHHHHhcC----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHH
Confidence 1234456666543 2456778889999999999999 885 689999999999
Q ss_pred HHHHHHhhCCCCCCcHH
Q 024550 181 KMLASNYLGIAEHPLFV 197 (266)
Q Consensus 181 ~~i~~~~~~~~~~~~~~ 197 (266)
..++...+...+..+..
T Consensus 175 ~~~l~~~~~~~~~~i~~ 191 (340)
T 1sxj_C 175 ERRIANVLVHEKLKLSP 191 (340)
T ss_dssp HHHHHHHHHTTTCCBCH
T ss_pred HHHHHHHHHHcCCCCCH
Confidence 98888877555544443
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=2e-14 Score=140.71 Aligned_cols=128 Identities=20% Similarity=0.341 Sum_probs=95.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChh-------------------hHHHHHHHcccCCeeeee
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNN-------------------DLRHILIATENKSILVVE 89 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~-------------------~l~~~~~~~~~~~vl~iD 89 (266)
.++||+||||||||++|++++..+ +.+++.++|+.+.... .+...+. ...++|||||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~-~~~~~vl~lD 667 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-RRPYSVILFD 667 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHH-HCSSEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHH-hCCCeEEEEe
Confidence 469999999999999999999998 7899999998775421 1122221 1346899999
Q ss_pred cchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCC-------CCceEEEEecCCC---------
Q 024550 90 DIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSC-------GDERIIIFTTNHK--------- 153 (266)
Q Consensus 90 eid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~ivi~ttn~~--------- 153 (266)
|++.+. ..+++.|+..|+...-.. -.+++||+|||..
T Consensus 668 Ei~~l~---------------------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~ 720 (854)
T 1qvr_A 668 EIEKAH---------------------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQ 720 (854)
T ss_dssp SGGGSC---------------------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHH
T ss_pred cccccC---------------------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcc
Confidence 999763 235566777776332111 1357899999972
Q ss_pred -----------------CCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 154 -----------------ERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 154 -----------------~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
..+.++|+. ||+..+.|+.|+.+++..|+..++.
T Consensus 721 ~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 721 KGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 346678888 9998999999999999999988875
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=8.7e-14 Score=122.54 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=102.1
Q ss_pred eEEecCCCCChHHHHHHHHHHcCC-----------------------------cEEEEeCCcccChh--hHHHHHHH---
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKF-----------------------------DVYDLELSNLLGNN--DLRHILIA--- 79 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~-----------------------------~~~~i~~~~~~~~~--~l~~~~~~--- 79 (266)
++|+||+|||||++++++++.+.. .++.++........ .+...+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 999999999999999999996421 13334333221111 23343332
Q ss_pred -------------cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEE
Q 024550 80 -------------TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERII 146 (266)
Q Consensus 80 -------------~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~iv 146 (266)
..++.|++|||++.+.. ...+.++..++.. ..+..+
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---------------------------~~~~~L~~~le~~----~~~~~~ 167 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTK---------------------------DAQAALRRTMEKY----SKNIRL 167 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCH---------------------------HHHHHHHHHHHHS----TTTEEE
T ss_pred hccccccccccccCCCCeEEEEeCccccCH---------------------------HHHHHHHHHHHhh----cCCCEE
Confidence 12456999999998632 2334556666543 235788
Q ss_pred EEecCCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcH--HHHHHHhhcCCCCHHHHHHHH
Q 024550 147 IFTTNHKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLF--VEIEKLIATAKVTPADVAEQL 217 (266)
Q Consensus 147 i~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~~~~s~~~i~~~l 217 (266)
|.+||.+..+.+++.+ || ..+.|+.|+.+++..++.......+..+. ..+..++...+.+++++.+.+
T Consensus 168 Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999999 88 77999999999999999988866554443 344555565667777777766
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=6.1e-14 Score=135.70 Aligned_cols=135 Identities=24% Similarity=0.322 Sum_probs=92.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----------CCcEEEEeCCcccC--------hhhHHHHHHHcc--cCCeeee
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDVYDLELSNLLG--------NNDLRHILIATE--NKSILVV 88 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----------~~~~~~i~~~~~~~--------~~~l~~~~~~~~--~~~vl~i 88 (266)
..+.++||+||||||||++++++|..+ +..++.+++..+.. ...+..++.... .++||||
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~I 284 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI 284 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 346789999999999999999999987 66788877766542 234566666554 3799999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCC-----CCcccccCC
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKE-----RLDPALLRP 163 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~-----~ld~al~r~ 163 (266)
||+|.+.+..... ....... +.+..+... ..+.+|++||.++ .+|++|.+
T Consensus 285 DEi~~l~~~~~~~------------------~~~~~~~----~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~- 339 (758)
T 1r6b_X 285 DEIHTIIGAGAAS------------------GGQVDAA----NLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_dssp TTTTTTTTSCCSS------------------SCHHHHH----HHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG-
T ss_pred echHHHhhcCCCC------------------cchHHHH----HHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh-
Confidence 9999986411100 0011112 222222222 4578888888643 46899999
Q ss_pred CcceeEEEcCCCCHHHHHHHHHHhhCC
Q 024550 164 GRMDMHINMSHCTPSGFKMLASNYLGI 190 (266)
Q Consensus 164 ~Rf~~~i~~~~p~~~~~~~i~~~~~~~ 190 (266)
||. .+.|+.|+.+++..|++.+...
T Consensus 340 -Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 340 -RFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp -GEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred -Cce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 997 6999999999999999876643
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.51 E-value=7.2e-14 Score=121.11 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHH-HHHH-----------------HcccCCeeee
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLR-HILI-----------------ATENKSILVV 88 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~-~~~~-----------------~~~~~~vl~i 88 (266)
.+.++||+||||||||++|++++... +.+++.++|..+... .+. .+|. ....+++|||
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~-l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~L 102 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNES-LLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 102 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHH-HHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChH-HHHHHhcCccccccCchhhhhcCHHHhcCCCEEEE
Confidence 35679999999999999999999976 678999999887421 111 1111 1124689999
Q ss_pred ecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-------cCCCCceEEEEecCCC-------C
Q 024550 89 EDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-------SSCGDERIIIFTTNHK-------E 154 (266)
Q Consensus 89 Deid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~~ivi~ttn~~-------~ 154 (266)
|||+.+.. ..+..|+..++... ......+.||+|||.+ .
T Consensus 103 DEi~~l~~---------------------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 103 DEIGDISP---------------------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp ESCTTCCH---------------------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred eccccCCH---------------------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 99998853 12344555555321 0112347888999875 3
Q ss_pred CCcccccCCCcce-eEEEcCCCC--HHHHHHHHHHhhCC-------CCCCcHHHHHHHhhcC--CCCHHHHHHHH
Q 024550 155 RLDPALLRPGRMD-MHINMSHCT--PSGFKMLASNYLGI-------AEHPLFVEIEKLIATA--KVTPADVAEQL 217 (266)
Q Consensus 155 ~ld~al~r~~Rf~-~~i~~~~p~--~~~~~~i~~~~~~~-------~~~~~~~~~~~l~~~~--~~s~~~i~~~l 217 (266)
.+.+.|.. ||. ..|.+|... .++...++.+++.. ....+..+....+... ..+.+++.+.+
T Consensus 156 ~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l 228 (304)
T 1ojl_A 156 RFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAI 228 (304)
T ss_dssp SSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHH
T ss_pred CcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 46677887 874 446666655 35555666665532 1223444443333333 34556666655
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=2.1e-13 Score=118.18 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=95.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc------CCcEEEEeCCc-ccChhhHHHHHHHcc------cCCeeeeecchhhHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL------KFDVYDLELSN-LLGNNDLRHILIATE------NKSILVVEDIDCCIEL 97 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~------~~~~~~i~~~~-~~~~~~l~~~~~~~~------~~~vl~iDeid~l~~~ 97 (266)
.+.+|||||||+|||++++++|+.+ +..++.+++.. -.+...++.++..+. ...|++|||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 4579999999999999999999863 45788888764 334445666665543 246999999998742
Q ss_pred hHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCCCCH
Q 024550 98 QDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSHCTP 177 (266)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~p~~ 177 (266)
...+.|+..|+. ++...++|.+||.+..+.+++.+ | .+.|+.|+.
T Consensus 97 --------------------------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~ 141 (305)
T 2gno_A 97 --------------------------QAANAFLKALEE----PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVP 141 (305)
T ss_dssp --------------------------HHHHHTHHHHHS----CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCC
T ss_pred --------------------------HHHHHHHHHHhC----CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCH
Confidence 234667777774 34568888888999999999999 8 799999999
Q ss_pred HHHHHHHHHhh
Q 024550 178 SGFKMLASNYL 188 (266)
Q Consensus 178 ~~~~~i~~~~~ 188 (266)
++...++....
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998888776
No 79
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.46 E-value=1.3e-13 Score=146.22 Aligned_cols=138 Identities=20% Similarity=0.327 Sum_probs=96.1
Q ss_pred CCceeEEecCCCCChHHHH-HHHHHHcCCcEEEEeCCcccChhhHHHHHHHc-----------------ccCCeeeeecc
Q 024550 30 WKRGYLLYGPPGTGKSSLI-AAMANYLKFDVYDLELSNLLGNNDLRHILIAT-----------------ENKSILVVEDI 91 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la-~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~-----------------~~~~vl~iDei 91 (266)
.++++||+||||||||++| +.++...+..++.++++..++...++..+... ..++|+||||+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccc
Confidence 3578999999999999999 55555557889999999988877777776542 12369999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC------CceEEEEecCCCC-----CCcccc
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG------DERIIIFTTNHKE-----RLDPAL 160 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~ivi~ttn~~~-----~ld~al 160 (266)
+.... ++.+ .......+.++++. .+++.... .++.+|||||+|. .++++|
T Consensus 1346 nmp~~--d~yg----------------~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1346 NLPKL--DKYG----------------SQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp TCSCC--CSSS----------------CCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred ccccc--cccC----------------chhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 85321 0000 01112222222211 12222111 2478999999994 799999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhhC
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYLG 189 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~ 189 (266)
+| || ..+.++.|+.+++..|+..++.
T Consensus 1407 lR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1407 TR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred hh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 99 99 6799999999999999887774
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.9e-14 Score=135.36 Aligned_cols=129 Identities=20% Similarity=0.245 Sum_probs=86.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe----CCcccCh---hhH------HHHHHHcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE----LSNLLGN---NDL------RHILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~----~~~~~~~---~~l------~~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
++||+||||||||++|+++|+.++..++... +..+... ... .........++|+||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~--- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD--- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH---
Confidence 7999999999999999999999987665532 2222110 000 00001122579999999998742
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhccc---------cCCCCceEEEEecCCCC-------------CCc
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW---------SSCGDERIIIFTTNHKE-------------RLD 157 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~ivi~ttn~~~-------------~ld 157 (266)
...+.|+..|+... ...+.++.||+|||++. .++
T Consensus 406 ------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~ 461 (595)
T 3f9v_A 406 ------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLP 461 (595)
T ss_dssp ------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSC
T ss_pred ------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCC
Confidence 23344555554221 11134678999999886 889
Q ss_pred ccccCCCcce-eEEEcCCCCHHHHHHHHHHhhCCC
Q 024550 158 PALLRPGRMD-MHINMSHCTPSGFKMLASNYLGIA 191 (266)
Q Consensus 158 ~al~r~~Rf~-~~i~~~~p~~~~~~~i~~~~~~~~ 191 (266)
++|++ ||+ ..+..+.|+.+ ...|.++.+...
T Consensus 462 ~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 462 PTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp SSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred HHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 99999 997 55666777777 888888777653
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=6.2e-14 Score=108.09 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=73.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRARAANPD 110 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~ 110 (266)
+.++||+||||||||++|++++...+ +++.++|..+.. ......+.. ..+++|||||+|.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~-a~~~~l~lDei~~l~~-------------- 89 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELLQK-AEGGVLYVGDIAQYSR-------------- 89 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHHHH-TTTSEEEEEECTTCCH--------------
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHHHh-CCCCeEEEeChHHCCH--------------
Confidence 45799999999999999999999888 899999887643 223444444 3478999999998843
Q ss_pred cccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC-CC----CcccccCCCcce-eEEEcCC
Q 024550 111 FLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK-ER----LDPALLRPGRMD-MHINMSH 174 (266)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~-~~----ld~al~r~~Rf~-~~i~~~~ 174 (266)
..+..++..++... ...+.+|+|||.+ .. +++.|.. |+. ..|++|.
T Consensus 90 -------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 90 -------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp -------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred -------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 12333455555431 2356788888753 33 3344555 543 4566664
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=5.2e-13 Score=122.81 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=81.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC--CcEEEEeCCcccChhhH-----------HHHHHHcc-----cCCeeeeecch
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK--FDVYDLELSNLLGNNDL-----------RHILIATE-----NKSILVVEDID 92 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~--~~~~~i~~~~~~~~~~l-----------~~~~~~~~-----~~~vl~iDeid 92 (266)
+.++||+||||||||++|+++|..++ .++..+.+... +...+ ...+.... .++|||||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~-t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC-CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC-CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHh
Confidence 45799999999999999999999884 35555555421 11111 11121111 35689999998
Q ss_pred hhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcc-------ccCCCCceEEEEecCCC-C--CCcccccC
Q 024550 93 CCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGL-------WSSCGDERIIIFTTNHK-E--RLDPALLR 162 (266)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~~ivi~ttn~~-~--~ld~al~r 162 (266)
.+. ..+.+.|+..|+.. ....+ ..++|+|||++ + .+.+++++
T Consensus 120 r~~---------------------------~~~q~~LL~~lee~~v~i~G~~~~~~-~~~iI~ATN~lpe~~~~~~aLld 171 (500)
T 3nbx_X 120 KAG---------------------------PAILNTLLTAINERQFRNGAHVEKIP-MRLLVAASNELPEADSSLEALYD 171 (500)
T ss_dssp GCC---------------------------HHHHHHHHHHHHSSEEECSSSEEECC-CCEEEEEESSCCCTTCTTHHHHT
T ss_pred hhc---------------------------HHHHHHHHHHHHHHhccCCCCcCCcc-hhhhhhccccCCCccccHHHHHH
Confidence 653 22445566666421 11112 23567777753 2 23459999
Q ss_pred CCcceeEEEcCCCCH-HHHHHHHHHhhC
Q 024550 163 PGRMDMHINMSHCTP-SGFKMLASNYLG 189 (266)
Q Consensus 163 ~~Rf~~~i~~~~p~~-~~~~~i~~~~~~ 189 (266)
||...|.++.|+. +++..|+.....
T Consensus 172 --RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 172 --RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp --TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred --HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 9999999999997 678888886653
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=3.4e-11 Score=107.73 Aligned_cols=163 Identities=10% Similarity=0.094 Sum_probs=100.0
Q ss_pred CceeEE--ecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcccChh----------------------h----H
Q 024550 31 KRGYLL--YGPPGTGKSSLIAAMANYL---------KFDVYDLELSNLLGNN----------------------D----L 73 (266)
Q Consensus 31 ~~~iLl--~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~~~~~----------------------~----l 73 (266)
+..++| +||||+|||++++.+++.+ +..++.+++....+.. . +
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457999 9999999999999999876 4567778764322111 1 1
Q ss_pred HHHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC--CceEEEEecC
Q 024550 74 RHILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG--DERIIIFTTN 151 (266)
Q Consensus 74 ~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~~ivi~ttn 151 (266)
...+.....+.+|+|||++.+.... ......+..++..+.... ..+ .++.+|++|+
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~~~---------------------~~~~~~l~~l~~~~~~~~-~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLSSP---------------------RIAAEDLYTLLRVHEEIP-SRDGVNRIGFLLVAS 187 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHSCT---------------------TSCHHHHHHHHTHHHHSC-CTTSCCBEEEEEEEE
T ss_pred HHHHHhcCCeEEEEEeCHHHHhhcc---------------------CcchHHHHHHHHHHHhcc-cCCCCceEEEEEEec
Confidence 1122222357899999999884200 011234444445444321 012 4678888887
Q ss_pred CCC---CCc---ccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCC---CCCcHHHHHHHhhcCC------CCHHHHHHH
Q 024550 152 HKE---RLD---PALLRPGRMDMHINMSHCTPSGFKMLASNYLGIA---EHPLFVEIEKLIATAK------VTPADVAEQ 216 (266)
Q Consensus 152 ~~~---~ld---~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~~~------~s~~~i~~~ 216 (266)
.++ .++ +.+.+ +|...+.++.++.++..+++...+... .......+..+....+ ..|..+..+
T Consensus 188 ~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l 265 (412)
T 1w5s_A 188 DVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVA 265 (412)
T ss_dssp ETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHH
T ss_pred cccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 654 334 56667 665569999999999999997665321 1112334455555555 677766655
Q ss_pred H
Q 024550 217 L 217 (266)
Q Consensus 217 l 217 (266)
+
T Consensus 266 ~ 266 (412)
T 1w5s_A 266 L 266 (412)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=5.8e-12 Score=100.44 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=48.2
Q ss_pred HhCCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCcccCh-------hhHHHHHHHcccCCeeeeecchh
Q 024550 25 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSNLLGN-------NDLRHILIATENKSILVVEDIDC 93 (266)
Q Consensus 25 ~~~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~~~~~-------~~l~~~~~~~~~~~vl~iDeid~ 93 (266)
.+..+.+.+++|+||||||||+++++++..+ |..++.+++..+... ......+....++.+|+|||++.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCC
Confidence 3445556789999999999999999999877 556666665443210 00112334445789999999984
Q ss_pred h
Q 024550 94 C 94 (266)
Q Consensus 94 l 94 (266)
.
T Consensus 112 ~ 112 (180)
T 3ec2_A 112 E 112 (180)
T ss_dssp S
T ss_pred C
Confidence 3
No 85
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.17 E-value=9.9e-11 Score=94.70 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=42.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhh
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
++|..+++|||||||||||+++.++|+.++..++.+.-+. . . -.+.......+++|||+|.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s--~--f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--S--H--FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--S--C--GGGGGGTTCSSEEEEEECHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--c--h--hhhcccCCCCEEEEECCCch
Confidence 5666678999999999999999999999976554321111 0 0 01122234569999999843
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.16 E-value=7e-11 Score=91.56 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=47.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCI 95 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~ 95 (266)
+...++|+||+|+|||+++++++..+ |...+.++...+... ....++.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccC
Confidence 45679999999999999999999988 667888888776543 113468999999999753
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=7.5e-11 Score=95.54 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=45.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhh
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
.+++|+||||||||+++++++..+ +.+++.+++..+.. ...+...+.......+|+|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 789999999999999999999988 67777777654321 1112233344445679999999764
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.07 E-value=3e-09 Score=92.82 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc-----cC-------------------------------------
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL-----LG------------------------------------- 69 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~-----~~------------------------------------- 69 (266)
+.++|+||+|+|||++++.+++..+...+.+++... .+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 479999999999999999999998777777776532 11
Q ss_pred ----------hhhHHHHHH---Hcc-cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhc
Q 024550 70 ----------NNDLRHILI---ATE-NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDG 135 (266)
Q Consensus 70 ----------~~~l~~~~~---~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 135 (266)
...+..++. ... .+.+|+|||++.+.. ......+..+-..++.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~-----------------------~~~~~~~~~l~~~~~~ 167 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK-----------------------LRGVNLLPALAYAYDN 167 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG-----------------------CTTCCCHHHHHHHHHH
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc-----------------------cCchhHHHHHHHHHHc
Confidence 011222222 222 378999999998742 0001111111111221
Q ss_pred cccCCCCceEEEEecCCCC---------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcC
Q 024550 136 LWSSCGDERIIIFTTNHKE---------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATA 206 (266)
Q Consensus 136 ~~~~~~~~~ivi~ttn~~~---------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 206 (266)
. .++.+|.|+.... .....+. ||+...+.++.++.++..+++...+...+...... ..+....
T Consensus 168 ~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~i~~~t 239 (357)
T 2fna_A 168 L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EVVYEKI 239 (357)
T ss_dssp C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HHHHHHH
T ss_pred C-----CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HHHHHHh
Confidence 1 2355555554321 1112233 36667899999999999999987764322222121 5566666
Q ss_pred CCCHHHHHHHH
Q 024550 207 KVTPADVAEQL 217 (266)
Q Consensus 207 ~~s~~~i~~~l 217 (266)
+..|..+..++
T Consensus 240 ~G~P~~l~~~~ 250 (357)
T 2fna_A 240 GGIPGWLTYFG 250 (357)
T ss_dssp CSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77777765544
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.07 E-value=3.7e-10 Score=120.17 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc-cCCeeeeecchhhHHHhHHHhhhhhcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATE-NKSILVVEDIDCCIELQDRLSRARAAN 108 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~ 108 (266)
...+.++.||+|||||++++++|+.+|.+++.++|+.-.+...+..+|..+. .++++++|||+.+....-.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs-------- 715 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLS-------- 715 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHH--------
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHH--------
Confidence 3467899999999999999999999999999999999988888988887765 4899999999987431100
Q ss_pred Cccccccccccccchhhhhhhhhhhh---------ccccCCCCceEEEEecCC----CCCCcccccCCCcceeEEEcCCC
Q 024550 109 PDFLIAGYEQQKQYHITLSGLLNFID---------GLWSSCGDERIIIFTTNH----KERLDPALLRPGRMDMHINMSHC 175 (266)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~~ivi~ttn~----~~~ld~al~r~~Rf~~~i~~~~p 175 (266)
.....+..+.+.+. +..-.......+++|.|+ ...||++|.+ || ..|.|..|
T Consensus 716 ------------~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~P 780 (2695)
T 4akg_A 716 ------------AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSP 780 (2695)
T ss_dssp ------------HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCC
T ss_pred ------------HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCC
Confidence 00001111112221 110111234567888883 4678999999 88 57999999
Q ss_pred CHHHHHHHHHHhh
Q 024550 176 TPSGFKMLASNYL 188 (266)
Q Consensus 176 ~~~~~~~i~~~~~ 188 (266)
+.+...+|+-...
T Consensus 781 d~~~i~ei~l~s~ 793 (2695)
T 4akg_A 781 QSGTIAEMILQIM 793 (2695)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 9999888854333
No 90
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.03 E-value=2.7e-10 Score=101.22 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=80.8
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhhHHHhHHHhhhh
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCCIELQDRLSRAR 105 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~ 105 (266)
++++++..++|+||||+||||++++++...+..++.+.... ......+....+..++++||++.+.....+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~--- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLP--- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---
Confidence 47888888999999999999999999999887765533221 12222334445678889999997753100000
Q ss_pred hcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccccCCCcceeEEEcCC
Q 024550 106 AANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHINMSH 174 (266)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~r~~Rf~~~i~~~~ 174 (266)
..........+.+.+++. +.++.+||+++.+ +++++|||++..+....
T Consensus 237 -------------~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 -------------SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -------------CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -------------ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 000001234556666653 5678889999999 79999999987666644
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.03 E-value=7.1e-10 Score=118.76 Aligned_cols=136 Identities=17% Similarity=0.323 Sum_probs=90.6
Q ss_pred CceeEEecCCCCChHHHHHHHHH-HcCCcEEEEeCCcccChhhHHHHHHHc-----c-------------cCCeeeeecc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN-YLKFDVYDLELSNLLGNNDLRHILIAT-----E-------------NKSILVVEDI 91 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~-~~~~~~~~i~~~~~~~~~~l~~~~~~~-----~-------------~~~vl~iDei 91 (266)
.+.+||+||||||||+++..+.. ..+.+++.++++..++...+...+... . +..|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 56799999999999987765444 446678899999988888887777531 0 1259999999
Q ss_pred hhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCC------CceEEEEecCCC-----CCCcccc
Q 024550 92 DCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCG------DERIIIFTTNHK-----ERLDPAL 160 (266)
Q Consensus 92 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~~ivi~ttn~~-----~~ld~al 160 (266)
+.... +..+ ....-..+.++++. .+++.... .++.+|+|+|+| ..++++|
T Consensus 1384 Nmp~~--D~yG----------------tQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1384 NLPST--DKYG----------------TQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp TCCCC--CTTS----------------CCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred CCCCc--cccc----------------cccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 95321 0000 00111222222221 12222211 356799999988 3589999
Q ss_pred cCCCcceeEEEcCCCCHHHHHHHHHHhh
Q 024550 161 LRPGRMDMHINMSHCTPSGFKMLASNYL 188 (266)
Q Consensus 161 ~r~~Rf~~~i~~~~p~~~~~~~i~~~~~ 188 (266)
+| ||.. +.++.|+.++...|+..++
T Consensus 1445 ~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1445 LR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp HT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred Hh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 99 9955 9999999999999976654
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.01 E-value=1.9e-10 Score=99.72 Aligned_cols=64 Identities=33% Similarity=0.495 Sum_probs=43.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC----CcEEEEeCCcccC-------hhhHHHHHHHcccCCeeeeecchhh
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK----FDVYDLELSNLLG-------NNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~----~~~~~i~~~~~~~-------~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
..+++||||||||||+++.++|..+. .+++.+++..+.. ...+...+.......+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 57899999999999999999998664 6777777654321 1111122233345679999999754
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=99.01 E-value=6.7e-10 Score=90.14 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=75.1
Q ss_pred eeEEecCCCCChHHHHHHHHHH--------cC-CcEEEEeCCcccC---------------------hhhHHHHHH-Hcc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY--------LK-FDVYDLELSNLLG---------------------NNDLRHILI-ATE 81 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~--------~~-~~~~~i~~~~~~~---------------------~~~l~~~~~-~~~ 81 (266)
.+|++|+||||||+++..++.. .| .+++..++..+.. ...+..++. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4789999999999998886543 34 6676676654421 012222211 123
Q ss_pred cCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCccccc
Q 024550 82 NKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALL 161 (266)
Q Consensus 82 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al~ 161 (266)
.++||+|||++.+.+.+.. ... ...++..+.. ....+.-+|.+|+++..|+.++.
T Consensus 87 ~~~vliIDEAq~l~~~~~~---------------------~~e-~~rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA---------------------GSK-IPENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT---------------------TCC-CCHHHHGGGG---TTTTTCEEEEEESCGGGBCHHHH
T ss_pred CceEEEEEChhhhccCccc---------------------cch-hHHHHHHHHh---cCcCCeEEEEECCCHHHHhHHHH
Confidence 4899999999988531100 000 0123333332 22345677888888999999999
Q ss_pred CCCcceeEEEcCCCCHH
Q 024550 162 RPGRMDMHINMSHCTPS 178 (266)
Q Consensus 162 r~~Rf~~~i~~~~p~~~ 178 (266)
+ |+...++++.|...
T Consensus 142 ~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 142 T--LVRKHYHIASNKMG 156 (199)
T ss_dssp T--TEEEEEEEEECSSC
T ss_pred H--HhheEEEEcCcccC
Confidence 9 99999999876544
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.98 E-value=7e-09 Score=92.00 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=83.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc--EEEEeCCcccChhhHHHHHH-----------------HcccCCeeeeecch
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD--VYDLELSNLLGNNDLRHILI-----------------ATENKSILVVEDID 92 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~--~~~i~~~~~~~~~~l~~~~~-----------------~~~~~~vl~iDeid 92 (266)
..++++|++||||+++++++....+.. |+.++|..+.....-..+|. ....+++||||||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~ 232 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVG 232 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChh
Confidence 459999999999999999999887543 99999998854322233331 12356899999999
Q ss_pred hhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-CCC------CceEEEEecCCC-------CCCcc
Q 024550 93 CCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-SCG------DERIIIFTTNHK-------ERLDP 158 (266)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~------~~~ivi~ttn~~-------~~ld~ 158 (266)
.+.. ..+..|+..++.-.- ..+ ..+-+|+|||.. ..+.+
T Consensus 233 ~l~~---------------------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~ 285 (368)
T 3dzd_A 233 ELDQ---------------------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE 285 (368)
T ss_dssp GSCH---------------------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred hCCH---------------------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH
Confidence 8843 244556666653211 111 135688888753 23444
Q ss_pred cccCCCcce-eEEEcCCCCH--HHHHHHHHHhhC
Q 024550 159 ALLRPGRMD-MHINMSHCTP--SGFKMLASNYLG 189 (266)
Q Consensus 159 al~r~~Rf~-~~i~~~~p~~--~~~~~i~~~~~~ 189 (266)
.|.. |+. ..|++|.... ++...++.+++.
T Consensus 286 dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 286 DLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 5555 554 3466776655 566677776663
No 95
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=4.3e-09 Score=99.26 Aligned_cols=26 Identities=62% Similarity=0.754 Sum_probs=23.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
...++|+||||||||+++++++..+.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45799999999999999999999874
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.93 E-value=6.5e-10 Score=96.02 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCc--EEEEeCCc----cc-Chh-hHHHHHHHcccCCeeeeecchhhHHHh
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--VYDLELSN----LL-GNN-DLRHILIATENKSILVVEDIDCCIELQ 98 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~--~~~i~~~~----~~-~~~-~l~~~~~~~~~~~vl~iDeid~l~~~~ 98 (266)
|+++++.++|+||||||||+++..+|...|.+ ++.+.... +. ... .+..+........+|+||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 55566668999999999999999999875544 44441111 11 111 122222323222299999999985422
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCCCCCcccc
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPAL 160 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~~~ld~al 160 (266)
..... .......+..++..|.+.... .++.+|+++|. ...++++
T Consensus 199 ~~~s~---------------~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 199 GGNTT---------------SGGISRGAFDLLSDIGAMAAS--RGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECCC-SSCSSSH
T ss_pred ccccc---------------cchHHHHHHHHHHHHHHHHhh--CCCEEEEEeCC-cccchhH
Confidence 11000 011133455666666554433 34678888884 4445443
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.92 E-value=9.3e-09 Score=91.81 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCcccChhhHHHHHH-----------------HcccCCeeeeec
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLLGNNDLRHILI-----------------ATENKSILVVED 90 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~~~~~l~~~~~-----------------~~~~~~vl~iDe 90 (266)
...+|++|++|||||+++++++.... .+|+.++|+.+...---..+|. ....+++|||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 34589999999999999999998774 7899999998743211122221 123468999999
Q ss_pred chhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccc-c------CCCCceEEEEecCCC-------CCC
Q 024550 91 IDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLW-S------SCGDERIIIFTTNHK-------ERL 156 (266)
Q Consensus 91 id~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~------~~~~~~ivi~ttn~~-------~~l 156 (266)
|+.+.. ..+..|+..++... . .....+.+|+|||.. ..+
T Consensus 240 i~~l~~---------------------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 240 IGELSL---------------------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp GGGCCH---------------------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred hhhCCH---------------------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 998843 24445556555311 0 001246788998863 334
Q ss_pred cccccCCCcce-eEEEcCCCCH--HHHHHHHHHhh
Q 024550 157 DPALLRPGRMD-MHINMSHCTP--SGFKMLASNYL 188 (266)
Q Consensus 157 d~al~r~~Rf~-~~i~~~~p~~--~~~~~i~~~~~ 188 (266)
.+.|.. |+. ..|++|.... ++...|+.+++
T Consensus 293 r~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l 325 (387)
T 1ny5_A 293 REDLYY--RLGVIEIEIPPLRERKEDIIPLANHFL 325 (387)
T ss_dssp CHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHH
T ss_pred cHHHHH--hhcCCeecCCcchhccccHHHHHHHHH
Confidence 455554 553 4455555433 55556666665
No 98
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.90 E-value=1.2e-09 Score=111.97 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=71.9
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc----------------------ChhhHHHHHHHc--
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL----------------------GNNDLRHILIAT-- 80 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~----------------------~~~~l~~~~~~~-- 80 (266)
+|..+.+|+|||||||||++|.+++.+. |.+-+.+++.... ++..+..++..+
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 3344459999999999999999999877 4555566655432 133444444333
Q ss_pred ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC
Q 024550 81 ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK 153 (266)
Q Consensus 81 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~ 153 (266)
..++++|+|+++.|++.+........ .+..-..+.++++|..|++.... .+++|| +||+.
T Consensus 1159 ~~~~~i~~d~~~al~~~~~~~g~~~~----------~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAEIEGEIGD----------SHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTC----------CCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred cCCeEEEeCchHhcCccccccccccc----------ccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 35899999999999875431100000 01123345688899999886554 446666 67754
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.87 E-value=4.9e-08 Score=84.89 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=91.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCccc------Ch-----------------------------------
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLL------GN----------------------------------- 70 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~------~~----------------------------------- 70 (266)
+.++|+||+|+|||++++.+++..+ .+.+++.... +.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5799999999999999999999875 5555543221 00
Q ss_pred -hhHHHHHHHc------ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCc
Q 024550 71 -NDLRHILIAT------ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDE 143 (266)
Q Consensus 71 -~~l~~~~~~~------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 143 (266)
..+..++... ..+.+|+|||++.+.... .......+..+...++.. .+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~--------------------~~~~~~~~~~L~~~~~~~-----~~ 164 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG--------------------SRGGKELLALFAYAYDSL-----PN 164 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT--------------------TTTTHHHHHHHHHHHHHC-----TT
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC--------------------ccchhhHHHHHHHHHHhc-----CC
Confidence 1122222111 138899999999874200 000011122222222221 23
Q ss_pred eEEEEecCCC---C------CCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhcCCCCHHHH
Q 024550 144 RIIIFTTNHK---E------RLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPL-FVEIEKLIATAKVTPADV 213 (266)
Q Consensus 144 ~ivi~ttn~~---~------~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~i 213 (266)
+.+|.|+... . .....+.. |+...+.++..+.++..+++...+...+... ...+..+....+..|..+
T Consensus 165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~--~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 165 LKIILTGSEVGLLHDFLKITDYESPLYG--RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp EEEEEEESSHHHHHHHHCTTCTTSTTTT--CCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHH
T ss_pred eEEEEECCcHHHHHHHHhhcCCCCcccc--CccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 4555554332 1 11223333 6667899999999999999988775544333 345566667777788776
Q ss_pred HHHH
Q 024550 214 AEQL 217 (266)
Q Consensus 214 ~~~l 217 (266)
..+.
T Consensus 243 ~~~~ 246 (350)
T 2qen_A 243 VVFG 246 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.82 E-value=2e-08 Score=107.93 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=97.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcc-cCCeeeeecchhhHHHhHHHhhhhhcCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATE-NKSILVVEDIDCCIELQDRLSRARAANP 109 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~~ 109 (266)
..|..+.||+|||||.+++.+|+.+|.+++.++|+.-.+...+..+|..+. .++..++|||+.+-...-..-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~------ 677 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVS------ 677 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHH------
Confidence 456789999999999999999999999999999999888888888887765 5899999999987431100000
Q ss_pred ccccccccccccchhhhhhhhhh-----hh-ccccCCCCceEEEEecCC----CCCCcccccCCCcceeEEEcCCCCHHH
Q 024550 110 DFLIAGYEQQKQYHITLSGLLNF-----ID-GLWSSCGDERIIIFTTNH----KERLDPALLRPGRMDMHINMSHCTPSG 179 (266)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~ll~~-----l~-~~~~~~~~~~ivi~ttn~----~~~ld~al~r~~Rf~~~i~~~~p~~~~ 179 (266)
.+...+...+... +. |..-......-++.|.|+ ...||++|.. || +.|.|..||.+.
T Consensus 678 ----------~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 678 ----------QQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp ----------HHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred ----------HHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 0000111111110 00 111111234667888884 4688999999 98 569999999999
Q ss_pred HHHHHHHhhCC
Q 024550 180 FKMLASNYLGI 190 (266)
Q Consensus 180 ~~~i~~~~~~~ 190 (266)
..+|+-.-.+.
T Consensus 745 i~ei~L~s~Gf 755 (3245)
T 3vkg_A 745 IAQVMLYSQGF 755 (3245)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHccc
Confidence 88886544333
No 101
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.73 E-value=9.6e-08 Score=80.46 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcccChhhHHHHHHHcccCCeeeeecchhh
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNLLGNNDLRHILIATENKSILVVEDIDCC 94 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~vl~iDeid~l 94 (266)
++.++++||||||||||+++.++|+.++. .-.++.+.. ...+.....+.+++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc------ccccccccccEEEEeccccch
Confidence 44568999999999999999999998654 223333211 112334455667777776543
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.51 E-value=3.6e-08 Score=89.09 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=67.5
Q ss_pred eeEEecCCCCChHHHHHHH-HHHcCCcEEEEeCCcccChhhHH------------HHHHHcccCCeeeeecchhhHHHhH
Q 024550 33 GYLLYGPPGTGKSSLIAAM-ANYLKFDVYDLELSNLLGNNDLR------------HILIATENKSILVVEDIDCCIELQD 99 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~al-a~~~~~~~~~i~~~~~~~~~~l~------------~~~~~~~~~~vl~iDeid~l~~~~~ 99 (266)
++||.|+||| ||++++++ ++.+....+..... .+...+. .-......++|+|+|||+.+..
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~--- 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE--- 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH---
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH---
Confidence 6999999999 99999999 77665444332111 0100010 0011123579999999997743
Q ss_pred HHhhhhhcCCccccccccccccchhhhhhhhhhhhcccc-----CCCCceEEEEecCCCC-----------CCcccccCC
Q 024550 100 RLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWS-----SCGDERIIIFTTNHKE-----------RLDPALLRP 163 (266)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~ivi~ttn~~~-----------~ld~al~r~ 163 (266)
..+..|+..|+.-.- ..+.++.||||+|+.. .|++++++
T Consensus 315 ------------------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD- 369 (506)
T 3f8t_A 315 ------------------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS- 369 (506)
T ss_dssp ------------------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT-
T ss_pred ------------------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh-
Confidence 233444444442100 1235688999999864 78899999
Q ss_pred CcceeE-EEcCCCCHHH
Q 024550 164 GRMDMH-INMSHCTPSG 179 (266)
Q Consensus 164 ~Rf~~~-i~~~~p~~~~ 179 (266)
||++. +.+..|+.+.
T Consensus 370 -RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 370 -HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp -TCSEEEETTC------
T ss_pred -heeeEEEecCCCChhH
Confidence 99764 4456666543
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.50 E-value=7.1e-07 Score=78.02 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=95.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CC-cEEEEeCCcccChhhHHHHHHHc------ccCCeeeeecchh-hHHHh
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KF-DVYDLELSNLLGNNDLRHILIAT------ENKSILVVEDIDC-CIELQ 98 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~-~~~~i~~~~~~~~~~l~~~~~~~------~~~~vl~iDeid~-l~~~~ 98 (266)
.++.+|||||+|+||++.++.+++.+ +. +...+.... ...+..++..+ ...-|++|||++. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 35689999999999999999998865 32 222222222 23445554433 2467999999986 52
Q ss_pred HHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCCC------CCCcccccCCCcceeEEEc
Q 024550 99 DRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNHK------ERLDPALLRPGRMDMHINM 172 (266)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~~------~~ld~al~r~~Rf~~~i~~ 172 (266)
....+.|+..++.- +...++|.+++.+ ..+.+++.+ |+ ..+.|
T Consensus 91 ------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~ 139 (343)
T 1jr3_D 91 ------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTC 139 (343)
T ss_dssp ------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEE
T ss_pred ------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEe
Confidence 22345566666542 2345555444432 356778888 77 56999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcHHH-HHHHhhcCCCCHHHHHHH
Q 024550 173 SHCTPSGFKMLASNYLGIAEHPLFVE-IEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 173 ~~p~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~i~~~ 216 (266)
..++..+....+...+...+..+..+ +..++...+.+..++.+.
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 99999999988888887776555443 334444445555555443
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.42 E-value=4.7e-07 Score=94.19 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC---------------------hhhHHHHHHH---
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG---------------------NNDLRHILIA--- 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~~--- 79 (266)
|++++++++||||||||||+||.+++.+. |.....+++..... .......+..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 38888899999999999999999998776 55666777664321 1122222222
Q ss_pred cccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEe
Q 024550 80 TENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT 149 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~t 149 (266)
...+++|+||+++.+.+.........+ .......+.++.+|..|.+.... .++++|+|
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~----------~~~~~~~R~lsqlL~~L~~~~~~--~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGD----------SHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTC----------CCTTHHHHHHHHHHHHHHHHHHT--TTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccc----------cccchHHHHHHHHHHHHHHHHHh--CCcEEEEE
Confidence 256899999999988753321100000 00011244567777777776654 33444443
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.35 E-value=1.7e-06 Score=68.66 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876444
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.12 E-value=2.5e-06 Score=67.09 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=29.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+..|+|+||||+||||+++.++..++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 3468999999999999999999999988877653
No 107
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=1.8e-06 Score=69.52 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+...++|.|||||||||+++.++..++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34456999999999999999999999998876543
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.09 E-value=1.9e-06 Score=68.25 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+..|+|+|||||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999887543
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.06 E-value=1.9e-06 Score=68.77 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=22.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i 62 (266)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999986666543 4444443
No 110
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.05 E-value=3.8e-06 Score=66.72 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.+.+..|+|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3445678999999999999999999999887665
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.04 E-value=4.8e-06 Score=64.79 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876655
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.02 E-value=7e-06 Score=70.11 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=28.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+..++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568999999999999999999988545566664
No 113
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=1.3e-05 Score=75.02 Aligned_cols=34 Identities=35% Similarity=0.386 Sum_probs=26.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
...+++.||||||||+++.+++..+ +.+++.+.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3468899999999999999998765 566665544
No 114
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.00 E-value=1.2e-05 Score=69.70 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNL 67 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~ 67 (266)
|+++...++|+||||+|||+++..++... +...++++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 56666679999999999999999999865 557778877653
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=1.9e-05 Score=69.32 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=47.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC------------------hhhHHHH---HH---H
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG------------------NNDLRHI---LI---A 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~------------------~~~l~~~---~~---~ 79 (266)
|+++...++|+||||+|||+|+..++..+ +..+++++...... ...+.++ +. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566669999999999999999998775 56677777654321 1111111 11 1
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24578999999988764
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.98 E-value=2.3e-05 Score=63.83 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=29.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
|++++..++|+||||+|||++++.++... +.+++.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 46666679999999999999999998654 445555543
No 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.96 E-value=5e-06 Score=66.05 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=27.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH-cCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY-LKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~-~~~~~~~i~ 63 (266)
+..++|+|+|||||||+++.++.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 446999999999999999999999 687766543
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.94 E-value=5.7e-06 Score=65.23 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..|+|+|+||+||||+++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998877654
No 119
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.93 E-value=4.9e-06 Score=65.37 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=27.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.++|.|||||||||+++.||..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 120
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.92 E-value=5.8e-06 Score=65.37 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|.|+||+||||+++.|+..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999998876544
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.91 E-value=6.2e-06 Score=64.24 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
..++|.|+|||||||+++.||..+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36999999999999999999999999887643
No 122
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.90 E-value=0.00016 Score=67.42 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHHHH
Q 024550 173 SHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 173 ~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~~ 216 (266)
...+.++..+++..+..............++...+..|-.|..+
T Consensus 284 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 327 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLI 327 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHH
Confidence 46888999999988876532222344556666666666665543
No 123
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.88 E-value=1e-05 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.724 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
..+.|+|||||||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876553
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.87 E-value=8.6e-06 Score=64.66 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+..+..+.|.||||+||||+++.++..++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4455668999999999999999999987766666654
No 125
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.84 E-value=5.9e-05 Score=68.54 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998877
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.84 E-value=1.6e-05 Score=66.50 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~ 67 (266)
.+..++|.||||+||||+++.++..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999865566665443
No 127
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.84 E-value=1.1e-05 Score=64.79 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999887655
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.83 E-value=1.1e-05 Score=67.53 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=28.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
.++|.|||||||||+++.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877654
No 129
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.83 E-value=9e-06 Score=63.16 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-|+|+||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887654
No 130
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.82 E-value=9.7e-06 Score=63.23 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999877653
No 131
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.82 E-value=1.2e-05 Score=64.06 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
+..|+|.|+|||||||+++.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 446899999999999999999999998766543
No 132
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.82 E-value=5e-05 Score=79.38 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh------------------------hhHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN------------------------NDLRHILIA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~------------------------~~l~~~~~~ 79 (266)
|++.+..++|+||||||||+++.+++.+. |.+.+.+++...... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57788889999999999999999988655 677788877765321 112223334
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
...+.+|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 45699999999999854
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.81 E-value=1.1e-05 Score=63.98 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 34689999999999999999999998876543
No 134
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=7.3e-05 Score=65.96 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccCh---------------------hhHHHHHHH---
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLGN---------------------NDLRHILIA--- 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~~---------------------~~l~~~~~~--- 79 (266)
|+++...++|+||||+|||+++..++... +.+++.++....... ..+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46666679999999999999999888765 567777776542211 112222222
Q ss_pred cccCCeeeeecchhhH
Q 024550 80 TENKSILVVEDIDCCI 95 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~ 95 (266)
.....+|+||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 1347899999999885
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.79 E-value=5.1e-05 Score=66.54 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=46.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC---------------------hhhHHHHHH---H
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG---------------------NNDLRHILI---A 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~---~ 79 (266)
|+++...++|+||||+|||+++..++... +...++++...... ...+..+.. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566669999999999999999988654 55667776553221 011111221 1
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
...+.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 23488999999998863
No 136
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.78 E-value=1.3e-05 Score=65.02 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=26.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877655
No 137
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.77 E-value=1.4e-05 Score=65.60 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..|+|.|||||||||+++.|+..++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45699999999999999999999998876654
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.76 E-value=1.7e-05 Score=63.78 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=27.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+.-|+|.||||+||||+++.|+..+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34699999999999999999999998766553
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.76 E-value=1.8e-05 Score=62.55 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=26.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..++|.|||||||||+++.++..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999998766543
No 140
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.75 E-value=1.4e-05 Score=64.74 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=26.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|+|.||||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998877655
No 141
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.75 E-value=1.5e-05 Score=63.48 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 44699999999999999999999998766544
No 142
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.75 E-value=1.5e-05 Score=61.82 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=26.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999887654
No 143
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.75 E-value=1.4e-05 Score=62.51 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=23.2
Q ss_pred CceeEEecCCCCChHHHHHHHHH-HcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN-YLKFD 58 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~-~~~~~ 58 (266)
+.-|+|.||||+||||+++.++. .++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 34689999999999999999998 45543
No 144
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.75 E-value=7.2e-05 Score=65.77 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=48.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC---------------------hhhHHHHHHH---
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG---------------------NNDLRHILIA--- 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~---------------------~~~l~~~~~~--- 79 (266)
|+++...++|+||||+|||+++..++... +.+++.++...... ...+...+..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46667779999999999999999988765 56777777643221 1112222222
Q ss_pred cccCCeeeeecchhhHH
Q 024550 80 TENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ~~~~~vl~iDeid~l~~ 96 (266)
.....+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 24578999999998863
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.75 E-value=1.9e-05 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34689999999999999999999998776654
No 146
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.75 E-value=2.4e-05 Score=63.77 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..|+|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4589999999999999999999999876654
No 147
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.74 E-value=0.00036 Score=70.21 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=79.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHH-------cCCcEEEEeCCcccCh---------------------------hhHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY-------LKFDVYDLELSNLLGN---------------------------NDLRHI 76 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~-------~~~~~~~i~~~~~~~~---------------------------~~l~~~ 76 (266)
.+-+.|+|+.|+|||+||+.++.. +...++.++.+..... ..+...
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 445889999999999999988765 2233445555442110 111111
Q ss_pred HHHc----ccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEecCC
Q 024550 77 LIAT----ENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFTTNH 152 (266)
Q Consensus 77 ~~~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~ttn~ 152 (266)
+... .++.+|+||+++... . +..+ +.+..||.||..
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~~-----------------------------~----~~~~-------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDPW-----------------------------V----LKAF-------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCHH-----------------------------H----HTTT-------CSSCEEEEEESS
T ss_pred HHHHHhccCCCEEEEEecCCCHH-----------------------------H----HHhh-------cCCCEEEEEcCC
Confidence 1111 237888999988431 0 1111 133456777765
Q ss_pred CCCCcccccCCCcceeEEEcCC-CCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcCCCCHHHHH
Q 024550 153 KERLDPALLRPGRMDMHINMSH-CTPSGFKMLASNYLGIAEHPLFVEIEKLIATAKVTPADVA 214 (266)
Q Consensus 153 ~~~ld~al~r~~Rf~~~i~~~~-p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~ 214 (266)
+.-.. ... .....+.++. ++.++..++|..+..............++...+.-|-.|.
T Consensus 267 ~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 325 (1249)
T 3sfz_A 267 KSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVS 325 (1249)
T ss_dssp TTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHH
T ss_pred HHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHH
Confidence 43221 111 2234577775 8889989999887755443334445556666665555544
No 148
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.73 E-value=1.6e-05 Score=64.82 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=27.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..|+|.|+|||||||+++.|+..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3588999999999999999999999877655
No 149
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.73 E-value=6.4e-05 Score=64.99 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
|+++..-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4666666999999999999999999875
No 150
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.73 E-value=1.6e-05 Score=62.64 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=22.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
..|+|.|+||+||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999998876
No 151
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.72 E-value=2.3e-05 Score=64.07 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=27.5
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
...++-|+|.||||+||+|.++.|++.+|.+.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 334556888999999999999999999987654
No 152
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=2.9e-05 Score=60.74 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=25.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
..++|.||||+||||+++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999988765543
No 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.72 E-value=9.3e-05 Score=62.56 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
|++...-++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55556669999999999999999988644
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.72 E-value=2.2e-05 Score=62.08 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.-|+|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999887
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.72 E-value=2.2e-05 Score=63.01 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.|+|.|+|||||||+++.++..+|.+++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4889999999999999999999988766543
No 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.70 E-value=2.2e-05 Score=65.27 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.+..|+|.||||+||||+++.|+..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 455699999999999999999999998876654
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.70 E-value=3.1e-05 Score=62.14 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=25.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
+..+.|.||+|+||||+++.++..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 446889999999999999999999976443
No 158
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.68 E-value=3.5e-05 Score=63.42 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=27.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
..|+|.|+|||||||+++.||..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3589999999999999999999999876654
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.68 E-value=8.8e-05 Score=59.90 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~ 66 (266)
|+++...++|+||||+|||+++..++...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5777777999999999999999999986677777777654
No 160
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.67 E-value=2.5e-05 Score=63.68 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=26.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
+..|+|.||||+||||+++.||..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999875543
No 161
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.65 E-value=3.4e-05 Score=62.56 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=25.0
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
++|.||||+||+|.++.|++.+|.+.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7888999999999999999999886554
No 162
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.64 E-value=0.00011 Score=63.33 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc-----CCcEEEEeCCcccC------------------hhhHHHH-H---HH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDVYDLELSNLLG------------------NNDLRHI-L---IA 79 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~-----~~~~~~i~~~~~~~------------------~~~l~~~-~---~~ 79 (266)
|+++. -++++||||+|||+|+-.++... +...++++...-.. +....++ + ..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46666 68999999999999977766544 56677787654321 1122222 2 11
Q ss_pred ---c--ccCCeeeeecchhhHH
Q 024550 80 ---T--ENKSILVVEDIDCCIE 96 (266)
Q Consensus 80 ---~--~~~~vl~iDeid~l~~ 96 (266)
. ..+.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 1 2578999999998863
No 163
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.64 E-value=5.1e-05 Score=59.65 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=28.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
+..+.|.|++|+||||+++.++..+ |.+++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3458899999999999999999988 88888776
No 164
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.64 E-value=0.00029 Score=57.70 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=26.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
..+++.|+||+||||++-.+|..+ |..++.++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 359999999999999988888766 6666655543
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.62 E-value=4e-05 Score=66.31 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=30.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
+..++|+||+|||||++++.+|..++..++.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34689999999999999999999999888887643
No 166
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.62 E-value=5e-05 Score=60.11 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=27.3
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
+.|.|+|||||||+++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88888765
No 167
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.61 E-value=4e-05 Score=62.13 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=26.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.|+|.||||+||||+++.|+..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998877655
No 168
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.57 E-value=5.1e-05 Score=62.06 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=25.7
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
|+|.||||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766554
No 169
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.57 E-value=3.6e-05 Score=61.78 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=26.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+.|.||+||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776654
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.56 E-value=0.00035 Score=55.97 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=27.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
..+++|+++|.||||+|-++|-.. |..+..+.+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 359999999999999999888765 6777777544
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.56 E-value=5.5e-05 Score=61.64 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
..+.|.||+||||||+++.++..+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999876654
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.55 E-value=5e-05 Score=63.47 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=29.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
...+.|.||+|+||||+++.+|..+|.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 456999999999999999999999998877643
No 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.55 E-value=3.2e-05 Score=61.11 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~ 56 (266)
-|+|.||||+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 174
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.55 E-value=5.3e-05 Score=60.48 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=25.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.|.|.|+|||||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.54 E-value=8.7e-05 Score=59.51 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=27.1
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
.++..+.|.||+|+||||+++.++..+ |...+.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 345568899999999999999999988 44433444
No 176
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.54 E-value=7.3e-05 Score=59.37 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.6
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
|.|.|++||||||+++.++..+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999998 888876644
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.54 E-value=0.00014 Score=59.70 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHH--c-------CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~--~-------~~~~~~i~~~~ 66 (266)
|+++...++|+||||+|||++++.++.. . +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5667777999999999999999999985 2 45677777654
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.53 E-value=6.2e-05 Score=62.42 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=26.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
+..+.|.||+|+||||+++.++..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999999887544
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.52 E-value=8.1e-05 Score=59.49 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=28.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-CCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-KFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-~~~~~~i~~ 64 (266)
+.-|.|.|+||+||||+++.++..+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3458899999999999999999998 577776654
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.50 E-value=9.5e-05 Score=61.98 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=27.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHH---cCCcEEEEeC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY---LKFDVYDLEL 64 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~---~~~~~~~i~~ 64 (266)
.-|+|+|+||+||||+++.++.. .|.+++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45889999999999999999998 6777775543
No 181
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.49 E-value=0.0034 Score=58.14 Aligned_cols=49 Identities=12% Similarity=-0.052 Sum_probs=30.7
Q ss_pred eEEEcCCCCHHHHHHHHHHhhCCCCC-Cc-HHHHHHHhhcCCCCHHHHHHH
Q 024550 168 MHINMSHCTPSGFKMLASNYLGIAEH-PL-FVEIEKLIATAKVTPADVAEQ 216 (266)
Q Consensus 168 ~~i~~~~p~~~~~~~i~~~~~~~~~~-~~-~~~~~~l~~~~~~s~~~i~~~ 216 (266)
..+.++..+.++-.++|..+...... .. ......++...+..|-.|.-+
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 56899999999999999988533321 11 122345555555666655543
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.48 E-value=7.3e-05 Score=60.07 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
.+.|.||+||||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 88877654
No 183
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.48 E-value=6.2e-05 Score=60.34 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+.|+|++||||||+++.++..+|.+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 3779999999999999999999898776644
No 184
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.47 E-value=9.5e-05 Score=61.06 Aligned_cols=32 Identities=34% Similarity=0.365 Sum_probs=27.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..+.|.||||+||||+++.++..++.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34588999999999999999999998776543
No 185
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.47 E-value=8.9e-05 Score=59.38 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=27.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+.|.|++|+||||+++.++..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998777544
No 186
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.46 E-value=0.0011 Score=61.48 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=34.0
Q ss_pred CceEEEEecCCCC--CCcccccCCCcceeEEEcCCCCHHHHHHHH
Q 024550 142 DERIIIFTTNHKE--RLDPALLRPGRMDMHINMSHCTPSGFKMLA 184 (266)
Q Consensus 142 ~~~ivi~ttn~~~--~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~ 184 (266)
.++-+|.+|.+|. .++..++. -|...|.|...+..+...++
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 4688888888886 78888887 88889999999998877776
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.46 E-value=0.00024 Score=62.01 Aligned_cols=41 Identities=17% Similarity=0.069 Sum_probs=32.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCcc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSNL 67 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~~ 67 (266)
|+++..-++|+||||+|||+++..+|... +...++++....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 56666669999999999999999999862 556777777653
No 188
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.46 E-value=0.00016 Score=59.28 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=23.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i 62 (266)
-++++||+|+||||++..++..+ |..++.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 37788999999999888877766 4455555
No 189
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.44 E-value=0.00015 Score=65.72 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccCCCCceEEEEe---------cC--
Q 024550 83 KSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSSCGDERIIIFT---------TN-- 151 (266)
Q Consensus 83 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ivi~t---------tn-- 151 (266)
+.|+||||+|.|. ....+.|+..|+.- +..++|++| ++
T Consensus 296 ~~VliIDEa~~l~---------------------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~ 344 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDI 344 (456)
T ss_dssp ECEEEEESGGGCB---------------------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSC
T ss_pred ceEEEEechhhcC---------------------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccc
Confidence 4799999999873 23556667766642 234444455 32
Q ss_pred -CCCCCcccccCCCcceeEEEcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHH-hhcC-CCCHHHHHHHH
Q 024550 152 -HKERLDPALLRPGRMDMHINMSHCTPSGFKMLASNYLGIAEHPLFVEIEKL-IATA-KVTPADVAEQL 217 (266)
Q Consensus 152 -~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~-~~s~~~i~~~l 217 (266)
.+..+++++++ ||.. +.|+.|+.++..++++......+..+..+...+ +... ..+++....++
T Consensus 345 ~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 345 TSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp EEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred cccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 26788999999 9976 699999999999999988765544444433222 2222 24555554443
No 190
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.42 E-value=0.00031 Score=61.73 Aligned_cols=64 Identities=27% Similarity=0.453 Sum_probs=40.2
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCC-ccc---------------ChhhHHHHHHH--cccCCee
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELS-NLL---------------GNNDLRHILIA--TENKSIL 86 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~-~~~---------------~~~~l~~~~~~--~~~~~vl 86 (266)
.+...+++.||+|+||||++++++..+ +..++.+.-. .+. ....+...+.. ..+|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 334458999999999999999998876 3344433211 110 01123333333 2579999
Q ss_pred eeecch
Q 024550 87 VVEDID 92 (266)
Q Consensus 87 ~iDeid 92 (266)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999996
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.42 E-value=0.0001 Score=58.18 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=22.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999998764
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=0.00028 Score=57.32 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
|+++..-+.|+||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666679999999999999999999854
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.40 E-value=0.0001 Score=59.22 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
...+.-++|.||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34456699999999999999999999884
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.39 E-value=5e-05 Score=61.14 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
+.-|+|.|+|||||||+++.|+..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3458899999999999999999987543
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=0.00035 Score=56.05 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
.+.-+.|.||+|+||||+++.++..+ +.+++..+...+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 34458899999999999999999876 666666654433
No 196
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.0001 Score=59.08 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
.-|+|.|+||+||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 458899999999999999999998763
No 197
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.00024 Score=73.48 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcccC------------------hhhHHHHHHHc-----
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLLG------------------NNDLRHILIAT----- 80 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~~------------------~~~l~~~~~~~----- 80 (266)
|++++..++|+||||+|||+|+..+|..+ +.++.+++...... ...+.+++..+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47778889999999999999999998765 45677777654321 11233333322
Q ss_pred -ccCCeeeeecchhhHH
Q 024550 81 -ENKSILVVEDIDCCIE 96 (266)
Q Consensus 81 -~~~~vl~iDeid~l~~ 96 (266)
..+.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 4689999999998863
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.38 E-value=9.4e-05 Score=59.00 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
..|.|.|++||||||+++.|+.. |.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 87776544
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.36 E-value=0.00017 Score=60.07 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=26.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
..+.|.||+|+||||+++.++..+|..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999887654
No 200
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.36 E-value=0.00012 Score=63.53 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=30.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~ 67 (266)
.-++|.||+|||||+|+..||+.++..++..+.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 358899999999999999999999988877765543
No 201
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.35 E-value=0.00045 Score=55.22 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=40.2
Q ss_pred ceeEEecCCCCChH-HHHHHHHHHc--CCcEEEEeCC---cccC--------------hhhHHHHHHHcccCCeeeeecc
Q 024550 32 RGYLLYGPPGTGKS-SLIAAMANYL--KFDVYDLELS---NLLG--------------NNDLRHILIATENKSILVVEDI 91 (266)
Q Consensus 32 ~~iLl~GppGtGKT-~la~ala~~~--~~~~~~i~~~---~~~~--------------~~~l~~~~~~~~~~~vl~iDei 91 (266)
.-.++|||.|+||| .|.+++.+.. +..++.+.+. .... .....+++.....-.+|+|||+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEa 100 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 100 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEch
Confidence 34788999999999 7888887755 5566666543 1110 0111122223344579999999
Q ss_pred hhh
Q 024550 92 DCC 94 (266)
Q Consensus 92 d~l 94 (266)
..+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 977
No 202
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.35 E-value=0.00015 Score=62.22 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=29.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
+.-++|.||+|+|||+|+..+|..++..++..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 44688999999999999999999998877766543
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.00019 Score=58.98 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=30.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|++++..++|+||||+|||+++..++... +.+.+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 57777779999999999999988877643 5566666654
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.34 E-value=0.00021 Score=57.65 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344588999999999999999999875
No 205
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.33 E-value=0.0004 Score=65.78 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=22.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
-.|++||||||||+++-.+...+ +..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 47899999999997555444433 5556555544
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.33 E-value=0.0001 Score=59.31 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=25.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc-CCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL-KFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~-~~~~~~i 62 (266)
+.-+.|.||+|+||||+++.++..+ +..++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3347899999999999999999987 5544443
No 207
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.31 E-value=0.0014 Score=60.09 Aligned_cols=41 Identities=5% Similarity=0.101 Sum_probs=32.6
Q ss_pred ceEEEEecCCCC--CCcccccCCCcceeEEEcCCCCHHHHHHHHH
Q 024550 143 ERIIIFTTNHKE--RLDPALLRPGRMDMHINMSHCTPSGFKMLAS 185 (266)
Q Consensus 143 ~~ivi~ttn~~~--~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~ 185 (266)
++-+|.+|.+|. .++..+.. -|...|.|...+..+...++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 577778887775 57777777 888889999999998887764
No 208
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.31 E-value=7.1e-05 Score=60.29 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.-|+|.|+|||||||+++.|+..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999999764
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00017 Score=57.07 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
.+.|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=9.2e-05 Score=64.76 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.+++|+||||+||||+++++|..++.+++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999887744
No 211
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.29 E-value=0.00022 Score=58.64 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+..+.|.|++|+||||+++.++..+|.+++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34588999999999999999999999876643
No 212
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.29 E-value=0.00018 Score=64.62 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.-|+|+|+||+||||+++.++..++..++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 348899999999999999999998765543
No 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.29 E-value=0.00023 Score=59.16 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc--------EEEEeCCccc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD--------VYDLELSNLL 68 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~--------~~~i~~~~~~ 68 (266)
+..|.|.|++||||||+++.|+..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3458899999999999999999999876 3356665554
No 214
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.28 E-value=0.00023 Score=57.72 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=26.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.-|.|.|++|+||||+++.++. +|.+++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4588999999999999999998 887766543
No 215
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.27 E-value=0.00015 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++.-+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344568899999999999999999876
No 216
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.26 E-value=0.00023 Score=57.59 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
..+.|.|++|||||++++.++..+|.+++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35889999999999999999999998776543
No 217
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.26 E-value=0.00042 Score=60.67 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 66 (266)
|+++..-+.|+||||+|||+|++.++... +...++++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56666669999999999999999999876 24556666544
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00029 Score=57.84 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHH----cCCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LKFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~----~~~~~~~i~~~ 65 (266)
|+++..-++|+|+||+|||+++..+|.. .+.+++.++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5777777999999999999999877643 25677777654
No 219
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.23 E-value=0.0011 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998854
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.22 E-value=0.00018 Score=58.06 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
++.-+.|.||+|+||||+++.|+..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3445889999999999999999988753
No 221
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.22 E-value=0.00059 Score=56.31 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=27.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~~ 65 (266)
.++++||+|+|||.++..++...+.+.+.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999988887766666544
No 222
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.21 E-value=0.00019 Score=62.48 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.-++|.||+|+|||+++..||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987665554
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00019 Score=60.92 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=24.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-|.|.|++||||||+++.++ .+|.+++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 48899999999999999999 578776554
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.20 E-value=0.0004 Score=56.06 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.3
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC----CcEEEEe
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK----FDVYDLE 63 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~----~~~~~i~ 63 (266)
...+..++|.|+||+||||+++.++..++ .+++.++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44455688999999999999999998774 4466555
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00029 Score=56.09 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=23.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
+-|+|+||+|+|||||++.|.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3489999999999999999988874433
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.00024 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344588999999999999999999863
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.20 E-value=0.00021 Score=57.39 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.++++|.||+|+|||+++..++...+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 45699999999999999999999876 555443
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.19 E-value=0.00025 Score=55.94 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..++|.|+||+||||+++.++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999999874
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.00017 Score=59.30 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMA 52 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala 52 (266)
|+++...+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56666779999999999999999988
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.18 E-value=0.00023 Score=60.65 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc-CCcEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL-KFDVY 60 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~-~~~~~ 60 (266)
.-|+|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458999999999999999999974 55444
No 231
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.16 E-value=0.00036 Score=54.01 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=24.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++...+.|.||.|+|||||++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44555568899999999999999999987
No 232
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.14 E-value=0.00025 Score=61.02 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
.-++|.||+|+|||+++..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 357889999999999999999999876665543
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.12 E-value=0.00031 Score=60.25 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+.-+.|.||+|+||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999876
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00026 Score=56.70 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999998763
No 235
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.10 E-value=0.00036 Score=59.87 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=28.4
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
+.++++..+.|+||+|+|||||++.|+..+...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3566667799999999999999999999885444
No 236
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.10 E-value=0.0015 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 237
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.08 E-value=0.00038 Score=56.01 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=26.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.|.|.||+|||||++++.+|..+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58889999999999999999999999874
No 238
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00043 Score=46.78 Aligned_cols=45 Identities=7% Similarity=-0.103 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhc-CCCCHHHHHHHH
Q 024550 173 SHCTPSGFKMLASNYLGIAEHPLFVEIEKLIAT-AKVTPADVAEQL 217 (266)
Q Consensus 173 ~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~i~~~l 217 (266)
|.|+.++|.+||+.++.........++..++.. .+||++||.+++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~ 46 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 46 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 689999999999999988654334456666665 469999999988
No 239
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.07 E-value=0.00034 Score=56.97 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+++.-+.|.||+|+||||+++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334458899999999999999999976
No 240
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.07 E-value=0.00037 Score=61.94 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
+.-++|.||+|+|||+++..+|..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999877665543
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.06 E-value=0.00035 Score=55.27 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=21.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.05 E-value=0.00096 Score=59.46 Aligned_cols=40 Identities=23% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---------CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 66 (266)
|+++..-+.|+||||+|||+|++.++... +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56666679999999999999999776432 34477777654
No 243
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.05 E-value=0.0017 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.05 E-value=0.00038 Score=55.97 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.-+.|.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999887
No 245
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.04 E-value=0.0017 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.0021 Score=54.85 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=27.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
+..+.|.||+|+||||++..+|..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4458899999999999999998765 44666665543
No 247
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.03 E-value=0.0015 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|+..+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 248
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.01 E-value=0.0005 Score=54.33 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=28.9
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEEeCCcc
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDLELSNL 67 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i~~~~~ 67 (266)
+|++|++|+|||++|+.++.. +.+.+++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 789999999999999999988 888888877554
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00038 Score=61.17 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++..+.|.||+|+||||+++.+|..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34458899999999999999999876
No 250
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.99 E-value=0.0022 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999864
No 251
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.99 E-value=0.00075 Score=51.50 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~ 53 (266)
.+++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 252
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.98 E-value=0.001 Score=60.01 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=62.7
Q ss_pred HHHHHcccCCeeeeecchhhHHHhHHHhhhhhcCCccccccccccccchhhhhhhhhhhhccccC------CCCceEEEE
Q 024550 75 HILIATENKSILVVEDIDCCIELQDRLSRARAANPDFLIAGYEQQKQYHITLSGLLNFIDGLWSS------CGDERIIIF 148 (266)
Q Consensus 75 ~~~~~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~ivi~ 148 (266)
..+..+...+++++||||.+....... ..+.....++..||..|++.... ....++||+
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~---------------~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~ 307 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYS---------------GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 307 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCS---------------SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCC---------------CCCchHHHHHHHHHHHhcccccccccceecCCcEEEEe
Confidence 444455578899999999996421100 00112233566788888863211 125688998
Q ss_pred ec----CCCCCCcccccCCCcceeEEEcCCCCHHHHHHHHH
Q 024550 149 TT----NHKERLDPALLRPGRMDMHINMSHCTPSGFKMLAS 185 (266)
Q Consensus 149 tt----n~~~~ld~al~r~~Rf~~~i~~~~p~~~~~~~i~~ 185 (266)
|. +.|..+.|.|+. ||...|.|+.++.++..+|+.
T Consensus 308 ~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 308 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 87 234445578999 999999999999999999884
No 253
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.98 E-value=0.0044 Score=46.96 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.97 E-value=0.00024 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.8
Q ss_pred CCCceeEEecCCCCChHHHHHHH
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAM 51 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~al 51 (266)
+.+.-+.|.||+|+||||+++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 34455889999999999999953
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.97 E-value=0.00058 Score=58.67 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=26.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4458899999999999999999876 4455555443
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=0.00059 Score=57.25 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=26.5
Q ss_pred HHHHhCCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 22 FYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 22 ~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+....+.+...++|.||+|+||||++++++..+
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3444445555568999999999999999999865
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.96 E-value=0.00051 Score=56.09 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.+.-+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34455688999999999999999999774
No 258
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.96 E-value=0.0025 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999754
No 259
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.96 E-value=0.0009 Score=57.65 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|+++..-++|.|+||+|||+++..+|... +.+++.+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777779999999999999999988654 4567777755
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.96 E-value=0.00053 Score=55.16 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.++..+.|.||+|+||||+++.++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44445588999999999999999999874
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00056 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++-+.|.||+|+|||||++.|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.94 E-value=0.00049 Score=58.52 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=30.5
Q ss_pred hCCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeC
Q 024550 26 VGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLEL 64 (266)
Q Consensus 26 ~~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~ 64 (266)
.|+++..-++|.||||+|||++++.++..+ |.+++.++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 467667779999999999999999998765 435655554
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.93 E-value=0.00041 Score=63.30 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..+.|.||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999876
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.93 E-value=0.00071 Score=57.68 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcCC-----cEEEE-eCCccc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLKF-----DVYDL-ELSNLL 68 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~~-----~~~~i-~~~~~~ 68 (266)
.+.-+.|.||+|+||||+++.++..++. +.+.+ +...+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 3445889999999999999999988853 23334 555544
No 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.93 E-value=0.0061 Score=60.44 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=26.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHH------cCCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY------LKFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~------~~~~~~~i~~~~ 66 (266)
.+-+.|+||.|+|||+||+.+++. +....+.++.+.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 456889999999999999998853 344455555443
No 266
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.93 E-value=0.003 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
....+++.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 267
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.00068 Score=60.98 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.1
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+.-+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4458899999999999999998766 5555555544
No 268
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.88 E-value=0.011 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999887654
No 269
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.87 E-value=0.00069 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347789999999999999999988643
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.86 E-value=0.0014 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++.-+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558899999999999999999876
No 271
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.85 E-value=0.0022 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.84 E-value=0.0015 Score=50.23 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999998753
No 273
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.84 E-value=0.0007 Score=55.65 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=25.6
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
+-|.||||+||||+++.|+..++.+.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 66899999999999999999998877644
No 274
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.84 E-value=0.00094 Score=60.16 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=28.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
+.-++++||+|+||||++..+|..+ |..+..+++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568999999999999999998766 55666665543
No 275
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.82 E-value=0.00093 Score=62.77 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=28.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
..|+|.|+||+||||+++.|+..+ |.+++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 348899999999999999999999 88888875
No 276
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.80 E-value=0.001 Score=58.77 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=26.3
Q ss_pred HHHhCCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 23 YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 23 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..+.+.++..++|.||+|+||||++++++..+
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344445555669999999999999999999865
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.77 E-value=0.0011 Score=57.19 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=28.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
++..+.++||+|+||||++..+|..+ +..+..+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34458899999999999999998766 55666665543
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.77 E-value=0.0017 Score=58.50 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=42.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc------------------------c--Ch-hhHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL------------------------L--GN-NDLRHILIAT 80 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~------------------------~--~~-~~l~~~~~~~ 80 (266)
+..++++|++|+||||++..+|..+ |..+..+++... . +. .-+...+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876 355555554321 0 00 1123444445
Q ss_pred ccCCeeeeecchhhH
Q 024550 81 ENKSILVVEDIDCCI 95 (266)
Q Consensus 81 ~~~~vl~iDeid~l~ 95 (266)
....+++||....+.
T Consensus 179 ~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK 193 (432)
T ss_dssp SSCSEEEEECCCSCS
T ss_pred hCCCEEEEcCCCCcc
Confidence 567889999877553
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.77 E-value=0.0069 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...+++.|++|+|||+|+..+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999998864
No 280
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.77 E-value=0.0034 Score=49.88 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 356999999999999863
No 281
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.76 E-value=0.0014 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
+.+++++|+|+|||.++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999987776654
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.76 E-value=0.00032 Score=56.37 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~ 56 (266)
-|.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999885
No 283
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.74 E-value=0.0065 Score=48.96 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=14.9
Q ss_pred CceeEEecCCCCChHHH
Q 024550 31 KRGYLLYGPPGTGKSSL 47 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~l 47 (266)
.+.+++++|+|+|||..
T Consensus 51 ~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 35699999999999976
No 284
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.74 E-value=0.00043 Score=56.63 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=16.1
Q ss_pred CCceeEEecCCCCChHHHHHHHH-HHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMA-NYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala-~~~ 55 (266)
++.-+.|.||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34458899999999999999999 765
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.002 Score=51.38 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=38.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc--------cC----------hhhHHHHHHHccc-CCeeeee
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL--------LG----------NNDLRHILIATEN-KSILVVE 89 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~--------~~----------~~~l~~~~~~~~~-~~vl~iD 89 (266)
.-.+++||+|+|||+.+..++..+ |..++.+.+..- .+ .....+++..... ..+|+||
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViID 88 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAID 88 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEE
Confidence 347789999999999888777765 555544431100 00 0111244544443 5799999
Q ss_pred cchhh
Q 024550 90 DIDCC 94 (266)
Q Consensus 90 eid~l 94 (266)
|+..+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99876
No 286
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.73 E-value=0.0024 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~ 53 (266)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 287
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0029 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 288
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.72 E-value=0.0017 Score=58.57 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=31.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~ 65 (266)
|++++.-++|+|+||+|||+++..+|... |.+++.++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 57666679999999999999999887654 5577777764
No 289
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.72 E-value=0.0011 Score=54.37 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=26.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYD 61 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~ 61 (266)
.|.+.|++|||||++++.||..+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47789999999999999999999998865
No 290
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.71 E-value=0.0011 Score=54.34 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC--CcEEEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK--FDVYDL 62 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~--~~~~~i 62 (266)
.-+.|.||||+||||+++.++..++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3477889999999999999999986 455443
No 291
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.71 E-value=0.0022 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 292
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.71 E-value=0.0018 Score=58.70 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~ 65 (266)
|++++.-++|.|+||+|||+++..+|... |.+++.++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56666679999999999999999888754 5577777754
No 293
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.70 E-value=0.0035 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred CceeEEecCCCCChHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~ 53 (266)
...+++.|++|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44699999999999999999864
No 294
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.0036 Score=53.37 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~~i~ 63 (266)
.+.+++.+|+|+|||..+-..+-..+...+.+.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~ 63 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILELGMKSLVVT 63 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEe
Confidence 357999999999999876655555555544443
No 295
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.70 E-value=0.0015 Score=61.51 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877766554
No 296
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.69 E-value=0.0034 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999865
No 297
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.69 E-value=0.0013 Score=51.46 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=23.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
..++||.|++|+|||+++.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 568999999999999999999874 4433
No 298
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.69 E-value=0.003 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 299
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.66 E-value=0.003 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
-.+++.|++|+|||++++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998654
No 300
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.62 E-value=0.00071 Score=57.63 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC---CcEEEEeCCccc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK---FDVYDLELSNLL 68 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~---~~~~~i~~~~~~ 68 (266)
-|.|.||+|+||||+++.++..++ ..+..++...+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478999999999999999999776 445667766665
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.0012 Score=52.65 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 302
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.0024 Score=55.57 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
|+.+..-++|.|+||+|||+++..+|... +.++..++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56666669999999999999999988764 6777777765
No 303
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.58 E-value=0.0033 Score=49.91 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHhCCCC-CceeEEecCCCCChHHHHHHHHH
Q 024550 23 YRRVGKAW-KRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 23 ~~~~~~~~-~~~iLl~GppGtGKT~la~ala~ 53 (266)
+..+.... +..+++.|++|+|||+|++.+..
T Consensus 16 l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34444333 23599999999999999999874
No 304
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.58 E-value=0.0057 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999853
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.58 E-value=0.0037 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
-.+++.|++|+|||+|+.++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999987543
No 306
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.53 E-value=0.0043 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999753
No 307
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.51 E-value=0.0012 Score=54.54 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+...+.|.||+|+|||||++.++....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444588999999999999999998663
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.50 E-value=0.0018 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|+||||+++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999998865
No 309
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0086 Score=46.66 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.6
Q ss_pred CceeEEecCCCCChHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~ 53 (266)
...+++.|++|+|||+|+..+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999984
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0018 Score=55.75 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=22.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.-+-|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344477999999999999999999773
No 311
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.49 E-value=0.0044 Score=42.67 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=36.7
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhcC-CCCHHHHHHHH
Q 024550 171 NMSHCTPSGFKMLASNYLGIAEHPLFVEIEKLIATA-KVTPADVAEQL 217 (266)
Q Consensus 171 ~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~s~~~i~~~l 217 (266)
+-..|+.++|.+||+.++.........++..++..+ +||++||.+++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~ 54 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 54 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 347899999999999999876543344556666654 79999999987
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.0058 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 313
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.48 E-value=0.0019 Score=55.42 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=21.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3458899999999999999999876
No 314
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.47 E-value=0.0013 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++...+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344458899999999999999999865
No 315
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.47 E-value=0.0028 Score=57.29 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 66 (266)
|+.++.-++|.|+||+|||+++..+|... |.++..+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56666679999999999999998887665 66777777653
No 316
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.46 E-value=0.005 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 317
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.45 E-value=0.01 Score=51.22 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCccc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNLL 68 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~~ 68 (266)
-+-|.||+||||||+++.++..++ ..+..++...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 477899999999999999998875 235555555443
No 318
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.0023 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..++|.|++|+|||+|+..+...-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 359999999999999999998643
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0038 Score=48.91 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
....+++.|++|+|||+++..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999998754
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.44 E-value=0.002 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=22.2
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
-.+|+||.|+|||+++++++..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4779999999999999999988763
No 321
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.44 E-value=0.0028 Score=61.37 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-.++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999877766554
No 322
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.44 E-value=0.0029 Score=58.37 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=22.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
..|+++|.||+||||+++.++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999884
No 323
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.43 E-value=0.0011 Score=54.26 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++..+.|.||+|+|||||++.++....
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344578999999999999999998663
No 324
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.43 E-value=0.0034 Score=61.57 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=19.8
Q ss_pred CceeEEecCCCCChHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~ 53 (266)
+..+.|.||.|+||||+.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34588999999999999998874
No 325
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.42 E-value=0.0088 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..+++.|++|+|||+|+..+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998643
No 326
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.41 E-value=0.0063 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 327
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.41 E-value=0.0052 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...++|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999754
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0046 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 329
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.40 E-value=0.007 Score=58.62 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+.|.||.|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 34889999999999999999864
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.40 E-value=0.014 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 49999999999999999887654
No 331
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.39 E-value=0.0044 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
..+++.|++|+|||++++.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999986
No 332
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.38 E-value=0.0026 Score=59.37 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=27.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC----CcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK----FDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~----~~~~~i~ 63 (266)
.|+|.|+||+||||+++.|+..++ .+++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 488999999999999999999986 6677776
No 333
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.38 E-value=0.0035 Score=53.69 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC-----CcEEEEeCCcc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK-----FDVYDLELSNL 67 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~-----~~~~~i~~~~~ 67 (266)
.-+-|.||+|+||||+++.++..++ ..+..++....
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3477999999999999999999765 23545554444
No 334
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.37 E-value=0.0036 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|+..+....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999987654
No 335
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.36 E-value=0.0067 Score=47.46 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..++|.|++|+|||+|+..+...-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998643
No 336
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.35 E-value=0.0023 Score=51.83 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEEeC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDLEL 64 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i~~ 64 (266)
.+-|+|..||||||+++.++. +|.+++..+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 477999999999999999998 9998887664
No 337
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.33 E-value=0.002 Score=53.33 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+++ ..+.|.||+|+|||||++.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 567899999999999999999866
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.32 E-value=0.0023 Score=50.02 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=24.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
..+.|.|++|+||||++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999999876 44444444
No 339
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.32 E-value=0.0017 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+...+.|.||+|+|||||++.++....
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344478999999999999999998764
No 340
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.32 E-value=0.0016 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++...+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344458899999999999999999865
No 341
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.31 E-value=0.0026 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
..++|.|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3599999999999999999984
No 342
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.30 E-value=0.003 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.-|.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999984
No 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.0015 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|||||||++.++...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3447799999999999999999865
No 344
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.29 E-value=0.022 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...++|.||+|+|||++++.++...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4459999999999999999988764
No 345
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.29 E-value=0.0012 Score=55.07 Aligned_cols=25 Identities=40% Similarity=0.731 Sum_probs=21.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...+.|.||+|+|||||++.++...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447899999999999999999866
No 346
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.28 E-value=0.0055 Score=54.96 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+..+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 4558888999999999999999876 4555555553
No 347
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.27 E-value=0.0016 Score=52.98 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=22.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..-+.|.||.|+|||||++.++....
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999998663
No 348
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.27 E-value=0.0022 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
+...+.|.||+|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999986
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.26 E-value=0.0019 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++..+.|.||+|+|||||++.++...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44458899999999999999999865
No 350
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.25 E-value=0.0039 Score=55.86 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
..++|.||+|+||||++++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3488999999999999999998874
No 351
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.25 E-value=0.002 Score=54.13 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+...+.|.||+|+|||||++.++....
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 344578999999999999999998763
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.24 E-value=0.0017 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+...+.|.||.|+|||||++.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999876
No 353
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.24 E-value=0.0017 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+...+.|.||+|+|||||++.++...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999876
No 354
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.24 E-value=0.0068 Score=59.61 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred ceeEEecCCCCChHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMA 52 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala 52 (266)
..++|.||.|+||||+++.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999999984
No 355
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.24 E-value=0.0019 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.0
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445889999999999999999975
No 356
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.24 E-value=0.002 Score=54.30 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+...+.|.||+|+|||||++.++....
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999998763
No 357
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.23 E-value=0.0022 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
+..-+.|.||+|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445889999999999999999985
No 358
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.23 E-value=0.0013 Score=54.96 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.-|.|.|++|+||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3478899999999999999999983
No 359
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.22 E-value=0.0035 Score=57.43 Aligned_cols=40 Identities=15% Similarity=-0.018 Sum_probs=32.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
|+++..-++|.|+||+|||+++..+|... |.++..++...
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56666679999999999999999888765 45777777653
No 360
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.21 E-value=0.0014 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|+|||||++.++...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3448899999999999999999865
No 361
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.19 E-value=0.0019 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..-+.|.||+|+|||||++.++....
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344578999999999999999998763
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.19 E-value=0.0019 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...-+.|.||+|||||||++.++...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33447799999999999999999865
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0019 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|||||||++.++...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3447799999999999999999865
No 364
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.18 E-value=0.0031 Score=57.78 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=26.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
+..|.|+|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4468899999999999999999766 555655555
No 365
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.18 E-value=0.0022 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+...+.|.||.|+|||||++.++...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999865
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.18 E-value=0.0015 Score=57.34 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 28 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 28 ~~~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+.++..++|.||+|+||||++++++....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44556799999999999999999998763
No 367
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0041 Score=60.30 Aligned_cols=33 Identities=36% Similarity=0.404 Sum_probs=22.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~ 65 (266)
-+++.||||||||+++..+...+ +..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999998776655433 4455555443
No 368
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.17 E-value=0.015 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.6
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
+.+++.+|+|+|||..+-..+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 5799999999999987654443
No 369
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.17 E-value=0.0023 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++..+.|.||.|+|||||++.++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44458899999999999999999865
No 370
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.17 E-value=0.0036 Score=56.32 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc----CCcEEEEeCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL----KFDVYDLELSN 66 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 66 (266)
++.++++|++|+||||++..+|..+ |..+..+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4568889999999999999888665 66677776664
No 371
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.16 E-value=0.002 Score=53.61 Aligned_cols=27 Identities=41% Similarity=0.501 Sum_probs=22.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
++..+.|.||+|+|||||++.++....
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344588999999999999999998764
No 372
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.16 E-value=0.024 Score=45.77 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++.+|.|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 457999999999999753
No 373
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.16 E-value=0.0082 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~ 53 (266)
.++|.|++|+|||+|+..+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999853
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.15 E-value=0.0018 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|||||||++.++...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3347799999999999999999865
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.15 E-value=0.0021 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|||||||++.+|...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3447799999999999999999865
No 376
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.14 E-value=0.0031 Score=51.15 Aligned_cols=31 Identities=32% Similarity=0.301 Sum_probs=24.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
-|.|.||+|+||||+++.++..+ |.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 47788999999999999999887 45555443
No 377
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.14 E-value=0.0021 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+-|.||+|||||||++.++...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3447799999999999999999866
No 378
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.14 E-value=0.024 Score=45.99 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++.+|+|+|||...
T Consensus 62 ~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEeCCCCcHHHHH
Confidence 356999999999999853
No 379
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.14 E-value=0.0031 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 380
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.13 E-value=0.0029 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 381
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.13 E-value=0.0065 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999853
No 382
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.13 E-value=0.0017 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..|+++|.||+||||+++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34589999999999999999999874
No 383
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.10 E-value=0.003 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 384
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.09 E-value=0.034 Score=45.43 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=15.2
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++.+|.|+|||...
T Consensus 66 g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp TCCEEEEECTTSCHHHHH
T ss_pred CCCEEEECCCcCHHHHHH
Confidence 357999999999999753
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.09 E-value=0.0042 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-|.|.||+|+||||+++.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999887
No 386
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.08 E-value=0.0023 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
++..+.|.||+|+|||||++.++...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999865
No 387
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.08 E-value=0.0023 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=21.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...+.|.||.|+|||||++.++...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3447899999999999999999866
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.08 E-value=0.0023 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=22.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
+..-+-|.||+|+|||||++.++...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34457899999999999999999865
No 389
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.07 E-value=0.0021 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+|||||||++.++...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3447899999999999999999865
No 390
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.07 E-value=0.0043 Score=52.99 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCcc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNL 67 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~ 67 (266)
+..+.+.|++|+||||++..+|..+ +..+..+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3457889999999999999999776 666666665533
No 391
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.07 E-value=0.0065 Score=47.14 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 392
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.06 E-value=0.02 Score=45.28 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.5
Q ss_pred CceeEEecCCCCChHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIA 49 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ 49 (266)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3579999999999996443
No 393
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.06 E-value=0.0027 Score=58.34 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.+++|.||+|+||||++++++..+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455799999999999999999998773
No 394
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.06 E-value=0.013 Score=56.48 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=18.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999977666543
No 395
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.05 E-value=0.0044 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...++|.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 396
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.04 E-value=0.013 Score=59.90 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..+.|+||+|+||||+++.+...+.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 34478999999999999999998773
No 397
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.03 E-value=0.0035 Score=54.95 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4458899999999999999999987654
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.03 E-value=0.0032 Score=57.80 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=23.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
..|+|.|.+||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999999984
No 399
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.02 E-value=0.0038 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0076 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|.|++|+|||+|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 49999999999999999998755
No 401
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.01 E-value=0.0062 Score=49.33 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=23.0
Q ss_pred eEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 34 YLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
.+++||.|+|||+.+-.++..+ |..++.+.+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5588999999999877776655 556665543
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.00 E-value=0.0017 Score=56.75 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...-+.|.||+|||||||++.+|...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34457899999999999999999865
No 403
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.00 E-value=0.004 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 404
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.98 E-value=0.01 Score=50.53 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=26.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
+..+.++|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3457788999999999999999766 4555555543
No 405
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.011 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+.++...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45999999999999999999863
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.97 E-value=0.0026 Score=56.40 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+.|.||+||||||+++.++...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3448899999999999999999754
No 407
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.96 E-value=0.013 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4999999999999999988753
No 408
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.96 E-value=0.0039 Score=58.55 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=20.3
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+.++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999999888776554
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.95 E-value=0.0062 Score=49.49 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
.-|.|.|++|+||||+++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 34788899999999999999999986433
No 410
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.94 E-value=0.0016 Score=56.51 Aligned_cols=64 Identities=14% Similarity=0.322 Sum_probs=40.1
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHcC--CcEEEEeCCcc------------c--ChhhHHHHHHH--cccCCeeeeecc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYLK--FDVYDLELSNL------------L--GNNDLRHILIA--TENKSILVVEDI 91 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~~--~~~~~i~~~~~------------~--~~~~l~~~~~~--~~~~~vl~iDei 91 (266)
++..++|.||+|+||||++++++.... ...+.+..... . +....+..+.. ..+|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 355799999999999999999998773 22333332110 0 11222223322 346889999997
Q ss_pred hh
Q 024550 92 DC 93 (266)
Q Consensus 92 d~ 93 (266)
..
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 63
No 411
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.93 E-value=0.0038 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+.|.|++|+|||+|++.++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999863
No 412
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.92 E-value=0.0025 Score=59.17 Aligned_cols=26 Identities=35% Similarity=0.407 Sum_probs=23.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
+..+.|.|++|+||||++++|+..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44588999999999999999999885
No 413
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.92 E-value=0.017 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.6
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4999999999999999998753
No 414
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.92 E-value=0.0093 Score=53.73 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=27.5
Q ss_pred HHHHhCCCCCce--eEEecCCCCChHHHHHHHHHHcCCc
Q 024550 22 FYRRVGKAWKRG--YLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 22 ~~~~~~~~~~~~--iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
.+... ++..+| +.|.||+|||||||++.++......
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34444 444444 8899999999999999999988544
No 415
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.90 E-value=0.0077 Score=52.31 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=21.9
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...-+.|.||||+||||+++.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34448899999999999999999765
No 416
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.90 E-value=0.0038 Score=57.54 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLEL 64 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~ 64 (266)
++++...++|.||+|+|||+|++.++... |.+.+.+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 56666679999999999999999998755 344444443
No 417
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.90 E-value=0.012 Score=48.01 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.1
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++++|+|+|||...
T Consensus 67 ~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 356999999999999753
No 418
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.027 Score=46.79 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.2
Q ss_pred ceeEEecCCCCChHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIA 49 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ 49 (266)
+.+++.+|.|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 569999999999997543
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.89 E-value=0.0033 Score=49.15 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~ 53 (266)
.+.|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 420
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.89 E-value=0.0034 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..+.|.||.|+|||||++.++...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999999865
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.0022 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHcC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.+.|.||+|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999998763
No 422
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.052 Score=44.43 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=34.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCCccc--Ch---------------hhHHHHHHHcccCCeeeeecch
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELSNLL--GN---------------NDLRHILIATENKSILVVEDID 92 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~~~~--~~---------------~~l~~~~~~~~~~~vl~iDeid 92 (266)
-.++|||.|+|||+.+-..+... |..++.+.+..-. +. ....+++.......+|+|||+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDEaQ 100 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 100 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEESSGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEchh
Confidence 37778999999997555444433 4444444422110 00 0011223333456799999998
Q ss_pred hh
Q 024550 93 CC 94 (266)
Q Consensus 93 ~l 94 (266)
.+
T Consensus 101 F~ 102 (234)
T 2orv_A 101 FF 102 (234)
T ss_dssp GC
T ss_pred hh
Confidence 76
No 423
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.0038 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=21.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...+.|.||+|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999865
No 424
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.83 E-value=0.019 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.0
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|++.+.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 49999999999999999877643
No 425
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.81 E-value=0.041 Score=45.27 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.2
Q ss_pred CceeEEecCCCCChHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la 48 (266)
.+.+++.+|.|+|||...
T Consensus 80 ~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCCchhHh
Confidence 357999999999999753
No 426
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.0049 Score=55.87 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHHc
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+....-+.|.||+|+|||||++.++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34455569999999999999999999865
No 427
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.79 E-value=0.0055 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 428
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.77 E-value=0.0075 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...+++.|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999753
No 429
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.77 E-value=0.0054 Score=46.62 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.77 E-value=0.0025 Score=55.77 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCceeEEecCCCCChHHHHHHHHHHc
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...-+.|.||+|||||||++.+|...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33447899999999999999999865
No 431
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.77 E-value=0.0045 Score=57.05 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCCCCceeEEecCCCCChHHHHHHH--HHHc--CCcEEEEeCC
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAM--ANYL--KFDVYDLELS 65 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~al--a~~~--~~~~~~i~~~ 65 (266)
++++...++|.||+|+|||||++.+ +... +...+.++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3556667999999999999999994 4433 3344555543
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.0091 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.1
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998743
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.76 E-value=0.021 Score=49.73 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.-+.|.|+||+|||||..++...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 348899999999999999999754
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.76 E-value=0.0058 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.76 E-value=0.0099 Score=51.86 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.0
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
.-+.|.||+|+|||||++.++.......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 3488999999999999999999886543
No 436
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.75 E-value=0.004 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.5
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..-+-|.||+|+|||||++.++...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3347799999999999999999865
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.75 E-value=0.0058 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.7
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..+++.|++|+|||+|+..+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 459999999999999999987643
No 438
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.0061 Score=54.60 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCCCCce--eEEecCCCCChHHHHHHHHHH
Q 024550 27 GKAWKRG--YLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 27 ~~~~~~~--iLl~GppGtGKT~la~ala~~ 54 (266)
.+..+.. +.|.||+|+|||||+++|+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3444444 789999999999999999875
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.72 E-value=0.0065 Score=46.23 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-.+|+||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998766
No 440
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.0056 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+.|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 441
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.72 E-value=0.0075 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...+++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999753
No 442
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.70 E-value=0.0068 Score=49.94 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
.-|.|.|++|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999877
No 443
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.67 E-value=0.0064 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998753
No 444
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.67 E-value=0.012 Score=51.48 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=25.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEe
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLE 63 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~ 63 (266)
...+.|.|+||+||||++..++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3458899999999999999998876 44444443
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.62 E-value=0.0083 Score=48.98 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKF 57 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~ 57 (266)
-|.|.|++|+||||+++.++..++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999999999987654
No 446
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.62 E-value=0.0066 Score=46.95 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+.|.|+||+|||+|+..++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 447
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.62 E-value=0.015 Score=51.39 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=27.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc---CCcEEEEeCC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL---KFDVYDLELS 65 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~---~~~~~~i~~~ 65 (266)
..++++.||+|+|||++++.++..+ +..++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4569999999999999999888754 5666666643
No 448
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.61 E-value=0.044 Score=47.53 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.1
Q ss_pred CceeEEecCCCCChHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIA 49 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ 49 (266)
++.+++.+|.|+|||..+-
T Consensus 44 ~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999998544
No 449
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.60 E-value=0.0042 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=22.0
Q ss_pred CCCCCceeEEecCCCCChHHHHHHHHHH
Q 024550 27 GKAWKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 27 ~~~~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
.+.....+.|.|++|+|||||++.++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444445899999999999999988753
No 450
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.60 E-value=0.0068 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.2
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999853
No 451
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.59 E-value=0.059 Score=45.73 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.0
Q ss_pred CceeEEecCCCCChHHH
Q 024550 31 KRGYLLYGPPGTGKSSL 47 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~l 47 (266)
++.+++++|.|||||..
T Consensus 131 ~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999975
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.58 E-value=0.0035 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...+.|.||+|+|||||++.++..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3447899999999999999999866
No 453
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.58 E-value=0.0082 Score=48.97 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=23.1
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCcEEEE
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFDVYDL 62 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~~~~i 62 (266)
-+.|.||.|+||||+++.++.. +..++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 3778899999999999999987 4444433
No 454
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.57 E-value=0.007 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 455
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.56 E-value=0.01 Score=51.00 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.4
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
..+++|.|++|+|||+++.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 468999999999999999999875 4443
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.54 E-value=0.0072 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
-|.|.|++|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999887
No 457
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.51 E-value=0.0096 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
.-.+++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999999875
No 458
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.49 E-value=0.039 Score=44.19 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.8
Q ss_pred ceeEEecCCCCChHHHH
Q 024550 32 RGYLLYGPPGTGKSSLI 48 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la 48 (266)
+.+++.+|.|+|||...
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56999999999999853
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.49 E-value=0.0076 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.6
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcC
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
...+.|.|++|+||||++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999998763
No 460
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.48 E-value=0.0078 Score=46.63 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999754
No 461
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.48 E-value=0.0087 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...+++.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 462
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.0075 Score=46.32 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred ceeEEecCCCCChHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~ 53 (266)
..+++.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999864
No 463
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.43 E-value=0.012 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.8
Q ss_pred eeEEecCCCCChHHHHHH-HHHH
Q 024550 33 GYLLYGPPGTGKSSLIAA-MANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~a-la~~ 54 (266)
.+++.|++|+|||+|+.. +...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 599999999999999998 4443
No 464
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.41 E-value=0.0071 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999998864
No 465
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.39 E-value=0.0094 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.++|.|++|+|||+|+..+...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998643
No 466
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.38 E-value=0.014 Score=54.04 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=25.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC---CcEEEEe
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK---FDVYDLE 63 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~---~~~~~i~ 63 (266)
..++|+|++|+||||+++.++..++ .++..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 3488999999999999999999874 3455554
No 467
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0097 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.36 E-value=0.0096 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.1
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 469
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.34 E-value=0.0097 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~ 53 (266)
....+++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999998763
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.33 E-value=0.01 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999765
No 471
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.33 E-value=0.011 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.9
Q ss_pred CceeEEecCCCCChHHHHHHHHHHc
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~ 55 (266)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999875
No 472
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.32 E-value=0.01 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999988764
No 473
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.32 E-value=0.0091 Score=51.19 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred CceeEEecCCCCChHHHHHHHHHHcCCcEE
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANYLKFDVY 60 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~~~~~~~ 60 (266)
..|+||.|++|+|||++|-.+.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 46799999999999999988866 344443
No 474
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.32 E-value=0.01 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999887764
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.31 E-value=0.01 Score=47.57 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=22.8
Q ss_pred eeEEecCCCCChHHHHHHHHHHcCCc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYLKFD 58 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~~~~ 58 (266)
-.+|+||.|+|||+++.++...++.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 47899999999999999999888653
No 476
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.29 E-value=0.019 Score=47.38 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=25.7
Q ss_pred eeEEecCCCCChHHHHHHHHHHc--CCcEEEEeCC
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL--KFDVYDLELS 65 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~--~~~~~~i~~~ 65 (266)
.+++.|.+|+||||++..++..+ |..+..++..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 37788999999999999999765 5555555543
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.28 E-value=0.0095 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..+.|.|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 478
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.27 E-value=0.0096 Score=49.21 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.3
Q ss_pred eEEecCCCCChHHHHHHHHHHcCCcE
Q 024550 34 YLLYGPPGTGKSSLIAAMANYLKFDV 59 (266)
Q Consensus 34 iLl~GppGtGKT~la~ala~~~~~~~ 59 (266)
+.|+|++|||||++++.+...+|.++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67899999999999999999888664
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.01 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999764
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.27 E-value=0.013 Score=45.06 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
.-.+++.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998864
No 481
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.27 E-value=0.051 Score=47.63 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.6
Q ss_pred CceeEEecCCCCChHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIA 49 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ 49 (266)
.+.+++.+|.|+|||..+-
T Consensus 77 ~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp TCCEEECCCSCSSSHHHHH
T ss_pred CCCEEEECCCCCcccHHHH
Confidence 3569999999999998643
No 482
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.25 E-value=0.01 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998764
No 483
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.25 E-value=0.011 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..++|.|++|+|||+|+..+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 459999999999999999998643
No 484
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.23 E-value=0.11 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.4
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+.|.|.||+|||+|+..+...
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998764
No 485
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.23 E-value=0.045 Score=48.05 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.0
Q ss_pred CceeEEecCCCCChHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAA 50 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~a 50 (266)
.+.+++.+|.|+|||...-.
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHH
Confidence 35699999999999975543
No 486
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.22 E-value=0.011 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999999864
No 487
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.21 E-value=0.012 Score=51.57 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.6
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3488999999999999999997654
No 488
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.20 E-value=0.0082 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.5
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
-.+++.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 489
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.19 E-value=0.011 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred ceeEEecCCCCChHHHHHHHHHH
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~ 54 (266)
..++|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999763
No 490
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.19 E-value=0.012 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred eeEEecCCCCChHHHHHHHHHHc
Q 024550 33 GYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~~ 55 (266)
.+++.|++|+|||+|+..+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998643
No 491
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.16 E-value=0.02 Score=38.84 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHhhCCCCCCcHHHHHHHhhcC-CCCHHHHHHHHHc-------CCCHHHHHHHHHHHHHhhhhh
Q 024550 176 TPSGFKMLASNYLGIAEHPLFVEIEKLIATA-KVTPADVAEQLMR-------NEAPEFALSGLIEFLESKKRA 240 (266)
Q Consensus 176 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~s~~~i~~~l~~-------~~~~~~~~~~~~~~~~~~~~~ 240 (266)
+.++|.+||+.++.........++..++..+ +||++||.+++.. ........+++..+++..+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999876544445566677654 7999999998842 122334455666666655443
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.15 E-value=0.011 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.+++.|++|+|||+|+..+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 493
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.14 E-value=0.013 Score=45.52 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.4
Q ss_pred CCceeEEecCCCCChHHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~~ 54 (266)
....+++.|++|+|||+|+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999998753
No 494
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.12 E-value=0.013 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.7
Q ss_pred CceeEEecCCCCChHHHHHHHHHH
Q 024550 31 KRGYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 31 ~~~iLl~GppGtGKT~la~ala~~ 54 (266)
...++|.|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999853
No 495
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.08 E-value=0.021 Score=45.76 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCceeEEecCCCCChHHHHHHHHHHcCCc-EEEEeCC
Q 024550 29 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD-VYDLELS 65 (266)
Q Consensus 29 ~~~~~iLl~GppGtGKT~la~ala~~~~~~-~~~i~~~ 65 (266)
.|..-|+|+|.||+||++++..+.+.+|.. +..++++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~ms 46 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS 46 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEcc
Confidence 355679999999999999999999877642 3334443
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.012 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|++|+|||+|+..+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 497
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.01 E-value=0.0095 Score=50.82 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=21.4
Q ss_pred ceeEEecCCCCChHHHHHHHHHHcC
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYLK 56 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~~ 56 (266)
.-+.|.||+|+|||||+++++....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3477999999999999999987654
No 498
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.00 E-value=0.013 Score=47.94 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred ceeEEecCCCCChHHHHHHHHHHc
Q 024550 32 RGYLLYGPPGTGKSSLIAAMANYL 55 (266)
Q Consensus 32 ~~iLl~GppGtGKT~la~ala~~~ 55 (266)
..|+|.|++|+|||+|+.++....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 359999999999999999998643
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.98 E-value=0.013 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCceeEEecCCCCChHHHHHHHHH
Q 024550 30 WKRGYLLYGPPGTGKSSLIAAMAN 53 (266)
Q Consensus 30 ~~~~iLl~GppGtGKT~la~ala~ 53 (266)
....+++.|++|+|||+++..+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455699999999999999999853
No 500
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.98 E-value=0.016 Score=45.67 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.7
Q ss_pred eeEEecCCCCChHHHHHHHHHH
Q 024550 33 GYLLYGPPGTGKSSLIAAMANY 54 (266)
Q Consensus 33 ~iLl~GppGtGKT~la~ala~~ 54 (266)
.++|.|+||+|||+|+..+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
Done!