BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024553
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 2 ADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSR 61
+ +R ++E ++DL SV +F D + S +LINNAGI+A
Sbjct: 53 GEAAARTMAGQVEVRELDLQDLSSVRRFADGV----------SGADVLINNAGIMAVPYA 102
Query: 62 LTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVP---SRIVNVTSFTHRNVFNAQVNNET 118
LT +G++ + TN++G F N +P R+V V+S H + ++N E
Sbjct: 103 LTVDGFESQIGTNHLGHF--------ALTNLLLPRLTDRVVTVSSMAH---WPGRINLED 151
Query: 119 ITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNI 176
+ RS+ Y Y SKL L+F+ EL R L S + +AA PG TN+
Sbjct: 152 LN----WRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGS-PLRALAAHPGYSHTNL 204
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 29/192 (15%)
Query: 12 RLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSS--RLTPEGYDQ 69
+++ FQ D S K D+ ++ + L+NNAGI S T + +
Sbjct: 55 QIQFFQHDSSDEDGWTKLFDATEKAF------GPVSTLVNNAGIAVNKSVEETTTAEWRK 108
Query: 70 MMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKC 129
+++ N G FF N + + I+N++S E G
Sbjct: 109 LLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI------------EGFVGD------- 149
Query: 130 YPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAF 189
P Y SK + I S + L K V V PG +KT ++ ++P M+
Sbjct: 150 -PSLGAYNASKGAVRIMSKSAALDCAL-KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ 207
Query: 190 TVLKLLGLLQSP 201
+G + P
Sbjct: 208 RTKTPMGHIGEP 219
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 29/192 (15%)
Query: 12 RLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSS--RLTPEGYDQ 69
+++ FQ D S K D+ ++ + L+NNAGI S T + +
Sbjct: 55 QIQFFQHDSSDEDGWTKLFDATEKAF------GPVSTLVNNAGIAVNKSVEETTTAEWRK 108
Query: 70 MMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKC 129
+++ N G FF N + + I+N++S E G
Sbjct: 109 LLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI------------EGFVGD------- 149
Query: 130 YPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAF 189
P Y SK + I S + L K V V PG +KT ++ ++P M+
Sbjct: 150 -PSLGAYNASKGAVRIMSKSAALDCAL-KDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ 207
Query: 190 TVLKLLGLLQSP 201
+G + P
Sbjct: 208 RTKTPMGHIGEP 219
>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
pdb|3ICC|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis At 1.87 A
Resolution
Length = 255
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 28/167 (16%)
Query: 18 VDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNY 75
+L S V SL L + + +LINNAGI + T + +D+ +S N
Sbjct: 64 ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRXVSVNA 123
Query: 76 IGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARI 135
FF ++ SRI+N++S R P
Sbjct: 124 KAPFFIIQQALSRLRDN---SRIINISSAATR--------------------ISLPDFIA 160
Query: 136 YEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPS 182
Y +K + ++ L + LG +R ++V A PG VKT+ E+ S
Sbjct: 161 YSXTKGAINTXTFTLAKQLG---ARGITVNAILPGFVKTDXNAELLS 204
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 43 HSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVN 100
H ++ +L+NNAGI + R+ + ++ ++ TN F+ N+ RI+N
Sbjct: 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIIN 177
Query: 101 VTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSR 160
++S Q N Y SK ++ F+ L + L SR
Sbjct: 178 ISSIVGLTGNVGQAN--------------------YSSSKAGVIGFTKSLAKELA---SR 214
Query: 161 HVSVIAADPGV------------VKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKG-INS 207
+++V A PG +K NI+ +P+ V L L S + G IN
Sbjct: 215 NITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYING 274
Query: 208 ---VLDAALAP 215
V+D L+P
Sbjct: 275 RVFVIDGGLSP 285
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 46 IQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTS 103
+ LL+NNA ++ +T E +D+ S N F N VP IVNV+S
Sbjct: 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136
Query: 104 FTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVS 163
F P Y +K + + + + LG K R S
Sbjct: 137 MVAHVTF--------------------PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNS 176
Query: 164 VIAADPGVVKTNIMREV---PSF 183
V +P VV T++ ++V P F
Sbjct: 177 V---NPTVVLTDMGKKVSADPEF 196
>pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AG3|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
Length = 269
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 32/166 (19%)
Query: 18 VDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNY 75
+D+SS +SV + +QQ L +++NNAGI + R+ + + +++TN
Sbjct: 83 LDVSSDESVAATLEHIQQHL------GQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTN- 135
Query: 76 IGAFFXXXXXXXXXXNSPVPSRIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARI 135
+ + + RI+N+ S Q N
Sbjct: 136 LNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTN-------------------- 175
Query: 136 YEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVP 181
Y +K L F+ L R +G SR ++V A PG + T++ RE+P
Sbjct: 176 YAAAKAGLEGFTRALAREVG---SRAITVNAVAPGFIDTDMTRELP 218
>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPE|B Chain B, Tropinone Reductase-Ii Complexed With Nadph
pdb|1IPF|A Chain A, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
pdb|1IPF|B Chain B, Tropinone Reductase-Ii Complexed With Nadph And Tropinone
Length = 259
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 7 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS---DMHSSIQLLINNAGIL--ATSSR 61
R+K ++EA DLSS S +Q L+++ H + +L+NNAGI+ +
Sbjct: 53 RSKGFKVEASVCDLSS--------RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD 104
Query: 62 LTPEGYDQMMSTNYIGAF 79
T E Y +MS N+ A+
Sbjct: 105 YTVEDYSLIMSINFEAAY 122
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1|A Chain A, Tropinone Reductase-Ii
Length = 260
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 7 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDS---DMHSSIQLLINNAGIL--ATSSR 61
R+K ++EA DLSS S +Q L+++ H + +L+NNAGI+ +
Sbjct: 54 RSKGFKVEASVCDLSS--------RSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD 105
Query: 62 LTPEGYDQMMSTNYIGAF 79
T E Y +MS N+ A+
Sbjct: 106 YTVEDYSLIMSINFEAAY 123
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 7 RNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGI--LATSSRLTP 64
R + A + D+S V + + + + I L+NNAG+ S LT
Sbjct: 54 RAEGALTDTITADISDMADVRRLTTHIVER------YGHIDCLVNNAGVGRFGALSDLTE 107
Query: 65 EGYDQMMSTNYIGAFF 80
E +D M+TN G FF
Sbjct: 108 EDFDYTMNTNLKGTFF 123
>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|C Chain C, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|D Chain D, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|E Chain E, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
pdb|3TZH|F Chain F, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(F187a) From Vibrio Cholerae
Length = 251
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 26/141 (18%)
Query: 40 SDMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSR 97
+D + +L+NNAGI + R+ E + +M TN + F R
Sbjct: 81 TDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLT-SIFRLSKAVLRGMMKKRQGR 139
Query: 98 IVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLD 157
I+NV S Q N Y +K ++ F+ + R +
Sbjct: 140 IINVGSVVGTMGNAGQAN--------------------YAAAKAGVIGFTKSMAREV--- 176
Query: 158 KSRHVSVIAADPGVVKTNIMR 178
SR V+V PG ++T++ +
Sbjct: 177 ASRGVTVNTVAPGAIETDMTK 197
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 41 DMHSSIQLLINNAGILATSS--RLTPEGYDQMMSTNYIGAF 79
D + +I +L+NNAGIL S +++ + +D + + IG F
Sbjct: 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTF 431
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 44 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAF 79
++ ++INNAGIL A+ ++T + Y ++ + GAF
Sbjct: 90 GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAF 127
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 27/139 (19%)
Query: 44 SSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 101
+ ++ +N+G+++ +TPE +D++ + N G FF V
Sbjct: 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF------------------VAR 147
Query: 102 TSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRH 161
++ H + + +ITG+ +K P +Y SK + F+ + ++ DK
Sbjct: 148 EAYKHLEIGGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-ADKKIT 202
Query: 162 VSVIAADPGVVKTNIMREV 180
V+V+A PG +KT++ V
Sbjct: 203 VNVVA--PGGIKTDMYHAV 219
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 41 DMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 98
D I +L+NNAGI + +++ + +D +++TN A+ +I
Sbjct: 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKI 137
Query: 99 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 158
+N+TS Q N Y SK L+ F+ + +
Sbjct: 138 INITSIAGIIGNAGQAN--------------------YAASKAGLIGFTKSIAKEFA--- 174
Query: 159 SRHVSVIAADPGVVKTNIMREVPSFLSLM 187
++ + A PG++KT++ +P + M
Sbjct: 175 AKGIYCNAVAPGIIKTDMTDVLPDKVKEM 203
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 27/139 (19%)
Query: 44 SSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 101
+ ++ +N+G+++ +TPE +D++ + N G FF V
Sbjct: 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF------------------VAR 147
Query: 102 TSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRH 161
++ H + + +ITG+ +K P +Y SK + F+ + ++ DK
Sbjct: 148 EAYKHLEIGGRLILMGSITGQ----AKAVPKHAVYSGSKGAIETFARCMAIDM-ADKKIT 202
Query: 162 VSVIAADPGVVKTNIMREV 180
V+V+A PG +KT++ V
Sbjct: 203 VNVVA--PGGIKTDMYHAV 219
>pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
pdb|4HP8|B Chain B, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
Length = 247
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 7 RNKDARLEAFQVDLSSFQSVL-KFKDSLQQWLLDSDMHSSIQLLINNAGIL--ATSSRLT 63
R D L+ D + ++L F D L DS + +L+NNAGI+ A S +
Sbjct: 42 RAPDETLDIIAKDGGNASALLIDFADPLAA--KDSFTDAGFDILVNNAGIIRRADSVEFS 99
Query: 64 PEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSF 104
+D++M N FF ++VN+ S
Sbjct: 100 ELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL 140
>pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZL|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 44/198 (22%)
Query: 31 DSLQQWLLDSDMHSS-IQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXX 87
D++ + + H +++L++NAG+ A + R+T E ++++++ N GAF
Sbjct: 66 DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF-------- 117
Query: 88 XXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIF 146
R+ S + RN F + +++G + + ++ Y SK ++
Sbjct: 118 ---------RVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQAN-----YAASKAGVIGM 163
Query: 147 SYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGIN 206
+ + R L +V+ PG + T++ R + + A + P K +
Sbjct: 164 ARSIAREL---SKANVTANVVAPGYIDTDMTRALDERIQQGALQFI--------PAKRVG 212
Query: 207 SVLDAALAPPETSGVYFF 224
+ P E +GV F
Sbjct: 213 T-------PAEVAGVVSF 223
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 41 DMHSSIQLLINNAGILATS--SRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRI 98
D+ + +L+NNAG+ + R+ E +D +++TN G F RI
Sbjct: 78 DVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRI 136
Query: 99 VNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDK 158
VN+ S +TG P Y +K ++ + + L
Sbjct: 137 VNIASVVG------------VTGN--------PGQANYVAAKAGVIGLTKTSAKELA--- 173
Query: 159 SRHVSVIAADPGVVKTNI 176
SR+++V A PG + T++
Sbjct: 174 SRNITVNAIAPGFIATDM 191
>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l
pdb|2NTN|B Chain B, Crystal Structure Of Maba-c60v/g139a/s144l
Length = 267
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 4 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 60
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 64 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 118
Query: 61 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 119
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 119 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIASV 161
Query: 120 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 179
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 162 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 213
Query: 180 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 224
+ + A + P K + + P E +GV F
Sbjct: 214 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 243
>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZM|B Chain B, Maba From Mycobacterium Tuberculosis
pdb|1UZN|A Chain A, Maba From Mycobacterium Tuberculosis
pdb|1UZN|B Chain B, Maba From Mycobacterium Tuberculosis
Length = 247
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 49/225 (21%)
Query: 4 ITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSS-IQLLINNAGILATS--S 60
+T R A F V++ S D++ + + H +++L++NAG+ A +
Sbjct: 44 VTHRGSGAPKGLFGVEVDVTDS-----DAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLM 98
Query: 61 RLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNVTSFT-HRNVFNAQVNNETI 119
R+T E ++++++ N GAF R+ S + RN F + ++
Sbjct: 99 RMTEEKFEKVINANLTGAF-----------------RVAQRASRSMQRNKFGRMIFIGSV 141
Query: 120 TGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMRE 179
+G + + ++ Y SK ++ + + R L +V+ PG + T++ R
Sbjct: 142 SGLWGIGNQAN-----YAASKAGVIGMARSIAREL---SKANVTANVVAPGYIDTDMTRA 193
Query: 180 VPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAALAPPETSGVYFF 224
+ + A + P K + + P E +GV F
Sbjct: 194 LDERIQQGALQFI--------PAKRVGT-------PAEVAGVVSF 223
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 41 DMHSSIQLLINNAG--ILATSSRLTPEGYDQMMSTNYIGAFF 80
D I L+NN G L+ + ++ +G+ ++ TN G F+
Sbjct: 96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFY 137
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 44 SSIQLLINNAGILATSS----RLTP-EGYDQMMSTNYIGAFF 80
+I +L+NNAGI S TP E +D++M+ N G F
Sbjct: 79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 145 IFSYELHRNLGLDKSRHVS------VIAADPGVVKT 174
+FS + H N+ L + RHV+ V+ AD GVV T
Sbjct: 265 VFSQDPHENVVLGEGRHVALDTFGCVVYADRGVVAT 300
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 44 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 101
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 102 TS 103
+S
Sbjct: 152 SS 153
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 44 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 101
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 102 TS 103
+S
Sbjct: 152 SS 153
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 44 SSIQLLINNAGIL--ATSSRLTPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPVPSRIVNV 101
++ ++INNAG+ S L+ + +++++ TN GAF + + ++N+
Sbjct: 92 GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINM 151
Query: 102 TS 103
+S
Sbjct: 152 SS 153
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 28/177 (15%)
Query: 2 ADITSRNKDARLEAFQVDLSSFQSVLKFKDSLQQWLLDSDMHSSIQLLINNAGILATSSR 61
A+ S L ++ DLS+ + +L +++ HS + + INNAG+ +
Sbjct: 74 AECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR------SQHSGVDICINNAGLARPDTL 127
Query: 62 L--TPEGYDQMMSTNYIGAFFXXXXXXXXXXNSPV-PSRIVNVTSFTHRNVFNAQVNNET 118
L + G+ M + N + V I+N+ S + V V +
Sbjct: 128 LSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTH-- 185
Query: 119 ITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTN 175
Y +K + + L + L + H+ PGVV+T
Sbjct: 186 ----------------FYSATKYAVTALTEGLRQEL-REAQTHIRATCISPGVVETQ 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,847,041
Number of Sequences: 62578
Number of extensions: 250743
Number of successful extensions: 594
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 40
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)