Query 024554
Match_columns 266
No_of_seqs 161 out of 391
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 2.5E-67 5.4E-72 474.8 17.0 259 1-266 37-302 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 8.5E-50 1.9E-54 340.1 14.1 168 68-237 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 3E-33 6.6E-38 269.5 12.4 201 56-259 273-487 (713)
4 PHA02819 hypothetical protein; 36.8 56 0.0012 24.2 3.6 32 208-245 2-33 (71)
5 PF08262 Lem_TRP: Leucophaea m 34.4 16 0.00035 17.0 0.3 6 114-119 3-8 (10)
6 KOG4404 Tandem pore domain K+ 33.3 52 0.0011 31.4 3.7 87 62-154 35-143 (350)
7 PHA02650 hypothetical protein; 32.3 69 0.0015 24.3 3.5 33 208-246 2-34 (81)
8 PHA02975 hypothetical protein; 32.1 74 0.0016 23.5 3.5 32 208-245 2-33 (69)
9 PHA02844 putative transmembran 32.1 70 0.0015 23.9 3.5 33 208-246 2-34 (75)
10 PF03735 ENT: ENT domain; Int 28.6 97 0.0021 23.0 3.8 32 61-96 26-57 (73)
11 PHA02692 hypothetical protein; 26.3 1.1E+02 0.0023 22.7 3.6 33 208-246 2-34 (70)
12 KOG2412 Nuclear-export-signal 21.9 4.9E+02 0.011 26.7 8.3 46 131-180 377-423 (591)
13 PF11588 DUF3243: Protein of u 21.1 35 0.00077 25.9 0.2 27 74-101 40-66 (81)
14 PF14003 YlbE: YlbE-like prote 21.1 1.8E+02 0.0039 21.2 3.9 17 136-152 3-19 (65)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-67 Score=474.83 Aligned_cols=259 Identities=51% Similarity=0.814 Sum_probs=243.4
Q ss_pred CCCCCCceEEEe-eccCCCCCCCcccCCcchhhccchhhhcc-----cccccccccCCCCCCCCcCCCHHHHHHHHHHHH
Q 024554 1 MDERGGSFVAVR-RISQGLDRGNTCHSTSAEVVAGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQL 74 (266)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~ 74 (266)
|++..|..+||+ +.|.+.+.....+.++.+...|+.+|+|+ ++.|.+...+..+..++..+.+.|+++++.+++
T Consensus 37 ~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~ 116 (302)
T KOG2998|consen 37 TDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEE 116 (302)
T ss_pred hcCCCCCcceeecchhhhhhhhhhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHH
Confidence 578899999999 78888888888888999999999999999 999999999999999999999999999999999
Q ss_pred hhcccCCCCcHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHhhCcHHHHHHHHh
Q 024554 75 RIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKSFQDLLRK 154 (266)
Q Consensus 75 ~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyFa~~~~~~~~~il~~ 154 (266)
+.++|||.+|++|+++|++||+.++|++++++++|++|++|||||+||+|||||+|+|||+||+|||++||+.+++++.+
T Consensus 117 ~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~ 196 (302)
T KOG2998|consen 117 LRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLK 196 (302)
T ss_pred HHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCC-ccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHH
Q 024554 155 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKP-RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN 233 (266)
Q Consensus 155 q~~~~~~~~yPFAvagINiT~~L~~~L~~~~~~~-~~~~~~~f~~ll~~~~~aF~eLy~~~f~~f~~~W~~~~at~mDF~ 233 (266)
|. ++.|+|||||||||||+|++++|+.++++. .++....| +++.+|+.|||++|..||++|+++++||||||
T Consensus 197 s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn 269 (302)
T KOG2998|consen 197 SR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFN 269 (302)
T ss_pred cC--CCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 65 566999999999999999999999999844 44443333 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccCCCccccccC
Q 024554 234 TVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 266 (266)
Q Consensus 234 ~Vl~~~r~qL~r~L~~~~~~~i~~~~~~~~~~~ 266 (266)
.|++++|.|++++|++.|+..+.|+|+|++|.+
T Consensus 270 ~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~~ 302 (302)
T KOG2998|consen 270 TVLKSFRRQLERELSLDDVLLITDLPAFNLLLQ 302 (302)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccchhhhhhcC
Confidence 999999999999999999999999999999964
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=8.5e-50 Score=340.14 Aligned_cols=168 Identities=43% Similarity=0.767 Sum_probs=152.4
Q ss_pred HHHHHHHhhcccCCCCcHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHhhCcHH
Q 024554 68 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPKS 147 (266)
Q Consensus 68 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyFa~~~~~~ 147 (266)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeec-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 024554 148 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR 226 (266)
Q Consensus 148 ~~~il~~q~~~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~aF~eLy~~~f~~f~~~W~~~~ 226 (266)
+++|+.++.++.+.++||||+||||||.+|+++|+++...+.... .+... +.+.+.+|++|||++|.+|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999988776678999999999999999999999766443332 22222 567789999999999999999999999
Q ss_pred CChhcHHHHHH
Q 024554 227 ASYMDFNTVMK 237 (266)
Q Consensus 227 at~mDF~~Vl~ 237 (266)
+|+|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=3e-33 Score=269.52 Aligned_cols=201 Identities=27% Similarity=0.494 Sum_probs=183.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHhCCCccc-----------ccchhhhHhHhcCCC-CCCC
Q 024554 56 RPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPS 123 (266)
Q Consensus 56 ~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~s~~Wk~lGFQg-~dP~ 123 (266)
...++|+.+|...+..+..|+.++.|+.+++..+.++++-..+|.++.. .....+..|.+||.. .||+
T Consensus 273 ~~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa 352 (713)
T KOG2999|consen 273 ERPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPA 352 (713)
T ss_pred cchHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChH
Confidence 3346899999999999999999999999999999999999999987432 235678999999999 9999
Q ss_pred CCCC--cchhhHHhhHHHHHhhCcHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccceeeccc
Q 024554 124 TDFR--GGGFISLENLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLS 201 (266)
Q Consensus 124 TDFR--g~GiLgL~~LlyFa~~~~~~~~~il~~q~~~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~ll~ 201 (266)
.||- .+|+|+|+||+|||++||+.+.+++.++++|.++++|||+.++|.+|.|||++|+.+++ +......|.|+||
T Consensus 353 ~df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~--p~E~~~df~pmfF 430 (713)
T KOG2999|consen 353 QDFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEP--PDELDRDFIPMFF 430 (713)
T ss_pred HhcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCC--chhhcCccceeee
Confidence 9998 89999999999999999999999999999999999999999999999999999999864 4455567999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHhhcccccccccCCC
Q 024554 202 ENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP 259 (266)
Q Consensus 202 ~~~~aF~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~L~~~~~~~i~~~~ 259 (266)
.++..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|... .++++++-
T Consensus 431 thd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 431 THDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 9999999999999999999999999999999999999999999999865 77776653
No 4
>PHA02819 hypothetical protein; Provisional
Probab=36.84 E-value=56 Score=24.18 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 024554 208 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 245 (266)
Q Consensus 208 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r 245 (266)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 67999999888 677888999999999887754
No 5
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=34.41 E-value=16 Score=16.97 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.7
Q ss_pred HhcCCC
Q 024554 114 EMGWQG 119 (266)
Q Consensus 114 ~lGFQg 119 (266)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 6
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=33.30 E-value=52 Score=31.39 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHhCCCcccccchhhhHh-------------HhcCCCCCCCCCCC-
Q 024554 62 TPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR- 127 (266)
Q Consensus 62 ~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk-------------~lGFQg~dP~TDFR- 127 (266)
...+++++++-++..+..|+-++++-+.+..-+-+. .| ...+.+|| .|||-.+.|+||--
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s-~p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK 108 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEEDYRELERVILKS-EP-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGK 108 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhc-Cc-----cccccccccCcceEEEEEEEeeeccCCCCCCCcCce
Confidence 346777888888888999998888776665554433 33 34567887 57898999999954
Q ss_pred ----cchhhHHh-hHHH---HHhhCcHHHHHHHHh
Q 024554 128 ----GGGFISLE-NLLY---LARNFPKSFQDLLRK 154 (266)
Q Consensus 128 ----g~GiLgL~-~Lly---Fa~~~~~~~~~il~~ 154 (266)
.-|++|.- .|+. |-++-......+++.
T Consensus 109 ~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 109 AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444442 3333 345555555555543
No 7
>PHA02650 hypothetical protein; Provisional
Probab=32.33 E-value=69 Score=24.27 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024554 208 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 246 (266)
Q Consensus 208 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~ 246 (266)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcCC
Confidence 67999999888 7778889999999998877543
No 8
>PHA02975 hypothetical protein; Provisional
Probab=32.10 E-value=74 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHH
Q 024554 208 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 245 (266)
Q Consensus 208 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r 245 (266)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 67899999888 677888999999999877653
No 9
>PHA02844 putative transmembrane protein; Provisional
Probab=32.07 E-value=70 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024554 208 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 246 (266)
Q Consensus 208 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~ 246 (266)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 67899999888 6778889999999998877543
No 10
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=28.60 E-value=97 Score=22.97 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHH
Q 024554 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 96 (266)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 96 (266)
|+..|+..|..|++..+ .+|.+|...|..+-+
T Consensus 26 lsweke~lLt~Lr~~L~----IS~e~H~~~l~~~~~ 57 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELN----ISDEEHREELRRAVS 57 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHhc
Confidence 79999999999987665 468899998887743
No 11
>PHA02692 hypothetical protein; Provisional
Probab=26.30 E-value=1.1e+02 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024554 208 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 246 (266)
Q Consensus 208 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~ 246 (266)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 67899998888 5566679999999998877654
No 12
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=21.95 E-value=4.9e+02 Score=26.74 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=28.2
Q ss_pred hhHHh-hHHHHHhhCcHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHH
Q 024554 131 FISLE-NLLYLARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQM 180 (266)
Q Consensus 131 iLgL~-~LlyFa~~~~~~~~~il~~q~~~~~~~~yPFAvagINiT~~L~~~ 180 (266)
.|+.+ ||.++|+..-.....-+. + .++..||+|.+.+-|-...-++
T Consensus 377 pl~~~~~~~~iaka~V~Q~Etev~---~-~PeaAfPla~V~l~i~~q~Pdv 423 (591)
T KOG2412|consen 377 PLAYDWCLNFIAKAFVKQAETEVA---S-KPEAAFPLAKVILYIWSQFPDV 423 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH---h-CCcccchHHHHHHHHHHhCchH
Confidence 35554 788888765433322232 2 3566799999988776655443
No 13
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=21.09 E-value=35 Score=25.94 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=14.9
Q ss_pred HhhcccCCCCcHHHHHHHHHHHHHhCCC
Q 024554 74 LRIDVAYDSSIPEHREALRALWNAAFPD 101 (266)
Q Consensus 74 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 101 (266)
....-.+||.|++ +++|++||+.+..+
T Consensus 40 dyLA~~vdP~N~E-erlLkELW~va~e~ 66 (81)
T PF11588_consen 40 DYLAKNVDPKNPE-ERLLKELWDVADEE 66 (81)
T ss_dssp HHHHT-----SHH-HHHHHHHHHC--HH
T ss_pred HHHHhcCCCCCHH-HHHHHHHHHhCCHH
Confidence 3445678999985 78999999986544
No 14
>PF14003 YlbE: YlbE-like protein
Probab=21.06 E-value=1.8e+02 Score=21.23 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=12.3
Q ss_pred hHHHHHhhCcHHHHHHH
Q 024554 136 NLLYLARNFPKSFQDLL 152 (266)
Q Consensus 136 ~LlyFa~~~~~~~~~il 152 (266)
-|.+|.+.+|.-++.+-
T Consensus 3 el~~fiR~~P~WYR~Ls 19 (65)
T PF14003_consen 3 ELRQFIREQPIWYRILS 19 (65)
T ss_pred HHHHHHHHCcHHHHHHc
Confidence 46778888888777653
Done!