Query 024554
Match_columns 266
No_of_seqs 161 out of 391
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 31.6 56 0.0019 24.8 4.2 31 61-95 43-73 (102)
2 3o39_A Periplasmic protein rel 26.9 94 0.0032 23.5 4.9 36 59-94 16-51 (108)
3 2fmm_E Protein EMSY; ENT domai 24.3 84 0.0029 25.0 4.2 52 61-116 35-90 (133)
4 3d0w_A YFLH protein; GRAM-posi 20.5 38 0.0013 25.9 1.4 27 74-101 62-88 (104)
5 2k19_A Putative piscicolin 126 17.6 89 0.0031 23.5 2.9 22 59-80 75-96 (98)
6 1g2y_A Hepatocyte nuclear fact 16.5 48 0.0016 19.9 0.9 15 59-73 3-17 (32)
7 2zrr_A Mundticin KS immunity p 15.1 84 0.0029 24.5 2.2 22 59-80 95-116 (118)
8 3itf_A Periplasmic adaptor pro 12.7 1.9E+02 0.0066 22.9 3.9 42 56-97 41-82 (145)
9 2xoa_A Ryanodine receptor 1; m 12.6 4.2E+02 0.014 25.5 7.0 97 131-246 442-554 (559)
10 2hwv_A DNA-binding response re 12.3 96 0.0033 23.3 1.9 35 59-98 42-76 (121)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=31.60 E-value=56 Score=24.83 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHH
Q 024554 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 95 (266)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 95 (266)
|+..|+..|..|++.. ..+|.+|...|..+-
T Consensus 43 Lsweke~LLt~LR~~L----~IS~eeH~~elrr~~ 73 (102)
T 1uz3_A 43 LTKEKKDLLGELSKVL----SISTERHRAEVRRAV 73 (102)
T ss_dssp CCHHHHHHHHHHHHHT----TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHhc
Confidence 8999999999997665 556999999887763
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=26.89 E-value=94 Score=23.55 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHH
Q 024554 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 94 (266)
..||..|+..++.|.+......+....+-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999877777665554444555544
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=24.34 E-value=84 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHhCCC---ccc-ccchhhhHhHhc
Q 024554 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD---EEL-RDLISEQWKEMG 116 (266)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~~-~~~~s~~Wk~lG 116 (266)
|+..|+..|..|++.. ..++.+|...|.++-+.-.-. +.. .+..+.+|..-|
T Consensus 35 LSweke~LLt~LR~~L----~IS~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 35 LTKEKKDLLGELSKVL----SISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp CCHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 8999999999997665 456899998887764421000 000 123567888777
No 4
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=20.54 E-value=38 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=21.0
Q ss_pred HhhcccCCCCcHHHHHHHHHHHHHhCCC
Q 024554 74 LRIDVAYDSSIPEHREALRALWNAAFPD 101 (266)
Q Consensus 74 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 101 (266)
...--.+||.|++ +++|++||+.+..+
T Consensus 62 dyLA~~vdP~N~E-erlLkELW~Va~ee 88 (104)
T 3d0w_A 62 DYLAKHEEPQNGE-EMLLQELWSVADED 88 (104)
T ss_dssp HHHHTCCCCCSHH-HHHHHHHHHHCCHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCHH
Confidence 3445679999985 79999999987544
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=17.58 E-value=89 Score=23.51 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccC
Q 024554 59 FDLTPAQEECLQRLQLRIDVAY 80 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (266)
..|++.|++.|..|++..++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5699999999999999888765
No 6
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=16.49 E-value=48 Score=19.88 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=12.2
Q ss_pred cCCCHHHHHHHHHHH
Q 024554 59 FDLTPAQEECLQRLQ 73 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~ 73 (266)
.+|+++|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 568999999988774
No 7
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=15.12 E-value=84 Score=24.45 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccC
Q 024554 59 FDLTPAQEECLQRLQLRIDVAY 80 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (266)
..|++.|++.|+.|++..++-|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5689999999999998887755
No 8
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=12.71 E-value=1.9e+02 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCCcCCCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHH
Q 024554 56 RPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (266)
Q Consensus 56 ~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~ 97 (266)
.-...||+.|+..|+.|.+........-+.+..+.|..|...
T Consensus 41 ~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~a 82 (145)
T 3itf_A 41 FDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTA 82 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHcc
Confidence 345789999999999998765554444455555556655443
No 9
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=12.60 E-value=4.2e+02 Score=25.51 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=42.9
Q ss_pred hhHHhhHHHHHhhCcH---------------HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccc
Q 024554 131 FISLENLLYLARNFPK---------------SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGAT 195 (266)
Q Consensus 131 iLgL~~LlyFa~~~~~---------------~~~~il~~q~~~~~~~~yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~ 195 (266)
...|+.|++|+..-.. .-|+++++| +|-.+|+++++.-.. .. ....
T Consensus 442 ~~~L~dLi~F~~~~~~~~~~~~~q~~~~~~r~RQkLlrEq----------------~il~ll~~il~~l~~--~~-~~~~ 502 (559)
T 2xoa_A 442 ILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEE----------------GMLSLVLNCIDRLNV--YT-TAAH 502 (559)
T ss_dssp HHHHHHHHHHTCCC---------CCHHHHHHHHHHHHHHT----------------THHHHHHHHHHHHTT--SC-C---
T ss_pred HHHHHHHHHHhcCccccccchhccccccccHHHHHHHhhh----------------chHHHHHHHHHHhhc--cC-chhh
Confidence 3467889999864321 245566664 456667777642111 11 1123
Q ss_pred eeeccccch-hhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHh
Q 024554 196 FLKFLSENE-SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 246 (266)
Q Consensus 196 f~~ll~~~~-~aF~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~ 246 (266)
+..+..++. ..+.++...+++++..+=+..+.+-..|.+-+..+-+||.+.
T Consensus 503 ~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~~ 554 (559)
T 2xoa_A 503 FAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDRL 554 (559)
T ss_dssp ---CCCSTGGGTHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccc
Confidence 333333333 568889999999999999988888888888888888888753
No 10
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=12.30 E-value=96 Score=23.28 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=26.9
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHHHHh
Q 024554 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAA 98 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~ 98 (266)
..||+.+...|..|....+..+. .++++..+|..-
T Consensus 42 i~Lt~~E~~LL~~L~~~~g~vvs-----re~L~~~vW~~~ 76 (121)
T 2hwv_A 42 IELTHREFELLYYLAKHIGQVMT-----REHLLQTVWGYD 76 (121)
T ss_dssp EECCHHHHHHHHHHHHTTTCCBC-----HHHHHHHHTCGG
T ss_pred EECCHHHHHHHHHHHHcCCeEEc-----HHHHHHHHcCCC
Confidence 67999999999988776655543 577888898653
Done!