Query 024554
Match_columns 266
No_of_seqs 161 out of 391
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 10:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024554.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024554hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 27.0 26 0.0019 24.3 3.4 31 61-95 31-61 (90)
2 d1ya0a1 a.118.8.1 (A:1-497) SM 17.2 1E+02 0.0074 26.2 6.2 71 164-250 217-287 (497)
3 d2c1wa1 d.294.1.1 (A:6-289) En 16.2 90 0.0066 25.7 5.2 57 81-142 124-180 (284)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 15.9 18 0.0013 30.4 0.5 42 80-123 386-428 (485)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 11.9 2E+02 0.014 19.6 5.6 76 171-246 59-138 (139)
6 d2ifta1 c.66.1.46 (A:11-193) P 8.4 55 0.004 24.4 1.1 30 125-155 50-85 (183)
7 d1dxea_ c.1.12.5 (A:) 2-dehydr 7.7 1.9E+02 0.014 22.7 4.4 54 72-125 177-236 (253)
8 d1myta_ a.1.1.2 (A:) Myoglobin 7.7 3.1E+02 0.023 18.8 5.4 14 106-119 133-146 (146)
9 d1knza_ e.34.1.1 (A:) NSP3 hom 6.3 4.7E+02 0.034 19.0 6.1 42 206-248 8-49 (157)
10 d1olma1 a.5.3.1 (A:1-75) Super 5.8 2E+02 0.014 17.9 2.8 20 59-78 6-25 (75)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.99 E-value=26 Score=24.32 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHHH
Q 024554 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 95 (266)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 95 (266)
|+..|+..|..|++. +..+|.+|...|.++-
T Consensus 31 lsweke~lLt~LR~~----L~IS~eeHr~elrr~~ 61 (90)
T d1uz3a1 31 LTKEKKDLLGELSKV----LSISTERHRAEVRRAV 61 (90)
T ss_dssp CCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCcHHHHHHHHHhc
Confidence 899999999999765 5567999998887663
No 2
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.22 E-value=1e+02 Score=26.24 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCccccccceeeccccchhhHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHH
Q 024554 164 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 243 (266)
Q Consensus 164 yPFAvagINiT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~aF~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL 243 (266)
=||+.|--|+..++-...+..+..+.......+ ...|-.+++..| .+.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~---------~~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVY---------LSKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHH---------HTCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHH---------hCCchhhHHHHHHHHHHHH
Confidence 377888888777666554432211111100111 113333433332 2567889999999998888
Q ss_pred HHhhccc
Q 024554 244 ERELLLE 250 (266)
Q Consensus 244 ~r~L~~~ 250 (266)
...++..
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8887643
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=16.18 E-value=90 Score=25.66 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCcccccchhhhHhHhcCCCCCCCCCCCcchhhHHhhHHHHHh
Q 024554 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLAR 142 (266)
Q Consensus 81 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyFa~ 142 (266)
..+..+..+.|+.||=..+....-....+.-++.+ |=|+ + -||.++.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE---~-k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGE---S-KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSC---S-SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eecc---c-cCCCcccceehHHHHHH
Confidence 34567899999999999876432222234566655 6665 1 25778999999999874
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.92 E-value=18 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcccccchhhhHhHh-cCCCCCCC
Q 024554 80 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 123 (266)
Q Consensus 80 ~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~l-GFQg~dP~ 123 (266)
|-.+++.+.++|+.||... +...+ -.+|+.|..| ||+|.||.
T Consensus 386 fQDts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 386 FQDTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GGGCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cccCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 4457889999999998642 22112 2478999987 89998874
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=11.94 E-value=2e+02 Score=19.64 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhccCCC---ccccccceeeccccchhhHHHHHHHHHHHHHHHHHhC-CCChhcHHHHHHHHHHHHHHh
Q 024554 171 VNITFMLIQMLDLEAVKP---RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAM-RASYMDFNTVMKSTRRQLERE 246 (266)
Q Consensus 171 INiT~~L~~~L~~~~~~~---~~~~~~~f~~ll~~~~~aF~eLy~~~f~~f~~~W~~~-~at~mDF~~Vl~~~r~qL~r~ 246 (266)
=+||.++-.+.+.+-... ....+...+.+-......+.++....-......+... ......|..++..+...+++-
T Consensus 59 ~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~~ 138 (139)
T d2a61a1 59 STVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMERN 138 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 378888888777663211 1122334444443344556666666666666666664 356778889999888888764
No 6
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=8.36 E-value=55 Score=24.41 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCCcchhhHHhhHH------HHHhhCcHHHHHHHHhh
Q 024554 125 DFRGGGFISLENLL------YLARNFPKSFQDLLRKQ 155 (266)
Q Consensus 125 DFRg~GiLgL~~Ll------yFa~~~~~~~~~il~~q 155 (266)
=|-|+|.+||++|- +|++..++.+ +++.++
T Consensus 50 lFaGsG~~glEalSRGA~~v~fVE~~~~a~-~~ik~N 85 (183)
T d2ifta1 50 GFAGSGSLGFEALSRQAKKVTFLELDKTVA-NQLKKN 85 (183)
T ss_dssp TTCTTCHHHHHHHHTTCSEEEEECSCHHHH-HHHHHH
T ss_pred cccCccceeeeeeeecceeeEEeecccchh-hhHhhH
Confidence 37789999999994 4888887765 344443
No 7
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=7.74 E-value=1.9e+02 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHhhcccCCCCcHHHHHHHHHHHHHhCCC-ccc-----ccchhhhHhHhcCCCCCCCCC
Q 024554 72 LQLRIDVAYDSSIPEHREALRALWNAAFPD-EEL-----RDLISEQWKEMGWQGKDPSTD 125 (266)
Q Consensus 72 L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~-~~~-----~~~~s~~Wk~lGFQg~dP~TD 125 (266)
|..-++.|-+.++|++++++.++-+.+... .+. .....++|.+.||+=---.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 334677888899999999999999887532 221 123457999999985433444
No 8
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=7.69 E-value=3.1e+02 Score=18.83 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.2
Q ss_pred cchhhhHhHhcCCC
Q 024554 106 DLISEQWKEMGWQG 119 (266)
Q Consensus 106 ~~~s~~Wk~lGFQg 119 (266)
....+.+++.||+|
T Consensus 133 ~~l~~~y~e~g~~~ 146 (146)
T d1myta_ 133 ADLEANYKELGFSG 146 (146)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCCC
Confidence 44567899999986
No 9
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=6.30 E-value=4.7e+02 Score=18.98 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhcHHHHHHHHHHHHHHhhc
Q 024554 206 AFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELL 248 (266)
Q Consensus 206 aF~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~qL~r~L~ 248 (266)
.|+--|.+++......-..++.+| ||++|...++....-.+.
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~md 49 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMD 49 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceec
Confidence 466677777777777777787765 799999888876665544
No 10
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=2e+02 Score=17.93 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.8
Q ss_pred cCCCHHHHHHHHHHHHhhcc
Q 024554 59 FDLTPAQEECLQRLQLRIDV 78 (266)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~ 78 (266)
-+|++.|+..|..+++...-
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 35899999999999987654
Done!