Query 024555
Match_columns 266
No_of_seqs 115 out of 250
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 5.9E-66 1.3E-70 450.2 19.8 191 11-214 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 3.6E-55 7.8E-60 395.0 20.4 245 8-264 52-307 (308)
3 PF02228 Gag_p19: Major core p 72.4 4.2 9E-05 30.9 2.9 33 22-54 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 46.2 11 0.00024 35.5 1.5 80 18-98 149-230 (355)
5 PF10305 Fmp27_SW: RNA pol II 28.2 33 0.00072 26.9 1.3 67 83-153 8-74 (103)
6 PRK11593 folB bifunctional dih 27.6 2.1E+02 0.0047 22.5 6.0 33 26-58 52-89 (119)
7 PF15405 PH_5: Pleckstrin homo 26.8 31 0.00067 28.4 1.0 16 162-177 21-36 (135)
8 PF06597 Clostridium_P47: Clos 22.3 1.2E+02 0.0026 30.1 4.3 44 69-130 201-244 (456)
9 PF02152 FolB: Dihydroneopteri 21.8 1.4E+02 0.0029 23.1 3.8 37 21-57 43-85 (113)
10 PRK11245 folX D-erythro-7,8-di 21.3 3E+02 0.0065 21.8 5.7 34 26-59 56-94 (120)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=5.9e-66 Score=450.23 Aligned_cols=191 Identities=48% Similarity=0.856 Sum_probs=170.3
Q ss_pred ceEEEEEEecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEeeecccccCchhH
Q 024555 11 GVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCI 90 (266)
Q Consensus 11 e~v~vDFef~dp~~~DfhgIK~LL~qlf~~~~~~ls~LadlIi~Q~~vGtvVK~~~dde~dvyg~~SvLnl~~~k~~~~i 90 (266)
|+||||||||||+|.||||||+||+|||+.++||+++|||+|++|++||||||++|++|+|||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 68999999999999999999999999999999999999999999999999999965678999999999999999999999
Q ss_pred HHHHHHHHhhcC---ChhHHHHHHHHhccCCCceEEEEeccccCCCccchHHHHHHHHHHHHHhhhcCChhhhcCccCcc
Q 024555 91 KELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRNFFCFK 167 (266)
Q Consensus 91 ~~l~~yll~~~~---~~~~~~~l~~ll~~~~~~vGLlinER~iN~P~ql~ppl~~~L~eei~~a~~~~~~ee~~~~~~F~ 167 (266)
++|++||+++|+ +++..+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999999886 67788999999998889999999999999999999999999999999999875 679999
Q ss_pred EEEEEEeEEeeccccchhhhhhhhhccCCCCCCCceeccChhhhHHH
Q 024555 168 CYLLVSKIYKLKHKNANQKNKRNLKRRSASDSGDEIVYIKPEDEIFH 214 (266)
Q Consensus 168 ~~L~isk~y~~~~~~~~~k~~k~kk~~~~~~~~~~~~y~~pEDE~~~ 214 (266)
|||++||+|++..+..+++ ++| ....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~~~~~~---~~~----~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKKKKRKK---KKK----KKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeecccccccc---ccc----cCCcccceeCChhhhhcC
Confidence 9999999998632211111 111 123468999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=3.6e-55 Score=394.99 Aligned_cols=245 Identities=32% Similarity=0.552 Sum_probs=204.7
Q ss_pred CCCceEEEEEEecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEeccCC-------CCCceEEEEeee
Q 024555 8 KKKGVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDD-------DNTPFSIVTALN 80 (266)
Q Consensus 8 ~~~e~v~vDFef~dp~~~DfhgIK~LL~qlf~~~~~~ls~LadlIi~Q~~vGtvVK~~~dd-------e~dvyg~~SvLn 80 (266)
..+++||+||||++|+|.||||||+||+|+|..++||+++|||+||+|+.+|+|||+++++ .+|+||++|+||
T Consensus 52 ~e~e~vnidFE~~~p~d~D~~giknLL~Qlfl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~ln 131 (308)
T KOG3034|consen 52 VEDEEVNIDFEAYSPSDVDADGIKNLLQQLFLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLN 131 (308)
T ss_pred cccceEeccccccCCCCcchHHHHHHHHHHhccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEee
Confidence 4678999999999999999999999999999999999999999999999999999999653 268899999999
Q ss_pred cccccCchhHHHHHHHHHhhcC---ChhHHHHHHHHhccCCCceEEEEeccccCCCccchHHHHHHHHHHHHHhhhcCCh
Q 024555 81 LRRYKDHKCIKELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPT 157 (266)
Q Consensus 81 l~~~k~~~~i~~l~~yll~~~~---~~~~~~~l~~ll~~~~~~vGLlinER~iN~P~ql~ppl~~~L~eei~~a~~~~~~ 157 (266)
++..++.+||++|.+|+++.|. .+.+.+.|+.++.+++++|||||||||||||+||+||||++|++||+||...+
T Consensus 132 l~~~~~~~~ikqL~~yvL~r~~k~~~k~v~~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~-- 209 (308)
T KOG3034|consen 132 LTARKDTKCIKQLQEYVLRRCKKNAEKEVVEQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN-- 209 (308)
T ss_pred hhhhccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC--
Confidence 9999999999999999999886 56789999999999999999999999999999999999999999999998653
Q ss_pred hhhcCccCccEEEEEEeEEeeccccchhhhhhh-hhccCCCCCCCceeccChhhhHHHhhceeEEEeecCcccccccccc
Q 024555 158 EELRNFFCFKCYLLVSKIYKLKHKNANQKNKRN-LKRRSASDSGDEIVYIKPEDEIFHKLSLWSFSFPMQTQQVETQELK 236 (266)
Q Consensus 158 ee~~~~~~F~~~L~isk~y~~~~~~~~~k~~k~-kk~~~~~~~~~~~~y~~pEDE~~~~~a~~~~~~~~~~~~~~~~~~~ 236 (266)
++|.|.||+++.+.|....+....+++.. +++++..-+..++.|+||||+++...+.....|..+ ..+..+.
T Consensus 210 ----kp~~f~~~lll~~~y~~eakk~~~s~~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~---~d~~~~~ 282 (308)
T KOG3034|consen 210 ----KPYDFCYFLLLVKTYFVEAKKGKSSEKPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAG---VDPGVIF 282 (308)
T ss_pred ----CccceEEEEEEEEEeeehhccCCCcccccccHHHHhhhccchhhccchHhhhhhhhhccccccccC---CCCcccc
Confidence 67999999999999987543321111111 111122345678999999999666666667666555 1122333
Q ss_pred ccceeeEEEEEeCCCHHHHHHHHHHhhh
Q 024555 237 NYRLMGLVMAVEAAKIPTFRQELQSLIV 264 (266)
Q Consensus 237 ~~~~~~~vmli~~~~~~~~~~~l~~~~~ 264 (266)
. +|.+|+++.++|.+++++++..++
T Consensus 283 ~---~r~l~il~~~~~~~~i~kl~~~i~ 307 (308)
T KOG3034|consen 283 H---FRRLLILDDEKFDALIDKLQDEIS 307 (308)
T ss_pred c---cceEEEeeccchHHHHHHHHhhhc
Confidence 3 566999999999999999997664
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=72.45 E-value=4.2 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=24.4
Q ss_pred CCCCcHHHHHHHHHHhhc----cCCCChhhHHHHHHc
Q 024555 22 PKPDDFHGVKILLQTYLD----DAQWDLSGFVDLILA 54 (266)
Q Consensus 22 p~~~DfhgIK~LL~qlf~----~~~~~ls~LadlIi~ 54 (266)
|++-|||-+|++|.-.+. -++||.|=||.+|=.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 555699999999986664 468999999998755
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=46.15 E-value=11 Score=35.52 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=53.6
Q ss_pred EecCCCCC-cHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecc-CCCCCceEEEEeeecccccCchhHHHHHH
Q 024555 18 VFFDPKPD-DFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEG-DDDNTPFSIVTALNLRRYKDHKCIKELKE 95 (266)
Q Consensus 18 ef~dp~~~-DfhgIK~LL~qlf~~~~~~ls~LadlIi~Q~~vGtvVK~~~-dde~dvyg~~SvLnl~~~k~~~~i~~l~~ 95 (266)
.|+||-|+ |+|.+=+-|...+..+-++.-+++|+.+++..|| |+..+. |=.+..|-|=-.+--...-.-++......
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VG-VlTlDNQDLnG~~YDFGDFv~t~pG~Gv~~~~SYYS 227 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVG-VLTLDNQDLNGQFYDFGDFVQTQPGMGVPVCDSYYS 227 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeE-EEccCccccCCceecccceeecCCCCCceeehhHHH
Confidence 58999997 9999999999999888899999999999999888 333331 11234443332222222233444555555
Q ss_pred HHH
Q 024555 96 FLL 98 (266)
Q Consensus 96 yll 98 (266)
|++
T Consensus 228 YmM 230 (355)
T PF06478_consen 228 YMM 230 (355)
T ss_pred HHh
Confidence 544
No 5
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=28.20 E-value=33 Score=26.92 Aligned_cols=67 Identities=10% Similarity=0.228 Sum_probs=46.0
Q ss_pred cccCchhHHHHHHHHHhhcCChhHHHHHHHHhccCCCceEEEEeccccCCCccchHHHHHHHHHHHHHhhh
Q 024555 83 RYKDHKCIKELKEFLLKVCLEKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATE 153 (266)
Q Consensus 83 ~~k~~~~i~~l~~yll~~~~~~~~~~~l~~ll~~~~~~vGLlinER~iN~P~ql~ppl~~~L~eei~~a~~ 153 (266)
++-..++|+.+..+-..... ...+....+++....+...-.+|+++.. .-.|||.+.+++++.....
T Consensus 8 ~~~S~SWi~ri~~~k~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~il~~--~~~ppL~~~~~~~l~l~i~ 74 (103)
T PF10305_consen 8 ENNSTSWIRRIRKAKRTQKR--RIKENRSYLWGNDDVPDDIDENENILPY--PQRPPLMRAIFEDLDLTID 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCCCCCCccccCcccccC--CCCcHhHHHHHhcccEEEe
Confidence 34445677777777665443 2445556667665466677778888755 4679999999999987664
No 6
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=27.60 E-value=2.1e+02 Score=22.49 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhhccCCCCh-----hhHHHHHHcCCCc
Q 024555 26 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 58 (266)
Q Consensus 26 DfhgIK~LL~qlf~~~~~~l-----s~LadlIi~Q~~v 58 (266)
||..|-..+..+..+.+|++ .++|+.|+.+-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998888884 5578888877543
No 7
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=26.75 E-value=31 Score=28.44 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.3
Q ss_pred CccCccEEEEEEeEEe
Q 024555 162 NFFCFKCYLLVSKIYK 177 (266)
Q Consensus 162 ~~~~F~~~L~isk~y~ 177 (266)
..|-|||||+++|.-.
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 3589999999999743
No 8
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=22.32 E-value=1.2e+02 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=24.5
Q ss_pred CCCceEEEEeeecccccCchhHHHHHHHHHhhcCChhHHHHHHHHhccCCCceEEEEecccc
Q 024555 69 DNTPFSIVTALNLRRYKDHKCIKELKEFLLKVCLEKDVIKDLRLFMGEQANDVGLLVSQRVV 130 (266)
Q Consensus 69 e~dvyg~~SvLnl~~~k~~~~i~~l~~yll~~~~~~~~~~~l~~ll~~~~~~vGLlinER~i 130 (266)
+.-.+|++++++=+...+.. + +..=..+|. ...+.||+||+++.
T Consensus 201 ~~s~lgvL~m~~~r~~~~~l--q---------------~~vD~~~l~-~~~~agflIS~~~F 244 (456)
T PF06597_consen 201 DDSYLGVLSMTENRDISGNL--Q---------------QQVDPSALP-SGSNAGFLISEELF 244 (456)
T ss_pred CCceEEEEEEEcCCCCcccc--c---------------cccChhhcc-CCCceeEEecHHHH
Confidence 45688888888755442110 0 011112333 34579999998763
No 9
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=21.80 E-value=1.4e+02 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCCCC-cHHHHHHHHHHhhccCCCC-----hhhHHHHHHcCCC
Q 024555 21 DPKPD-DFHGVKILLQTYLDDAQWD-----LSGFVDLILAQTT 57 (266)
Q Consensus 21 dp~~~-DfhgIK~LL~qlf~~~~~~-----ls~LadlIi~Q~~ 57 (266)
+..+. ||..+...++.++...+|+ ...+++.|.++-.
T Consensus 43 ~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~ 85 (113)
T PF02152_consen 43 DLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFP 85 (113)
T ss_dssp TGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCC
Confidence 44554 9999999999999888888 3447777777644
No 10
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=21.27 E-value=3e+02 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhhccCCCCh-----hhHHHHHHcCCCcc
Q 024555 26 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTVG 59 (266)
Q Consensus 26 DfhgIK~LL~qlf~~~~~~l-----s~LadlIi~Q~~vG 59 (266)
||..+-..+.++.....|.+ .+++++|+++..+.
T Consensus 56 dY~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~ 94 (120)
T PRK11245 56 NYRTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVT 94 (120)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCcc
Confidence 89999999999998777873 55788888765543
Done!