Query 024555
Match_columns 266
No_of_seqs 115 out of 250
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 10:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 65.8 2.1 0.00016 32.2 3.2 39 22-61 39-81 (137)
2 d1vhsa_ d.108.1.1 (A:) Putativ 40.0 39 0.0029 24.0 6.9 63 18-81 3-72 (165)
3 d1s3za_ d.108.1.1 (A:) Aminogl 36.0 25 0.0018 24.4 5.0 58 18-79 4-63 (147)
4 d1yr0a1 d.108.1.1 (A:4-166) Ph 33.9 32 0.0023 24.4 5.4 61 19-82 4-73 (163)
5 d1yvoa1 d.108.1.1 (A:4-172) Hy 32.9 20 0.0015 25.9 4.1 61 20-82 3-72 (169)
6 d2ozga2 d.108.1.10 (A:8-290) P 25.1 91 0.0067 24.4 7.3 28 17-44 2-29 (283)
7 d2rnrb1 b.55.1.9 (B:1-108) TFI 22.0 22 0.0016 25.4 2.3 26 14-39 74-101 (108)
8 d1b9la_ d.96.1.3 (A:) 7,8-dihy 21.0 99 0.0072 21.3 5.9 37 22-58 50-92 (119)
9 d1mk4a_ d.108.1.1 (A:) Hypothe 18.4 65 0.0047 22.7 4.4 23 19-41 4-26 (157)
10 d2fe7a1 d.108.1.1 (A:3-158) Pr 17.6 1.5E+02 0.011 20.4 8.8 58 20-79 4-67 (156)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=65.82 E-value=2.1 Score=32.16 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCCcHHHHHHHHHHhhc----cCCCChhhHHHHHHcCCCcceE
Q 024555 22 PKPDDFHGVKILLQTYLD----DAQWDLSGFVDLILAQTTVGTV 61 (266)
Q Consensus 22 p~~~DfhgIK~LL~qlf~----~~~~~ls~LadlIi~Q~~vGtv 61 (266)
|++-|||-+|++|+=.+. .+.||.|-||.+|=. +.-|.|
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk-gypGRv 81 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK-GYPGRV 81 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS-SCSTTH
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC-CCCccH
Confidence 555699999999987664 468999988887644 444443
No 2
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=39.95 E-value=39 Score=24.02 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=43.7
Q ss_pred EecCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEeeec
Q 024555 18 VFFDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 81 (266)
Q Consensus 18 ef~dp~~~DfhgIK~LL~qlf-------~~~~~~ls~LadlIi~Q~~vGtvVK~~~dde~dvyg~~SvLnl 81 (266)
..+...+.|...|..+..++. ...+.+..+..+.+.....-+...-.. ++++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAE-DENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEE-CTTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEE-ecCCceEeeeeeeec
Confidence 345667889999999988754 234566777888887766655555444 345789999877543
No 3
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=36.00 E-value=25 Score=24.38 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=37.9
Q ss_pred EecCCCCCcHHHHHHHHHHhhccCC--CChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEee
Q 024555 18 VFFDPKPDDFHGVKILLQTYLDDAQ--WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 79 (266)
Q Consensus 18 ef~dp~~~DfhgIK~LL~qlf~~~~--~~ls~LadlIi~Q~~vGtvVK~~~dde~dvyg~~SvL 79 (266)
+.+..++.|..++..|.++++.... ....++.+.+.. +....+|..+ ++.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~---~~~~vG~~~~~ 63 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQA-DHLASFIAMA---DGVAIGFADAS 63 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHC-SSEEEEEEEE---TTEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhC-CCcEEEEEEE---CCEEEEEEEEE
Confidence 4567788899999999999985432 334556665554 4434444443 35688887663
No 4
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=33.87 E-value=32 Score=24.38 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred ecCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEeccCCCCCceEEEEeeecc
Q 024555 19 FFDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTV--GTVVKIEGDDDNTPFSIVTALNLR 82 (266)
Q Consensus 19 f~dp~~~DfhgIK~LL~qlf-------~~~~~~ls~LadlIi~Q~~v--GtvVK~~~dde~dvyg~~SvLnl~ 82 (266)
.+...++|..+|..++.++. +..+.+..+..+.+.....- ...|-.. ++.+.|++++....
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 34567789999999988753 23456666666665543322 2333222 45789988776654
No 5
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.85 E-value=20 Score=25.87 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=38.5
Q ss_pred cCCCCCcHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEeccCCCCCceEEEEeeecc
Q 024555 20 FDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTVG--TVVKIEGDDDNTPFSIVTALNLR 82 (266)
Q Consensus 20 ~dp~~~DfhgIK~LL~qlf-------~~~~~~ls~LadlIi~Q~~vG--tvVK~~~dde~dvyg~~SvLnl~ 82 (266)
+...+.|..+|..+++++. +..+.+..+....+..+..-+ -+|-. +.++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVAS--DAAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEE--CTTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEE--ecCCCEEEeecccccc
Confidence 4456789999999988753 344566677776665543322 33333 2356799998775443
No 6
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=25.12 E-value=91 Score=24.35 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.2
Q ss_pred EEecCCCCCcHHHHHHHHHHhhccCCCC
Q 024555 17 FVFFDPKPDDFHGVKILLQTYLDDAQWD 44 (266)
Q Consensus 17 Fef~dp~~~DfhgIK~LL~qlf~~~~~~ 44 (266)
|.+...+++|...|+.|+.+.|.....+
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~ 29 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGD 29 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTH
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCc
Confidence 6778889999999999999999654433
No 7
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.01 E-value=22 Score=25.43 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.3
Q ss_pred EEEEEecCCCCC--cHHHHHHHHHHhhc
Q 024555 14 QADFVFFDPKPD--DFHGVKILLQTYLD 39 (266)
Q Consensus 14 ~vDFef~dp~~~--DfhgIK~LL~qlf~ 39 (266)
.--|.|-+|..- |.+.||.+|+|++.
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~ 101 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLP 101 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 467888887653 88999999999884
No 8
>d1b9la_ d.96.1.3 (A:) 7,8-dihydroneopterin triphosphate epimerase {Escherichia coli [TaxId: 562]}
Probab=21.04 E-value=99 Score=21.33 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.0
Q ss_pred CCCC-cHHHHHHHHHHhhccCCCCh-----hhHHHHHHcCCCc
Q 024555 22 PKPD-DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 58 (266)
Q Consensus 22 p~~~-DfhgIK~LL~qlf~~~~~~l-----s~LadlIi~Q~~v 58 (266)
..+. ||..|...+.+++...++++ .++++.|+....+
T Consensus 50 l~~tvdY~~i~~~i~~~~~~~~~~liE~la~~i~~~i~~~~~v 92 (119)
T d1b9la_ 50 INDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWV 92 (119)
T ss_dssp CSSCCCHHHHHHHHHHHHHTSEESCHHHHHHHHHHHHTCSTTC
T ss_pred hhhhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCCC
Confidence 4443 99999999999998777773 4466777665544
No 9
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=18.41 E-value=65 Score=22.66 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.4
Q ss_pred ecCCCCCcHHHHHHHHHHhhccC
Q 024555 19 FFDPKPDDFHGVKILLQTYLDDA 41 (266)
Q Consensus 19 f~dp~~~DfhgIK~LL~qlf~~~ 41 (266)
.+...++|++.|-.|+++++...
T Consensus 4 iR~~~~~D~~~i~~l~~~~~~~~ 26 (157)
T d1mk4a_ 4 IRTITSSDYEMVTSVLNEWWGGR 26 (157)
T ss_dssp EEECCGGGHHHHHHHTTTSSTTC
T ss_pred EEeCCHHHHHHHHHHHHHHhcCC
Confidence 35667789999999999988543
No 10
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.57 E-value=1.5e+02 Score=20.44 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=37.8
Q ss_pred cCCCCCcHHHHHHHHHHhhc------cCCCChhhHHHHHHcCCCcceEEEeccCCCCCceEEEEee
Q 024555 20 FDPKPDDFHGVKILLQTYLD------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 79 (266)
Q Consensus 20 ~dp~~~DfhgIK~LL~qlf~------~~~~~ls~LadlIi~Q~~vGtvVK~~~dde~dvyg~~SvL 79 (266)
+...+.|...|-.|.+++.. ...++...+...+..++.-..++-... ++.|.|++++.
T Consensus 4 R~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~--~~~ivG~~~~~ 67 (156)
T d2fe7a1 4 RPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLS--EGRPIGYAVFF 67 (156)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEEE--TTEEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEee--CCEEEEEEeEe
Confidence 45677899999999987642 223455667777777766555544442 35688886544
Done!