Query 024556
Match_columns 266
No_of_seqs 30 out of 32
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13563 2_5_RNA_ligase2: 2'-5 96.6 0.0011 2.4E-08 52.6 2.2 95 156-259 26-123 (153)
2 PRK13679 hypothetical protein; 96.3 0.035 7.5E-07 46.8 9.1 122 118-258 3-126 (168)
3 TIGR02258 2_5_ligase 2'-5' RNA 96.2 0.027 5.8E-07 47.0 8.1 124 120-257 5-134 (179)
4 PRK15124 2'-5' RNA ligase; Pro 94.4 0.36 7.8E-06 41.1 9.1 125 117-256 5-134 (176)
5 COG1514 LigT 2'-5' RNA ligase 93.5 0.61 1.3E-05 40.9 9.0 122 120-255 5-132 (180)
6 PF10469 AKAP7_NLS: AKAP7 2'5' 92.9 0.68 1.5E-05 40.1 8.4 130 118-255 3-152 (209)
7 PF02834 LigT_PEase: LigT like 91.0 0.85 1.9E-05 33.8 6.0 77 122-205 1-78 (87)
8 PF08975 2H-phosphodiest: Doma 80.6 6 0.00013 33.2 6.3 65 146-210 44-118 (118)
9 PHA02574 57B hypothetical prot 67.0 20 0.00044 31.0 6.3 113 114-255 6-121 (149)
10 PF05434 Tmemb_9: TMEM9; Inte 60.4 24 0.00052 31.1 5.6 19 22-40 60-78 (149)
11 KOG1502 Flavonol reductase/cin 59.2 12 0.00027 36.3 4.1 52 159-211 81-134 (327)
12 PF09749 HVSL: Uncharacterised 52.0 86 0.0019 28.2 8.0 100 152-258 86-194 (239)
13 PLN00108 unknown protein; Prov 50.4 1.3E+02 0.0028 28.6 9.1 130 115-254 35-198 (257)
14 PF11713 Peptidase_C80: Peptid 43.2 56 0.0012 28.2 5.2 81 131-217 16-116 (157)
15 PF13103 TonB_2: TonB C termin 39.9 55 0.0012 24.0 4.1 41 196-236 27-72 (85)
16 PF12321 DUF3634: Protein of u 36.8 77 0.0017 26.5 4.8 55 174-237 43-97 (108)
17 COG3064 TolA Membrane protein 34.0 36 0.00078 33.8 2.8 48 188-241 324-375 (387)
18 PF06519 TolA: TolA C-terminal 31.7 33 0.00072 27.5 1.9 47 188-241 35-86 (96)
19 cd04925 ACT_ACR_2 ACT domain-c 28.2 25 0.00054 25.9 0.6 41 63-103 8-48 (74)
20 PF15183 MRAP: Melanocortin-2 27.3 1.1E+02 0.0024 25.0 4.2 30 17-46 35-65 (90)
21 COG0309 HypE Hydrogenase matur 23.2 1.2E+02 0.0027 29.9 4.4 65 183-262 257-334 (339)
No 1
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=96.65 E-value=0.0011 Score=52.63 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=62.5
Q ss_pred ceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEEEEcC--CcceEeeeeccCCCChHHHHHHHHHhCC
Q 024556 156 YHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALP 233 (266)
Q Consensus 156 YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leRVV~ts--SGvlL~cwqv~~gtdp~~iR~~LR~alP 233 (266)
.|+|++......+.. ++-.++++.++++.-|+++.++++-.-. ++ +|.+ .+........|+++|.++++
T Consensus 26 pHITL~~~~~~~~~~-------~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~-vi~l-~~~~~~~L~~L~~~l~~~~~ 96 (153)
T PF13563_consen 26 PHITLAFPFDIDDSL-------DELVEALARLAAGFPPFELRLDGFGSFPGKGR-VIFL-NVEPSPELEALHRALREALR 96 (153)
T ss_dssp -EEEEEEEEE--GGG-------HHHHHHHHHHHHHS--EEEEEEEEEEESSSSS-SEEE-EEEE-HHHHHHHHHHHHHHH
T ss_pred CEeEEEecCcccccH-------HHHHHHHHHHHccCCCeEEEEccEEEcCCCCC-EEEE-EcCCCHHHHHHHHHHHHHHH
Confidence 999999886544322 5556678888889999999999999884 45 3333 46555577999999999988
Q ss_pred CCCccCcc-CceeeeehhhhhcCCCCC
Q 024556 234 NAPEKQLY-DPAILHTSFARLLGHPRA 259 (266)
Q Consensus 234 ~AP~kQ~~-d~~IlHTTLaRlL~Pp~~ 259 (266)
....++-. ++.+-|.|+||-+...+.
T Consensus 97 ~~~~~~~~~~~~~PHiTia~~~~~~~~ 123 (153)
T PF13563_consen 97 PFGFKQDSYRPFRPHITIARRLSPKQA 123 (153)
T ss_dssp HHHGGGGGGS----EEEEEEESS----
T ss_pred HcCCccccCCCcceEEEEeccCCcchh
Confidence 77665533 789999999999987763
No 2
>PRK13679 hypothetical protein; Provisional
Probab=96.27 E-value=0.035 Score=46.83 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=79.0
Q ss_pred EEEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEE
Q 024556 118 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIV 197 (266)
Q Consensus 118 Ra~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ 197 (266)
+.+++.+|.+..+.+.+ +++.+.+. .-|+ +| |+|+-. |-..++++++.=++++++++....|+++.
T Consensus 3 ~~iai~~p~~~~~~l~~-~~~~~~~~---~~~v-~p---HITL~f------~g~~~~~~~~~l~~~l~~~~~~~~pf~l~ 68 (168)
T PRK13679 3 YGIVLFPSKKIQDFANS-YRKRYDPH---YALI-PP---HITLKE------PFEISDEQLDSIVEELRAIASETKPFTLH 68 (168)
T ss_pred eEEEEcCCHHHHHHHHH-HHHhhCcc---cccC-CC---ceEEec------CCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 56777777765545533 34555442 2253 44 999975 11234556666677888888899999999
Q ss_pred EeEEEEcC--CcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCCC
Q 024556 198 LDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR 258 (266)
Q Consensus 198 leRVV~ts--SGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~Pp~ 258 (266)
++.+-.=+ +|++-+ .+....+...|+++|++.+=+. +.+ .+.+-|.||||.+++.+
T Consensus 69 l~~~~~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~-~~~--~~f~PHiTlar~~~~~~ 126 (168)
T PRK13679 69 VTKVSSFAPTNNVIYF--KVEKTEELEELHERLHSGDFYG-EAE--YAFVPHITIGQGLSDDE 126 (168)
T ss_pred EeccccCCCCCCEEEE--EccCCHHHHHHHHHHHhccccc-ccC--CCCCCeEEeeCCCCcHH
Confidence 99985532 355533 3554456799999998775322 222 35889999999987543
No 3
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=96.23 E-value=0.027 Score=47.00 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=73.3
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 199 (266)
Q Consensus 120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le 199 (266)
+.+++|+++.+.|.+.-+++-.. .......+++.+|+|+.-- .. .++++++.=.+++++++. .|+++.++
T Consensus 5 iAl~~p~~~~~~l~~~~~~l~~~--~~~~r~~~~~~~HiTL~fl----g~--~~~~~~~~l~~~l~~~~~--~~f~l~l~ 74 (179)
T TIGR02258 5 IAIDLPPEIREQLSRIQRKLKSP--LDGIKWVPPENLHITLKFL----GE--VDEEQVEELEDALAKIAE--PPFTLKLE 74 (179)
T ss_pred EEecCCHHHHHHHHHHHHHhhcc--CCCcEECChHHCEEEEEEc----cC--CCHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 44567777666665554444312 2234556778899999532 11 223333333344445443 46889999
Q ss_pred EEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 024556 200 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP 257 (266)
Q Consensus 200 RVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--P~kQ~~d~~IlHTTLaRlL~Pp 257 (266)
.+-.=+. +++.+ .+....+...|++++++++... +.+. .+..-|.||||...+.
T Consensus 75 ~~~~F~~~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~g~~~~~--~~f~PHiTlar~~~~~ 134 (179)
T TIGR02258 75 GIGVFGNPKRPRVLWA--GVEQSEELTQLHADLERELAKLGFSKEE--RPFTPHITLARKKSGK 134 (179)
T ss_pred eeeeCCCCCCCeEEEE--eeCCCHHHHHHHHHHHHHHHHcCCCCCC--CCcCCCEEEEEecCCc
Confidence 9877544 44432 2443346788889998887543 2122 3688999999987644
No 4
>PRK15124 2'-5' RNA ligase; Provisional
Probab=94.38 E-value=0.36 Score=41.11 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=70.1
Q ss_pred eEEEE-eecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcce
Q 024556 117 VRANV-LYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195 (266)
Q Consensus 117 VRa~V-l~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~ 195 (266)
.|+-+ +++|++..+.+.+..++.... ...=|+ +++.+|+|+.-=. . ..++.++.-.+++.++ ...|++
T Consensus 5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~--~~~rwv-~~~nlHiTL~FlG----~--v~~~~~~~l~~~l~~~--~~~pF~ 73 (176)
T PRK15124 5 KRLFFAIDLPDEIRQQIIHWRATHFPP--EAGRPV-AAANLHLTLAFLG----E--VSAEKQQALSQLAGRI--RQPGFT 73 (176)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHhccc--cCcccc-cccccEEEEEecC----C--CCHHHHHHHHHHHHhc--ccCCeE
Confidence 45544 467877777777766555421 122255 4778999985322 1 3344444444444444 457899
Q ss_pred EEEeEEEEcCCcceEeeeeccCCC-ChHHHHHHHHHhCCCC---CccCccCceeeeehhhhhcCC
Q 024556 196 IVLDRVILTSTGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLGH 256 (266)
Q Consensus 196 ~~leRVV~tsSGvlL~cwqv~~gt-dp~~iR~~LR~alP~A---P~kQ~~d~~IlHTTLaRlL~P 256 (266)
+.++++-.=+..-+|-+ .+..+. +...|-+.|++++-.+ +.+- +..=|-||||..+.
T Consensus 74 l~l~~~g~Fp~prvlwl-g~~~~~~~L~~L~~~l~~~l~~~G~~~e~r---~f~PHiTLaR~~~~ 134 (176)
T PRK15124 74 LTLDDAGQWPRSRVVWL-GMRQPPRGLLQLANMLRSQAARSGCYQSPQ---PFHPHITLLRDASR 134 (176)
T ss_pred EEECcccCcCCCCEEEE-EcCCCCHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCEeeccCCCC
Confidence 99998854443233311 133333 4566666666543211 2222 47789999997653
No 5
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.61 Score=40.90 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=80.6
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCcce-eeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEE
Q 024556 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (266)
Q Consensus 120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~i-w~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (266)
+.+.+|+++++.|.++.+.+-... ++ |+ +++.||+|+-+ +-.++.. .++.=++++++++... |+.+.+
T Consensus 5 iAl~~p~~i~~~i~~~~~~~~~~~---~~k~v-~~en~HiTL~f----lGev~e~--~~~~l~~~l~~i~~~~-~f~i~l 73 (180)
T COG1514 5 IALDPPAEIAERLARIRARLKGAR---AIKWV-EPENLHITLKF----LGEVDED--KADELIEALARIAAPE-PFPITL 73 (180)
T ss_pred EEecCCHHHHHHHHHHHHhcCccc---ccccc-cccCceEEEEc----cCCcCch--HHHHHHHHHHHhhcCC-ceEEEE
Confidence 445667777888877777665432 44 55 56679999964 3334333 2333347888888888 999999
Q ss_pred eEEEEc-CCcceEeeeeccCCC-ChHHHHHHHHHhCCCC---CccCccCceeeeehhhhhcC
Q 024556 199 DRVILT-STGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG 255 (266)
Q Consensus 199 eRVV~t-sSGvlL~cwqv~~gt-dp~~iR~~LR~alP~A---P~kQ~~d~~IlHTTLaRlL~ 255 (266)
+.+-.= +.+.---.|.=..++ +...|.+.+++.+=++ |++. +..=|.|+||+.+
T Consensus 74 ~g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g~~~~~r---~F~PHvTl~r~k~ 132 (180)
T COG1514 74 DGAGSFPNPRRPRVIWVGVEETEELRALAEELERALARLGLRPEER---PFVPHVTLARVKS 132 (180)
T ss_pred eeEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCC---CcCCCEEEEeecc
Confidence 998543 346666666333444 3677778887664444 2233 5788999999998
No 6
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=92.91 E-value=0.68 Score=40.09 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=79.8
Q ss_pred EEEEeec-CcccchHHHHHHHHhcCCCCCc-ceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhh-----
Q 024556 118 RANVLYL-SPKYSVPISDAVKRIFSPHFDK-VIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAED----- 190 (266)
Q Consensus 118 Ra~Vl~l-p~~~a~~i~~av~~vl~p~~d~-~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~----- 190 (266)
=++++|+ .+++...+.+.-.+++....+- .-++++|+.+|+|+..-+ =.+++|++.=.++++.+...
T Consensus 3 hFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~------L~~~~~i~~a~~~L~~~~~~i~~~~ 76 (209)
T PF10469_consen 3 HFLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLS------LDTDEEIEKAKEALKSLKQEIKDQL 76 (209)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEee------CCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4688998 3355555555444455333332 446678999999988663 34455666666666666432
Q ss_pred --cCcceEEEeEEEEcCC-----cceEeeeeccC--C-CChHHHHHHHHHhCCCCCccCcc---CceeeeehhhhhcC
Q 024556 191 --LCPLKIVLDRVILTST-----GVLLGCWQVIS--G-TDPMTIRAKLRTALPNAPEKQLY---DPAILHTSFARLLG 255 (266)
Q Consensus 191 --~cPi~~~leRVV~tsS-----GvlL~cwqv~~--g-tdp~~iR~~LR~alP~AP~kQ~~---d~~IlHTTLaRlL~ 255 (266)
.-|+++.++-+=.=.. -||-+- +.. + .....+.+.|++.|-.+-=...- +...+|.||++.-.
T Consensus 77 ~~~~~~~i~l~Gl~~f~~d~~~~~VLya~--v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~ 152 (209)
T PF10469_consen 77 QNPPPLKITLKGLGYFNDDPSKARVLYAK--VSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSY 152 (209)
T ss_pred cCCCCceEEeeechhhCCCCCcceEEEEc--ccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEeccc
Confidence 3788999987765555 566563 443 2 34566666676666554322211 13689999999876
No 7
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=90.98 E-value=0.85 Score=33.81 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=50.6
Q ss_pred eecCcccchHHHHHHHHhcCCCCCcce-eeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 024556 122 LYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR 200 (266)
Q Consensus 122 l~lp~~~a~~i~~av~~vl~p~~d~~i-w~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leR 200 (266)
+++|++..+.+.+..+++-.-..+-++ |. ++..+|+|+--=.- .+++++.+=+++++.++...-|+.+.+++
T Consensus 1 i~~p~~~~~~L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~~f~~~~~~ 73 (87)
T PF02834_consen 1 IDLPEEIKEQLNQLQERLRQALPPLGIRWV-RPFNPHITLAFLGE------VPPDQLPELIEALANIASRFPPFTLTVDG 73 (87)
T ss_dssp EE-THHHHHHHHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEEEEE------ESHHHHHHHHHHHHHHHCCCB-EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhhccccCCccc-CCCCCeEEEEeCCC------CCHHHHHHHHHHHHhhhccCCCeEEEEeE
Confidence 356777677666655555422233455 77 99999999965431 12556666667888888888899999999
Q ss_pred EEEcC
Q 024556 201 VILTS 205 (266)
Q Consensus 201 VV~ts 205 (266)
+.+=+
T Consensus 74 ~~~f~ 78 (87)
T PF02834_consen 74 FGLFP 78 (87)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 97653
No 8
>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins. ; PDB: 2FSQ_A.
Probab=80.61 E-value=6 Score=33.23 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=29.3
Q ss_pred cceeeeCCCcceEeEeecCCCCCCCCCC-hHHH--HHHHHH-----HHHHHh--hcCcceEEEeEEEEcCCcceE
Q 024556 146 KVIWFQNSSLYHFSMFHASHHISPVPAT-EDEI--EAEATA-----VRAVAE--DLCPLKIVLDRVILTSTGVLL 210 (266)
Q Consensus 146 ~~iw~q~~~~YH~TvFHaSHh~dPvpat-~~ei--~~E~~a-----v~~v~~--~~cPi~~~leRVV~tsSGvlL 210 (266)
++.=+.++++||.|+|---...+=.+.- +.++ +.-++. .+++.+ -.-|+++.+.+.-+.++|.+|
T Consensus 44 ~k~a~lP~sS~HMTVf~Gv~e~~R~~~~WP~~l~~d~~l~~~t~~~~~rL~~f~~~~~f~m~v~~~~~~p~g~~l 118 (118)
T PF08975_consen 44 DKLAFLPPSSYHMTVFEGVIESRREPGFWPADLPLDAPLQECTRYFAERLKGFPLPGPFRMRVTRTGMRPQGIVL 118 (118)
T ss_dssp GGEEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHHHHGGG--------EEE--EEEETTEEEE
T ss_pred cceEecCcchhhhhhhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccccC
Confidence 4455689999999999877555433311 1111 111111 122222 155889999889999998775
No 9
>PHA02574 57B hypothetical protein; Provisional
Probab=66.97 E-value=20 Score=30.96 Aligned_cols=113 Identities=8% Similarity=-0.098 Sum_probs=65.8
Q ss_pred CCCeEEEEe-ecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 024556 114 NPPVRANVL-YLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192 (266)
Q Consensus 114 ~vPVRa~Vl-~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~c 192 (266)
|.++|+-+. .+|+++..+|.+.-++ +.+ .=..+++.+|.|+-= + +..++.+ ..+.-
T Consensus 6 ~~~~RlF~Al~~~~~~r~~L~~lq~~-l~~-----~r~V~~enLHlTL~F-~-------------~~~v~~l---~~~~~ 62 (149)
T PHA02574 6 EFSQGTYVAAKFSEATLDALERLQRT-LRI-----PNPVPRDKLHSTIVY-S-------------RVYVPFI---PASGS 62 (149)
T ss_pred cccceEEEEEcCCHHHHHHHHHHHHh-ccC-----CcccCHHHCEEEEec-C-------------HHHhHHH---hccCC
Confidence 446787766 5677777788766666 322 223478889999855 1 2222233 22557
Q ss_pred cceEEEeEEEEcC--CcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcC
Q 024556 193 PLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255 (266)
Q Consensus 193 Pi~~~leRVV~ts--SGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~ 255 (266)
|+.+.++++=.=+ .|-+ +|--........+.++++.++=. ... ++..=|.||||=-+
T Consensus 63 ~F~l~l~glG~F~~~~~rv--lWlg~~~~~L~~L~~~l~~~l~~-~~~---r~F~PHITLaR~~~ 121 (149)
T PHA02574 63 TEVASSGHLEVWETQDKNA--LVLVLESEYLQCRHKYARALGAT-HDF---DDYTPHITLSYDVG 121 (149)
T ss_pred CeEEEeccccccCCCCCCE--EEEEeCCHHHHHHHHHHHHHhhc-CCC---CCcCCcEEEeecCC
Confidence 8899999884333 2322 22111222345666677766544 221 35777999999333
No 10
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=60.39 E-value=24 Score=31.08 Aligned_cols=19 Identities=32% Similarity=0.922 Sum_probs=16.2
Q ss_pred EehhhHHHHHHHHHHHHhh
Q 024556 22 TLIWFISFVLFYSFFHMAL 40 (266)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~ 40 (266)
+.+|+++++++|.+|+|.+
T Consensus 60 ivl~Vi~lLvlYM~fL~~l 78 (149)
T PF05434_consen 60 IVLWVIGLLVLYMLFLMCL 78 (149)
T ss_pred EeHHHHHHHHHHHHHHHHH
Confidence 3579999999999999776
No 11
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=59.17 E-value=12 Score=36.25 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=31.7
Q ss_pred eEeecCCCCCCCCCC--hHHHHHHHHHHHHHHhhcCcceEEEeEEEEcCCcceEe
Q 024556 159 SMFHASHHISPVPAT--EDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLG 211 (266)
Q Consensus 159 TvFHaSHh~dPvpat--~~ei~~E~~av~~v~~~~cPi~~~leRVV~tsSGvlL~ 211 (266)
.|||+..+.++.... ++.++-++.-...|-...-=-+ .++|||+|||=+-+.
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv~ 134 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAVR 134 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHhc
Confidence 689998877776654 2345555544444333221122 799999999866554
No 12
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=51.98 E-value=86 Score=28.20 Aligned_cols=100 Identities=18% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHH--hhcCcceEEEeEEEE----cCCcceEeeeeccCCCC--hHH
Q 024556 152 NSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVA--EDLCPLKIVLDRVIL----TSTGVLLGCWQVISGTD--PMT 223 (266)
Q Consensus 152 ~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~--~~~cPi~~~leRVV~----tsSGvlL~cwqv~~gtd--p~~ 223 (266)
.+.-+|+|+ ..|.+-....++.=++.+++.. .+..|+.+.++++-+ -.|-..|++ .|..|.. ...
T Consensus 86 ~~~~lHISL------Sr~~~lr~~~id~f~~~lr~~l~~~~~~~F~v~f~~~~~~~N~e~TR~FL~l-~V~~~~~~~l~~ 158 (239)
T PF09749_consen 86 SPDPLHISL------SRTFPLRTHQIDPFVDSLRQALRSSNIRPFYVSFSGLDVYTNDEKTRSFLAL-RVSEGSNNELKR 158 (239)
T ss_pred CCCCeEEEe------CCCccccHHHHHHHHHHHHHHHhhcCCceEEEEeCceEEEecCCCCeEEEEE-EecccccHHHHH
Confidence 566789988 4566667788888888999998 889999999988543 234455555 7887764 344
Q ss_pred HHHHHHHhCCCCCccCcc-CceeeeehhhhhcCCCC
Q 024556 224 IRAKLRTALPNAPEKQLY-DPAILHTSFARLLGHPR 258 (266)
Q Consensus 224 iR~~LR~alP~AP~kQ~~-d~~IlHTTLaRlL~Pp~ 258 (266)
|=+++-+++-.-=..+.| +.-..|.|+|--++.+.
T Consensus 159 l~~~i~~~l~~~~lp~~Y~~~~~fHvSIAw~~~~~~ 194 (239)
T PF09749_consen 159 LLDRINEVLKEFGLPPFYDEDPSFHVSIAWTLGDPS 194 (239)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCCEEEEEEECCCch
Confidence 444554444444344578 89999999999998775
No 13
>PLN00108 unknown protein; Provisional
Probab=50.44 E-value=1.3e+02 Score=28.58 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CCeEEEEeec--CcccchHHHHHHHHhcC-----CC--------CC-cceeeeCCCcceEeEeecCCCCCCCCCChHHHH
Q 024556 115 PPVRANVLYL--SPKYSVPISDAVKRIFS-----PH--------FD-KVIWFQNSSLYHFSMFHASHHISPVPATEDEIE 178 (266)
Q Consensus 115 vPVRa~Vl~l--p~~~a~~i~~av~~vl~-----p~--------~d-~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~ 178 (266)
+|-=++++|| .+++.+.+.+-=+.++. |. +| ..-+||+|+..|.|+=+-+=. +++|++
T Consensus 35 ~~THFlavPL~~~p~i~~~~~~Fk~~Vl~~~~~~~~~f~~~l~~~gid~siF~~p~~LHLTLgmL~L~------~~eev~ 108 (257)
T PLN00108 35 VFTHFVSLPLAIYPDLKKNIEAFQNSVLGNNDKDPLKFQSTLAEMGIEKSIFVSPKTFHLTVVMLKLE------NNESVV 108 (257)
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHhccccccccccccccccCCCHHHcCCCCceEEEEEEEEcC------CHHHHH
Confidence 3457899999 35565544333333331 11 11 223789999999999888743 334544
Q ss_pred HHHHHHHHHHh------hcCcceEEEeEEEEcC-----CcceEeeeeccC-CC--Ch----HHHHHHHHHhCCCCCccCc
Q 024556 179 AEATAVRAVAE------DLCPLKIVLDRVILTS-----TGVLLGCWQVIS-GT--DP----MTIRAKLRTALPNAPEKQL 240 (266)
Q Consensus 179 ~E~~av~~v~~------~~cPi~~~leRVV~ts-----SGvlL~cwqv~~-gt--dp----~~iR~~LR~alP~AP~kQ~ 240 (266)
.=.+.++++-. .--|+.|.|.=+=.-. +=||-| .|.. ++ .. +.|+.+..++ +-=.++-
T Consensus 109 kA~~~L~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps~~~VLYA--~Ve~~~~~~rLq~~ad~i~~~F~~a--GL~~~d~ 184 (257)
T PLN00108 109 KAQNILKSICSNVRQALKDRPVFIRLRGLDCMNGSLDKTRVLYA--PVEEVGHEGRLLNACHVIIDAFENA--GFAGKDA 184 (257)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEEeehhcCCCcccceEEEE--eccccCchhHHHHHHHHHHHHHHHc--CCccccc
Confidence 44444444422 1278889888765542 445555 4664 22 22 3555666665 1112332
Q ss_pred cCceeeeehhhhhc
Q 024556 241 YDPAILHTSFARLL 254 (266)
Q Consensus 241 ~d~~IlHTTLaRlL 254 (266)
.|++.+|.|++...
T Consensus 185 ~~~vKLH~TlmNt~ 198 (257)
T PLN00108 185 KSRLKLHATLMNAS 198 (257)
T ss_pred CcceeeEeEEechh
Confidence 36899999999875
No 14
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=43.20 E-value=56 Score=28.18 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCCcceeee--CCCcceEeEeec-----------CCCCCC-------CCCChHHHHHHHHHHHHHHhh
Q 024556 131 PISDAVKRIFSPHFDKVIWFQ--NSSLYHFSMFHA-----------SHHISP-------VPATEDEIEAEATAVRAVAED 190 (266)
Q Consensus 131 ~i~~av~~vl~p~~d~~iw~q--~~~~YH~TvFHa-----------SHh~dP-------vpat~~ei~~E~~av~~v~~~ 190 (266)
.+.++..+++.-+.++++|+| ..+.||+=--=. .-|.++ .--++.++...+..+++--..
T Consensus 16 ~~~~aA~~La~Khp~~SvviQlD~~g~~rvv~g~~~~l~g~~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~ 95 (157)
T PF11713_consen 16 IVREAAANLAGKHPDNSVVIQLDIDGEYRVVYGDPSKLQGKVRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQ 95 (157)
T ss_dssp HHHHHHHHHHHHCCCGEEEEECCCTCGEEEEEEEGGGC-SEEEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCCEEEEEeChHHcCCCceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999 235555421111 134444 123688999999888877777
Q ss_pred cCcceEEEeEEEEcCCcceEeeeeccC
Q 024556 191 LCPLKIVLDRVILTSTGVLLGCWQVIS 217 (266)
Q Consensus 191 ~cPi~~~leRVV~tsSGvlL~cwqv~~ 217 (266)
.-++.+.+++| +|++|-....
T Consensus 96 ~~~~~~~P~~I------sLvGC~l~~~ 116 (157)
T PF11713_consen 96 KYGINISPKKI------SLVGCSLADN 116 (157)
T ss_dssp HHTTT--ESEE------EEESSS-S-T
T ss_pred hccCCCCCCEE------EEEEecccCC
Confidence 76777888999 5788854433
No 15
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=39.89 E-value=55 Score=24.01 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=25.7
Q ss_pred EEEeEEEEcCCcceEeeeeccCCCCh---HHHHHHHHHh--CCCCC
Q 024556 196 IVLDRVILTSTGVLLGCWQVISGTDP---MTIRAKLRTA--LPNAP 236 (266)
Q Consensus 196 ~~leRVV~tsSGvlL~cwqv~~gtdp---~~iR~~LR~a--lP~AP 236 (266)
-+.-+|.+.++|.++...-+.+.+++ +.+++.++.+ ||..|
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~~p~p~pP 72 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRASPFPPPP 72 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH-B-GGGG
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHcCCCCcCC
Confidence 45668999999999977644455554 6677777766 66666
No 16
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=36.83 E-value=77 Score=26.54 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHhhcCcceEEEeEEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCc
Q 024556 174 EDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPE 237 (266)
Q Consensus 174 ~~ei~~E~~av~~v~~~~cPi~~~leRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~ 237 (266)
+..+..+.+.|.....-.|-| ||+-+.+|+-|-+ +..-|+.+++++|+.||..=-
T Consensus 43 P~~F~~~c~dIa~~~~~~G~i-----k~~r~~~g~rL~f----S~~ip~~v~QriRNvfP~~~~ 97 (108)
T PF12321_consen 43 PPGFLHNCRDIARRYPFRGTI-----KVYRQRGGVRLHF----SRSIPKKVQQRIRNVFPHQGF 97 (108)
T ss_pred ChHHHHHHHHHHHhCCCcEEE-----EEEEeCCceEEEE----eCCCCHHHhhhhhhcCCCcCc
Confidence 456778877777666556655 5677889998877 577899999999999987644
No 17
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=33.98 E-value=36 Score=33.79 Aligned_cols=48 Identities=31% Similarity=0.574 Sum_probs=35.6
Q ss_pred HhhcCcceEEEeEEEEcCCcceEeeeeccCCCC---hHHHHHHHHHh-CCCCCccCcc
Q 024556 188 AEDLCPLKIVLDRVILTSTGVLLGCWQVISGTD---PMTIRAKLRTA-LPNAPEKQLY 241 (266)
Q Consensus 188 ~~~~cPi~~~leRVV~tsSGvlL~cwqv~~gtd---p~~iR~~LR~a-lP~AP~kQ~~ 241 (266)
.+.+|-|+| =+.+.|+|+.. +..+|.+ -+.||+..|.+ +|.+|...+|
T Consensus 324 ~gK~C~l~i-----kL~pdGtl~~~-~~~~Gd~~lCqAalsAvAk~~kiP~ppsqdVy 375 (387)
T COG3064 324 AGKTCRLRI-----KLAPDGTLLDI-KPEGGDPALCQAALSAVAKTAKIPKPPSQDVY 375 (387)
T ss_pred CCceeEEEE-----EEcCCcceeec-cccCCChHHHHHHHHHHHHhccCCCCCchHHH
Confidence 467898854 57899997766 5665543 26788888877 9999988776
No 18
>PF06519 TolA: TolA C-terminal; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2X9A_D 3QDP_A 3QDR_A 1TOL_A 1S62_A.
Probab=31.67 E-value=33 Score=27.50 Aligned_cols=47 Identities=32% Similarity=0.608 Sum_probs=25.5
Q ss_pred HhhcCcceEEEeEEEEcCCcceEeeeeccCCCChHHHHHHHHH-----hCCCCCccCcc
Q 024556 188 AEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRT-----ALPNAPEKQLY 241 (266)
Q Consensus 188 ~~~~cPi~~~leRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~-----alP~AP~kQ~~ 241 (266)
.++.|=++|. +++.|.|+.- ++.+| |++.=|+.+.. .||-+|.+++|
T Consensus 35 ~GK~C~v~i~-----l~~dG~v~~v-~~~~G-D~~lC~aa~~Ai~k~~~~P~ppd~~vy 86 (96)
T PF06519_consen 35 KGKECRVRIR-----LAPDGLVLSV-TVESG-DPALCRAAKSAIAKAAKFPPPPDPDVY 86 (96)
T ss_dssp TT--EEEEEE-----EETTSEEEEE-EEEEE--HHHHHHHHHH-HCCS-----SSHHHH
T ss_pred CCCEEEEEEE-----ECCCCcEEEe-eecCC-CHHHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 4567887555 6899998876 45555 66555554444 49999988776
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.20 E-value=25 Score=25.90 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhcCcccccccccccccccccccccCC
Q 024556 63 ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKD 103 (266)
Q Consensus 63 ~qRa~LY~~Ma~~l~e~Glaf~~~~ettQ~l~l~DlF~~~d 103 (266)
.+|-.|..++++-|.+.|+++...+-.|.|-...|.|.+.|
T Consensus 8 ~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 8 TDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred CCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 35777999999999999998886666566766788888764
No 20
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=27.33 E-value=1.1e+02 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=16.0
Q ss_pred CcceEEehhhH-HHHHHHHHHHHhhhCCCCC
Q 024556 17 HTKTVTLIWFI-SFVLFYSFFHMALQNSSQN 46 (266)
Q Consensus 17 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~ 46 (266)
.+--++.+|+. ++|+.|.||.+....-+++
T Consensus 35 kysIVI~FWv~LA~FV~~lF~iL~~ms~sgs 65 (90)
T PF15183_consen 35 KYSIVIAFWVSLAAFVVFLFLILLYMSWSGS 65 (90)
T ss_pred ceeeehhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34567778875 4444444444544444443
No 21
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.24 E-value=1.2e+02 Score=29.89 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=41.6
Q ss_pred HHHHHHh--hcCcceEEEeEEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccC------ccCc---eeeeehhh
Q 024556 183 AVRAVAE--DLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQ------LYDP---AILHTSFA 251 (266)
Q Consensus 183 av~~v~~--~~cPi~~~leRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ------~~d~---~IlHTTLa 251 (266)
++|.+|. ++.|++ ++|+|++|++- ..+ .-...+.+||+. ++++ +.+. +++-+..+
T Consensus 257 eVr~vce~lGiDPl~-------~anEG~lv~~V--~~~-~a~~~l~~L~~~----~~~~A~iIGeV~~~~~~v~l~~~~G 322 (339)
T COG0309 257 EVRGVCELLGLDPLE-------LANEGKLVIAV--PPE-HAEEVLEALRSH----GLKDAAIIGEVVEEKGGVGLETAGG 322 (339)
T ss_pred HHHHHHHHhCCCHHH-------hhcCceEEEEE--CHH-HHHHHHHHHHhc----CCccceeEEEEeccCCcEEEEecCC
Confidence 4566676 566774 68999999983 221 123455555554 3232 1232 89999998
Q ss_pred --hhcCCCCCCCC
Q 024556 252 --RLLGHPRASPT 262 (266)
Q Consensus 252 --RlL~Pp~~~~~ 262 (266)
|+|.+|. ++.
T Consensus 323 ~~r~l~~P~-~Dp 334 (339)
T COG0309 323 GKRILEPPE-GDP 334 (339)
T ss_pred ceEecCCCC-cCc
Confidence 9999996 544
Done!