Query 024556
Match_columns 266
No_of_seqs 30 out of 32
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vgj_A Hypothetical protein PH 97.8 7.7E-05 2.6E-09 60.3 9.1 126 119-257 4-135 (184)
2 2vfk_A AKAP18 delta; APO, hydr 97.5 0.00041 1.4E-08 57.2 9.4 130 116-255 2-145 (205)
3 2d4g_A Hypothetical protein BS 97.1 0.001 3.5E-08 53.2 7.0 117 120-255 5-123 (171)
4 1iuh_A 2'-5' RNA ligase; riken 96.7 0.0055 1.9E-07 50.9 8.0 124 120-257 5-140 (198)
5 1jh6_A Cyclic phosphodiesteras 96.6 0.0075 2.6E-07 50.1 8.0 119 114-253 5-125 (189)
6 2fsq_A ATU0111 protein; alpha- 93.2 0.25 8.4E-06 44.3 7.8 155 93-258 25-191 (243)
7 1tol_A G3P - TOLA, protein (fu 23.1 42 0.0014 29.8 2.4 46 196-242 154-202 (222)
8 3me7_A Putative uncharacterize 17.7 2.1E+02 0.0071 22.1 5.2 38 200-238 130-167 (170)
9 3fzy_A RTX toxin RTXA; RTXA to 15.4 1.4E+02 0.0047 26.7 4.0 89 118-216 57-169 (234)
10 2vx8_A Nucleoporin-like protei 14.7 1E+02 0.0034 25.7 2.8 50 199-249 47-98 (169)
No 1
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=97.84 E-value=7.7e-05 Score=60.30 Aligned_cols=126 Identities=11% Similarity=0.106 Sum_probs=86.0
Q ss_pred EEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEE
Q 024556 119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (266)
Q Consensus 119 a~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (266)
++.+++|+++.+.|.+.-+++. +. +..+...+|+.+|+|+..-.. ..++++++=.++++++++..-|+++.+
T Consensus 4 Fial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l 75 (184)
T 1vgj_A 4 FIAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKV 75 (184)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEE
Confidence 3556778877777766666553 22 324555678889999975432 235566666678888888889999999
Q ss_pred eEEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 024556 199 DRVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP 257 (266)
Q Consensus 199 eRVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--P~kQ~~d~~IlHTTLaRlL~Pp 257 (266)
+.+-.=+. +|+-+ .+..+.+...|++++++++... +... +..-|.||||...+.
T Consensus 76 ~g~g~F~~~~~p~vl~~--~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~ 135 (184)
T 1vgj_A 76 KGIGVFPNPNYIRVIWA--GIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK 135 (184)
T ss_dssp EEEEEEECSSSEEEEEE--EEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred eeEeeCCCCCCCcEEEE--EecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence 99876554 23322 2455555688999998887543 2222 678899999987644
No 2
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=97.55 E-value=0.00041 Score=57.23 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=83.6
Q ss_pred CeEEEE-eecCc-ccchHHHHHHHHhcCCCCC-cceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 024556 116 PVRANV-LYLSP-KYSVPISDAVKRIFSPHFD-KVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL- 191 (266)
Q Consensus 116 PVRa~V-l~lp~-~~a~~i~~av~~vl~p~~d-~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~- 191 (266)
+.|+-+ +++|+ ++.+.|.+.-+++..-..+ ..-|+ +++.+|+|+.--.- .+++++++=.+++++++...
T Consensus 2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~ 74 (205)
T 2vfk_A 2 QPNYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMV-GDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE 74 (205)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBC-CTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhC-CcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence 345555 78887 6777776666665421011 12354 57789999964422 23555665566777776655
Q ss_pred -----CcceEEEeEEEEcCCcceEeeeeccCC---CChHHHHHHHHHhCCCCC--ccCccCceeeeehhhhhcC
Q 024556 192 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAP--EKQLYDPAILHTSFARLLG 255 (266)
Q Consensus 192 -----cPi~~~leRVV~tsSGvlL~cwqv~~g---tdp~~iR~~LR~alP~AP--~kQ~~d~~IlHTTLaRlL~ 255 (266)
-|+++.++.+-.=+.+||-+. +..+ .....|+++++++|..+- .++ ..+..-|.||||.-.
T Consensus 75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~-~~~f~PHiTlar~~~ 145 (205)
T 2vfk_A 75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGE-SRTFKPHLTFMKLSK 145 (205)
T ss_dssp HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCC-SSCCCCCEEEEEGGG
T ss_pred HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCC-CCCcceEEEEEeccc
Confidence 899999999977766655333 4333 246888888888865432 111 256889999999874
No 3
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=97.14 E-value=0.001 Score=53.17 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 199 (266)
Q Consensus 120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le 199 (266)
+.+.+|+++.+.|.+.-+++ .+ ..-|+.+ |+|+..-.. ..++++++=.+++++++++.-|+++.++
T Consensus 5 iai~~~~~~~~~l~~~~~~~-~~---~~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~ 70 (171)
T 2d4g_A 5 IVLFPSKKLQDLANSYRKRY-DP---SYSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKMT 70 (171)
T ss_dssp EEBCCCHHHHHHHHHHHHHH-CG---GGGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHh-Cc---ccCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEEC
Confidence 45677777777776665554 33 1226544 999975432 1234455556788888889999999999
Q ss_pred EEEEcCCc--ceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcC
Q 024556 200 RVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255 (266)
Q Consensus 200 RVV~tsSG--vlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~ 255 (266)
++-.=+.+ |+.+ .+....+...|++++++++...+.+ .+..-|-||||...
T Consensus 71 ~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTLar~~~ 123 (171)
T 2d4g_A 71 KYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQE---YNFVPHVTVGQNLS 123 (171)
T ss_dssp EEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCC---SCCCCEEEEECSCC
T ss_pred CcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccC---CCCCCeEEeecCCC
Confidence 99776533 4433 2444446799999999998765433 35788999999764
No 4
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=96.68 E-value=0.0055 Score=50.90 Aligned_cols=124 Identities=14% Similarity=0.183 Sum_probs=78.5
Q ss_pred EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 199 (266)
Q Consensus 120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le 199 (266)
+.+.+|+++.+.|.+.-+++- ...+ .=|+. ++.+|+|+..-.. ..++++++=.+++++++++.-|+++.++
T Consensus 5 ial~~p~~~~~~l~~~~~~l~-~~~~-~r~v~-~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l~ 75 (198)
T 1iuh_A 5 YAVFLPEEVRAALVEAQTKVR-PFRG-WKPVP-PHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARLR 75 (198)
T ss_dssp EEEECCHHHHHHHHHHHGGGT-TCTT-EEECC-GGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHhh-hhcC-CcccC-CCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEEc
Confidence 456777777777755554442 2111 22654 7779999964321 2234566556788888888999999999
Q ss_pred EEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCC
Q 024556 200 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHP 257 (266)
Q Consensus 200 RVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--------P~kQ~~d~~IlHTTLaRlL~Pp 257 (266)
.+-.=+. +|+-+ .+ ...+...|++++++++... +... .+..=|.||||...+.
T Consensus 76 g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~--~~f~PHiTLar~~~~~ 140 (198)
T 1iuh_A 76 GTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPA 140 (198)
T ss_dssp EEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCC
T ss_pred ceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC--CCCCCcEEeEeccCcc
Confidence 9977665 34422 23 3335677777777665432 1111 3578899999998644
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=96.56 E-value=0.0075 Score=50.10 Aligned_cols=119 Identities=12% Similarity=0.062 Sum_probs=78.0
Q ss_pred CCCeEEEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCc
Q 024556 114 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCP 193 (266)
Q Consensus 114 ~vPVRa~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cP 193 (266)
+...|++++..|+++.+.+.+..+++-. .. |. ++..+|+|+ +.+++...+ .=.+++++++++.-|
T Consensus 5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~-~~----~~-~~~~~HiTL------lG~~~~~~~---~l~~~L~~~a~~~~p 69 (189)
T 1jh6_A 5 KKDVYSVWALPDEESEPRFKKLMEALRS-EF----TG-PRFVPHVTV------AVSAYLTAD---EAKKMFESACDGLKA 69 (189)
T ss_dssp CCEEEEEEEEECTTTHHHHHHHHHHHHH-HH----TC-CCCCCCEEE------EEEEEECHH---HHHHHHHHHHHTCBC
T ss_pred CCCcEEEEEECCHHHHHHHHHHHHHHHH-Hc----CC-CCCCCEEEE------eCCCCCCHH---HHHHHHHHHHhhCCC
Confidence 3446777776688777777766655521 11 22 678999999 334433333 345677788888899
Q ss_pred ceEEEeEEEE--cCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 024556 194 LKIVLDRVIL--TSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL 253 (266)
Q Consensus 194 i~~~leRVV~--tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRl 253 (266)
+.+.++.|=. ..-.||-+. |..+.+...|.+++++++...|.+ +..=|.||||.
T Consensus 70 f~l~l~g~g~~~~~~rvlw~~--v~~~~~L~~L~~~v~~~~g~~~~~----~f~PHlTLar~ 125 (189)
T 1jh6_A 70 YTATVDRVSTGTFFFQCVFLL--LQTTPEVMEAGEHCKNHFNCSTTT----PYMPHLSLLYA 125 (189)
T ss_dssp EEEEEEEEEEEEETTEEEEEE--ECCCHHHHHHHHHHHHHTTCCCCS----CCCCEEEEECC
T ss_pred eEEEEcceeccCccceEEEEe--ecCCHHHHHHHHHHHHHhCCCCCC----CCCCeEEEEEe
Confidence 9999999865 112232222 334445688999999997665543 57889999985
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=93.25 E-value=0.25 Score=44.33 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=83.4
Q ss_pred cccccccccCCCceecccccCCCCeEEEEeecCccc--chHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCC--
Q 024556 93 LLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKY--SVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS-- 168 (266)
Q Consensus 93 l~l~DlF~~~dG~v~P~l~~~~vPVRa~Vl~lp~~~--a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~d-- 168 (266)
..++..|+- ||...|- |===+|-|++... ...+.++-+++..-.+.+..=+.++++||.|+|----..+
T Consensus 25 ~~~g~Kf~~-~G~~~pF------pGnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~ 97 (243)
T 2fsq_A 25 RHLGSRFSA-EGEFLPE------PGNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRA 97 (243)
T ss_dssp TTBTTTBCT-TSCBCCC------CEEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCS
T ss_pred cccccCCCC-CCCEecC------CCCeEEEecCCCChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhcccccccccc
Confidence 344556653 7755553 2223455666522 2333222222221112344557799999999997432222
Q ss_pred --CCCC---ChHHHHHHHHHHH-HHH--hhcCcceEEEeEEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCc
Q 024556 169 --PVPA---TEDEIEAEATAVR-AVA--EDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 240 (266)
Q Consensus 169 --Pvpa---t~~ei~~E~~av~-~v~--~~~cPi~~~leRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~ 240 (266)
.=|+ .+..+..--+.+. ++. ....|+++.+.-+ .++|+.|.-..-..-.-...+|++|.+++.---+.|
T Consensus 98 ~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~h- 174 (243)
T 2fsq_A 98 LPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHPDH- 174 (243)
T ss_dssp TTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTG-
T ss_pred CCCCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCCCC-
Confidence 1111 1222332222222 221 2346888888877 455655443211111225699999999887655545
Q ss_pred cCceeeeehhhhhcCCCC
Q 024556 241 YDPAILHTSFARLLGHPR 258 (266)
Q Consensus 241 ~d~~IlHTTLaRlL~Pp~ 258 (266)
|..-.|-|||=++.++.
T Consensus 175 -d~y~fHITLgY~~~~l~ 191 (243)
T 2fsq_A 175 -DTYEFHITLSYIVSWFE 191 (243)
T ss_dssp -GGCCEEEECEEESSCBC
T ss_pred -cceEEEEEEEeccCCCC
Confidence 78999999999887654
No 7
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=23.12 E-value=42 Score=29.83 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=30.0
Q ss_pred EEEeEEEEcCCcceEeeeeccCCCC---hHHHHHHHHHhCCCCCccCccC
Q 024556 196 IVLDRVILTSTGVLLGCWQVISGTD---PMTIRAKLRTALPNAPEKQLYD 242 (266)
Q Consensus 196 ~~leRVV~tsSGvlL~cwqv~~gtd---p~~iR~~LR~alP~AP~kQ~~d 242 (266)
.+.-||.|.++|.|+.. ++.+|.. -+.+|+..|..||..|..++|+
T Consensus 154 ~v~Vrf~L~pdG~Vlsv-~V~SGd~aLD~AAl~AVrrApfP~PP~~~vye 202 (222)
T 1tol_A 154 TCTLRIKLAPDGMLLDI-KPEGGDPALCQAALAAAKLAKIPKPPSQAVYE 202 (222)
T ss_dssp CEEEEEEECTTSCEEEE-EEEEECHHHHHHHHHHHHHCCCCCCSCHHHHH
T ss_pred EEEEEEEECCCCCEEEE-EecCCCHHHHHHHHHHHHhCCCCcCCchHHHH
Confidence 35668899999999998 5665542 2444544444477777655554
No 8
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=17.73 E-value=2.1e+02 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=29.6
Q ss_pred EEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCcc
Q 024556 200 RVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEK 238 (266)
Q Consensus 200 RVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~k 238 (266)
-+|+.+.|.+..-| .-...++++|++.|+++.-.++-+
T Consensus 130 ~~lID~~G~i~~~~-~g~~~~~~~i~~~l~~~~~~~~~~ 167 (170)
T 3me7_A 130 VVVLSPELQIKDYI-YGVNYNYLEFVNALRLARGEGHHH 167 (170)
T ss_dssp EEEECTTSBEEEEE-ESSSCCHHHHHHHHHHHTTCSCTT
T ss_pred EEEECCCCeEEEEE-eCCCCCHHHHHHHHHHhhcccccc
Confidence 47899999999887 333458999999999997665543
No 9
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain, PRE-cleavage form IDP00167, structural genomics; HET: IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Probab=15.39 E-value=1.4e+02 Score=26.73 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=56.9
Q ss_pred EEEEeecCcccchHHHHHHHHhcCCCCCcceeee--CCCcceEeEeecC-------------CCCCCCC---------CC
Q 024556 118 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQ--NSSLYHFSMFHAS-------------HHISPVP---------AT 173 (266)
Q Consensus 118 Ra~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q--~~~~YH~TvFHaS-------------Hh~dPvp---------at 173 (266)
.=+|++|-.+ ..+.+|..+++.-+.+++|++| ..+.|++ ++.+ -|....- -+
T Consensus 57 ~qiIIQLe~D--~~v~~AA~~La~KHP~~SvlvQlD~~g~yrv--vyGd~~~L~GklRWqlVGHG~~~~~~~~~tlaG~s 132 (234)
T 3fzy_A 57 GQIIVQMEND--PVVAKAAANLAGKHAESSVVVQLDSDGNYRV--VYGDPSKLDGKLRWQLVGHGRDHSETNNTRLSGYS 132 (234)
T ss_dssp EEEEEECSCC--HHHHHHHHHHHHHTGGGEEEEEECTTSCEEE--EESCGGGCCSSEEEEEECCEESCCTTSCCEETTBC
T ss_pred ceEEEEECCC--HHHHHHHHHHHhhCCCCcEEEEEeCCCCEEE--EeCChHHcCCceEEEEEeCCCCcCCCcccccCCCC
Confidence 4566677432 2577889999999899999999 4455654 3332 1222211 16
Q ss_pred hHHHHHHHHHHHHHHhhcCcceEEEeEEEEcCCcceEeeeecc
Q 024556 174 EDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVI 216 (266)
Q Consensus 174 ~~ei~~E~~av~~v~~~~cPi~~~leRVV~tsSGvlL~cwqv~ 216 (266)
++++...+..+++-....--+...+++|+ |+||-.+.
T Consensus 133 a~~LA~~L~~~~~~l~~~~~i~~~P~~Is------LvGCsL~~ 169 (234)
T 3fzy_A 133 ADELAVKLAKFQQSFNQAENINNKPDHIS------IVGSSLVS 169 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSEEE------EESSSCSC
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCEEE------EEEecCcC
Confidence 88899998888776654333455566663 57886444
No 10
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=14.68 E-value=1e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=30.0
Q ss_pred eEEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCcc--Cceeeeeh
Q 024556 199 DRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLY--DPAILHTS 249 (266)
Q Consensus 199 eRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~--d~~IlHTT 249 (266)
-=.+++-.|++|+.++-..|.=...+|.-|+. +|..+.|+.| |...+|-.
T Consensus 47 lYa~VaRG~~VLae~t~~~gnf~~iak~ll~k-l~~~~~r~s~~~~~y~fHyl 98 (169)
T 2vx8_A 47 LFAVVARGTTILAKHAWCGGNFLEVTEQILAK-IPSENNKLTYSHGNYLFHYI 98 (169)
T ss_dssp CEEEEEETTEEEEEEESSCBSHHHHHHHHHTT-SCSSCEEEEEEETTEEEEEE
T ss_pred EEEEEEcCCEEEEEeccCCCCHHHHHHHHHhh-CCCCCCceEEEECCEEEEEE
Confidence 33456778999998865444323444444444 4444566655 88888854
Done!