Query 024556
Match_columns 266
No_of_seqs 30 out of 32
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 10:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024556.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024556hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iuha_ d.61.1.2 (A:) 2'-5' RN 96.6 0.0029 2.1E-07 49.4 7.5 127 121-258 6-141 (183)
2 d1jh6a_ d.61.1.1 (A:) tRNA spl 95.1 0.089 6.5E-06 40.7 10.1 113 122-253 13-125 (181)
3 d2fsqa1 d.61.1.4 (A:6-237) Put 94.5 0.047 3.4E-06 46.5 7.7 130 120-258 38-184 (232)
4 d1sfea2 c.55.7.1 (A:12-92) Ada 24.9 42 0.003 22.2 4.1 47 201-253 17-63 (81)
5 d1kxpd3 a.126.1.1 (D:405-473) 22.9 5.7 0.00041 28.1 -0.9 30 222-251 16-45 (69)
6 d1mkfa_ b.116.1.1 (A:) Viral c 21.8 9.2 0.00067 33.5 0.1 49 150-213 299-355 (371)
7 d1tola2 d.212.1.1 (A:125-216) 19.2 25 0.0018 24.5 2.0 43 197-241 31-77 (92)
8 d1p5va2 b.7.2.1 (A:148-233) Ca 15.0 33 0.0024 23.5 1.8 20 145-164 17-36 (86)
9 d2j2za2 b.7.2.1 (A:125-217) Pa 14.1 36 0.0026 23.9 1.8 20 145-164 14-33 (93)
10 d1gtra2 c.26.1.1 (A:8-338) Glu 12.5 44 0.0032 27.9 2.1 25 61-85 91-115 (331)
No 1
>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}
Probab=96.59 E-value=0.0029 Score=49.43 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=75.3
Q ss_pred EeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 024556 121 VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR 200 (266)
Q Consensus 121 Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leR 200 (266)
-+++|++..+.|.+.-++ +.+.. +.=|+ +++.||+|+.-- -..++++++.=.+++++++....|+.+.+++
T Consensus 6 al~~p~~~~~~l~~~~~~-l~~~~-~~r~~-~~~~lHiTL~fl------g~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~ 76 (183)
T d1iuha_ 6 AVFLPEEVRAALVEAQTK-VRPFR-GWKPV-PPHQLHLTLLFL------GERPEEELPDYLALGHRLARLEAPFRARLRG 76 (183)
T ss_dssp EEECCHHHHHHHHHHHGG-GTTCT-TEEEC-CGGGCEEEEEEE------EECCGGGHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred EEcCCHHHHHHHHHHHHH-ccccc-ccccC-CcccCEEEEEcC------CCCCHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 356677666666444444 32322 22265 678899999521 1234566777778999999999999999999
Q ss_pred EEEcCCcc-eEeeeeccCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCCC
Q 024556 201 VILTSTGV-LLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHPR 258 (266)
Q Consensus 201 VV~tsSGv-lL~cwqv~~gtdp~~iR~~LR~alP~A--------P~kQ~~d~~IlHTTLaRlL~Pp~ 258 (266)
+-.=+.+. -...|.+..+.+...+..+|++++..+ |+.. .+..=|-||||.-.+++
T Consensus 77 ~~~f~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~--r~f~PHITlar~~~~~~ 141 (183)
T d1iuha_ 77 TGYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPAP 141 (183)
T ss_dssp EEEESSSSSCSEEEEEEECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCCC
T ss_pred cccCCCCCCcEEEEEecCChHHHHHHHHHHHHHHHHhhhhccCCCccC--CCcCCCEEEEeEcCCch
Confidence 97655442 222333344434444444444443322 2111 24666889999866554
No 2
>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.07 E-value=0.089 Score=40.68 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=72.3
Q ss_pred eecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEE
Q 024556 122 LYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRV 201 (266)
Q Consensus 122 l~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leRV 201 (266)
+-.|++...+|.++++++-.. +++. ++ +| |+|+.--.. .+++ ...+.++.++...-|+.+.+++|
T Consensus 13 l~P~~~~~~~l~~l~~~l~~~-~~~~-~~-~p---HiTL~~~~~------~~~~---~~~~~l~~~~~~~~p~~~~~~~~ 77 (181)
T d1jh6a_ 13 ALPDEESEPRFKKLMEALRSE-FTGP-RF-VP---HVTVAVSAY------LTAD---EAKKMFESACDGLKAYTATVDRV 77 (181)
T ss_dssp EEECTTTHHHHHHHHHHHHHH-HTCC-CC-CC---CEEEEEEEE------ECHH---HHHHHHHHHHHTCBCEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHh-hCCC-CC-CC---eEEEeecCc------CCHH---HHHHHHHHHHhhCCCeEEEeccc
Confidence 333555666666666555211 1111 22 23 999965321 1222 33455667777788999999999
Q ss_pred EEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 024556 202 ILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL 253 (266)
Q Consensus 202 V~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRl 253 (266)
..-..+--...+.+....+...+++++++.+.....+. ..=|.||||.
T Consensus 78 ~~~~~~~~~v~~~~~~~~~L~~l~~~l~~~~~~~~~~~----f~PHiTLa~~ 125 (181)
T d1jh6a_ 78 STGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTP----YMPHLSLLYA 125 (181)
T ss_dssp EEEEETTEEEEEEECCCHHHHHHHHHHHHHTTCCCCSC----CCCEEEEECC
T ss_pred ccCCCCceEEEEccCCCHHHHHHHHHHHHhcCcccCCC----CCCeEEEEec
Confidence 87666655556667665677999999999987665554 5568899974
No 3
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=94.50 E-value=0.047 Score=46.46 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=69.2
Q ss_pred EEeecCcc--cchHHHHHHHHhcCCCC-CcceeeeCCCcceEeEeecC--------C-CCCC-CCCChHHHHHHHHHHHH
Q 024556 120 NVLYLSPK--YSVPISDAVKRIFSPHF-DKVIWFQNSSLYHFSMFHAS--------H-HISP-VPATEDEIEAEATAVRA 186 (266)
Q Consensus 120 ~Vl~lp~~--~a~~i~~av~~vl~p~~-d~~iw~q~~~~YH~TvFHaS--------H-h~dP-vpat~~ei~~E~~av~~ 186 (266)
+|-+++++ +...|.++ ++-+.-.. .+..-+-+|++||.|+|=-- + +.+. .-..-+++..+..+ +
T Consensus 38 iI~~i~~~s~~~~~l~~~-q~~l~~~~~~~~~~~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~~~~~~~~~~--r 114 (232)
T d2fsqa1 38 VVCHLVEGSQTESAIVST-RQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRD--R 114 (232)
T ss_dssp EEEEBCTTSHHHHHHHHH-HHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHH--H
T ss_pred EEEecCCCchHHHHHHHH-HHHHHhcCcccceeeCChhhhhHHHhcccccccccCCCCCccCCcccCHHHHHHHHHH--H
Confidence 44566653 22344333 33333333 34445679999999999321 1 1111 22234455555433 3
Q ss_pred HHhh--cCcceEEEeEEEEcCCcceEeeeeccCCC--ChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCCC
Q 024556 187 VAED--LCPLKIVLDRVILTSTGVLLGCWQVISGT--DPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR 258 (266)
Q Consensus 187 v~~~--~cPi~~~leRVV~tsSGvlL~cwqv~~gt--dp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~Pp~ 258 (266)
+-.- ..++++.+.. +.+.|++|.- +.... -...+|++|.+.+.-..+.+ |+...|-|||=+++...
T Consensus 115 l~~~~~~~~~~~~~~~--~~~~~v~L~p--~~e~d~~~L~~~R~~l~~l~gi~~~~h--~~Y~fHITLaY~l~~l~ 184 (232)
T d2fsqa1 115 LSTFPTLPAFNMRVTG--LRPVGMVMKG--ATAEDDSIVALWRDTFADFFGYRHPDH--DTYEFHITLSYIVSWFE 184 (232)
T ss_dssp GGGCCCCCCCCEEEEE--EETTEEEEEE--SSHHHHHHHHHHHHHHHHHHTCCCTTG--GGCCEEEECEEESSCBC
T ss_pred HhcCCCCcceEEEEec--ccccEEEEec--CCHHHHHHHHHHHHHHHHHhccCCCCC--ceeEEEEEEEeccCCCC
Confidence 3332 3345554432 2233333222 11111 14668889999887776666 78999999999987543
No 4
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=24.92 E-value=42 Score=22.15 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=30.6
Q ss_pred EEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 024556 201 VILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL 253 (266)
Q Consensus 201 VV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRl 253 (266)
|..|+-|+....| +.+++.+...|++.||+|.-.. |...++.-...|
T Consensus 17 vaat~~Glc~i~F----~d~~~~~~~~l~~~~p~a~l~~--~~~~l~~~~~ql 63 (81)
T d1sfea2 17 VAESERGICAILL----GDDDATLISELQQMFPAADNAP--ADLMFQQHVREV 63 (81)
T ss_dssp EEECSSSEEEEEE----ESCHHHHHHHHHHHSTTCEECT--TCHHHHHHHHHH
T ss_pred EEEcCCcEEEEEE----ecChHHHHHHHHHhhccceeec--ccchhHHHHHHH
Confidence 4456667655554 4578899999999999986543 445555444443
No 5
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.89 E-value=5.7 Score=28.11 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCccCccCceeeeehhh
Q 024556 222 MTIRAKLRTALPNAPEKQLYDPAILHTSFA 251 (266)
Q Consensus 222 ~~iR~~LR~alP~AP~kQ~~d~~IlHTTLa 251 (266)
..|+.+||..+|+|.++|+.|-+==|+.||
T Consensus 16 kkL~e~lr~k~P~as~~~l~~mVekrsdfA 45 (69)
T d1kxpd3 16 KKLAERLKAKLPDATPKELAKLVNKRSDFA 45 (69)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHhHHH
Confidence 568889999999999988755555566665
No 6
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}
Probab=21.76 E-value=9.2 Score=33.54 Aligned_cols=49 Identities=31% Similarity=0.421 Sum_probs=31.9
Q ss_pred eeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe--------EEEEcCCcceEeee
Q 024556 150 FQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD--------RVILTSTGVLLGCW 213 (266)
Q Consensus 150 ~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le--------RVV~tsSGvlL~cw 213 (266)
=|.|.+||+-+|.+||-..=--.+.+ -||+++++- ||+-|+--.++|.-
T Consensus 299 ~~s~~L~~C~~~mtsH~G~~~~~~s~---------------QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvs 355 (371)
T d1mkfa_ 299 RPSSKLYHCALQMTSHDGVWTSTSSE---------------QCPIRLVEGQSQNVLQVRVAPTSMPNLVGVS 355 (371)
T ss_dssp SCCCCEEEEEEEEEEETTEEEECCCS---------------SCCEEEEECSSTTEEEEEECGGGGGGEEEEE
T ss_pred CCCCcceEEEEEEEeccCceeeeecc---------------cCceeEeecCceeEEEEEEccccCcceeeEE
Confidence 46888999999999997643332222 199987653 45445555555553
No 7
>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}
Probab=19.24 E-value=25 Score=24.51 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=27.8
Q ss_pred EEeEEEEcCCcceEeeeeccCCCCh---HHHHHHHHHh-CCCCCccCcc
Q 024556 197 VLDRVILTSTGVLLGCWQVISGTDP---MTIRAKLRTA-LPNAPEKQLY 241 (266)
Q Consensus 197 ~leRVV~tsSGvlL~cwqv~~gtdp---~~iR~~LR~a-lP~AP~kQ~~ 241 (266)
..-+|-+.++|.|+... +.+|... +.+| ++|.+ ||-.|...+|
T Consensus 31 ~~v~i~l~~~G~v~~v~-~sSG~~~fd~sa~~-Air~~~~p~~p~~~~~ 77 (92)
T d1tola2 31 CTLRIKLAPDGMLLDIK-PEGGDPALCQAALA-AAKLAKIPKPPSQAVY 77 (92)
T ss_dssp EEEEEEECTTSCEEEEE-EEEECHHHHHHHHH-HHHHCCCCCCSCHHHH
T ss_pred EEEEEEEeCCccEEEeE-ecCCCHHHHHHHHH-HHHhCCCCCCCchhHh
Confidence 44678899999999875 5555422 3333 33555 8888776554
No 8
>d1p5va2 b.7.2.1 (A:148-233) Caf1m {Yersinia pestis [TaxId: 632]}
Probab=14.98 E-value=33 Score=23.54 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=18.1
Q ss_pred CcceeeeCCCcceEeEeecC
Q 024556 145 DKVIWFQNSSLYHFSMFHAS 164 (266)
Q Consensus 145 d~~iw~q~~~~YH~TvFHaS 164 (266)
++.+.+.||.-||+|+-.-.
T Consensus 17 g~~l~v~NpTPyyvt~~~l~ 36 (86)
T d1p5va2 17 GGKLIAENPSPFYMNIGELT 36 (86)
T ss_dssp TTEEEEEECSSSCEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEEEE
Confidence 78899999999999999865
No 9
>d2j2za2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}
Probab=14.11 E-value=36 Score=23.86 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=17.1
Q ss_pred CcceeeeCCCcceEeEeecC
Q 024556 145 DKVIWFQNSSLYHFSMFHAS 164 (266)
Q Consensus 145 d~~iw~q~~~~YH~TvFHaS 164 (266)
|+.+-+.||.-||+|+-..+
T Consensus 14 g~~l~v~NpTPYyvt~~~i~ 33 (93)
T d2j2za2 14 SGGYRIENPTPYYVTVIGLG 33 (93)
T ss_dssp TTEEEEEECSSSCEEEEEEE
T ss_pred CCEEEEECCCccEEEeeeEE
Confidence 67888999999999997654
No 10
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=12.48 E-value=44 Score=27.94 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhhhhhcCccccc
Q 024556 61 NGERRARLYDKMARDLDDHGAAFLK 85 (266)
Q Consensus 61 ~~~qRa~LY~~Ma~~l~e~Glaf~~ 85 (266)
+.++|-..|.+++.+|.+.|+++.+
T Consensus 91 ~QS~r~~~Y~~~~~~L~~~G~aY~C 115 (331)
T d1gtra2 91 YSSDYFDQLHAYAIELINKGLAYVD 115 (331)
T ss_dssp EGGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ecchHHHHHHHHHHhhhhcCCcccc
Confidence 4567899999999999999999886
Done!