BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024559
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 147/197 (74%), Gaps = 9/197 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 249 FWSMRPDATLDPSSLHG 265
F+S++PD + DP+SLHG
Sbjct: 192 FYSLKPDGSNDPASLHG 208
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 147/197 (74%), Gaps = 9/197 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 128 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 183
Query: 249 FWSMRPDATLDPSSLHG 265
F+S++PD + DP+SLHG
Sbjct: 184 FYSLKPDGSNDPASLHG 200
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 147/197 (74%), Gaps = 9/197 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 127 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 182
Query: 249 FWSMRPDATLDPSSLHG 265
F+S++PD + DP+SLHG
Sbjct: 183 FYSLKPDGSNDPASLHG 199
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 143/197 (72%), Gaps = 9/197 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P VKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T L YL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL
Sbjct: 136 EHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALX 191
Query: 249 FWSMRPDATLDPSSLHG 265
F+S++PD + DP+SLHG
Sbjct: 192 FYSLKPDGSNDPASLHG 208
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 102/184 (55%), Gaps = 28/184 (15%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKD-SRVRTSSGTFLKRGQDR 141
EP V N LS EC+ LI+L+K + +S K G S+D + +RTSSG FL +
Sbjct: 38 EPLIVVLGNVLSDEECDELIELSKSKLARS-----KVGSSRDVNDIRTSSGAFLD--DNE 90
Query: 142 IIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMY 201
+ IEKRI+ +P HGEG+ +L+YEV Q+Y AHYDYF E + R++TL+ Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA-EHSRSAANNRISTLVXY 149
Query: 202 LSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPS 261
L+DVEEGGET FP N LSV P++G A+ F D +L+
Sbjct: 150 LNDVEEGGETFFPKLN-------------------LSVHPRKGXAVYFEYFYQDQSLNEL 190
Query: 262 SLHG 265
+LHG
Sbjct: 191 TLHG 194
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 225 WWNELSECGKQGLSVKPKRGDAL 247
+WN++S+CG++ +VKP + D +
Sbjct: 84 FWNDISQCGRRDCAVKPAQSDEV 106
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 225 WWNELSECGKQGLSVKPKRGDAL 247
+WN++S+CG++ +VKP + D +
Sbjct: 84 FWNDISQCGRRDAAVKPAQSDEV 106
>pdb|2CXA|A Chain A, Crystal Structure Of LeucylPHENYLALANYL-Trna Protein
Transferase From Escherichia Coli
Length = 256
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 244 GDALLFWSMRPDATLDPSSLH 264
GD +L+WS P A L P SLH
Sbjct: 70 GDPILWWSPDPRAVLWPESLH 90
>pdb|2Z3L|A Chain A, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3L|B Chain B, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3N|A Chain A, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3N|B Chain B, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3K|A Chain A, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3K|B Chain B, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3M|A Chain A, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3M|B Chain B, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3O|A Chain A, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3O|B Chain B, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3P|A Chain A, Complex Structure Of Lf-Transferase And Leucine
pdb|2Z3P|B Chain B, Complex Structure Of Lf-Transferase And Leucine
Length = 233
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 244 GDALLFWSMRPDATLDPSSLH 264
GD +L+WS P A L P SLH
Sbjct: 52 GDPILWWSPDPRAVLWPESLH 72
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 46 DDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIV 80
DD++ N + + RR +F+ +++ E + ++W ++V
Sbjct: 85 DDEAKTNQIFARRRLSFDCTATLIERESQKWNQVV 119
>pdb|2DPS|A Chain A, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPS|B Chain B, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPT|A Chain A, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
pdb|2DPT|B Chain B, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
Length = 254
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 244 GDALLFWSMRPDATLDPSSLH 264
GD +L+WS P A L P SLH
Sbjct: 73 GDPILWWSPDPRAVLWPESLH 93
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 223 VRWWNELSECGKQGLSVKP 241
++WW +L+ G +G+ VKP
Sbjct: 314 IKWWEDLTASGGEGMVVKP 332
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 223 VRWWNELSECGKQGLSVKP 241
++WW +L+ G +G+ VKP
Sbjct: 300 IKWWEDLTASGGEGMVVKP 318
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 223 VRWWNELSECGKQGLSVKP 241
++WW +L+ G +G+ VKP
Sbjct: 300 IKWWEDLTASGGEGMVVKP 318
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 223 VRWWNELSECGKQGLSVKP 241
++WW +L+ G +G+ VKP
Sbjct: 280 IKWWEDLTASGGEGMVVKP 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,924,548
Number of Sequences: 62578
Number of extensions: 319719
Number of successful extensions: 646
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 15
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)