Query 024559
Match_columns 266
No_of_seqs 220 out of 1157
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.3E-53 2.9E-58 392.0 20.9 195 71-266 41-235 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 7.1E-47 1.5E-51 343.8 16.3 242 8-266 10-267 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 5.7E-31 1.2E-35 223.7 16.0 158 84-266 1-162 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.9 3.2E-21 6.9E-26 170.5 13.5 142 86-252 2-156 (226)
5 PHA02813 hypothetical protein; 99.5 8.1E-14 1.7E-18 128.7 11.3 136 96-256 23-165 (354)
6 PHA02869 C4L/C10L-like gene fa 99.5 1.4E-13 3.1E-18 128.8 9.5 121 109-256 45-174 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.2 1.9E-11 4.2E-16 94.0 5.0 73 164-251 1-76 (100)
8 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.6 5E-08 1.1E-12 71.0 4.7 53 160-216 9-65 (70)
9 COG3128 PiuC Uncharacterized i 98.6 2.1E-07 4.6E-12 79.6 8.0 143 85-252 3-159 (229)
10 TIGR02408 ectoine_ThpD ectoine 98.0 9.1E-05 2E-09 67.5 11.4 127 86-215 30-167 (277)
11 PF05721 PhyH: Phytanoyl-CoA d 98.0 4.8E-05 1E-09 64.1 9.0 157 86-252 6-195 (211)
12 KOG3710 EGL-Nine (EGLN) protei 97.9 0.00015 3.2E-09 64.2 11.4 142 85-255 54-219 (280)
13 PF03336 Pox_C4_C10: Poxvirus 97.5 0.00029 6.3E-09 65.6 7.8 88 123-214 36-127 (339)
14 PHA02866 Hypothetical protein; 97.2 0.0008 1.7E-08 61.6 6.2 96 109-215 32-130 (333)
15 TIGR01762 chlorin-enz chlorina 97.0 0.018 3.9E-07 53.0 13.3 121 86-213 16-152 (288)
16 COG3751 EGL-9 Predicted prolin 96.9 0.009 1.9E-07 53.9 9.8 74 163-252 137-214 (252)
17 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.5 0.0011 2.4E-08 50.4 1.5 73 162-265 2-80 (98)
18 PF13759 2OG-FeII_Oxy_5: Putat 96.3 0.01 2.2E-07 45.7 5.8 78 167-255 5-84 (101)
19 TIGR02466 conserved hypothetic 95.0 0.087 1.9E-06 46.1 7.0 82 164-256 98-181 (201)
20 PF13532 2OG-FeII_Oxy_2: 2OG-F 94.7 0.43 9.3E-06 40.4 10.5 138 86-250 2-161 (194)
21 PF09859 Oxygenase-NA: Oxygena 92.7 0.15 3.3E-06 43.2 3.9 73 163-254 63-139 (173)
22 PRK15401 alpha-ketoglutarate-d 89.3 8.7 0.00019 34.0 11.9 138 82-249 16-179 (213)
23 KOG3200 Uncharacterized conser 87.8 2.2 4.7E-05 36.8 6.8 97 79-182 7-108 (224)
24 COG5285 Protein involved in bi 78.7 3.6 7.8E-05 38.1 4.8 72 174-250 132-206 (299)
25 PHA02923 hypothetical protein; 78.6 7.1 0.00015 36.2 6.7 67 140-218 43-111 (315)
26 TIGR00568 alkb DNA alkylation 72.0 34 0.00074 29.0 8.8 85 141-249 74-158 (169)
27 PF03579 SHP: Small hydrophobi 70.1 8.4 0.00018 27.0 3.8 30 11-40 12-41 (64)
28 KOG3959 2-Oxoglutarate- and ir 68.6 6.8 0.00015 35.3 3.9 92 84-183 72-175 (306)
29 PF13677 MotB_plug: Membrane M 66.9 12 0.00027 25.9 4.2 27 1-27 1-27 (58)
30 KOG3844 Predicted component of 66.3 26 0.00057 33.9 7.5 119 78-215 29-165 (476)
31 PLN03001 oxidoreductase, 2OG-F 62.5 29 0.00063 31.4 6.9 49 141-201 87-149 (262)
32 PLN02485 oxidoreductase 60.4 25 0.00055 32.7 6.3 23 84-106 46-68 (329)
33 PLN02984 oxidoreductase, 2OG-F 59.0 41 0.00089 31.7 7.5 23 84-106 60-82 (341)
34 PF06822 DUF1235: Protein of u 58.9 42 0.00091 30.7 7.2 82 140-251 32-114 (266)
35 COG3826 Uncharacterized protei 58.8 22 0.00048 30.9 5.1 69 163-250 125-196 (236)
36 PF12851 Tet_JBP: Oxygenase do 58.0 20 0.00042 30.4 4.7 61 174-256 86-148 (171)
37 COG3145 AlkB Alkylated DNA rep 50.6 1.7E+02 0.0037 25.5 9.7 81 145-249 89-169 (194)
38 PLN02254 gibberellin 3-beta-di 50.0 62 0.0013 30.7 7.2 23 84-106 79-101 (358)
39 PLN02904 oxidoreductase 48.2 73 0.0016 30.2 7.4 26 82-107 79-104 (357)
40 PLN02639 oxidoreductase, 2OG-F 45.0 1.1E+02 0.0023 28.7 7.8 26 82-107 61-86 (337)
41 KOG0143 Iron/ascorbate family 43.4 80 0.0017 29.5 6.7 21 87-107 51-71 (322)
42 PLN02365 2-oxoglutarate-depend 43.0 72 0.0016 29.3 6.3 38 144-181 126-174 (300)
43 PLN02216 protein SRG1 40.9 76 0.0016 30.0 6.3 25 83-107 81-105 (357)
44 PLN02299 1-aminocyclopropane-1 40.8 1E+02 0.0022 28.7 7.0 25 83-107 34-58 (321)
45 PLN02276 gibberellin 20-oxidas 40.6 1.2E+02 0.0026 28.7 7.5 25 82-106 70-94 (361)
46 PLN02947 oxidoreductase 40.4 99 0.0021 29.5 7.0 24 83-106 94-117 (374)
47 PF14033 DUF4246: Protein of u 38.7 41 0.00088 33.5 4.2 73 176-255 364-453 (501)
48 PHA02985 hypothetical protein; 38.0 1.2E+02 0.0027 27.7 6.7 81 140-251 39-119 (271)
49 PLN00417 oxidoreductase, 2OG-F 37.8 1.2E+02 0.0025 28.6 7.0 26 82-107 73-98 (348)
50 COG3491 PcbC Isopenicillin N s 37.7 1.5E+02 0.0033 27.8 7.5 59 160-250 172-236 (322)
51 PTZ00273 oxidase reductase; Pr 37.5 1.6E+02 0.0034 27.2 7.7 23 84-106 37-59 (320)
52 PLN02750 oxidoreductase, 2OG-F 37.4 1.5E+02 0.0032 27.8 7.6 24 83-106 54-77 (345)
53 PLN02758 oxidoreductase, 2OG-F 35.9 1.1E+02 0.0023 29.0 6.4 25 83-107 83-107 (361)
54 PLN02912 oxidoreductase, 2OG-F 35.8 1.5E+02 0.0032 27.9 7.3 26 82-107 68-93 (348)
55 PLN02515 naringenin,2-oxogluta 34.3 1.2E+02 0.0026 28.7 6.5 25 82-106 66-90 (358)
56 PLN02997 flavonol synthase 34.3 84 0.0018 29.3 5.4 24 83-106 57-80 (325)
57 PF15330 SIT: SHP2-interacting 34.3 40 0.00086 26.5 2.7 20 23-42 3-22 (107)
58 PRK13726 conjugal transfer pil 34.2 52 0.0011 28.5 3.7 34 9-42 3-36 (188)
59 PLN03002 oxidoreductase, 2OG-F 32.3 1.7E+02 0.0036 27.3 7.0 24 83-106 39-62 (332)
60 PF15183 MRAP: Melanocortin-2 32.1 63 0.0014 24.5 3.3 17 19-35 44-60 (90)
61 PF12955 DUF3844: Domain of un 30.3 54 0.0012 25.7 2.8 17 23-39 70-86 (103)
62 PRK09553 tauD taurine dioxygen 30.3 32 0.0007 31.1 1.8 34 176-215 95-128 (277)
63 PF12729 4HB_MCP_1: Four helix 29.7 44 0.00096 26.5 2.4 13 30-42 18-30 (181)
64 PF05546 She9_MDM33: She9 / Md 29.2 56 0.0012 28.8 3.0 25 12-36 148-173 (207)
65 COG2850 Uncharacterized conser 28.7 88 0.0019 30.1 4.4 33 150-183 107-140 (383)
66 PF04835 Pox_A9: A9 protein co 28.3 1.5E+02 0.0032 20.5 4.3 21 26-46 30-50 (54)
67 PF14851 FAM176: FAM176 family 27.2 62 0.0014 27.2 2.9 25 21-45 22-46 (153)
68 PF13544 N_methyl_2: Type IV p 26.9 74 0.0016 19.2 2.4 22 5-26 4-25 (31)
69 PLN02403 aminocyclopropanecarb 25.8 1.4E+02 0.0029 27.7 5.1 24 83-106 30-53 (303)
70 PLN02156 gibberellin 2-beta-di 23.8 3.9E+02 0.0084 25.0 7.9 24 83-106 48-71 (335)
71 PLN02393 leucoanthocyanidin di 23.7 2.9E+02 0.0062 26.1 7.0 25 83-107 82-106 (362)
72 PF07172 GRP: Glycine rich pro 23.4 87 0.0019 24.0 2.8 18 16-33 3-20 (95)
73 PRK13254 cytochrome c-type bio 23.1 95 0.0021 25.8 3.2 10 28-37 21-30 (148)
74 TIGR01195 oadG_fam sodium pump 22.2 1.2E+02 0.0027 22.5 3.4 22 20-41 12-33 (82)
75 PRK06925 flagellar motor prote 21.8 1.2E+02 0.0025 26.8 3.7 6 1-6 1-6 (230)
76 PF15555 DUF4658: Domain of un 21.6 77 0.0017 25.5 2.2 19 23-41 73-91 (129)
77 COG5393 Predicted membrane pro 21.1 1.2E+02 0.0026 24.5 3.3 17 18-34 57-73 (131)
78 PF04277 OAD_gamma: Oxaloaceta 21.1 1.4E+02 0.0031 21.3 3.5 20 21-40 10-29 (79)
79 TIGR02409 carnitine_bodg gamma 20.8 90 0.0019 29.4 3.0 36 174-215 186-221 (366)
80 PF15240 Pro-rich: Proline-ric 20.6 49 0.0011 28.5 1.0 15 31-45 2-16 (179)
81 PF08173 YbgT_YccB: Membrane b 20.4 2.1E+02 0.0045 17.1 3.4 20 17-36 4-23 (28)
82 PF07423 DUF1510: Protein of u 20.3 91 0.002 27.7 2.7 15 144-158 153-167 (217)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.3e-53 Score=392.03 Aligned_cols=195 Identities=51% Similarity=0.862 Sum_probs=178.7
Q ss_pred ccCCeeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHHH
Q 024559 71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI 150 (266)
Q Consensus 71 ~~~~~~vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri 150 (266)
.-.+.|+|+|||+|+|++|+||||++||++||+++++.+.++++++..+|+...+++|+|+++|+...+++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999887777777889999999999987789999999999
Q ss_pred hhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccc
Q 024559 151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELS 230 (266)
Q Consensus 151 ~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~ 230 (266)
++++++|.++.|.+||+||++||+|++|+|++.+..+...+++|++|+|+|||||++||||+||.+.. ....+.++.++
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s 199 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS 199 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence 99999999999999999999999999999999764444567899999999999999999999998743 22334567889
Q ss_pred cccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559 231 ECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR 266 (266)
Q Consensus 231 ~c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG 266 (266)
+|.+.+++|+|++|+||||+|+++||++|++|+|+|
T Consensus 200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHag 235 (310)
T PLN00052 200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGS 235 (310)
T ss_pred hhhcCCeEeccCcceEEEEeccCCCCCCCcccccCC
Confidence 999999999999999999999999999999999997
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-47 Score=343.84 Aligned_cols=242 Identities=45% Similarity=0.700 Sum_probs=198.8
Q ss_pred cccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhcccc---CC-CCCCCCCcchhhhhhhhcccc-----cccccCCee
Q 024559 8 RLQAKKWS--TLTLVLSMLFMLTIVLLMLLAMGIFYIPI---GD-DDSPPNDLTSFRRRAFEKRSS-----IAEEKGEQW 76 (266)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 76 (266)
+..++++. ..+.++.++.....++..+..++.+..+. .+ .....+++.........+... -....+|.|
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k 89 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK 89 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence 45555543 34677777777777888888889998877 22 111234444333332222110 124568999
Q ss_pred EEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCcccee-eeCCCCCccccceeeccceeecCCchHHHHHHHHHHhhhcc
Q 024559 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTV-VDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTF 155 (266)
Q Consensus 77 vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v-~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~~g 155 (266)
+|++||+|++++||||+|++||++|++++++++.++++ .+..+|....+.+|+|+++|+..+.+++++.|++||+++++
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~ 169 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG 169 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999 45556777777899999999998889999999999999999
Q ss_pred CCCCCCCccEEEEcCCCCccccccccccc---c-cccCCCCceEEEEEEeccccCCCcceeccCCCCccccccccccccc
Q 024559 156 IPMEHGEGIQVLHYEVGQKYDAHYDYFLD---E-FNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSE 231 (266)
Q Consensus 156 lp~~~~E~lqv~rY~~G~~y~~H~D~~~~---~-~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~ 231 (266)
+|.+..|.|||++|+.||||.+|+|++.+ . .+..++|+|++|+++||+||++||+|+||.++.
T Consensus 170 l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~------------- 236 (289)
T KOG1591|consen 170 LPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM------------- 236 (289)
T ss_pred CCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCC-------------
Confidence 99999999999999999999999999952 2 245668999999999999999999999999742
Q ss_pred ccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559 232 CGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR 266 (266)
Q Consensus 232 c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG 266 (266)
.++|+|++|+|++|||+++||..|++|+|||
T Consensus 237 ----~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~ 267 (289)
T KOG1591|consen 237 ----KPAVKPKKGDALFWFNLHPDGEGDPRSLHGG 267 (289)
T ss_pred ----cccccCCCCCeeEEEEccCCCCCCccccccC
Confidence 2499999999999999999999999999996
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.97 E-value=5.7e-31 Score=223.75 Aligned_cols=158 Identities=44% Similarity=0.666 Sum_probs=135.2
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCc-hHHHHHHHHHHhhhccCC---CC
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIADFTFIP---ME 159 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~-d~lv~~I~~Ri~~~~glp---~~ 159 (266)
|.|++++||||++||++||+++++...++.+.++..+....+++|++..+|+.... +++++.|++||.++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999987778777654333356789999999998764 789999999999999998 78
Q ss_pred CCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccccccCCCeEE
Q 024559 160 HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSV 239 (266)
Q Consensus 160 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V 239 (266)
..|.+|+.+|.+|++|.+|+|...... .++|.+|+++||||+++||+|.||..+. .....|
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~---------------~~~~~v 141 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL---------------MVCATV 141 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC---------------ccceEE
Confidence 899999999999999999999876431 2689999999999999999999998641 124699
Q ss_pred ecccceEEEEecCCCCCCCCCCCCCCC
Q 024559 240 KPKRGDALLFWSMRPDATLDPSSLHGR 266 (266)
Q Consensus 240 ~Pk~G~aLlF~n~~~dG~~D~~slHaG 266 (266)
+|++|++|+|+|..+ +++|++
T Consensus 142 ~P~~G~~v~f~~~~~------~~~H~v 162 (178)
T smart00702 142 KPKKGDLLFFPSGRG------RSLHGV 162 (178)
T ss_pred eCCCCcEEEEeCCCC------CccccC
Confidence 999999999988743 777765
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.86 E-value=3.2e-21 Score=170.47 Aligned_cols=142 Identities=23% Similarity=0.263 Sum_probs=102.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCC-CccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHHHhhhc---------c
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPY-MVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT---------F 155 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~-l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~~---------g 155 (266)
|++++|+||++||+++++..+.. +....+ |.....+++|++..+-. ++++.+.|+++|...+ .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~----taG~~~~~vKnN~ql~~---d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRV----TAGAQAAQVKNNQQLPE---DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCc----CcCccchhcccccccCC---CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 68999999999999999998753 333322 12224667888876542 3456667777766543 3
Q ss_pred CCCCCCCccEEEEcCCCCcccccccccccccc-cCCCCceEEEEEEeccccC--CCcceeccCCCCcccccccccccccc
Q 024559 156 IPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFN-TKNGGQRMATLLMYLSDVE--EGGETVFPAANANFTSVRWWNELSEC 232 (266)
Q Consensus 156 lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~-~~~~~~R~~T~liYLNDv~--eGGeT~Fp~~~~~~s~~~~~~~l~~c 232 (266)
+|... .+++|+||.+|++|++|+|....... .....+|.+|+++||||++ +||||+|+...
T Consensus 75 lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~--------------- 138 (226)
T PRK05467 75 LPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY--------------- 138 (226)
T ss_pred ccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC---------------
Confidence 33333 57899999999999999999764211 1112357899999999875 89999998653
Q ss_pred cCCCeEEecccceEEEEecC
Q 024559 233 GKQGLSVKPKRGDALLFWSM 252 (266)
Q Consensus 233 ~~~~l~V~Pk~G~aLlF~n~ 252 (266)
....|+|++|++|+|++.
T Consensus 139 --g~~~Vkp~aG~~vlfps~ 156 (226)
T PRK05467 139 --GEHRVKLPAGDLVLYPST 156 (226)
T ss_pred --CcEEEecCCCeEEEECCC
Confidence 246899999999999863
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.52 E-value=8.1e-14 Score=128.73 Aligned_cols=136 Identities=19% Similarity=0.307 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCccceeeeCCCC-CccccceeeccceeecCCchHHHHHHHHHHhh-hccCC----CCCCCccEEEEc
Q 024559 96 AECEYLIDLAKPYMVKSTVVDSKTG-QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIAD-FTFIP----MEHGEGIQVLHY 169 (266)
Q Consensus 96 ~EC~~Li~~a~~~l~~s~v~~~~~g-~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~-~~glp----~~~~E~lqv~rY 169 (266)
++.-.+|+...-.+.+|.+.+..+| ....+++|+++++.++.. +.+.++|++.+.+ +.+.+ ++.+|.++++||
T Consensus 23 ~~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY 101 (354)
T PHA02813 23 KIIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKY 101 (354)
T ss_pred HHHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEE
Confidence 3444455544445777888875555 456888999999998853 4455555554443 22332 567999999999
Q ss_pred CCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccccccCCCeEEecccceEEEE
Q 024559 170 EVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLF 249 (266)
Q Consensus 170 ~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF 249 (266)
.+||+|++|.|+.... ....+.+|+|+|||++++||+|.|...+ .-+|. .|++|+|
T Consensus 102 ~kGq~F~~H~Dg~~~r----~k~~s~~tLLLYLN~~~~GGeT~f~~~~------------------~tsI~--~g~dlLF 157 (354)
T PHA02813 102 EKGDFFNNHRDFIHFK----SKNCYCYHLVLYLNNTSKGGNTNIHIKD------------------NTIFS--TKNDVLF 157 (354)
T ss_pred CCCcccCcccCCceee----cCCceEEEEEEEEeccCCCCceEEEcCC------------------CceEe--ecceEEE
Confidence 9999999999986532 1122999999999999999999998752 11466 8999999
Q ss_pred e-cCCCCC
Q 024559 250 W-SMRPDA 256 (266)
Q Consensus 250 ~-n~~~dG 256 (266)
. .+.+.|
T Consensus 158 dh~l~Heg 165 (354)
T PHA02813 158 DKTLNHSS 165 (354)
T ss_pred ecccccCC
Confidence 5 344444
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.47 E-value=1.4e-13 Score=128.76 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=92.0
Q ss_pred CccceeeeCCCCC-ccccceeeccceeecCCchHHHHHHHHHHhhh-----ccC--CCCCCCccEEEEcCCCCccccccc
Q 024559 109 MVKSTVVDSKTGQ-SKDSRVRTSSGTFLKRGQDRIIRGIEKRIADF-----TFI--PMEHGEGIQVLHYEVGQKYDAHYD 180 (266)
Q Consensus 109 l~~s~v~~~~~g~-~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~-----~gl--p~~~~E~lqv~rY~~G~~y~~H~D 180 (266)
+.+|.+.+..+|. ..+...|.|..+.+.. .+.+.|++|++.+ -+. .++.+|.++++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 5678888766663 4566678998887763 4566666666654 232 567899999999999999999999
Q ss_pred ccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccccccCCCeEEecccceEEEEe-cCCCCC
Q 024559 181 YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFW-SMRPDA 256 (266)
Q Consensus 181 ~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~-n~~~dG 256 (266)
+... ..+....+|+|+|||++++||+|.|+.. ...+|.|+.| |+|. .+.+.|
T Consensus 122 g~~~----rs~e~s~~tLLLYLNd~~~GGET~f~~~------------------~~~sI~pksg--LLFdh~l~Heg 174 (418)
T PHA02869 122 FSTV----FSKNIICVHLLLYLEQPETGGETVIYID------------------NNTSVKLKTD--HLFDKTIEHES 174 (418)
T ss_pred Ccee----cCCCEEEEEEEEEEeccCCCCceEEEeC------------------CCceEecCCC--eEeccccccCC
Confidence 8663 2356788999999999999999999872 2467999999 7774 455554
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.20 E-value=1.9e-11 Score=93.97 Aligned_cols=73 Identities=34% Similarity=0.539 Sum_probs=48.6
Q ss_pred cEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccC---CCcceeccCCCCcccccccccccccccCCCeEEe
Q 024559 164 IQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE---EGGETVFPAANANFTSVRWWNELSECGKQGLSVK 240 (266)
Q Consensus 164 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~---eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V~ 240 (266)
.|+.+|.+|++|+||+|... ...+.+|+++|||+++ +||+|+|.... ...... ..+. ...|+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~~--~~~~-----~~~~~ 65 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDVS--REVE-----DFDIV 65 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--TSSTC--EEEG-----GGSEE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCcc--eEEE-----ecccc
Confidence 47899999999999999753 3579999999999877 99999998742 100000 0000 11233
Q ss_pred cccceEEEEec
Q 024559 241 PKRGDALLFWS 251 (266)
Q Consensus 241 Pk~G~aLlF~n 251 (266)
|+.|++|+|.+
T Consensus 66 p~~g~~v~F~~ 76 (100)
T PF13640_consen 66 PKPGRLVIFPS 76 (100)
T ss_dssp -BTTEEEEEES
T ss_pred CCCCEEEEEeC
Confidence 99999999987
No 8
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.62 E-value=5e-08 Score=71.03 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=43.9
Q ss_pred CCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEecc----ccCCCcceeccCC
Q 024559 160 HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLS----DVEEGGETVFPAA 216 (266)
Q Consensus 160 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLN----Dv~eGGeT~Fp~~ 216 (266)
..+.+++.+|..|++|++|.|..... .+.+|.+|+||||| +..+||++.|...
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 35689999999999999999986542 25789999999999 4557899998764
No 9
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=98.57 E-value=2.1e-07 Score=79.57 Aligned_cols=143 Identities=20% Similarity=0.246 Sum_probs=89.0
Q ss_pred CEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCC-CCCccccceeeccceeecCCchHHHHHHHHHHhh-------hccC
Q 024559 85 RAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIAD-------FTFI 156 (266)
Q Consensus 85 ~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~-~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~-------~~gl 156 (266)
-.+-|+.+||+++|.++.+..+. +..+++. +-+..-..+|++..+-.+ .++.+.+.+-|.+ +.+.
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~----A~w~dGrat~g~q~a~vk~n~qlp~~---s~l~~~vg~~il~al~~~plff~a 75 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQ----AEWVDGRATQGPQGAQVKNNLQLPQD---SALARELGNEILQALTAHPLFFAA 75 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhh----ccccccccccCcchhhhhccccCCcc---cHHHHHHHHHHHHHHHhchhHHHh
Confidence 34568899999999999887653 2222211 111122345555443222 2344443333322 1222
Q ss_pred CCC-CCCccEEEEcCCCCcccccccccccccccCCCC---ceEEEEEEeccccC--CCcceeccCCCCcccccccccccc
Q 024559 157 PME-HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGG---QRMATLLMYLSDVE--EGGETVFPAANANFTSVRWWNELS 230 (266)
Q Consensus 157 p~~-~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~---~R~~T~liYLNDv~--eGGeT~Fp~~~~~~s~~~~~~~l~ 230 (266)
.+. ..++.+|.+|..|++|.+|.|+...... ...+ +..+++-++|+|++ +|||.+.-+..
T Consensus 76 ALp~t~~~P~Fn~Y~eg~~f~fHvDgavr~~h-p~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY------------- 141 (229)
T COG3128 76 ALPRTCLPPLFNRYQEGDFFGFHVDGAVRSIH-PGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY------------- 141 (229)
T ss_pred hcccccCCchhhhccCCCcccccccCcccccC-CCCCceeEeeeeeeeecCCccccCCceEEEeccc-------------
Confidence 222 4567899999999999999998764311 1122 23456778999986 79999997654
Q ss_pred cccCCCeEEecccceEEEEecC
Q 024559 231 ECGKQGLSVKPKRGDALLFWSM 252 (266)
Q Consensus 231 ~c~~~~l~V~Pk~G~aLlF~n~ 252 (266)
....|+-.+|++|+|++.
T Consensus 142 ----g~h~VklPAGdLVlypSt 159 (229)
T COG3128 142 ----GNHRVKLPAGDLVLYPST 159 (229)
T ss_pred ----cceEEeccCCCEEEcccc
Confidence 257888888999999764
No 10
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.96 E-value=9.1e-05 Score=67.54 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=64.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCC--ccccceeeccceeecCCchHHHH------HHHHHHhhhccCC
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQ--SKDSRVRTSSGTFLKRGQDRIIR------GIEKRIADFTFIP 157 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~--~~~~~~Rts~~~~l~~~~d~lv~------~I~~Ri~~~~glp 157 (266)
.+++++||+++||+.|.+..+..+..........+. ......|.. +.....++.+. .|...++++.|-+
T Consensus 30 yvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 30 FLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRSI---FEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred EEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEEE---ecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 468999999999999999886543221110000000 001112211 11111233332 3445555666644
Q ss_pred CCCCCccEEEEcC-CCCcccccccccccccccCCCCceEEEEEEeccccCC-Ccceec-cC
Q 024559 158 MEHGEGIQVLHYE-VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEE-GGETVF-PA 215 (266)
Q Consensus 158 ~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~e-GGeT~F-p~ 215 (266)
+......-+.+.. .|+.+.||.|+..-.........+.+|+.++|.|+.+ .|.+.| |.
T Consensus 107 ~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPG 167 (277)
T TIGR02408 107 VYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPG 167 (277)
T ss_pred eEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecC
Confidence 3221111113344 2567899999643110000113368999999999864 477776 54
No 11
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.96 E-value=4.8e-05 Score=64.06 Aligned_cols=157 Identities=18% Similarity=0.065 Sum_probs=76.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCC----Cc---cceeeeCCCCCccccceeeccceeecCCc---hHHH-H-HHHHHHhhh
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPY----MV---KSTVVDSKTGQSKDSRVRTSSGTFLKRGQ---DRII-R-GIEKRIADF 153 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~----l~---~s~v~~~~~g~~~~~~~Rts~~~~l~~~~---d~lv-~-~I~~Ri~~~ 153 (266)
.++++|+|+++||+.|.+..... .. ...+... +.. . .....++.... +.+. . .+...+.++
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFD--ESF-F----GDYTEQLAKSPNFYDLFLHPPRILDLVRAL 78 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEES--TSC-C----CTCCCCGCCCHHHHHHHHTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccc--ccc-c----cccccccccchhhHHHHhhHHHHHHHHHHh
Confidence 46899999999999999887642 11 0111110 000 0 00011111100 1111 2 455666666
Q ss_pred ccCCCC----CCCccE-EEEcC-CCCcc-cccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCcccccc
Q 024559 154 TFIPME----HGEGIQ-VLHYE-VGQKY-DAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANFTSVR 224 (266)
Q Consensus 154 ~glp~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~s~~~ 224 (266)
.|-... ....++ +.+-. +|... .||.|...-.. ....+.+|+.|+|.|+. +.|.+.+ |..........
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~ 155 (211)
T PF05721_consen 79 LGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPH 155 (211)
T ss_dssp HTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEE
T ss_pred hCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCcccc
Confidence 665432 112221 23332 46665 99999765321 11578999999999984 5566666 43321100000
Q ss_pred ccc-----cc------c-cccCCCeEEecccceEEEEecC
Q 024559 225 WWN-----EL------S-ECGKQGLSVKPKRGDALLFWSM 252 (266)
Q Consensus 225 ~~~-----~l------~-~c~~~~l~V~Pk~G~aLlF~n~ 252 (266)
.+. .. . ......+.+..++|++|||...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~ 195 (211)
T PF05721_consen 156 EERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSR 195 (211)
T ss_dssp CCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETT
T ss_pred cccccccccccccccccccccCceEEeecCCCeEEEEcCC
Confidence 000 00 0 1123557899999999999543
No 12
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=97.92 E-value=0.00015 Score=64.15 Aligned_cols=142 Identities=23% Similarity=0.405 Sum_probs=89.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHhcC-----CCccceeeeCCCCCccccceeeccceeecCCc-------------hHHHHHH
Q 024559 85 RAFVYHNFLSKAECEYLIDLAKP-----YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-------------DRIIRGI 146 (266)
Q Consensus 85 ~i~vi~nfLS~~EC~~Li~~a~~-----~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~-------------d~lv~~I 146 (266)
.+.+++|||-.+-=..+.+..+. .+.+..++... ....+++|..+.+|+.-.+ |.++...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~--~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPD--AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCc--CCcchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 47789999988765555544432 34444444322 2233478999999997532 1111111
Q ss_pred HHHHhhhccCCCCCCCccEEEEcC-CCCcccccccccccccccCCCCceEEEEEEeccc---cC-CCcc-eeccCCCCcc
Q 024559 147 EKRIADFTFIPMEHGEGIQVLHYE-VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSD---VE-EGGE-TVFPAANANF 220 (266)
Q Consensus 147 ~~Ri~~~~glp~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v~-eGGe-T~Fp~~~~~~ 220 (266)
..|+... ...-..-.|+.|. .|-.|-.|.|.- .+-.|..|++.|||. +. .||. -.||....
T Consensus 132 ~~r~~~~----~~gRtkAMVAcYPGNGtgYVrHVDNP-------~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~-- 198 (280)
T KOG3710|consen 132 NGRLGSY----IIGRTKAMVACYPGNGTGYVRHVDNP-------HGDGRCITCIYYLNQNWDVKVHGGILRIFPEGST-- 198 (280)
T ss_pred ccccccc----cccceeEEEEEecCCCceeeEeccCC-------CCCceEEEEEEEcccCcceeeccceeEeccCCCC--
Confidence 1111111 1113356788897 467999999954 355699999999995 33 3444 46776543
Q ss_pred cccccccccccccCCCeEEecccceEEEEecCCCC
Q 024559 221 TSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPD 255 (266)
Q Consensus 221 s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~n~~~d 255 (266)
.-..|.|+-++.||||+-+.+
T Consensus 199 --------------~~adieP~fdrLlffwSdrrn 219 (280)
T KOG3710|consen 199 --------------TFADIEPKFDRLLFFWSDRRN 219 (280)
T ss_pred --------------cccccCcCCCeEEEEEecCCC
Confidence 245799999999999998766
No 13
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=97.54 E-value=0.00029 Score=65.59 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=64.6
Q ss_pred cccceeeccceeecC-CchHHHHHHHHHHhhhc-c--CCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEE
Q 024559 123 KDSRVRTSSGTFLKR-GQDRIIRGIEKRIADFT-F--IPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATL 198 (266)
Q Consensus 123 ~~~~~Rts~~~~l~~-~~d~lv~~I~~Ri~~~~-g--lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 198 (266)
.+...|.|+...+.. ..+.+.++|.+.+..-+ . -.+...+.+.+.+|+.|++|+.|.|.... ......-.++
T Consensus 36 ~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~L 111 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHL 111 (339)
T ss_pred ccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEE
Confidence 344478888876663 34677777777665432 2 12345678999999999999999994332 2345678999
Q ss_pred EEeccccCCCcceecc
Q 024559 199 LMYLSDVEEGGETVFP 214 (266)
Q Consensus 199 liYLNDv~eGGeT~Fp 214 (266)
++||+.+++||+|.+.
T Consensus 112 vLyL~~~~~GGktkiy 127 (339)
T PF03336_consen 112 VLYLNNPENGGKTKIY 127 (339)
T ss_pred EEEEeccCCCceEEEE
Confidence 9999999999999976
No 14
>PHA02866 Hypothetical protein; Provisional
Probab=97.19 E-value=0.0008 Score=61.60 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=67.5
Q ss_pred CccceeeeCCCC-CccccceeeccceeecCCchHHHHHHHHHHhhhc--cCCCCCCCccEEEEcCCCCcccccccccccc
Q 024559 109 MVKSTVVDSKTG-QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT--FIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE 185 (266)
Q Consensus 109 l~~s~v~~~~~g-~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~~--glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~ 185 (266)
+.+|.+.+.+.| .......|.++++ +++...+. |+..+. ...+-..+.+.+.+|..|.+|.-|.|....+
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~ 104 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED 104 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec
Confidence 677777765545 3345556666554 45666665 444442 2223346679999999999999999975532
Q ss_pred cccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 186 FNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 186 ~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
....+-.++++||+.+++||+|.++-
T Consensus 105 ----~~~~~~Y~LvLyL~~p~~GGkt~iyv 130 (333)
T PHA02866 105 ----RHRGREYTLVLHLSSPKNGGKTDVCV 130 (333)
T ss_pred ----cCCceEEEEEEEEeccccCCceEEEe
Confidence 22457789999999999999999983
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.99 E-value=0.018 Score=52.96 Aligned_cols=121 Identities=12% Similarity=0.009 Sum_probs=62.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCc-cceeeeCCCCCccccceeeccceeecCCchHHH------HHHHHHHhhhccCCC
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPYMV-KSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII------RGIEKRIADFTFIPM 158 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~l~-~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv------~~I~~Ri~~~~glp~ 158 (266)
.+++.++||++|++.|.+.++..+. +..... ... ....|.+ |-....++.+ .+|...+++++|-++
T Consensus 16 yv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~-~~~---~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~llG~~v 88 (288)
T TIGR01762 16 FIGPFTLYSPEEMKETWKRIRLRLLDRSAAPY-QDL---GGTNIAN---YDRHLDDDFLASHICRPEICHRVESILGPNV 88 (288)
T ss_pred EEeCcCCCCHHHHHHHHHHHHHHhhccccccc-cCC---CCceeEe---eeecccCHHHHHHhcCHHHHHHHHHHhCCcE
Confidence 4679999999999999988754322 111000 000 0111211 1111112222 234455556666443
Q ss_pred CCCCccEEEEcCCCCcccccccccccccc--------cCCCCceEEEEEEeccccC-CCcceec
Q 024559 159 EHGEGIQVLHYEVGQKYDAHYDYFLDEFN--------TKNGGQRMATLLMYLSDVE-EGGETVF 213 (266)
Q Consensus 159 ~~~E~lqv~rY~~G~~y~~H~D~~~~~~~--------~~~~~~R~~T~liYLNDv~-eGGeT~F 213 (266)
...-.--+.++..++.+.||.|..+-... ......+.+|+.+.|.|+. +-|.+.|
T Consensus 89 ~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~v 152 (288)
T TIGR01762 89 LCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQF 152 (288)
T ss_pred EeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEE
Confidence 32222234455544558999996432110 0112348899999999986 4566666
No 16
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.009 Score=53.93 Aligned_cols=74 Identities=28% Similarity=0.286 Sum_probs=56.9
Q ss_pred ccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccc---cCCCcce-eccCCCCcccccccccccccccCCCeE
Q 024559 163 GIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSD---VEEGGET-VFPAANANFTSVRWWNELSECGKQGLS 238 (266)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v~eGGeT-~Fp~~~~~~s~~~~~~~l~~c~~~~l~ 238 (266)
..|+.-|.+|-+|..|-|.+.+ ...|.+|.++|+|. .+.||+. .|+....+.... ...-.
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~~----------~~~~t 200 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTAA----------DSFKT 200 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccccccc----------ccccc
Confidence 6899999999999999998753 35799999999997 4689999 888764321100 12357
Q ss_pred EecccceEEEEecC
Q 024559 239 VKPKRGDALLFWSM 252 (266)
Q Consensus 239 V~Pk~G~aLlF~n~ 252 (266)
|.|+-+++++|.+-
T Consensus 201 i~P~fn~lv~F~s~ 214 (252)
T COG3751 201 IAPVFNSLVFFKSR 214 (252)
T ss_pred cCCCCceEEEEEec
Confidence 89999999988653
No 17
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.54 E-value=0.0011 Score=50.41 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred CccEEEEcC---CCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccccccCCCeE
Q 024559 162 EGIQVLHYE---VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLS 238 (266)
Q Consensus 162 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~ 238 (266)
+.+++.+|. .+..+.+|+|.. .+++|++++ .++|++.|...+ ..+.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-----------------~~~~ 50 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-----------------EWVD 50 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-----------------EEEE
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-----------------cccC
Confidence 468999999 888999999963 467999999 678899998753 1356
Q ss_pred EecccceEEEE-ecCC--CCCCCCCCCCCC
Q 024559 239 VKPKRGDALLF-WSMR--PDATLDPSSLHG 265 (266)
Q Consensus 239 V~Pk~G~aLlF-~n~~--~dG~~D~~slHa 265 (266)
|.|..+..+++ .+.. -.+...++++|+
T Consensus 51 v~~~~~~~~v~~G~~l~~~t~g~~~~~~Hr 80 (98)
T PF03171_consen 51 VPPPPGGFIVNFGDALEILTNGRYPATLHR 80 (98)
T ss_dssp ----TTCEEEEEBHHHHHHTTTSS----EE
T ss_pred ccCccceeeeeceeeeecccCCccCCceee
Confidence 66666655554 3422 134456777775
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=96.33 E-value=0.01 Score=45.73 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=40.8
Q ss_pred EEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCccccc-cc-ccccccccCCCeEEecccc
Q 024559 167 LHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSV-RW-WNELSECGKQGLSVKPKRG 244 (266)
Q Consensus 167 ~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~-~~-~~~l~~c~~~~l~V~Pk~G 244 (266)
..|..|++-.+|.= ....++.++||+-+++.|.+.|.+........ +. +............|+|+.|
T Consensus 5 ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G 73 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEG 73 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TT
T ss_pred EEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCC
Confidence 45778888888832 23478999999998888999997653322111 11 1111122234678999999
Q ss_pred eEEEEecCCCC
Q 024559 245 DALLFWSMRPD 255 (266)
Q Consensus 245 ~aLlF~n~~~d 255 (266)
++|||++-..+
T Consensus 74 ~lvlFPs~l~H 84 (101)
T PF13759_consen 74 DLVLFPSWLWH 84 (101)
T ss_dssp EEEEEETTSEE
T ss_pred EEEEeCCCCEE
Confidence 99999976544
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.99 E-value=0.087 Score=46.11 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=50.7
Q ss_pred cEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCc--ccccccccccccccCCCeEEec
Q 024559 164 IQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANAN--FTSVRWWNELSECGKQGLSVKP 241 (266)
Q Consensus 164 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~--~s~~~~~~~l~~c~~~~l~V~P 241 (266)
.=+.++.+|++-..|.= .+..++..+||+.+..+|...|.+.... ...++.-..........+.|+|
T Consensus 98 ~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P 166 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPP 166 (201)
T ss_pred EeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECC
Confidence 34466788988777732 2357999999999888899988543211 1111100000011123567999
Q ss_pred ccceEEEEecCCCCC
Q 024559 242 KRGDALLFWSMRPDA 256 (266)
Q Consensus 242 k~G~aLlF~n~~~dG 256 (266)
+.|++|+|++-..++
T Consensus 167 ~~G~lvlFPS~L~H~ 181 (201)
T TIGR02466 167 QEGRVLLFESWLRHE 181 (201)
T ss_pred CCCeEEEECCCCcee
Confidence 999999999865544
No 20
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=94.68 E-value=0.43 Score=40.41 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=66.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCC--CccceeeeCCCCCccc---------------cceeeccc-eeecCC---chHHHH
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPY--MVKSTVVDSKTGQSKD---------------SRVRTSSG-TFLKRG---QDRIIR 144 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~--l~~s~v~~~~~g~~~~---------------~~~Rts~~-~~l~~~---~d~lv~ 144 (266)
+++++||||++|.+.|++..... +...+... ++... ..++-+.. .+-... -.+.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 67999999999999999887632 11111100 11100 00111100 000000 113344
Q ss_pred HHHHHHhhhcc-CCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCccccc
Q 024559 145 GIEKRIADFTF-IPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSV 223 (266)
Q Consensus 145 ~I~~Ri~~~~g-lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~ 223 (266)
.+.+++....+ .+.......-+..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-.-+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~~--- 143 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKSD--- 143 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECGG---
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeeccC---
Confidence 55555554433 22223446778899999999999997521 23667888776 4444453221100
Q ss_pred ccccccccccCCCeEEecccceEEEEe
Q 024559 224 RWWNELSECGKQGLSVKPKRGDALLFW 250 (266)
Q Consensus 224 ~~~~~l~~c~~~~l~V~Pk~G~aLlF~ 250 (266)
.+..+.|.-..|+++++.
T Consensus 144 ---------~~~~~~~~L~~gsl~vm~ 161 (194)
T PF13532_consen 144 ---------DDEPIEVPLPPGSLLVMS 161 (194)
T ss_dssp ---------TS-EEEEEE-TTEEEEEE
T ss_pred ---------CCccEEEEcCCCCEEEeC
Confidence 013467888899999985
No 21
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=92.67 E-value=0.15 Score=43.20 Aligned_cols=73 Identities=25% Similarity=0.396 Sum_probs=51.2
Q ss_pred ccEEEEcCCCCcccccccccccccccCCCCceEEEEEEecccc---CCCcceeccCCCCcccccccccccccccCCCeEE
Q 024559 163 GIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDV---EEGGETVFPAANANFTSVRWWNELSECGKQGLSV 239 (266)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv---~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V 239 (266)
..-+++|++|++=..|.|..-+-. =-+-+.+-||++ ++|||.+.-.-..... .....+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~Q------------SR~~V~ 123 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQ------------SRAMVL 123 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCcc------------CccccC
Confidence 456899999999999999643210 114677779985 5899999854322211 135678
Q ss_pred ecccceEEEEe-cCCC
Q 024559 240 KPKRGDALLFW-SMRP 254 (266)
Q Consensus 240 ~Pk~G~aLlF~-n~~~ 254 (266)
.+++|+|+||. |..|
T Consensus 124 ~L~qGda~if~t~~RP 139 (173)
T PF09859_consen 124 PLRQGDALIFATNHRP 139 (173)
T ss_pred CcCCCCEEEEecCCCC
Confidence 99999999996 4554
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=89.27 E-value=8.7 Score=33.97 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=78.4
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcCC-----CccceeeeCCCCCccccceeec-cc--eeecC-------------C--
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAKPY-----MVKSTVVDSKTGQSKDSRVRTS-SG--TFLKR-------------G-- 138 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~~~-----l~~s~v~~~~~g~~~~~~~Rts-~~--~~l~~-------------~-- 138 (266)
..|.++++++|. .+|.+.|++..+.. +.. .+.. .| ..-++|.. -+ .|+.+ .
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~-~~~~--gg--~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~p 89 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRH-MVTP--GG--YTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKP 89 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccc-eecC--CC--CcceeEEeccccceEecCCCCcccCCcCCCCCCC
Confidence 667899999995 88888888665431 221 1110 01 11222211 11 22210 0
Q ss_pred ---chHHHHHHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 139 ---QDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 139 ---~d~lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
-.+.+..|.++++...+.+.-..+..-|..|.+|+.-.+|.|.-..+ .+.-++++-+ |.+-.|-.
T Consensus 90 wp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~ 157 (213)
T PRK15401 90 WPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQF 157 (213)
T ss_pred CCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEe
Confidence 11357788888888777654455678889999999999999963211 1233555554 44445533
Q ss_pred CCCcccccccccccccccCCCeEEecccceEEEE
Q 024559 216 ANANFTSVRWWNELSECGKQGLSVKPKRGDALLF 249 (266)
Q Consensus 216 ~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF 249 (266)
-.... .....+|.-.-|++|++
T Consensus 158 ~~~~~------------~~~~~~l~L~~Gdllvm 179 (213)
T PRK15401 158 GGLKR------------SDPLQRILLEHGDVVVW 179 (213)
T ss_pred cccCC------------CCceEEEEeCCCCEEEE
Confidence 21000 01235788888999988
No 23
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.78 E-value=2.2 Score=36.79 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=54.5
Q ss_pred EeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccc-eeeeC----CCCCccccceeeccceeecCCchHHHHHHHHHHhhh
Q 024559 79 IVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKS-TVVDS----KTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADF 153 (266)
Q Consensus 79 ~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s-~v~~~----~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~ 153 (266)
++-..|..++++||+++||-..+.+..+..-++- .+..+ .-|..+ .....++..-.+-.+.+...|..+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvv------h~~glipeelP~wLq~~v~kinnl 80 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVV------HKTGLIPEELPPWLQYYVDKINNL 80 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCcc------ccCCcCccccCHHHHHHHHHhhcc
Confidence 3456788899999999999999888775321110 00000 001100 011122221223445555555543
Q ss_pred ccCCCCCCCccEEEEcCCCCccccccccc
Q 024559 154 TFIPMEHGEGIQVLHYEVGQKYDAHYDYF 182 (266)
Q Consensus 154 ~glp~~~~E~lqv~rY~~G~~y~~H~D~~ 182 (266)
--++. .....-|..|.+||---||.|+-
T Consensus 81 glF~s-~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 81 GLFKS-PANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred cccCC-CcceeEeecccCCCCcCcCCCCC
Confidence 22222 33356778899999999999973
No 24
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.71 E-value=3.6 Score=38.06 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=42.0
Q ss_pred cccccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCcccccccccccccc-cCCCeEEecccceEEEEe
Q 024559 174 KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANFTSVRWWNELSEC-GKQGLSVKPKRGDALLFW 250 (266)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~s~~~~~~~l~~c-~~~~l~V~Pk~G~aLlF~ 250 (266)
.=.||.|+.... .+..-...+.+=|-|.. +-|.|.+ |... .....|.|.+.+.- ....+-|.-.+|++|||.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH-~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~ 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSH-KWDVIPERPDHETYLERNAVPVELEKGDALLFN 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEeccc-ccccCCCCCCccchhhhcceeeeecCCCEEEEc
Confidence 357999965432 24455667888888864 5688877 4432 11111222222111 123567888999999993
No 25
>PHA02923 hypothetical protein; Provisional
Probab=78.59 E-value=7.1 Score=36.21 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhhhccC--CCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCC
Q 024559 140 DRIIRGIEKRIADFTFI--PMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAAN 217 (266)
Q Consensus 140 d~lv~~I~~Ri~~~~gl--p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 217 (266)
+.+.++|++.|-.-... .+.-...+.+..|++|.+ .|. . ....-..+++||+.++.||+|.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 55777777766543221 122334689999999985 111 1 122678899999999999999998875
Q ss_pred C
Q 024559 218 A 218 (266)
Q Consensus 218 ~ 218 (266)
.
T Consensus 111 t 111 (315)
T PHA02923 111 T 111 (315)
T ss_pred C
Confidence 4
No 26
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=72.00 E-value=34 Score=29.00 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcc
Q 024559 141 RIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANF 220 (266)
Q Consensus 141 ~lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~ 220 (266)
+.+..|.++++..++.+....+..-|..|.+|+.-.+|.|.... ....-++++-+ |-..+|-.-....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~-----~~~~pI~SvSL-------G~~r~F~~~~~~~ 141 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEP-----DLRAPLLSVSL-------GLPAIFLIGGLKR 141 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccc-----cCCCCEEEEeC-------CCCEEEEecCCcC
Confidence 56788888999888876556677888899999999999994221 11234444443 4444553321100
Q ss_pred cccccccccccccCCCeEEecccceEEEE
Q 024559 221 TSVRWWNELSECGKQGLSVKPKRGDALLF 249 (266)
Q Consensus 221 s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF 249 (266)
++....+.-.-|++|++
T Consensus 142 ------------~~~~~~l~L~sGsllvM 158 (169)
T TIGR00568 142 ------------NDPPKRLRLHSGDVVIM 158 (169)
T ss_pred ------------CCceEEEEeCCCCEEEE
Confidence 01246788899999998
No 27
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=70.07 E-value=8.4 Score=27.02 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 024559 11 AKKWSTLTLVLSMLFMLTIVLLMLLAMGIF 40 (266)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (266)
.+-|.-+||++.++...+|.|++-+..+||
T Consensus 12 skFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 12 SKFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777899999999999999988888888
No 28
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=68.58 E-value=6.8 Score=35.32 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCC-Cccceeee--CCCCCcc---ccceeeccceeecCCchHHHHHHHHHHhhhccC-
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAKPY-MVKSTVVD--SKTGQSK---DSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFI- 156 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~~~-l~~s~v~~--~~~g~~~---~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~~gl- 156 (266)
|-+.+++||||.+|=..|++..... +..|.-.+ ..-|..+ ....|+..-+=+ ....+.+.+|+..+.++
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~----P~~~~~v~rrm~~yp~l~ 147 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGM----PEYADMVLRRMSEYPVLK 147 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCC----chHHHHHHHHhhccchhh
Confidence 7899999999999999999997642 11111111 0112221 223444332222 34667777788776432
Q ss_pred ---CCCCCCccEEEEcCC--CCcccccccccc
Q 024559 157 ---PMEHGEGIQVLHYEV--GQKYDAHYDYFL 183 (266)
Q Consensus 157 ---p~~~~E~lqv~rY~~--G~~y~~H~D~~~ 183 (266)
|.+.. =+-|++ |.--.||.|-..
T Consensus 148 gfqp~EqC----nLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 148 GFQPFEQC----NLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred ccCcHHHc----CcccccccCCccCccccchh
Confidence 22211 123764 888999999544
No 29
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=66.89 E-value=12 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=13.2
Q ss_pred CcccccccccccccchHHHHHHHHHHH
Q 024559 1 MVKLRHSRLQAKKWSTLTLVLSMLFML 27 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (266)
|+|.|..+-.......|.+.++=|+++
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDlmTL 27 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADLMTL 27 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHHHHH
Confidence 777776333344444444544444333
No 30
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=66.26 E-value=26 Score=33.95 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=67.9
Q ss_pred EEeecCCC-EEEEcCCCCHHHHHHHHHHhcC--CCccceeeeCCCCCccccceeeccc---eeecCC--------chHHH
Q 024559 78 EIVAWEPR-AFVYHNFLSKAECEYLIDLAKP--YMVKSTVVDSKTGQSKDSRVRTSSG---TFLKRG--------QDRII 143 (266)
Q Consensus 78 E~ls~~P~-i~vi~nfLS~~EC~~Li~~a~~--~l~~s~v~~~~~g~~~~~~~Rts~~---~~l~~~--------~d~lv 143 (266)
|.--..|+ =+++++|+++...+.+..-... ++.+-. ..-+|..++ +-++.- .+.+.
T Consensus 29 ~~ekngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~----------tDlyr~~QtgdL~nl~~le~p~lf~~r~~Ly 98 (476)
T KOG3844|consen 29 EYEKNGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKE----------TDLYRVLQTGDLANLEGLEFPALFSFRDSLY 98 (476)
T ss_pred hhhccCCCcceeeeccCCHHHHHHHHHHHhhccchhhhc----------chhhheeccccccccccccchhHHHHHHHHH
Confidence 33334565 5789999998877777643322 122110 111221111 111100 12233
Q ss_pred HHHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccC----CCcceeccC
Q 024559 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE----EGGETVFPA 215 (266)
Q Consensus 144 ~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~----eGGeT~Fp~ 215 (266)
.....-++.++|--...--.+.+..|..|.+--.|-|-. +.|.+.+++||-|.. .||+...+.
T Consensus 99 ke~r~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~ 165 (476)
T KOG3844|consen 99 KEARGEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFP 165 (476)
T ss_pred HHHHHHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecc
Confidence 344455666665333333467889999999999997743 468889999999865 488876543
No 31
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=62.54 E-value=29 Score=31.41 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhccCCCC--------CCCccEEEEcCCC------CcccccccccccccccCCCCceEEEEEEe
Q 024559 141 RIIRGIEKRIADFTFIPME--------HGEGIQVLHYEVG------QKYDAHYDYFLDEFNTKNGGQRMATLLMY 201 (266)
Q Consensus 141 ~lv~~I~~Ri~~~~glp~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liY 201 (266)
.+..+|.+-++..+|++.+ ....+++.+|.+- --..+|.|+. .+|+|+.
T Consensus 87 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q 149 (262)
T PLN03001 87 ALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ 149 (262)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe
Confidence 3445555555555666521 1234789999752 1256788853 4788754
No 32
>PLN02485 oxidoreductase
Probab=60.41 E-value=25 Score=32.68 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.++..+=++.+.++.+.+.++
T Consensus 46 GFf~l~nHGi~~~l~~~~~~~~~ 68 (329)
T PLN02485 46 GFFYVKGHGISDSLIKKVREVTH 68 (329)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
Confidence 44555556667777777777664
No 33
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=59.03 E-value=41 Score=31.67 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=18.6
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.++..+-++.+.++++.+.++
T Consensus 60 GFF~v~nHGI~~~li~~~~~~s~ 82 (341)
T PLN02984 60 GIFRLENHGIPLTLMSQLKEISE 82 (341)
T ss_pred cEEEEECCCCCHHHHHHHHHHHH
Confidence 45677888889999999988875
No 34
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=58.93 E-value=42 Score=30.70 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCccEEEEcCCCCcccc-cccccccccccCCCCceEEEEEEeccccCCCcceeccCCCC
Q 024559 140 DRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDA-HYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANA 218 (266)
Q Consensus 140 d~lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~-H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~ 218 (266)
..+++.|++.+.+ +.-.++.+++..|+.||-++. +.+ .....++++-|..+..||..++.....
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~~ 96 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTIS 96 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeeccc
Confidence 4677777777743 333466899999999997753 222 346789999999999999988865422
Q ss_pred cccccccccccccccCCCeEEecccceEEEEec
Q 024559 219 NFTSVRWWNELSECGKQGLSVKPKRGDALLFWS 251 (266)
Q Consensus 219 ~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~n 251 (266)
+ ..-.++|..|.||+--+
T Consensus 97 ~---------------~kkii~~~~~~aVlLsp 114 (266)
T PF06822_consen 97 N---------------DKKIITPNQNMAVLLSP 114 (266)
T ss_pred C---------------CceEEecCCCeEEEecc
Confidence 2 23567888888887643
No 35
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.77 E-value=22 Score=30.94 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=46.3
Q ss_pred ccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccC---CCcceeccCCCCcccccccccccccccCCCeEE
Q 024559 163 GIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE---EGGETVFPAANANFTSVRWWNELSECGKQGLSV 239 (266)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~---eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V 239 (266)
..-+++|.+|.+=-.|.|-.-+- -=-+-+.|-|+|++ .|||.+.-.-..... ..+-.|
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~Q------------Sr~~vv 185 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRMQ------------SRPTVV 185 (236)
T ss_pred CceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEecccccc------------cCCcee
Confidence 45678999999999999964321 11245667799874 799887744322111 124567
Q ss_pred ecccceEEEEe
Q 024559 240 KPKRGDALLFW 250 (266)
Q Consensus 240 ~Pk~G~aLlF~ 250 (266)
.-.+|++++|-
T Consensus 186 pLrqG~g~vFa 196 (236)
T COG3826 186 PLRQGDGVVFA 196 (236)
T ss_pred eccCCceEEEE
Confidence 88899999995
No 36
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=57.99 E-value=20 Score=30.44 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=40.7
Q ss_pred cccccccccccccccCCCCceEEEEEEecccc-CCCcceeccCCCCcccccccccccccccCCCeEEecccceEEEEe-c
Q 024559 174 KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDV-EEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFW-S 251 (266)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv-~eGGeT~Fp~~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~-n 251 (266)
....|.|... .+--+++++-|.-. ++||..++|..+.+ -.++.|.|..|++|+|- +
T Consensus 86 ~t~~HrD~~~--------~~~~~~~~~t~~~gd~~~g~l~lp~~~~~--------------~~g~~~~~~~GtVl~~~~~ 143 (171)
T PF12851_consen 86 CTHSHRDTHN--------MPNGYDVLCTLGRGDYDGGRLELPGLDPN--------------ILGVAFAYQPGTVLIFCAK 143 (171)
T ss_pred CccceecCCC--------CCCCeEEEEecCCccccCceEeccccccc--------------cCCEEEecCCCcEEEEccc
Confidence 4567777543 22236666666543 78999999983221 14799999999999995 3
Q ss_pred CCCCC
Q 024559 252 MRPDA 256 (266)
Q Consensus 252 ~~~dG 256 (266)
...+|
T Consensus 144 ~~~Hg 148 (171)
T PF12851_consen 144 RELHG 148 (171)
T ss_pred ceeee
Confidence 34444
No 37
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=50.62 E-value=1.7e+02 Score=25.50 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=50.2
Q ss_pred HHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccc
Q 024559 145 GIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVR 224 (266)
Q Consensus 145 ~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~ 224 (266)
.+...+....|.+....|..-+..|.+|..-.+|.|.-... ...=++++-+ |....|-.-..+
T Consensus 89 ~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSL-------g~~~~F~~~~~~----- 151 (194)
T COG3145 89 ALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSL-------GAPCIFRLRGRR----- 151 (194)
T ss_pred HHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEec-------CCCeEEEecccc-----
Confidence 44445555778887788889999999999999999964321 1112344433 333333221100
Q ss_pred cccccccccCCCeEEecccceEEEE
Q 024559 225 WWNELSECGKQGLSVKPKRGDALLF 249 (266)
Q Consensus 225 ~~~~l~~c~~~~l~V~Pk~G~aLlF 249 (266)
. .+...++.=..|++|++
T Consensus 152 ------r-~~~~~~~~L~~Gdvvvm 169 (194)
T COG3145 152 ------R-RGPGLRLRLEHGDVVVM 169 (194)
T ss_pred ------C-CCCceeEEecCCCEEEe
Confidence 0 12457888889999998
No 38
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=50.02 E-value=62 Score=30.67 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+..++.+=++++.++.+.+.++
T Consensus 79 GFF~vvnHGI~~~l~~~~~~~~~ 101 (358)
T PLN02254 79 GVFQVTNHGIPLSLLDDIESQTR 101 (358)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHH
Confidence 45567777778888888887764
No 39
>PLN02904 oxidoreductase
Probab=48.18 E-value=73 Score=30.16 Aligned_cols=26 Identities=12% Similarity=-0.127 Sum_probs=20.1
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
..-+..++.+-++.+.++++.+.++.
T Consensus 79 ~~GFf~v~nHGI~~~li~~~~~~~~~ 104 (357)
T PLN02904 79 GFGFFQVINHGIPSSVVKDALDAATR 104 (357)
T ss_pred HCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 34566777778999999999987753
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=44.96 E-value=1.1e+02 Score=28.71 Aligned_cols=26 Identities=15% Similarity=-0.026 Sum_probs=20.4
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
..-+.+++..=++.+.++++.+.++.
T Consensus 61 ~~GFf~v~nHGI~~~l~~~~~~~~~~ 86 (337)
T PLN02639 61 RYGFFQVINHGVSAELVEKMLAVAHE 86 (337)
T ss_pred hCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34566788888899999999988753
No 41
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=43.36 E-value=80 Score=29.52 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=16.7
Q ss_pred EEEcCCCCHHHHHHHHHHhcC
Q 024559 87 FVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 87 ~vi~nfLS~~EC~~Li~~a~~ 107 (266)
-++.+=++.+..+.+.+.++.
T Consensus 51 qviNHGI~~~l~~~~~~~~~~ 71 (322)
T KOG0143|consen 51 QVINHGISLELLDKVKEASKE 71 (322)
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 567777899999998888753
No 42
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=43.03 E-value=72 Score=29.31 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHHHHHHhhhccC-CCCC----CCccEEEEcCCC-----C-cccccccc
Q 024559 144 RGIEKRIADFTFI-PMEH----GEGIQVLHYEVG-----Q-KYDAHYDY 181 (266)
Q Consensus 144 ~~I~~Ri~~~~gl-p~~~----~E~lqv~rY~~G-----~-~y~~H~D~ 181 (266)
.+|.+-++.-+|+ +... ...+++.+|.+- + --.+|.|+
T Consensus 126 ~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~ 174 (300)
T PLN02365 126 MDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDS 174 (300)
T ss_pred HHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCC
Confidence 3444444444677 4321 236889999542 1 24567775
No 43
>PLN02216 protein SRG1
Probab=40.86 E-value=76 Score=30.00 Aligned_cols=25 Identities=0% Similarity=-0.250 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
.-+.+++.+=++.+..+.+.+.++.
T Consensus 81 ~GFF~v~nHGI~~~li~~~~~~~~~ 105 (357)
T PLN02216 81 WGFFQLVNHGIDSSFLDKVKSEIQD 105 (357)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3556777788899888888887753
No 44
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=40.85 E-value=1e+02 Score=28.67 Aligned_cols=25 Identities=8% Similarity=-0.128 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
.-+.++..+=++.+.++++.+.++.
T Consensus 34 ~GFF~v~nHGI~~~l~~~~~~~~~~ 58 (321)
T PLN02299 34 WGFFELVNHGISHELMDEVEKMTKE 58 (321)
T ss_pred cCEEEEECCCCCHHHHHHHHHHHHH
Confidence 3455666666788888888887753
No 45
>PLN02276 gibberellin 20-oxidase
Probab=40.64 E-value=1.2e+02 Score=28.70 Aligned_cols=25 Identities=8% Similarity=-0.205 Sum_probs=19.8
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
..-+..++.+=++.+.++.+.+.++
T Consensus 70 ~~GFF~l~nHGI~~~l~~~~~~~~~ 94 (361)
T PLN02276 70 KHGFFQVVNHGVDAALIRAAHEYMD 94 (361)
T ss_pred HCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3456677778889999999998875
No 46
>PLN02947 oxidoreductase
Probab=40.44 E-value=99 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+..++.+-++.+.++.+.+.++
T Consensus 94 ~GFF~v~nHGIp~~li~~~~~~~~ 117 (374)
T PLN02947 94 YGFFQVVNHGVPSEVIGGMIDVAR 117 (374)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 345567777789998888888765
No 47
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=38.68 E-value=41 Score=33.53 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=42.0
Q ss_pred cccccccccccccCCCCceEEEEEEecccc-CCCcceeccCCCC-cc-------c--ccccccc---c---ccccCCCeE
Q 024559 176 DAHYDYFLDEFNTKNGGQRMATLLMYLSDV-EEGGETVFPAANA-NF-------T--SVRWWNE---L---SECGKQGLS 238 (266)
Q Consensus 176 ~~H~D~~~~~~~~~~~~~R~~T~liYLNDv-~eGGeT~Fp~~~~-~~-------s--~~~~~~~---l---~~c~~~~l~ 238 (266)
.||.++.. +.+-.+|.|.|..-. -......|-..-. .. . +..++.. + ..|-..-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 69988765 357889999999642 2334666643321 10 0 1112211 1 122222236
Q ss_pred EecccceEEEEecCCCC
Q 024559 239 VKPKRGDALLFWSMRPD 255 (266)
Q Consensus 239 V~Pk~G~aLlF~n~~~d 255 (266)
|.-+.|++|+|+|+..+
T Consensus 437 v~~~~gr~i~fPN~~qh 453 (501)
T PF14033_consen 437 VETKEGRLIAFPNTLQH 453 (501)
T ss_pred EEccCCcEEeccchhhh
Confidence 88899999999998754
No 48
>PHA02985 hypothetical protein; Provisional
Probab=37.96 E-value=1.2e+02 Score=27.71 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCc
Q 024559 140 DRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANAN 219 (266)
Q Consensus 140 d~lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~ 219 (266)
..+++.|++++.+- +-..+.+++..|+.|+.|..- ...++..+++-+..+..||..+-.+-..+
T Consensus 39 ~~I~~EI~~~i~E~----V~~~n~i~i~~f~~~~~~~~~------------~~~~~SkilICiqsAkkGG~iIi~~~~~~ 102 (271)
T PHA02985 39 KIILDEIEQYIDET----VLVKNLISIEVFNKKKKYYQN------------IPSRLSKIIICIQSAKKGGCIIIINNITN 102 (271)
T ss_pred hHHHHHHHHhcCCe----EEecceeEEEEEcCCcceEee------------CCCCceeEEEEEeecccCCEEEEeccccc
Confidence 46778888877432 224567899999988654321 13467899999999999999887442111
Q ss_pred ccccccccccccccCCCeEEecccceEEEEec
Q 024559 220 FTSVRWWNELSECGKQGLSVKPKRGDALLFWS 251 (266)
Q Consensus 220 ~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~n 251 (266)
..-.++|..|.|++--+
T Consensus 103 ---------------~K~ii~~~~n~aVlLSP 119 (271)
T PHA02985 103 ---------------NKKIITLNINHIIILSP 119 (271)
T ss_pred ---------------CceEEecCCCeEEEecc
Confidence 13467788888877543
No 49
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=37.78 E-value=1.2e+02 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.000 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
..-+.+++.+=++.+.++.+.+.++.
T Consensus 73 ~~GFf~l~nHGI~~~l~~~~~~~~~~ 98 (348)
T PLN00417 73 TWGVVQVMNHGITEAFLDKIYKLTKQ 98 (348)
T ss_pred HCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 44667788888899999999888753
No 50
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=37.66 E-value=1.5e+02 Score=27.81 Aligned_cols=59 Identities=32% Similarity=0.435 Sum_probs=40.1
Q ss_pred CCCccEEEEcCC------CCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCccccccccccccccc
Q 024559 160 HGEGIQVLHYEV------GQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECG 233 (266)
Q Consensus 160 ~~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~~c~ 233 (266)
.++.++++||.. ++.-+.|.|+.. +|+| +.| ..||=-+.+...
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~------------lTLl--~Qd-~~~GLqv~~~~g---------------- 220 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYGL------------LTLL--FQD-DVGGLEVRPPNG---------------- 220 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCCe------------EEEE--Eec-ccCCeEEecCCC----------------
Confidence 467899999983 344578888642 4555 333 456777776642
Q ss_pred CCCeEEecccceEEEEe
Q 024559 234 KQGLSVKPKRGDALLFW 250 (266)
Q Consensus 234 ~~~l~V~Pk~G~aLlF~ 250 (266)
+.+.|.|..|..||..
T Consensus 221 -~Wl~v~P~pgtlvVNi 236 (322)
T COG3491 221 -GWLDVPPIPGTLVVNI 236 (322)
T ss_pred -CeeECCCCCCeEEEeH
Confidence 3588899999888864
No 51
>PTZ00273 oxidase reductase; Provisional
Probab=37.48 E-value=1.6e+02 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.++...=++.+.++.+.+.++
T Consensus 37 Gff~v~nhgi~~~l~~~~~~~~~ 59 (320)
T PTZ00273 37 GFFYIVGHPIPQERIEKVLKMAK 59 (320)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
Confidence 44455555667777777666654
No 52
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=37.37 E-value=1.5e+02 Score=27.85 Aligned_cols=24 Identities=13% Similarity=-0.134 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+.+++.+=++.+..+.+.+.++
T Consensus 54 ~GFf~v~nHGi~~~l~~~~~~~~~ 77 (345)
T PLN02750 54 WGFFQVINHGVPSELRQRVEKVAK 77 (345)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHH
Confidence 345566667778888888888765
No 53
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=35.92 E-value=1.1e+02 Score=29.03 Aligned_cols=25 Identities=12% Similarity=-0.125 Sum_probs=19.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
.-+..++.+=++.+.++.+.+.++.
T Consensus 83 ~GFF~v~nHGi~~~l~~~~~~~~~~ 107 (361)
T PLN02758 83 WGFFQVINHGIELELLEEIEKVARE 107 (361)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3556677778899999999887753
No 54
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=35.79 E-value=1.5e+02 Score=27.94 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=20.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
..-+.+++.+-++.++++.+.+.++.
T Consensus 68 ~~GFf~v~nHGI~~~l~~~~~~~~~~ 93 (348)
T PLN02912 68 SYGFFQIKNHGVPEETIKKMMNVARE 93 (348)
T ss_pred HCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999988754
No 55
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=34.26 E-value=1.2e+02 Score=28.70 Aligned_cols=25 Identities=12% Similarity=-0.166 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 82 WEPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 82 ~~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
..-+.++..+=++.+.++.+.+.++
T Consensus 66 ~~GFf~v~nHGI~~~li~~~~~~~~ 90 (358)
T PLN02515 66 DWGIFQVVDHGVDANLVADMTRLAR 90 (358)
T ss_pred HCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3456677888889999999988775
No 56
>PLN02997 flavonol synthase
Probab=34.26 E-value=84 Score=29.32 Aligned_cols=24 Identities=13% Similarity=-0.141 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+.+++.+=++++..+.+.+.++
T Consensus 57 ~GFF~v~nHGI~~~li~~~~~~~~ 80 (325)
T PLN02997 57 WGVFQVVNHGIPTELMRQLQMVGK 80 (325)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Confidence 345666777789988888888764
No 57
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=34.25 E-value=40 Score=26.54 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 024559 23 MLFMLTIVLLMLLAMGIFYI 42 (266)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (266)
++.++++++||++++-|+.-
T Consensus 3 Ll~il~llLll~l~asl~~w 22 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAW 22 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666644
No 58
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=34.21 E-value=52 Score=28.46 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=20.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 024559 9 LQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYI 42 (266)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (266)
+.+|+++..-+.+..++|++++++++++..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~l~~ 36 (188)
T PRK13726 3 HGARLSTSRVMAIAFIFLSVLIVLSLSVNVIQGV 36 (188)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666555555555566666666766666654
No 59
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=32.26 E-value=1.7e+02 Score=27.31 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+.++...-++.+.++.+.+.++
T Consensus 39 ~GFf~l~nHGI~~~l~~~~~~~~~ 62 (332)
T PLN03002 39 CGFFYVINHGINEEFMDDVFEQSK 62 (332)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 345566667778888888877664
No 60
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=32.12 E-value=63 Score=24.46 Aligned_cols=17 Identities=12% Similarity=0.487 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024559 19 LVLSMLFMLTIVLLMLL 35 (266)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (266)
+.|++|+++.|+||++|
T Consensus 44 v~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 44 VSLAAFVVFLFLILLYM 60 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 61
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=30.27 E-value=54 Score=25.73 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 024559 23 MLFMLTIVLLMLLAMGI 39 (266)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (266)
+|+-++++++++++++|
T Consensus 70 L~~~~ti~lv~~~~~~I 86 (103)
T PF12955_consen 70 LFAGFTIALVVLVAGAI 86 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 62
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=30.27 E-value=32 Score=31.11 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=23.6
Q ss_pred cccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 176 DAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 176 ~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
.||.|..+... .-.+++|.-+.-+..||+|.|-+
T Consensus 95 ~wHtD~sy~~~------pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIET------PPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeC------CCceeEEEEEecCCCCCccHhhh
Confidence 49999876421 12267776677777999999954
No 63
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=29.73 E-value=44 Score=26.52 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=5.5
Q ss_pred HHHHHHHhhhhcc
Q 024559 30 VLLMLLAMGIFYI 42 (266)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (266)
+++++-++|+.++
T Consensus 18 l~~~~~~~~~~~l 30 (181)
T PF12729_consen 18 LLLIVGIVGLYSL 30 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 64
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.22 E-value=56 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=15.2
Q ss_pred cccchH-HHHHHHHHHHHHHHHHHHH
Q 024559 12 KKWSTL-TLVLSMLFMLTIVLLMLLA 36 (266)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 36 (266)
|..|++ |++|..+-++.|+++.+++
T Consensus 148 Rr~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 148 RRASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555 6666666666666666553
No 65
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=28.70 E-value=88 Score=30.06 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=24.6
Q ss_pred HhhhccCCCCCCCccEEEEcC-CCCcccccccccc
Q 024559 150 IADFTFIPMEHGEGIQVLHYE-VGQKYDAHYDYFL 183 (266)
Q Consensus 150 i~~~~glp~~~~E~lqv~rY~-~G~~y~~H~D~~~ 183 (266)
+..|-++|--....+-|. |. +||-|++|+|...
T Consensus 107 ~~~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YD 140 (383)
T COG2850 107 MEPFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYD 140 (383)
T ss_pred HHHhccCccccccceEEE-EecCCCccCccccchh
Confidence 335667887667777777 65 6999999999753
No 66
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=28.29 E-value=1.5e+02 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.741 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhccccCC
Q 024559 26 MLTIVLLMLLAMGIFYIPIGD 46 (266)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (266)
.++.++.++|+++++++.++.
T Consensus 30 vismimylilGi~L~yis~~~ 50 (54)
T PF04835_consen 30 VISMIMYLILGIALIYISSND 50 (54)
T ss_pred HHHHHHHHHHHHHHhhhccCc
Confidence 456677788888888886554
No 67
>PF14851 FAM176: FAM176 family
Probab=27.19 E-value=62 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccC
Q 024559 21 LSMLFMLTIVLLMLLAMGIFYIPIG 45 (266)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (266)
+.++|++++|+-+||.|.+|.+-.+
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4567777777777777776655433
No 68
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=26.88 E-value=74 Score=19.15 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=3.9
Q ss_pred ccccccccccchHHHHHHHHHH
Q 024559 5 RHSRLQAKKWSTLTLVLSMLFM 26 (266)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (266)
+..+...++..-+||+=.+..+
T Consensus 4 ~~~~~~~~~~~GFTLiEllVa~ 25 (31)
T PF13544_consen 4 RRRRRRRRRQRGFTLIELLVAM 25 (31)
T ss_dssp --------------HHHHHHHH
T ss_pred ccccccccccCCccHHHHHHHH
Confidence 3334444555556666544433
No 69
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=25.77 E-value=1.4e+02 Score=27.65 Aligned_cols=24 Identities=17% Similarity=-0.090 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+..++..=++++.++++.+.++
T Consensus 30 ~GFf~v~nHGI~~~l~~~~~~~~~ 53 (303)
T PLN02403 30 WGFFQVENHGIDKKLMEKVKQLVN 53 (303)
T ss_pred CceEEEECCCCCHHHHHHHHHHHH
Confidence 445667777778888888887664
No 70
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=23.78 E-value=3.9e+02 Score=25.03 Aligned_cols=24 Identities=13% Similarity=-0.276 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+..++.+=++.+.++.+.+.++
T Consensus 48 ~GFF~v~nHGI~~~li~~~~~~~~ 71 (335)
T PLN02156 48 FGFFKVINHGVRPDLLTQLEQEAI 71 (335)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Confidence 345566767778888888888765
No 71
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=23.74 E-value=2.9e+02 Score=26.14 Aligned_cols=25 Identities=4% Similarity=-0.261 Sum_probs=18.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAKP 107 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~~ 107 (266)
.-+..++..=++.+.++.+.+.++.
T Consensus 82 ~GFF~l~nHGI~~~li~~~~~~~~~ 106 (362)
T PLN02393 82 WGFFQVVNHGVRPELMDRAREAWRE 106 (362)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHH
Confidence 4556667777799999888887653
No 72
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.40 E-value=87 Score=24.04 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024559 16 TLTLVLSMLFMLTIVLLM 33 (266)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (266)
|-+++|+.|++.++||+.
T Consensus 3 SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred hhHHHHHHHHHHHHHHHH
No 73
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.10 E-value=95 Score=25.83 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 024559 28 TIVLLMLLAM 37 (266)
Q Consensus 28 ~~~~~~~~~~ 37 (266)
.++.|++.+|
T Consensus 21 ~~~~L~~~a~ 30 (148)
T PRK13254 21 LAVALVLYAL 30 (148)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 74
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=22.23 E-value=1.2e+02 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 024559 20 VLSMLFMLTIVLLMLLAMGIFY 41 (266)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~ 41 (266)
++.|.+.|.|++++.+++.+.+
T Consensus 12 v~GM~~VF~fL~lLi~~i~~~~ 33 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIYAVRGMG 33 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544
No 75
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=21.78 E-value=1.2e+02 Score=26.82 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=4.0
Q ss_pred Cccccc
Q 024559 1 MVKLRH 6 (266)
Q Consensus 1 ~~~~~~ 6 (266)
|+|.|+
T Consensus 1 M~~k~~ 6 (230)
T PRK06925 1 MERRKR 6 (230)
T ss_pred CCCCcc
Confidence 777664
No 76
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=21.61 E-value=77 Score=25.51 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 024559 23 MLFMLTIVLLMLLAMGIFY 41 (266)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (266)
+|+-++++||+.+|+|+-.
T Consensus 73 LlL~L~~CiLL~vaLglyC 91 (129)
T PF15555_consen 73 LLLRLCVCILLGVALGLYC 91 (129)
T ss_pred hhHHHHHHHHHHHHHHHHc
Confidence 4566788899999998763
No 77
>COG5393 Predicted membrane protein [Function unknown]
Probab=21.09 E-value=1.2e+02 Score=24.45 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024559 18 TLVLSMLFMLTIVLLML 34 (266)
Q Consensus 18 ~~~~~~~~~~~~~~~~~ 34 (266)
|+.|+.|.++++.+|++
T Consensus 57 tl~fa~~~lmsL~vLvi 73 (131)
T COG5393 57 TLLFAAFGLMSLMVLVI 73 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 78
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.05 E-value=1.4e+02 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.585 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024559 21 LSMLFMLTIVLLMLLAMGIF 40 (266)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ 40 (266)
+.|.+.|++++++.+++.++
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 79
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=20.83 E-value=90 Score=29.41 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=24.7
Q ss_pred cccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 174 KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
...+|.|...-+ ..--+++|.-+.-..+||+|.|-+
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeee
Confidence 456999975422 111256777777778999999966
No 80
>PF15240 Pro-rich: Proline-rich
Probab=20.56 E-value=49 Score=28.51 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=8.7
Q ss_pred HHHHHHhhhhccccC
Q 024559 31 LLMLLAMGIFYIPIG 45 (266)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (266)
|||||.+++|+|.++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 455566666666554
No 81
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.45 E-value=2.1e+02 Score=17.13 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024559 17 LTLVLSMLFMLTIVLLMLLA 36 (266)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (266)
++-++.+++.++|.++..+.
T Consensus 4 faWilG~~lA~~~~i~~a~w 23 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMW 23 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677788888777766554
No 82
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.34 E-value=91 Score=27.67 Aligned_cols=15 Identities=27% Similarity=0.036 Sum_probs=10.0
Q ss_pred HHHHHHHhhhccCCC
Q 024559 144 RGIEKRIADFTFIPM 158 (266)
Q Consensus 144 ~~I~~Ri~~~~glp~ 158 (266)
..+.+.|+..+|+|.
T Consensus 153 ~Em~~Ais~atgi~~ 167 (217)
T PF07423_consen 153 NEMLKAISYATGISE 167 (217)
T ss_pred HHHHHHHHHhhCCCh
Confidence 445566777788874
Done!