Query 024559
Match_columns 266
No_of_seqs 220 out of 1157
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 100.0 5.4E-48 1.9E-52 338.9 16.7 193 70-266 6-200 (224)
2 3itq_A Prolyl 4-hydroxylase, a 100.0 4.3E-44 1.5E-48 313.6 9.7 170 71-266 26-195 (216)
3 3dkq_A PKHD-type hydroxylase S 99.9 5.2E-26 1.8E-30 202.1 6.6 149 78-251 13-172 (243)
4 2hbt_A EGL nine homolog 1; pro 99.8 1.7E-19 5.7E-24 160.6 14.3 143 85-251 27-189 (247)
5 3kt7_A PKHD-type hydroxylase T 98.1 6.2E-06 2.1E-10 81.0 8.9 159 74-251 23-201 (633)
6 2rg4_A Uncharacterized protein 98.1 1.1E-05 3.6E-10 69.9 8.4 83 163-256 104-188 (216)
7 2rdq_A 1-deoxypentalenic acid 97.6 8.6E-05 2.9E-09 65.7 6.2 78 172-254 134-228 (288)
8 2fct_A Syringomycin biosynthes 97.5 0.00042 1.4E-08 62.1 9.4 123 86-213 23-163 (313)
9 2a1x_A Phytanoyl-COA dioxygena 97.5 0.00082 2.8E-08 60.1 11.0 161 86-252 36-231 (308)
10 3emr_A ECTD; double stranded b 97.2 0.00023 7.7E-09 64.6 3.8 126 78-214 41-183 (310)
11 2opw_A Phyhd1 protein; double- 96.9 0.002 6.9E-08 56.9 7.9 77 172-253 150-244 (291)
12 3gja_A CYTC3; halogenase, beta 96.5 0.0087 3E-07 54.2 8.5 122 86-214 25-166 (319)
13 2iuw_A Alkylated repair protei 95.7 0.12 4E-06 45.0 11.6 158 70-250 25-200 (238)
14 3tht_A Alkylated DNA repair pr 95.2 0.2 6.9E-06 46.0 11.9 137 81-249 108-258 (345)
15 3s57_A Alpha-ketoglutarate-dep 94.9 0.43 1.5E-05 40.3 12.6 151 79-250 5-173 (204)
16 3i3q_A Alpha-ketoglutarate-dep 92.3 1.1 3.8E-05 38.1 10.5 85 142-250 85-169 (211)
17 3nnf_A CURA; non-HAEM Fe(II)/a 77.2 4.1 0.00014 36.9 6.0 129 83-215 40-177 (344)
18 1w9y_A 1-aminocyclopropane-1-c 51.1 28 0.00097 30.9 6.3 23 84-106 32-54 (319)
19 3oox_A Putative 2OG-Fe(II) oxy 47.9 44 0.0015 29.4 7.1 23 84-106 34-56 (312)
20 1dcs_A Deacetoxycephalosporin 36.0 54 0.0018 28.9 5.6 24 83-106 29-52 (311)
21 1gp6_A Leucoanthocyanidin diox 36.0 77 0.0026 28.4 6.8 24 83-106 77-100 (356)
22 1otj_A Alpha-ketoglutarate-dep 31.5 33 0.0011 29.3 3.4 36 175-216 96-131 (283)
23 3pvj_A Alpha-ketoglutarate-dep 30.4 29 0.00098 30.1 2.8 37 173-215 92-128 (277)
24 1odm_A Isopenicillin N synthas 29.8 79 0.0027 28.0 5.7 29 142-170 152-190 (331)
25 1o51_A Hypothetical protein TM 28.8 46 0.0016 25.2 3.4 73 97-169 31-113 (114)
26 1oih_A Putative alkylsulfatase 28.3 35 0.0012 29.6 3.1 38 172-215 102-139 (301)
27 1iij_A ERBB-2 receptor protein 25.1 47 0.0016 20.1 2.2 7 18-24 8-14 (35)
28 1nx8_A CARC, carbapenem syntha 24.6 43 0.0015 28.4 2.8 38 173-216 96-135 (273)
29 3r1j_A Alpha-ketoglutarate-dep 23.9 45 0.0015 29.3 2.9 37 173-215 98-134 (301)
30 2q4a_A Clavaminate synthase-li 23.7 34 0.0012 30.1 2.1 39 171-215 113-151 (330)
31 2kse_A Sensor protein QSEC; me 22.6 82 0.0028 23.8 4.0 8 1-8 1-8 (186)
32 3on7_A Oxidoreductase, iron/as 22.0 1.2E+02 0.004 26.2 5.2 23 84-106 26-48 (280)
33 2wbq_A L-arginine beta-hydroxy 21.1 60 0.0021 28.9 3.2 37 173-216 163-199 (358)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=100.00 E-value=5.4e-48 Score=338.91 Aligned_cols=193 Identities=53% Similarity=0.949 Sum_probs=175.5
Q ss_pred cccCCeeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHH
Q 024559 70 EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKR 149 (266)
Q Consensus 70 ~~~~~~~vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~R 149 (266)
.++.+.|+|+||++|+|++++||||++||++||+++++.+.++++++..+|....+.+|+|+.+|++...++++++|++|
T Consensus 6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~r 85 (224)
T 2jig_A 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKR 85 (224)
T ss_dssp -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHH
T ss_pred ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999998777777788999999999998678999999999
Q ss_pred HhhhccCCCCCCCccEEEEcCCCCccccccccccccccc--CCCCceEEEEEEeccccCCCcceeccCCCCccccccccc
Q 024559 150 IADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWN 227 (266)
Q Consensus 150 i~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~ 227 (266)
|.+++++|...+|++||+||++||+|++|+|++....+. ..+++|++|+++||||+++||||+||.... .+.|+
T Consensus 86 i~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~----~~~~~ 161 (224)
T 2jig_A 86 VAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQ----KVTGD 161 (224)
T ss_dssp HHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSS----CCCST
T ss_pred HHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccc----ccccc
Confidence 999999999999999999999999999999998753221 346799999999999999999999998752 35678
Q ss_pred ccccccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559 228 ELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR 266 (266)
Q Consensus 228 ~l~~c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG 266 (266)
.+++|.+.+++|+|++|+||||+|+++||++|++++|+|
T Consensus 162 ~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~ 200 (224)
T 2jig_A 162 GWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGS 200 (224)
T ss_dssp TSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEE
T ss_pred cccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccC
Confidence 899999889999999999999999999999999999986
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=100.00 E-value=4.3e-44 Score=313.65 Aligned_cols=170 Identities=44% Similarity=0.694 Sum_probs=149.2
Q ss_pred ccCCeeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHHH
Q 024559 71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI 150 (266)
Q Consensus 71 ~~~~~~vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri 150 (266)
+....++++++++|+|++++||||++||++||+++++.+.+|++... ...+++|+|+++|++. ++++++|++||
T Consensus 26 ~~r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~--~~~v~~i~~Ri 99 (216)
T 3itq_A 26 EDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD--NELTAKIEKRI 99 (216)
T ss_dssp SSCEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC--CHHHHHHHHHH
T ss_pred CCceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC--cHHHHHHHHHH
Confidence 45678999999999999999999999999999999998988887221 3567899999999987 78999999999
Q ss_pred hhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccc
Q 024559 151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELS 230 (266)
Q Consensus 151 ~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~ 230 (266)
++++|+|.+.+|.+||+||++||+|++|+|++.... ....++|++|+++||||+++||+|+||..
T Consensus 100 ~~~~gl~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~-~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~-------------- 164 (216)
T 3itq_A 100 SSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHS-RSAANNRISTLVMYLNDVEEGGETFFPKL-------------- 164 (216)
T ss_dssp HHHHTSCGGGBCCCEEEEECBTCCEEEECSSCCTTS-GGGGGCEEEEEEEECSCCSEECCEEETTT--------------
T ss_pred HHhcCceeccccceeEEEeCCCCccccccCCCcCCC-cccCCceEEEEEEecccCCcCceeEecCC--------------
Confidence 999999999999999999999999999999987531 12358999999999999999999999975
Q ss_pred cccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559 231 ECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR 266 (266)
Q Consensus 231 ~c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG 266 (266)
+++|+|++|+||+|+|+++||++|++++|+|
T Consensus 165 -----~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~ 195 (216)
T 3itq_A 165 -----NLSVHPRKGMAVYFEYFYQDQSLNELTLHGG 195 (216)
T ss_dssp -----TEEECCCTTCEEEEECCCSSHHHHHTTCEEE
T ss_pred -----CCEEecCCCeEEEEeccCCCCCCCCcccccc
Confidence 6899999999999999999999999999986
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.92 E-value=5.2e-26 Score=202.08 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=113.7
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhcCC-CccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHHHhhhccC
Q 024559 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPY-MVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFI 156 (266)
Q Consensus 78 E~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~-l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri~~~~gl 156 (266)
|-+-.++.+++|+||||++||++||+++++. +.++.+ ++......+|++. |+.. ++++++.|++||.++++.
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~----t~g~~~~~vr~n~--~l~~-d~~~~~~l~~~i~~~l~~ 85 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQ----TSGAMATTRKRNQ--QLDK-DDPVAVALGQQIMDRLLA 85 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECC----CSSBSSCCCEEEE--ECCT-TCHHHHHHHHHHHHHHHT
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCcc----cCCCccccceeee--EECC-CCHHHHHHHHHHHHHHcc
Confidence 4466788999999999999999999999753 433332 2223456677664 5553 468999999999988765
Q ss_pred C--------CCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccc--cCCCcceeccCCCCcccccccc
Q 024559 157 P--------MEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSD--VEEGGETVFPAANANFTSVRWW 226 (266)
Q Consensus 157 p--------~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND--v~eGGeT~Fp~~~~~~s~~~~~ 226 (266)
. ....|++||+||++|++|++|+|.+..... ..+.+|.+|+++|||| +++||||+|+...
T Consensus 86 ~~~f~~~~L~~~~e~~~~~rY~~G~~y~~H~D~~~~~~~-~~~~~r~~T~~lYLndp~~~~GGetvf~~~~--------- 155 (243)
T 3dkq_A 86 HPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTP-DGMIRTDLSATLFLSEPENYQGGELVIQDTY--------- 155 (243)
T ss_dssp CHHHHHHHCEEEEEEEEEEEECTTCEEEEECBCSEEEET-TEEEECCEEEEEECSCGGGEEECCEEEEETT---------
T ss_pred CcchhhcccccccccceEEEECCCCeeccCCCCCCCCCC-CccccceEEEEEEeCCCCCCCCceEEEeeCC---------
Confidence 4 134678999999999999999999864310 0124689999999999 6799999999753
Q ss_pred cccccccCCCeEEecccceEEEEec
Q 024559 227 NELSECGKQGLSVKPKRGDALLFWS 251 (266)
Q Consensus 227 ~~l~~c~~~~l~V~Pk~G~aLlF~n 251 (266)
....|+|++|+||+|++
T Consensus 156 --------~~~~V~P~~G~~v~F~s 172 (243)
T 3dkq_A 156 --------GQQSIKLSAGSLVLYPS 172 (243)
T ss_dssp --------EEEEECCCTTCEEEEET
T ss_pred --------CcEEEecCCCEEEEECC
Confidence 24789999999999975
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=99.81 E-value=1.7e-19 Score=160.55 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=103.1
Q ss_pred CEEEEcCCCCHHHHHHHHHHhcC-----CCccceeeeCCCCCccccceeeccceeecCCch--H----HHHHHHHHHhhh
Q 024559 85 RAFVYHNFLSKAECEYLIDLAKP-----YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQD--R----IIRGIEKRIADF 153 (266)
Q Consensus 85 ~i~vi~nfLS~~EC~~Li~~a~~-----~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d--~----lv~~I~~Ri~~~ 153 (266)
.+++++|||+++||+.|++.++. .+.++.+... .......+|++..+|++.... + +.+.+.+.+..+
T Consensus 27 g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~l 104 (247)
T 2hbt_A 27 GICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHC 104 (247)
T ss_dssp SEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999874 3667766552 234567899999999987431 2 334444433332
Q ss_pred cc-CCCC---CCCccEEEEcCC-CCcccccccccccccccCCCCceEEEEEEecccc----CCCcceeccCCCCcccccc
Q 024559 154 TF-IPME---HGEGIQVLHYEV-GQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDV----EEGGETVFPAANANFTSVR 224 (266)
Q Consensus 154 ~g-lp~~---~~E~lqv~rY~~-G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv----~eGGeT~Fp~~~~~~s~~~ 224 (266)
.. +... ..+.+|+.+|.+ |++|.+|.|... +.+|.+|+++|||+. +.||+|.|.....
T Consensus 105 n~~lGl~~i~~~~e~~~~~Y~~~G~~y~~H~D~~~-------~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~------ 171 (247)
T 2hbt_A 105 NGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPN-------GDGRCVTCIYYLNKDWDAKVSGGILRIFPEGK------ 171 (247)
T ss_dssp TTTSTTCCEEEECCEEEEEECSSSCCEEEECSSCS-------CCSEEEEEEEECBTTCCHHHHBCCEEECCTTC------
T ss_pred hhhcCcccccccceEEEEEecCCCCcccccccCCC-------CCCceEEEEEEeCCCCCCCCCceeEEEecCCC------
Confidence 22 1111 135699999996 999999999831 357999999999994 5699998654321
Q ss_pred cccccccccCCCeEEecccceEEEEec
Q 024559 225 WWNELSECGKQGLSVKPKRGDALLFWS 251 (266)
Q Consensus 225 ~~~~l~~c~~~~l~V~Pk~G~aLlF~n 251 (266)
.....|.|+.|++|+|.+
T Consensus 172 ---------~~~~~v~P~~grlv~F~s 189 (247)
T 2hbt_A 172 ---------AQFADIEPKFDRLLFFWS 189 (247)
T ss_dssp ---------SSCEEECCBTTEEEEEEC
T ss_pred ---------CceEEEEcCCCEEEEEec
Confidence 124789999999999986
No 5
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=98.12 E-value=6.2e-06 Score=80.98 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=91.9
Q ss_pred CeeEEEeecCCC-EEEEcCCCCHHHHHHHHHHhcCC--Cccce--eee-CCCCCccccceeeccc-eeecCCchHHH---
Q 024559 74 EQWTEIVAWEPR-AFVYHNFLSKAECEYLIDLAKPY--MVKST--VVD-SKTGQSKDSRVRTSSG-TFLKRGQDRII--- 143 (266)
Q Consensus 74 ~~~vE~ls~~P~-i~vi~nfLS~~EC~~Li~~a~~~--l~~s~--v~~-~~~g~~~~~~~Rts~~-~~l~~~~d~lv--- 143 (266)
.++-+..+.+|+ -++++|||.++..+.+.+.+... +.+.. +.. ..+|.-........+. ..++. -..+.
T Consensus 23 ~lk~~y~~s~PFpH~VIdnfl~d~lle~V~~Efp~~i~f~~KetDlYk~~QsgdLanl~~l~~e~l~~lp~-l~~Lr~~L 101 (633)
T 3kt7_A 23 GLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLANLSGLDWDDLSRLPN-LFKLRQIL 101 (633)
T ss_dssp HHHHHHHTCSSSCCEEESSCBCHHHHHHHHHHHHHHCCCEEEECSSEEEEECCCTTCTTSCCTTCCTTCHH-HHHHHHHH
T ss_pred HHHhhhhcCCCcceEEECCCCCHHHHHHHHHHhhhccCcccccccccceeccccccccccCChhhhccChH-HHHHHHHH
Confidence 334444566776 67899999998888888876422 21100 000 0011100000000000 00000 01121
Q ss_pred --HHHHHHHhhhccC-CCC-CCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEecccc------CCCcceec
Q 024559 144 --RGIEKRIADFTFI-PME-HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDV------EEGGETVF 213 (266)
Q Consensus 144 --~~I~~Ri~~~~gl-p~~-~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv------~eGGeT~F 213 (266)
..+..-++.++|+ ++. ..-.+++.+|.+|.+|.+|.|.+ +.|.+|+++|||+. +.||++.+
T Consensus 102 ~S~~Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~fL~~H~D~~---------~~RrvS~VLYLN~pd~~W~~e~GGeL~L 172 (633)
T 3kt7_A 102 YSKQYRDFFGYVTKAGKLSGSKTDMSINTYTKGCHLLTHDDVI---------GSRRISFILYLPDPDRKWKSHYGGGLRL 172 (633)
T ss_dssp TSHHHHHHHHHHHTCCCCCSSCCCEEEEEECTTCEEEEECCCC---------TTEEEEEEEECSCTTSCCCGGGBCCEEE
T ss_pred hcHHHHHHHHHHhCCcccCCCceeEEEEEeCCCCeeeecCCCC---------CCeEEEEEEEcCCCCCCCCccCCceEEE
Confidence 2344556677888 443 23458999999999999999953 34999999999983 37999998
Q ss_pred cCCCCcccccccccccccccCCCeEEecccceEEEEec
Q 024559 214 PAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWS 251 (266)
Q Consensus 214 p~~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~n 251 (266)
.....+. .| . ......|.|+-|+++||..
T Consensus 173 yd~d~~~--~P----~---~d~~~~I~P~fNrLV~F~v 201 (633)
T 3kt7_A 173 FPSILPN--VP----H---SDPSAKLVPQFNQIAFFKV 201 (633)
T ss_dssp CCEEETT--EE----C---SSCSEEECCCTTEEEEEEC
T ss_pred ecCCCcC--CC----C---CCceEEEecCCCeEEEEEc
Confidence 7642100 00 0 0124689999999999965
No 6
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=98.07 E-value=1.1e-05 Score=69.90 Aligned_cols=83 Identities=19% Similarity=0.109 Sum_probs=55.5
Q ss_pred ccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCccc-cccccc-ccccccCCCeEEe
Q 024559 163 GIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFT-SVRWWN-ELSECGKQGLSVK 240 (266)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s-~~~~~~-~l~~c~~~~l~V~ 240 (266)
..-+.+|.+|+++++|.+. ++.+|.++|||.++.||++.|........ ..|... +...-......|+
T Consensus 104 ~~W~~~~~~G~~~~~H~H~-----------~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~ 172 (216)
T 2rg4_A 104 DIWINILPEGGVHGSHIHP-----------HSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVA 172 (216)
T ss_dssp EEEEEEECTTCCEEEECCT-----------TCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEEC
T ss_pred eEEEEEcCCCCcccCccCC-----------CCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEec
Confidence 4567889999999999872 47899999999998999999976421100 000000 0000001124899
Q ss_pred cccceEEEEecCCCCC
Q 024559 241 PKRGDALLFWSMRPDA 256 (266)
Q Consensus 241 Pk~G~aLlF~n~~~dG 256 (266)
|+.|++|+|++-..++
T Consensus 173 P~~G~lvlFpS~l~H~ 188 (216)
T 2rg4_A 173 PKVGDVLLWESWLRHE 188 (216)
T ss_dssp CCTTEEEEEETTSCEE
T ss_pred CCCCeEEEECCCCEEe
Confidence 9999999998866543
No 7
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=97.58 E-value=8.6e-05 Score=65.72 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=44.8
Q ss_pred CCcccccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCcccccccc------------cccc-c-c-cC
Q 024559 172 GQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANFTSVRWW------------NELS-E-C-GK 234 (266)
Q Consensus 172 G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~s~~~~~------------~~l~-~-c-~~ 234 (266)
|....||.|.... ....+.+|+.|+|.|+. +.|.|.| |...........+ ..+. + . ..
T Consensus 134 g~~~~wHqD~~~~-----~~~~~~v~~wiaL~d~~~enG~l~vvPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (288)
T 2rdq_A 134 HYLTPFHQDGFYI-----GPNQDFRTFWIPLIRTTRESGGVALADGSHRRGKRDHVLNESFRRFGHPVRGIPPTEVSEDE 208 (288)
T ss_dssp TTSCCSBCHHHHS-----CSCCCCEEEEEESSCCCTTTCEEEEETTTTSSCCCCCEEEEEEEETTEEEEECCGGGSCTTS
T ss_pred CCCcCcccccccc-----CCCCCeEEEEEECCCCCccCCcEEEEeCCccccccccccchhhhccCcccccCCCccccccC
Confidence 4567899998542 12347899999999985 5677766 4432111000000 0000 0 0 11
Q ss_pred CCeEEecccceEEEEecCCC
Q 024559 235 QGLSVKPKRGDALLFWSMRP 254 (266)
Q Consensus 235 ~~l~V~Pk~G~aLlF~n~~~ 254 (266)
..+.+.-++|++|||....-
T Consensus 209 ~~v~~~~~aGdv~lf~~~~~ 228 (288)
T 2rdq_A 209 HLLHSPMEPGDILLFHAHMC 228 (288)
T ss_dssp CEECCCCCTTCEEEEETTCC
T ss_pred ceeecccCCCCEEEEeCCce
Confidence 23567779999999975443
No 8
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=97.48 E-value=0.00042 Score=62.10 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=59.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCcc--ceeeeCCCCCcccc-ceeeccceeecCCchHHH------HHHHHHHhhhccC
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPYMVK--STVVDSKTGQSKDS-RVRTSSGTFLKRGQDRII------RGIEKRIADFTFI 156 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~l~~--s~v~~~~~g~~~~~-~~Rts~~~~l~~~~d~lv------~~I~~Ri~~~~gl 156 (266)
.++++++|+++||+.+.+.....+.. ..+... +..... ..|.....+. .++.+ ..|...++.++|-
T Consensus 23 yvvl~~~l~~e~v~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~l~~~~~~llG~ 97 (313)
T 2fct_A 23 FIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQD--LDAISGGTNIANYDRHL---DDDFLASHICRPEICDRVESILGP 97 (313)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTCCTTCSCCC--CCC----CGGGGBCGGG---TCHHHHHHTTCHHHHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhccccccccc--ccccCCccchhcccccc---ccHHHHHHHcChHHHHHHHHHcCC
Confidence 56899999999999998766432211 111110 000000 0111110011 11222 2344555666663
Q ss_pred CCCCCCccEEEEcCCCCccccccccccccccc------CCCCc--eEEEEEEeccccC-CCcceec
Q 024559 157 PMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT------KNGGQ--RMATLLMYLSDVE-EGGETVF 213 (266)
Q Consensus 157 p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~------~~~~~--R~~T~liYLNDv~-eGGeT~F 213 (266)
++......-+.+...++...||.|...-.... ..... +.+|+.++|.|+. +.|.|.|
T Consensus 98 ~~~~~~~~~~~k~Pg~~~~~wHqD~~~~~~~g~p~~~~p~~~~~~~~l~~wiaL~D~~~enG~l~~ 163 (313)
T 2fct_A 98 NVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQF 163 (313)
T ss_dssp CEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEE
T ss_pred CeEeeeeeEEEeCCCCCCCCccccccccccCCCccccccccccccCeEEEEEEeccCCccCCCEEE
Confidence 22111111223333334568999975311000 00001 6899999999985 5677777
No 9
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=97.45 E-value=0.00082 Score=60.12 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=75.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCccc------eeeeCC-CCCcc-ccceeeccc--eeecCCchHHH------HHHHHH
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPYMVKS------TVVDSK-TGQSK-DSRVRTSSG--TFLKRGQDRII------RGIEKR 149 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~l~~s------~v~~~~-~g~~~-~~~~Rts~~--~~l~~~~d~lv------~~I~~R 149 (266)
.+++++||+++||+.|.+..+..+... ...... .++.. ....+.-.. .|. .++.+ ..|.+.
T Consensus 36 yvvl~~~l~~e~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~l~~~ 112 (308)
T 2a1x_A 36 FLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQ---EDKELFRYCTLPEILKY 112 (308)
T ss_dssp EEEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCT---TSHHHHHHHHCHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHHHHHhccccCCCccccccccccccccCchHHHHhhhhhhh---hCHHHHHHHhCHHHHHH
Confidence 468999999999999998876422110 000000 00000 000010001 121 12322 234455
Q ss_pred HhhhccCCCCCCCccEEEEcCC-CCc---ccccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCccc--
Q 024559 150 IADFTFIPMEHGEGIQVLHYEV-GQK---YDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANFT-- 221 (266)
Q Consensus 150 i~~~~glp~~~~E~lqv~rY~~-G~~---y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~s-- 221 (266)
++++.|-++......-+.+... |+. ..||.|...-. .....+.+|+.++|.|+. ++|.|.| |.......
T Consensus 113 ~~~llG~~~~~~~~~~~~k~P~~g~~~~~~~wHqD~~~~~---~~p~~~~v~~wiaL~D~~~enG~l~~vPGSH~~~~~~ 189 (308)
T 2a1x_A 113 VECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKP 189 (308)
T ss_dssp HHHHHCSSEEEEEEEEEEECCC--------CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCC
T ss_pred HHHhcCCCcceecceEEEcCCCCCCCccCCCCccCCcccc---CCCCCCeEEEEEEeeccCCCCCcEEEEcCCCCCcccc
Confidence 5566663322111112233322 332 47999974311 111247899999999985 5677877 43211000
Q ss_pred -cccccc--------ccccc--cCCCeEEecccceEEEEecC
Q 024559 222 -SVRWWN--------ELSEC--GKQGLSVKPKRGDALLFWSM 252 (266)
Q Consensus 222 -~~~~~~--------~l~~c--~~~~l~V~Pk~G~aLlF~n~ 252 (266)
.-+.|. .+.+. ....+.+.-++|+++||...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~aGd~vlf~~~ 231 (308)
T 2a1x_A 190 HDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPL 231 (308)
T ss_dssp CCC-----------CCCCC-CCCSCCEEECBCTTCEEEECTT
T ss_pred ccccccccCccccccCCccccccCCeEEccCCCccEEEECCC
Confidence 001121 11111 12457888899999999543
No 10
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=97.16 E-value=0.00023 Score=64.57 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=64.2
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccc-------eeeeCCCCCccccceeeccceeecCCchHHHH------
Q 024559 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKS-------TVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIR------ 144 (266)
Q Consensus 78 E~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s-------~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~------ 144 (266)
+.+..+-+ ++++++|+++||+.|.+..+..+... .+... .| ..+|.-...+. .++.+.
T Consensus 41 ~~f~~dGy-vvi~~~ls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~-~~----~~~r~~~~~~~---~~~~f~~l~~~p 111 (310)
T 3emr_A 41 DSYEKNGF-LQIKNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREP-ES----NDIRSIFHVHQ---DDNYFQDVANDK 111 (310)
T ss_dssp HHHHHHSE-EEETTCSCHHHHHHHHHHHHHHHHHTTTCCCTTEEECT-TT----CCEEEEECHHH---HCHHHHHHHTCH
T ss_pred HHHHhCCE-EEccCCCCHHHHHHHHHHHHHHHhcccccCCccceecC-CC----cceeEEeehhh---ccHHHHHHHhCh
Confidence 33444454 68999999999999998876432211 11110 01 11222111111 123332
Q ss_pred HHHHHHhhhccCCCCCCCccEEEEcC---CCCcccccccccccccccCCCCceEEEEEEeccccC-CCcceecc
Q 024559 145 GIEKRIADFTFIPMEHGEGIQVLHYE---VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVFP 214 (266)
Q Consensus 145 ~I~~Ri~~~~glp~~~~E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~Fp 214 (266)
+|...++.+.|-++...- -+ +.+. .|+...||.|...-.........+.+|+.++|.|+. +.|.|.|-
T Consensus 112 ~l~~i~~~llG~~~~l~~-s~-~~~k~p~~g~~~~wHqD~~~~~~~~g~P~~~~v~~wiaL~D~t~enG~l~vi 183 (310)
T 3emr_A 112 RILDIVRHLLGSDVYVHQ-SR-INYKPGFKGKEFDWHSDFETWHVEDGMPRMRAISVSIALSDNYSFNGPLMLI 183 (310)
T ss_dssp HHHHHHHHHHTSCEEEEE-EE-EECCCTTCCCCEEEECHHHHHHHHHCCCSSCEEEEEEESSCBCSSSCCCEEC
T ss_pred HHHHHHHHHcCCceEEEe-eE-EEEcCCCCCCCCCcCCCCccccccCCCcccceEEEEEEecCCCCcCCCEEEE
Confidence 333444555553221110 01 1232 256789999964311000012257899999999985 56777763
No 11
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=96.95 E-value=0.002 Score=56.93 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCcccccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCcccc-----c-----cc--cc----cccccc
Q 024559 172 GQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANFTS-----V-----RW--WN----ELSECG 233 (266)
Q Consensus 172 G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~s~-----~-----~~--~~----~l~~c~ 233 (266)
|+...||.|...-. .....+.+|+.++|.|+. ++|.|.| |........ . +. +. ++. .
T Consensus 150 ~~~~~wHqD~~~~~---~~p~~~~~~~wi~L~d~~~~nG~l~~vPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 224 (291)
T 2opw_A 150 GGEVSPHQDASFLY---TEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARD--N 224 (291)
T ss_dssp BCCEEEECGGGTSC---EESSSCEEEEEEESSCBCTTTTCEEEETTCSSSCCSEEEEECC----CCEEEEECCCCCC--G
T ss_pred CCCcCCeeCCcccc---cCCCCceEEEEEEcccCCCCCCCEEEECCccCCCcccccccCCCCCCCcceeeccccCCC--c
Confidence 45689999975421 111237899999999986 5677777 433211000 0 00 00 011 1
Q ss_pred CCCeEEecccceEEEEecCC
Q 024559 234 KQGLSVKPKRGDALLFWSMR 253 (266)
Q Consensus 234 ~~~l~V~Pk~G~aLlF~n~~ 253 (266)
...+.+.-++|++|||....
T Consensus 225 ~~~v~~~~~aGd~~~f~~~~ 244 (291)
T 2opw_A 225 SLFVPTPVQRGALVLIHGEV 244 (291)
T ss_dssp GGCEEECBCTTCEEEEETTC
T ss_pred CCeeecccCCCcEEEEcCCc
Confidence 24578899999999996543
No 12
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=96.46 E-value=0.0087 Score=54.22 Aligned_cols=122 Identities=8% Similarity=0.029 Sum_probs=59.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCcc--ceeeeCCCCCccccceeeccceeecCCchHHH------HHHHHHHhhhccCC
Q 024559 86 AFVYHNFLSKAECEYLIDLAKPYMVK--STVVDSKTGQSKDSRVRTSSGTFLKRGQDRII------RGIEKRIADFTFIP 157 (266)
Q Consensus 86 i~vi~nfLS~~EC~~Li~~a~~~l~~--s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv------~~I~~Ri~~~~glp 157 (266)
.++++++|+++||+.+.+..+..+.. ..+.....|. ..|..-..+. .++.+ ..|...+++++|-+
T Consensus 25 yv~i~~~l~~~~v~~l~~~i~~~l~~~~~~~~~~~~g~----~~~~~~~~~~---~~~~f~~l~~~p~l~~~~~~llG~~ 97 (319)
T 3gja_A 25 YIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGK----ANISNYDRHL---DIDLLAEHIMRPEIVDRVGSLIGRN 97 (319)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHHCCTTCSSCSCSSH----HHHTTTTGGG---TCHHHHHHHHCHHHHHHHHHHHCSS
T ss_pred EEECcCCCCHHHHHHHHHHHHHHhhcCccccccCCCcc----chhhhhhhcc---cCHHHHHHHcChHHHHHHHHHcCCc
Confidence 46889999999999998887653211 1111110111 1221111111 12222 23444555666633
Q ss_pred CCCCCccEEEEcCCCCccccccccccccccc------CCCC--c---eEEEEEEeccccC-CCcceecc
Q 024559 158 MEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT------KNGG--Q---RMATLLMYLSDVE-EGGETVFP 214 (266)
Q Consensus 158 ~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~------~~~~--~---R~~T~liYLNDv~-eGGeT~Fp 214 (266)
+-..-..-+.++..++...||.|...-.... .... . +.+|+.++|.|+. +.|.|.|-
T Consensus 98 ~~~~~s~~~~k~Pg~~~~~wHqD~~y~~~~g~p~~~~P~~~~~p~~~~~v~~wiaL~d~t~enG~l~vv 166 (319)
T 3gja_A 98 LLCWRSEFFPKYQGDEGTDWHQAATFAHATGKPQIIWPSDEGRPAFIGTITVWTAFTHSTEQNGCLQLM 166 (319)
T ss_dssp EEEEEEEEEEECTTCCCEEEEEECCBCTTTCCBSEECCCCSSSCEECCCEEEEEESSCBCTTTTCEEEC
T ss_pred eEEeeeeEeecCCCCCCCCcccCCcccccCCCccccCccccccccccceEEEEEEeccCCCcCcCEEEE
Confidence 2111111233343333479999964321000 0010 1 3599999999985 55777763
No 13
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=95.69 E-value=0.12 Score=44.98 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=83.5
Q ss_pred cccCCeeEEEeecC-CCEEEEcCCCCHHHHHHHHHHhcC--CCccceeeeCCCCCccccceeeccceeecC---------
Q 024559 70 EEKGEQWTEIVAWE-PRAFVYHNFLSKAECEYLIDLAKP--YMVKSTVVDSKTGQSKDSRVRTSSGTFLKR--------- 137 (266)
Q Consensus 70 ~~~~~~~vE~ls~~-P~i~vi~nfLS~~EC~~Li~~a~~--~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~--------- 137 (266)
++++...+..+... |.+.++++||+++|.+.|++.... .+....... -|+.... .|. .+|+..
T Consensus 25 ~~~g~~~~~~~p~~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~-~R~--~~~~g~~~Y~Ys~~~ 99 (238)
T 2iuw_A 25 DREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQ-PRL--TAWYGELPYTYSRIT 99 (238)
T ss_dssp CSSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEEC-SSE--EEEEECCCTTSCHHH
T ss_pred cCCcceeeecCCCCCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCccccc-CCe--eEEcCCCccccCCcc
Confidence 34555444433221 359999999999999999987632 232222110 1221111 111 123321
Q ss_pred -----CchHHHHHHHHHHhhhccCCCCCCCccEEEEcCCCC-cccccccccccccccCCCCceEEEEEEeccccCCCcce
Q 024559 138 -----GQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQ-KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGET 211 (266)
Q Consensus 138 -----~~d~lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT 211 (266)
.-.+.+..|.+++.++.+.+ .+..-+..|..|+ .-.+|.|.... + ..+..++|+-+ |+..
T Consensus 100 ~~~~p~wp~~l~~l~~~~~~~~g~~---~n~~LvN~Y~~G~d~i~~H~D~~~~-~---~~~~~IaslSL-------G~~~ 165 (238)
T 2iuw_A 100 MEPNPHWHPVLRTLKNRIEENTGHT---FNSLLCNLYRNEKDSVDWHSDDEPS-L---GRCPIIASLSF-------GATR 165 (238)
T ss_dssp HCCBSSCCHHHHHHHHHHHHHHSCC---CCEEEEEEECSTTCCEEEECCCCGG-G---CSSCCEEEEEE-------ESCE
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCC---CCEEEEEEECCCCCceeCCcCChhh-c---CCCCcEEEEEC-------CCCE
Confidence 01245667778887776643 3457888999997 99999996331 1 11346666654 4555
Q ss_pred eccCCCCcccccccccccccccCCCeEEecccceEEEEe
Q 024559 212 VFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFW 250 (266)
Q Consensus 212 ~Fp~~~~~~s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~ 250 (266)
+|-.-........ . ..+....+.|.-..|++|++.
T Consensus 166 ~f~f~~~~~~~~~--~--~~~~~~~~~i~L~~gsllvM~ 200 (238)
T 2iuw_A 166 TFEMRKKPPPEEN--G--DYTYVERVKIPLDHGTLLIME 200 (238)
T ss_dssp EEEEEECCC------------CCCEEEEEECTTCEEEEE
T ss_pred EEEEeccCCcccc--C--cccCCceEEEEcCCCCEEEEC
Confidence 5532110000000 0 000013467888888888874
No 14
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.17 E-value=0.2 Score=45.99 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=69.7
Q ss_pred ecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCcccc---------ceeecccee-----ecCCchHHHHHH
Q 024559 81 AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDS---------RVRTSSGTF-----LKRGQDRIIRGI 146 (266)
Q Consensus 81 s~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~---------~~Rts~~~~-----l~~~~d~lv~~I 146 (266)
+.-|-+++++||||++|.+.|++...-.-.+..+. |....+ .++-+.... ++..-.+.+..|
T Consensus 108 ~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~----~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l 183 (345)
T 3tht_A 108 ALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQN----SQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESF 183 (345)
T ss_dssp SCCTTEEEETTCSCHHHHHHHHTTCC--------------------CEEECCC------------------CCCHHHHHH
T ss_pred cCCCceEEEcCcCCHHHHHHHHHhcccCCcccccc----CcccccCceEEEECCcccccccccccCCCCCcCcCHHHHHH
Confidence 45567999999999999999987654111110010 111111 111110000 000112345667
Q ss_pred HHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccc
Q 024559 147 EKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWW 226 (266)
Q Consensus 147 ~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~ 226 (266)
.+|+... ++.-...+..-+..|.+|+.-.||.|.... -+..++|+-+ |+..+|-.-...
T Consensus 184 ~~r~~~~-~~~~~~~n~~lvN~Y~~G~~I~~H~D~~~~------~~~~I~slSL-------G~~~~f~f~~~~------- 242 (345)
T 3tht_A 184 LEKWLRK-GYIKHKPDQMTINQYEPGQGIPAHIDTHSA------FEDEIVSLSL-------GSEIVMDFKHPD------- 242 (345)
T ss_dssp HHHHHHH-TSCSSCCSEEEEEEECTTCCEEEECCCTTT------BCSCEEEEEE-------SSCEEEEEECTT-------
T ss_pred HHHHHhc-ccCCCCCCEEEEEEecCCCCEeeccCCchh------cCCeEEEEEC-------CCceeEEEccCC-------
Confidence 7777542 221123346788889999999999997432 1345666654 555555332100
Q ss_pred cccccccCCCeEEecccceEEEE
Q 024559 227 NELSECGKQGLSVKPKRGDALLF 249 (266)
Q Consensus 227 ~~l~~c~~~~l~V~Pk~G~aLlF 249 (266)
...+.|.-..|+++++
T Consensus 243 -------~~~~~l~L~~gsLlvM 258 (345)
T 3tht_A 243 -------GIAVPVMLPRRSLLVM 258 (345)
T ss_dssp -------SCEEEEEECTTEEEEE
T ss_pred -------CceEEEEcCCCcEEEE
Confidence 0134566667777776
No 15
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=94.95 E-value=0.43 Score=40.34 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=82.2
Q ss_pred EeecCCCEEEEcCCCCHHHHHHHHHHhcC--CC---ccceeeeCCCCCcccc------------ceeeccceeecCCchH
Q 024559 79 IVAWEPRAFVYHNFLSKAECEYLIDLAKP--YM---VKSTVVDSKTGQSKDS------------RVRTSSGTFLKRGQDR 141 (266)
Q Consensus 79 ~ls~~P~i~vi~nfLS~~EC~~Li~~a~~--~l---~~s~v~~~~~g~~~~~------------~~Rts~~~~l~~~~d~ 141 (266)
-|-.+-..+.+.+||+++|+++|.+.... .+ +...+.- -|+.... .++-+........=.+
T Consensus 5 ~~~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~pR~~~wyg~~~~~Y~Ysg~~~~~~pwp~ 82 (204)
T 3s57_A 5 HIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIP 82 (204)
T ss_dssp EEEETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEECSSEEEEEECTTCCEEETTEEECCEECCH
T ss_pred eeeeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEeccCcEEEEECCCCCCcccCCCcccCCCCCH
Confidence 34455667889999999999999876532 23 2222211 1221111 1222211111111146
Q ss_pred HHHHHHHHHhhhccCCCCCCCccEEEEcCCCC-cccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcc
Q 024559 142 IIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQ-KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANF 220 (266)
Q Consensus 142 lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~ 220 (266)
.+..|.+++..+++.+ .+..-+..|.+|+ .-.+|.|.... ...+.-++|+-+ |+...|-.-....
T Consensus 83 ~L~~l~~~~~~~~g~~---~n~~LvN~Y~~G~d~i~~H~D~~~~----~~~~~~IasvSL-------G~~~~f~~~~~~~ 148 (204)
T 3s57_A 83 VLERIRDHVSGVTGQT---FNFVLINRYKDGSDHICEHRDDERE----LAPGSPIASVSF-------GASRDFVFRHKDS 148 (204)
T ss_dssp HHHHHHHHHHHHHCCC---CSEEEEEEESSTTCCEEEECCCCTT----BCTTCCEEEEEE-------ESCEEEEEEEGGG
T ss_pred HHHHHHHHHHHHhCCC---CceeEEEEECCCCCcccceecChhh----ccCCCcEEEEEC-------CCceEEEEEEcCC
Confidence 7888888888877753 3356788999999 89999996421 112345566554 4455553211000
Q ss_pred cccccccccccccCCCeEEecccceEEEEe
Q 024559 221 TSVRWWNELSECGKQGLSVKPKRGDALLFW 250 (266)
Q Consensus 221 s~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~ 250 (266)
... . .......+.|.-..|++|++.
T Consensus 149 ~~~----~-~~~~~~~~~~~L~~GsllvM~ 173 (204)
T 3s57_A 149 RGK----S-PSRRVAVVRLPLAHGSLLMMN 173 (204)
T ss_dssp CSS----S-CSCCCCCEEEEECTTEEEEEE
T ss_pred Ccc----c-cccCCceEEEECCCCCEEEEC
Confidence 000 0 000113578888999999974
No 16
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=92.33 E-value=1.1 Score=38.12 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCccc
Q 024559 142 IIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFT 221 (266)
Q Consensus 142 lv~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s 221 (266)
.+..+.+++....+++.-..+..-+..|.+|+.-.+|.|.....+ +.-++|+-+ |++.+|-.-....
T Consensus 85 ~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~~i~~H~D~~e~~~-----~~pI~svSL-------G~~~~f~f~~~~~- 151 (211)
T 3i3q_A 85 SFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDL-----RAPIVSVSL-------GLPAIFQFGGLKR- 151 (211)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCEEEEEEECTTCCEEEECCCCCSCT-----TSCEEEEEE-------ESCEEEEECCSST-
T ss_pred HHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCCCcccccCCCcccc-----CCCEEEEEC-------CCCeEEEEecccC-
Confidence 567788888777765433335678888999999999999522111 244777665 5666664321100
Q ss_pred ccccccccccccCCCeEEecccceEEEEe
Q 024559 222 SVRWWNELSECGKQGLSVKPKRGDALLFW 250 (266)
Q Consensus 222 ~~~~~~~l~~c~~~~l~V~Pk~G~aLlF~ 250 (266)
......|.-..|++|++.
T Consensus 152 -----------~~~~~~i~L~~GsllvM~ 169 (211)
T 3i3q_A 152 -----------NDPLKRLLLEHGDVVVWG 169 (211)
T ss_dssp -----------TSCCEEEEECTTCEEEEC
T ss_pred -----------CCceEEEECCCCCEEEEC
Confidence 013467778888888873
No 17
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=77.17 E-value=4.1 Score=36.93 Aligned_cols=129 Identities=9% Similarity=-0.038 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCC-C-CCccccceeecccee---ecCCchHHHHHHHHHHhhhccCC
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSK-T-GQSKDSRVRTSSGTF---LKRGQDRIIRGIEKRIADFTFIP 157 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~-~-g~~~~~~~Rts~~~~---l~~~~d~lv~~I~~Ri~~~~glp 157 (266)
+-+ .++.+++|++|.+.|++..+.....+.+.... + .......+|+....+ ....-+.+..++..-+..++|-.
T Consensus 40 eGY-Lvlk~vFs~eEv~~l~~el~~~~~d~~~~k~~~~i~~~~s~~lrs~~H~~~~f~~h~~s~l~~rll~vl~~LlG~e 118 (344)
T 3nnf_A 40 KGY-CQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKN 118 (344)
T ss_dssp HSE-EEETTCSCHHHHHHHHHHHHHHHHHCCCCSHHHHHHTTSCCCCBCSEEEECSSCHHHHHHHHGGGHHHHHHHHTSC
T ss_pred Cce-EEEcCCCCHHHHHHHHHHHHHHhhchhhhcccceecCCCccchhcccccchhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344 58999999999999999886532222211000 0 000112344321111 11001133333344444455533
Q ss_pred CCCCCccEEEEcCCCC-cccccccccccccccCCCCceEEEEEEeccccC--CCcceec-cC
Q 024559 158 MEHGEGIQVLHYEVGQ-KYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE--EGGETVF-PA 215 (266)
Q Consensus 158 ~~~~E~lqv~rY~~G~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~--eGGeT~F-p~ 215 (266)
.- .-.-+...+.+|+ -|.||.|...-. ......|-+|+=+=|.+.. .+|...+ |.
T Consensus 119 l~-i~qs~~fe~kPG~KGFpWH~D~~~F~--~~~~eD~a~S~WIpLd~i~~e~nGGM~~VP~ 177 (344)
T 3nnf_A 119 LM-IMHNALFSVEPNHKGLPWHVGVGSFS--FTKTEDFGASIWIPLDKITKEHRGGMQYVST 177 (344)
T ss_dssp EE-EEEEEEEEECBTCCBSCSBCTTTTTT--TBCTTSCEEEEEEESSCBCTTTBCSEEEECT
T ss_pred ee-eeecceEeeCCCCCCCCceecccccc--cccCCCCeEEEEEECCCCCccCCCceEEecC
Confidence 21 1123556677776 699999933111 1222447788888887765 3555544 63
No 18
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=51.07 E-value=28 Score=30.91 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.+++..=++++.++.+.+.++
T Consensus 32 GFF~v~nHGi~~~l~~~~~~~~~ 54 (319)
T 1w9y_A 32 GFFELVNHGIPREVMDTVEKMTK 54 (319)
T ss_dssp SEEEEESCSSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCHHHHHHHHHHHH
Confidence 44455566678888888777664
No 19
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=47.89 E-value=44 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.++...=++++.++.+.+.++
T Consensus 34 GFf~v~nHGi~~~~~~~~~~~~~ 56 (312)
T 3oox_A 34 GFAVLSDYDLDQARIDAAVDSAK 56 (312)
T ss_dssp SEEEEESCCSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHH
Confidence 34445555567777777777664
No 20
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=36.03 E-value=54 Score=28.87 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+.+++..=++++.++.+.+.++
T Consensus 29 ~GFf~l~nHGi~~~l~~~~~~~~~ 52 (311)
T 1dcs_A 29 KGLFYLTDCGLTDTELKSAKDLVI 52 (311)
T ss_dssp TCEEEEESSSCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHH
Confidence 345556666788888888887764
No 21
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=36.01 E-value=77 Score=28.43 Aligned_cols=24 Identities=4% Similarity=-0.123 Sum_probs=17.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhc
Q 024559 83 EPRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 83 ~P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
.-+.+++..=++.+.++.+.+.++
T Consensus 77 ~GFF~v~nHGi~~~l~~~~~~~~~ 100 (356)
T 1gp6_A 77 WGVMHLINHGIPADLMERVKKAGE 100 (356)
T ss_dssp TSEEEEESCSCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 345566666789999998888775
No 22
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=31.45 E-value=33 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=24.8
Q ss_pred ccccccccccccccCCCCceEEEEEEeccccCCCcceeccCC
Q 024559 175 YDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAA 216 (266)
Q Consensus 175 y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~ 216 (266)
-.||.|..+.. ..-.+++|.-+.-+..||+|.|-+.
T Consensus 96 ~~wHtD~sy~~------~pp~~~~L~c~~~p~~GG~T~~~d~ 131 (283)
T 1otj_A 96 DNWHTDVTFIE------TPPAGAILAAKELPSTGGDTLWTSG 131 (283)
T ss_dssp CSCBCTTTTSS------SCEEEEEEEEEECCSSCCCEEEEEH
T ss_pred CCcEeeccCcc------CCCceEEEEEEecCCCCCcceeeeH
Confidence 35999976532 2334666666777788999999653
No 23
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=30.45 E-value=29 Score=30.09 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.4
Q ss_pred CcccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 173 QKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 173 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
+...||.|..+.. ..-.+++|.-+.-+..||+|.|-+
T Consensus 92 ~~~~wH~D~sy~~------~pp~~~~l~~~~~p~~GG~T~~~d 128 (277)
T 3pvj_A 92 DNAVWHTDVTFLP------TPALGAVLSAKQLPAYGGDTLWAS 128 (277)
T ss_dssp GGSSCBCTTTTSS------SCCCEEEEEEEECCSSCCCEEEEE
T ss_pred cCCCceeeCCCcC------CCCceEEEEeeccCCCCCCcEeee
Confidence 4577999986532 122356666666677899999964
No 24
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=29.76 E-value=79 Score=27.98 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhccCCCC--------CCCccE--EEEcC
Q 024559 142 IIRGIEKRIADFTFIPME--------HGEGIQ--VLHYE 170 (266)
Q Consensus 142 lv~~I~~Ri~~~~glp~~--------~~E~lq--v~rY~ 170 (266)
+...|.+-++..+|++.+ ..-.++ +.+|.
T Consensus 152 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~l~~YP 190 (331)
T 1odm_A 152 LSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP 190 (331)
T ss_dssp HHHHHHHHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCcHHHHHHHHhhCC
Confidence 334444445555666632 223578 99998
No 25
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=28.79 E-value=46 Score=25.22 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHhcC-CCccceeeeCCCCCccccceeeccceeecCC---------chHHHHHHHHHHhhhccCCCCCCCccEE
Q 024559 97 ECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRG---------QDRIIRGIEKRIADFTFIPMEHGEGIQV 166 (266)
Q Consensus 97 EC~~Li~~a~~-~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~---------~d~lv~~I~~Ri~~~~glp~~~~E~lqv 166 (266)
-.+.|++.++. ....+++..+-.|-......++.+...+..+ ..+-++.+..++.++..-.+-..|+.++
T Consensus 31 L~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~V 110 (114)
T 1o51_A 31 LFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNV 110 (114)
T ss_dssp HHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 45677777764 4666788776656554444454433222211 2456677777777765532233566777
Q ss_pred EEc
Q 024559 167 LHY 169 (266)
Q Consensus 167 ~rY 169 (266)
.+|
T Consensus 111 ~r~ 113 (114)
T 1o51_A 111 VKM 113 (114)
T ss_dssp CC-
T ss_pred Eec
Confidence 776
No 26
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=28.32 E-value=35 Score=29.56 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 172 GQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 172 G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
+....||.|..+.. ..-.+++|.-+.-+..||+|.|-+
T Consensus 102 ~~~~~wHtD~sy~~------~pP~~~~L~c~~~p~~GG~T~~ad 139 (301)
T 1oih_A 102 QRANSWHTDVTFVE------AYPKASILRSVVAPASGGDTVWAN 139 (301)
T ss_dssp -CCCSCBCTTTTSS------SCCSEEEEEEEECCSSCCCEEEEE
T ss_pred CcCcCCEecccCcC------CCCceEEEEEeecCCCCCcccccc
Confidence 34567999987632 122456666667777899999965
No 27
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.07 E-value=47 Score=20.05 Aligned_cols=7 Identities=14% Similarity=0.605 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024559 18 TLVLSML 24 (266)
Q Consensus 18 ~~~~~~~ 24 (266)
+.+.+..
T Consensus 8 ~sIaagV 14 (35)
T 1iij_A 8 TFIIATV 14 (35)
T ss_dssp HHHHHHH
T ss_pred cEeHHHH
Confidence 3333333
No 28
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=24.63 E-value=43 Score=28.43 Aligned_cols=38 Identities=18% Similarity=-0.085 Sum_probs=25.0
Q ss_pred CcccccccccccccccCCCCceEEEEEEeccccC--CCcceeccCC
Q 024559 173 QKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE--EGGETVFPAA 216 (266)
Q Consensus 173 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~--eGGeT~Fp~~ 216 (266)
+...||.|..... ..-.+++|.-+.-.. +||+|.|-+.
T Consensus 96 ~~~~~HtD~sy~~------~pp~~~~L~c~~~p~~~~GG~T~~~d~ 135 (273)
T 1nx8_A 96 GQLPFHADGGLLL------SQVDQVFLYAAEIKNVKFRGATTVCDH 135 (273)
T ss_dssp SCEEEECTTTTTT------CCCCEEEEEEEEEESCSSSSCEEEEEH
T ss_pred cCCCCcCCCCCcc------CCCeeEEEEeEeCCCCCCCCcchhhhH
Confidence 4567999976532 122355665666666 8999999653
No 29
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=23.91 E-value=45 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.6
Q ss_pred CcccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 173 QKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 173 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
....||.|..+.. ..-.+++|.-+.-+..||+|.|-+
T Consensus 98 ~~~~wH~D~s~~~------~pp~~~~l~~~~~p~~GG~T~fad 134 (301)
T 3r1j_A 98 KATRWHTDVTFAA------NYPAASILRAVTLPSYGGSTLWAS 134 (301)
T ss_dssp -CCSCBCTTTTSS------SCCSEEEEEEEECCSSCCCEEEEE
T ss_pred CCCCCccccCCcc------CCCceeEEEEeecCCCCCCCeeEc
Confidence 4567999987632 122356666666677899999954
No 30
>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, AT3 structural genomics; 2.39A {Arabidopsis thaliana} SCOP: b.82.2.8 PDB: 1y0z_A
Probab=23.70 E-value=34 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccC
Q 024559 171 VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPA 215 (266)
Q Consensus 171 ~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (266)
.+....||.|..+.. ..-..++|.-+.-+.+||+|.|-+
T Consensus 113 ~~~~~~~HtD~sy~~------~pP~~~~L~c~~~p~~GG~T~~ad 151 (330)
T 2q4a_A 113 PDQKIPFHHEMAQVR------EFPSKLFFYCEIEPKCGGETPIVL 151 (330)
T ss_dssp TTSCEEEECTTTTST------TCCSEEEEEEEECCSEECCCCEEE
T ss_pred CccccccccccCCCC------CCCceEEEECcCCCCcCCceeeec
Confidence 345677999976532 112356666666677899999865
No 31
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=22.58 E-value=82 Score=23.82 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=4.8
Q ss_pred Cccccccc
Q 024559 1 MVKLRHSR 8 (266)
Q Consensus 1 ~~~~~~~~ 8 (266)
|.|.|..+
T Consensus 1 ~~~m~~~~ 8 (186)
T 2kse_A 1 MGKFTQRL 8 (186)
T ss_dssp CCSTTTCS
T ss_pred CCCCCCcc
Confidence 66777543
No 32
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=21.99 E-value=1.2e+02 Score=26.24 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhc
Q 024559 84 PRAFVYHNFLSKAECEYLIDLAK 106 (266)
Q Consensus 84 P~i~vi~nfLS~~EC~~Li~~a~ 106 (266)
-+.+++.+=++++.++.+.+.++
T Consensus 26 GFF~v~nHGi~~~li~~~~~~~~ 48 (280)
T 3on7_A 26 GFGVLSNHPIDKELVERIYTEWQ 48 (280)
T ss_dssp SEEEEESCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
Confidence 34555666678888888877764
No 33
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*
Probab=21.14 E-value=60 Score=28.86 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=22.6
Q ss_pred CcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCC
Q 024559 173 QKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAA 216 (266)
Q Consensus 173 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~ 216 (266)
+...||.|..+.. ..-.+++|.-+.... ||+|.|-+.
T Consensus 163 ~~l~~HtD~sy~~------~pp~~~~L~cl~~p~-gG~T~~ad~ 199 (358)
T 2wbq_A 163 QELGWHTEDAFSP------YRADYVGLLSLRNPD-GVATTLAGV 199 (358)
T ss_dssp SCEEEECTTTTCT------TCCSEEEEEEEECTT-CCEEEEEEC
T ss_pred CCccccccCCCCC------CCCCeEEEEeEecCC-CCCceEEec
Confidence 3457999976532 112345665566655 899988553
Done!