BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024560
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 169/253 (66%), Gaps = 4/253 (1%)
Query: 9 LIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFK 68
L+ P + + + FI G+F ++DL F+++E+NP + Y LD+ ++D TA +
Sbjct: 169 LLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYI 228
Query: 69 NFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIY 128
KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288
Query: 129 ADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIAN 186
+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PDG + L+IGG IAN
Sbjct: 289 SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIAN 346
Query: 187 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG 246
FT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP+ V+G
Sbjct: 347 FTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFG 406
Query: 247 PEATMTGICKQAI 259
E MT I A+
Sbjct: 407 TETHMTAIVGMAL 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 170/258 (65%), Gaps = 4/258 (1%)
Query: 4 DACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDD 63
D L+ P + + + FI G+F ++DL F+++E+NP + Y LD+ ++D
Sbjct: 164 DIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDA 223
Query: 64 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGG 123
TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGRIWTMVAGGG
Sbjct: 224 TADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGG 283
Query: 124 ASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIG 181
ASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PDG + L+IG
Sbjct: 284 ASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIG 341
Query: 182 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP 241
G IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL M +G+ GIP
Sbjct: 342 GSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIP 401
Query: 242 LEVYGPEATMTGICKQAI 259
+ V+G E MT I A+
Sbjct: 402 IHVFGTETHMTAIVGMAL 419
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 167/258 (64%), Gaps = 4/258 (1%)
Query: 4 DACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDD 63
D L+ P + + + FI G+F ++DL F+++E+NP + Y LD+ ++D
Sbjct: 164 DIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDA 223
Query: 64 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGG 123
TA + KW +IEFP PFGR E++I LD K+ ASLK T+LNPKGRIWT VAGGG
Sbjct: 224 TADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGG 283
Query: 124 ASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIG 181
ASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ ++ T + PDG+ L+IG
Sbjct: 284 ASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGK--ILIIG 341
Query: 182 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIP 241
G IANFT+VA TF GI+RA+R+ + LK + IFVRRGGPNYQ GL +G+ GIP
Sbjct: 342 GSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGEVGKTTGIP 401
Query: 242 LEVYGPEATMTGICKQAI 259
+ V+G E T I A+
Sbjct: 402 IHVFGTETHXTAIVGXAL 419
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 28/210 (13%)
Query: 17 FRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWAN 75
+ + D I ++ +F +D + +E+NPF G+ D + DD A F+ +A
Sbjct: 180 LQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 239
Query: 76 IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDL 135
+ S I +E LK+ L+ G I V G G ++ D +
Sbjct: 240 DD---------KSENEPIE--NEAAKYDLKYIGLD--GNIACFVNGAGLAMATCDII--F 284
Query: 136 GYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFN 195
+ N+ + G E +V Q +++ TADP + I GGI N +A N
Sbjct: 285 LNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVEAILVNIFGGIVNCAIIA---N 337
Query: 196 GIIRALREKESKLKAARMHIFVRRGGPNYQ 225
GI +A RE E K+ + VR G N
Sbjct: 338 GITKACRELELKVP-----LVVRLEGTNVH 362
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 28/210 (13%)
Query: 17 FRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWAN 75
+ + D I ++ +F +D + +E+NPF G+ D + DD A F+ +A
Sbjct: 181 LQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 240
Query: 76 IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDL 135
+ S I +E LK+ L+ G I V G G ++ D +
Sbjct: 241 DD---------KSENEPIE--NEAAKYDLKYIGLD--GNIACFVNGAGLAMATCDII--F 285
Query: 136 GYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFN 195
+ N+ + G E +V Q +++ TADP + I GGI N +A N
Sbjct: 286 LNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVEAILVNIFGGIVNXAIIA---N 338
Query: 196 GIIRALREKESKLKAARMHIFVRRGGPNYQ 225
GI +A RE E K+ + VR G N
Sbjct: 339 GITKACRELELKVP-----LVVRLEGTNVH 363
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 28/210 (13%)
Query: 17 FRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWAN 75
+ + D I ++ +F +D + +E+NPF G+ D + DD A F+ +A
Sbjct: 181 LQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAM 240
Query: 76 IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDL 135
+ S I +E LK+ L+ G I V G G ++ D +
Sbjct: 241 DD---------KSENEPIE--NEAAKYDLKYIGLD--GNIACFVNGAGLAMATCDII--F 285
Query: 136 GYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFN 195
+ N+ + G E +V Q +++ TADP + I GGI N +A N
Sbjct: 286 LNGGKPANFLDLGGGVKESQVYQAFKLL----TADPKVEAILVNIFGGIVNXAIIA---N 338
Query: 196 GIIRALREKESKLKAARMHIFVRRGGPNYQ 225
GI +A RE E K+ + VR G N
Sbjct: 339 GITKAXRELELKVP-----LVVRLEGTNVH 363
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 26 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 84
MG+ +F + D + IE+NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 85 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 144
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 202
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 203 E 203
E
Sbjct: 338 E 338
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 26 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 84
MG+ +F + D + IE+NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 85 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 144
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 202
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 203 E 203
E
Sbjct: 338 E 338
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 26 MGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGR 84
MG+ +F + D + I +NP + G+ LD + D A F+ P R
Sbjct: 182 MGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQ-----------PDLR 230
Query: 85 VLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNY 144
+ E +A + + G I MV G G ++ D V G E N+
Sbjct: 231 EMRDQSQ--EDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHG--GEPANF 286
Query: 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG--GGIANFTDVATTFNGIIRALR 202
+ G +E V + ++++ D + +A+L+ GGI +A +GII A+
Sbjct: 287 LDVGGGATKERVTEAFKIILS------DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVA 337
Query: 203 E 203
E
Sbjct: 338 E 338
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 56 DMRGELDDTAAFKNFKKW-ANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFT-VLNPKG 113
D++G+ DTAA + K + A E + V+S+ + I + E + SL ++ + P G
Sbjct: 13 DVQGKYLDTAAMEKLKAYFATGELRVRAASVISANAANI--VKEAVAKSLLYSDITRPGG 70
Query: 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN--EEEVLQ 158
++T + YA + DL Y YA +G P+ +E VL
Sbjct: 71 XMYT-------TRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLN 110
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 152 NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185
NE+ L+Y V+ID P KR L++G GIA
Sbjct: 22 NEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIA 55
>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|B Chain B, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|C Chain C, Crystal Structure Of A Mammalian Reductase
pdb|2ZAT|D Chain D, Crystal Structure Of A Mammalian Reductase
Length = 260
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 82 FGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASEL 141
FG ++ +TE D+ ++K TVL K + M GG SV+ +VG L
Sbjct: 105 FGNIIDATEEV---WDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNL 161
Query: 142 GNY 144
G Y
Sbjct: 162 GPY 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,078,448
Number of Sequences: 62578
Number of extensions: 346721
Number of successful extensions: 807
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 14
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)