Query 024560
Match_columns 266
No_of_seqs 157 out of 1081
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwd_A ATP-citrate synthase; A 100.0 9.4E-70 3.2E-74 520.8 19.8 251 7-260 167-420 (425)
2 3pff_A ATP-citrate synthase; p 100.0 6.4E-67 2.2E-71 533.0 21.2 257 2-261 161-421 (829)
3 2nu8_B SCS-beta, succinyl-COA 100.0 7.5E-60 2.5E-64 448.1 25.4 229 2-264 156-387 (388)
4 2fp4_B Succinyl-COA ligase [GD 100.0 2.5E-59 8.4E-64 445.5 25.0 229 2-264 163-394 (395)
5 3ufx_B Succinyl-COA synthetase 100.0 5.7E-56 2E-60 422.6 17.6 227 2-265 148-377 (397)
6 2csu_A 457AA long hypothetical 99.9 2.2E-23 7.4E-28 201.3 13.8 157 64-263 262-446 (457)
7 3dmy_A Protein FDRA; predicted 99.3 8.4E-12 2.9E-16 121.1 12.7 128 112-264 249-414 (480)
8 1wr2_A Hypothetical protein PH 98.8 5.7E-09 2E-13 91.5 6.6 49 16-64 185-237 (238)
9 3dmy_A Protein FDRA; predicted 97.5 0.00039 1.3E-08 67.4 10.7 121 111-263 111-236 (480)
10 3mwd_B ATP-citrate synthase; A 97.4 0.0008 2.7E-08 62.3 10.7 95 111-225 167-264 (334)
11 2fp4_A Succinyl-COA ligase [GD 97.3 0.00093 3.2E-08 60.9 10.0 127 112-260 152-300 (305)
12 1oi7_A Succinyl-COA synthetase 97.3 0.0021 7.3E-08 58.0 11.9 125 112-260 144-285 (288)
13 2yv1_A Succinyl-COA ligase [AD 97.1 0.0021 7E-08 58.2 9.4 92 112-224 150-243 (294)
14 2yv2_A Succinyl-COA synthetase 97.1 0.0025 8.6E-08 57.7 9.8 98 112-227 151-249 (297)
15 2nu8_A Succinyl-COA ligase [AD 96.9 0.0037 1.3E-07 56.3 9.3 93 112-224 144-238 (288)
16 3pff_A ATP-citrate synthase; p 96.6 0.012 4E-07 60.5 11.5 96 111-225 653-750 (829)
17 2csu_A 457AA long hypothetical 96.4 0.012 4.2E-07 56.2 9.9 93 113-225 150-242 (457)
18 2yxb_A Coenzyme B12-dependent 88.5 3.1 0.00011 33.7 9.6 111 123-263 34-144 (161)
19 2yxg_A DHDPS, dihydrodipicolin 78.6 23 0.00078 31.2 11.6 109 142-264 10-124 (289)
20 1ccw_A Protein (glutamate muta 78.4 12 0.0004 29.3 8.6 110 123-262 19-134 (137)
21 2ehh_A DHDPS, dihydrodipicolin 77.4 28 0.00097 30.6 11.8 108 143-264 11-124 (294)
22 2lnd_A De novo designed protei 76.3 10 0.00035 28.0 7.0 53 211-265 50-102 (112)
23 3o9z_A Lipopolysaccaride biosy 76.1 32 0.0011 30.3 11.8 106 114-242 5-126 (312)
24 3rst_A Signal peptide peptidas 74.8 6.5 0.00022 33.8 6.6 67 150-230 28-97 (240)
25 1o5k_A DHDPS, dihydrodipicolin 74.3 29 0.001 30.8 11.1 109 142-264 22-136 (306)
26 3dbi_A Sugar-binding transcrip 73.1 20 0.0007 31.0 9.6 78 113-205 182-265 (338)
27 3oa2_A WBPB; oxidoreductase, s 73.1 32 0.0011 30.3 11.1 108 114-242 5-127 (318)
28 3zxn_A RSBS, anti-sigma-factor 72.9 22 0.00076 27.1 8.7 103 146-263 17-119 (123)
29 3l21_A DHDPS, dihydrodipicolin 72.8 47 0.0016 29.4 12.1 110 142-264 24-139 (304)
30 3qfe_A Putative dihydrodipicol 69.3 48 0.0016 29.6 11.4 111 143-264 20-137 (318)
31 3d8u_A PURR transcriptional re 69.1 42 0.0014 27.6 10.4 118 113-262 121-247 (275)
32 3fkr_A L-2-keto-3-deoxyarabona 68.9 63 0.0021 28.7 12.6 112 143-265 18-136 (309)
33 3na8_A Putative dihydrodipicol 68.5 50 0.0017 29.5 11.3 111 142-265 33-149 (315)
34 2wkj_A N-acetylneuraminate lya 68.3 63 0.0021 28.6 11.8 109 143-264 21-135 (303)
35 3qk7_A Transcriptional regulat 68.1 28 0.00095 29.5 9.2 78 113-205 127-210 (294)
36 3flu_A DHDPS, dihydrodipicolin 67.5 65 0.0022 28.3 12.3 110 143-265 17-132 (297)
37 3k4h_A Putative transcriptiona 67.2 36 0.0012 28.4 9.7 118 113-262 132-258 (292)
38 3qze_A DHDPS, dihydrodipicolin 66.4 62 0.0021 28.8 11.4 111 142-265 32-148 (314)
39 3si9_A DHDPS, dihydrodipicolin 65.6 60 0.0021 28.9 11.2 110 143-265 32-147 (315)
40 3tak_A DHDPS, dihydrodipicolin 65.6 67 0.0023 28.1 11.4 109 144-265 12-126 (291)
41 2v9d_A YAGE; dihydrodipicolini 64.9 68 0.0023 29.0 11.6 109 143-264 41-155 (343)
42 3nq4_A 6,7-dimethyl-8-ribityll 64.7 47 0.0016 27.0 9.3 125 112-263 12-149 (156)
43 2ojp_A DHDPS, dihydrodipicolin 64.5 69 0.0024 28.0 11.3 108 144-264 12-125 (292)
44 2cby_A ATP-dependent CLP prote 64.4 8.9 0.00031 32.3 5.1 71 145-232 30-105 (208)
45 3brq_A HTH-type transcriptiona 63.9 43 0.0015 27.8 9.5 119 112-262 139-266 (296)
46 1hqk_A 6,7-dimethyl-8-ribityll 63.8 42 0.0014 27.2 8.9 125 112-263 12-148 (154)
47 2r8w_A AGR_C_1641P; APC7498, d 62.7 87 0.003 28.1 12.0 110 142-264 43-158 (332)
48 3s5o_A 4-hydroxy-2-oxoglutarat 62.5 49 0.0017 29.3 10.0 111 143-264 24-140 (307)
49 3moi_A Probable dehydrogenase; 62.1 81 0.0028 28.3 11.6 122 114-262 4-137 (387)
50 4dpp_A DHDPS 2, dihydrodipicol 62.1 78 0.0027 29.0 11.4 108 142-263 68-182 (360)
51 1yg6_A ATP-dependent CLP prote 61.8 11 0.00038 31.3 5.2 62 153-231 40-103 (193)
52 2fep_A Catabolite control prot 61.7 49 0.0017 27.8 9.5 79 112-205 133-218 (289)
53 2i0f_A 6,7-dimethyl-8-ribityll 60.9 66 0.0023 26.1 9.8 125 113-263 13-150 (157)
54 3kke_A LACI family transcripti 60.5 48 0.0016 28.1 9.3 118 113-262 132-263 (303)
55 3h75_A Periplasmic sugar-bindi 59.9 52 0.0018 28.5 9.6 77 113-205 146-228 (350)
56 2rgy_A Transcriptional regulat 59.9 49 0.0017 27.7 9.2 78 112-205 128-212 (290)
57 2hsg_A Glucose-resistance amyl 59.7 58 0.002 28.0 9.8 78 113-205 178-262 (332)
58 2f6i_A ATP-dependent CLP prote 59.5 19 0.00066 30.5 6.4 40 175-227 72-111 (215)
59 1xky_A Dihydrodipicolinate syn 59.3 94 0.0032 27.4 12.3 109 143-264 22-136 (301)
60 1qpz_A PURA, protein (purine n 59.1 51 0.0017 28.5 9.4 78 113-205 178-261 (340)
61 3dz1_A Dihydrodipicolinate syn 58.8 90 0.0031 27.7 11.0 109 143-264 18-130 (313)
62 2xij_A Methylmalonyl-COA mutas 58.8 34 0.0012 34.8 8.9 111 123-263 620-730 (762)
63 3g85_A Transcriptional regulat 58.8 53 0.0018 27.3 9.1 120 113-262 128-256 (289)
64 3gyb_A Transcriptional regulat 58.5 68 0.0023 26.5 9.7 118 112-262 118-242 (280)
65 2kln_A Probable sulphate-trans 58.5 48 0.0016 24.9 8.0 87 152-258 29-121 (130)
66 3b4u_A Dihydrodipicolinate syn 58.2 96 0.0033 27.2 11.6 110 143-264 13-128 (294)
67 1dbq_A Purine repressor; trans 57.7 53 0.0018 27.3 9.0 78 113-205 127-210 (289)
68 3bbl_A Regulatory protein of L 57.7 63 0.0021 27.0 9.5 79 112-205 125-211 (287)
69 1zh8_A Oxidoreductase; TM0312, 57.6 89 0.003 27.5 10.8 123 114-262 20-155 (340)
70 3ezx_A MMCP 1, monomethylamine 57.5 40 0.0014 28.3 8.1 107 123-261 108-214 (215)
71 3h5d_A DHDPS, dihydrodipicolin 57.2 81 0.0028 28.0 10.4 109 142-264 16-132 (311)
72 2p2s_A Putative oxidoreductase 56.7 1E+02 0.0034 26.9 12.4 57 170-243 64-121 (336)
73 1c2y_A Protein (lumazine synth 56.4 79 0.0027 25.6 11.1 126 112-263 13-148 (156)
74 3eb2_A Putative dihydrodipicol 56.3 38 0.0013 30.0 8.1 110 143-265 14-129 (300)
75 3mvn_A UDP-N-acetylmuramate:L- 55.7 73 0.0025 25.1 9.0 92 149-263 43-137 (163)
76 1f6k_A N-acetylneuraminate lya 55.5 1.1E+02 0.0036 26.8 12.1 110 143-264 13-128 (293)
77 3cpr_A Dihydrodipicolinate syn 55.3 1.1E+02 0.0038 26.9 12.5 109 143-264 26-140 (304)
78 3a5f_A Dihydrodipicolinate syn 54.7 81 0.0028 27.6 9.9 107 144-264 13-125 (291)
79 3m5v_A DHDPS, dihydrodipicolin 54.6 1.1E+02 0.0038 26.8 11.2 104 148-264 22-132 (301)
80 3e82_A Putative oxidoreductase 54.2 1.2E+02 0.004 27.0 12.4 122 114-262 9-140 (364)
81 3h5o_A Transcriptional regulat 54.1 90 0.0031 26.8 10.1 78 113-205 179-262 (339)
82 1y7o_A ATP-dependent CLP prote 53.7 18 0.00062 30.7 5.2 62 154-232 60-123 (218)
83 2rfg_A Dihydrodipicolinate syn 53.4 81 0.0028 27.7 9.7 104 148-264 15-124 (297)
84 2wme_A BADH, betaine aldehyde 52.9 1E+02 0.0034 29.3 10.9 30 213-260 247-276 (490)
85 3i23_A Oxidoreductase, GFO/IDH 52.5 60 0.0021 28.7 8.8 123 114-262 4-138 (349)
86 3bf0_A Protease 4; bacterial, 52.5 14 0.00047 36.2 4.8 65 151-229 322-388 (593)
87 3gv0_A Transcriptional regulat 52.4 40 0.0014 28.3 7.3 118 113-262 128-254 (288)
88 2ve5_A BADH, betaine aldehyde 52.4 1.1E+02 0.0039 28.7 11.1 22 21-42 68-89 (490)
89 2o20_A Catabolite control prot 52.4 78 0.0027 27.2 9.4 76 113-205 181-262 (332)
90 3d0c_A Dihydrodipicolinate syn 52.2 1.2E+02 0.0041 26.8 10.8 110 142-265 20-136 (314)
91 2iks_A DNA-binding transcripti 52.2 90 0.0031 26.0 9.6 76 113-205 139-220 (293)
92 3kjx_A Transcriptional regulat 52.2 54 0.0019 28.4 8.4 78 113-205 186-270 (344)
93 3u3x_A Oxidoreductase; structu 52.0 1E+02 0.0035 27.4 10.4 104 113-243 27-143 (361)
94 1rvv_A Riboflavin synthase; tr 51.3 74 0.0025 25.8 8.3 125 112-263 12-148 (154)
95 4e4g_A Methylmalonate-semialde 50.8 1.3E+02 0.0046 28.6 11.5 43 161-223 233-275 (521)
96 1kz1_A 6,7-dimethyl-8-ribityll 50.8 68 0.0023 26.1 8.0 125 112-263 17-155 (159)
97 3fhl_A Putative oxidoreductase 50.7 13 0.00043 33.5 4.0 81 160-262 57-138 (362)
98 3e96_A Dihydrodipicolinate syn 50.7 1.1E+02 0.0038 27.1 10.2 108 142-264 20-135 (316)
99 3h5t_A Transcriptional regulat 50.4 1.3E+02 0.0043 26.2 10.6 101 128-262 228-332 (366)
100 3l49_A ABC sugar (ribose) tran 50.3 1.1E+02 0.0037 25.3 10.1 122 113-262 126-259 (291)
101 2h0a_A TTHA0807, transcription 50.2 91 0.0031 25.5 9.2 90 113-223 115-219 (276)
102 1y80_A Predicted cobalamin bin 49.7 86 0.0029 25.7 8.8 117 112-262 88-209 (210)
103 3gdo_A Uncharacterized oxidore 49.4 1.3E+02 0.0043 26.7 10.5 122 114-262 7-138 (358)
104 3bf0_A Protease 4; bacterial, 49.0 29 0.001 33.9 6.5 65 151-232 70-138 (593)
105 1a4s_A ALDH, betaine aldehyde 48.2 1.2E+02 0.0043 28.6 10.7 22 20-41 81-102 (503)
106 1f76_A Dihydroorotate dehydrog 47.5 97 0.0033 27.3 9.4 106 128-242 123-241 (336)
107 3u4j_A NAD-dependent aldehyde 47.4 1E+02 0.0035 29.5 10.0 19 241-260 276-294 (528)
108 3rh9_A Succinate-semialdehyde 47.2 92 0.0031 29.6 9.6 23 20-42 72-94 (506)
109 3b4w_A Aldehyde dehydrogenase; 47.1 1.3E+02 0.0045 28.4 10.7 23 20-42 71-93 (495)
110 4ew6_A D-galactose-1-dehydroge 46.2 13 0.00045 33.1 3.3 106 114-242 27-135 (330)
111 3ek1_A Aldehyde dehydrogenase; 46.0 1.2E+02 0.004 28.9 10.1 30 213-260 272-301 (504)
112 2d4e_A 5-carboxymethyl-2-hydro 45.7 1.3E+02 0.0044 28.6 10.4 19 241-260 277-295 (515)
113 3ros_A NAD-dependent aldehyde 45.7 97 0.0033 29.2 9.5 20 22-41 51-70 (484)
114 3zwt_A Dihydroorotate dehydrog 45.6 80 0.0027 28.9 8.6 88 144-241 150-249 (367)
115 3rot_A ABC sugar transporter, 45.1 1.3E+02 0.0046 25.0 12.6 122 112-262 130-258 (297)
116 2o2p_A Formyltetrahydrofolate 45.0 1.6E+02 0.0054 28.1 10.9 32 212-261 282-313 (517)
117 3vow_A Probable DNA DC->DU-edi 45.0 15 0.00053 31.0 3.3 77 170-259 81-161 (190)
118 3daq_A DHDPS, dihydrodipicolin 44.3 1.6E+02 0.0055 25.6 11.1 102 150-264 19-126 (292)
119 3ifg_A Succinate-semialdehyde 44.2 1.2E+02 0.0041 28.5 9.9 12 212-223 251-262 (484)
120 3uug_A Multiple sugar-binding 44.2 1.2E+02 0.004 25.7 9.1 94 149-262 181-275 (330)
121 4fb5_A Probable oxidoreductase 43.9 82 0.0028 27.7 8.3 75 170-262 92-167 (393)
122 3c3k_A Alanine racemase; struc 43.7 74 0.0025 26.5 7.6 76 112-205 124-207 (285)
123 2vc6_A MOSA, dihydrodipicolina 43.2 1.7E+02 0.0057 25.5 10.4 104 148-264 15-124 (292)
124 1xrs_B D-lysine 5,6-aminomutas 43.1 1.7E+02 0.0058 25.6 10.1 97 143-262 159-256 (262)
125 3tml_A 2-dehydro-3-deoxyphosph 42.2 62 0.0021 28.9 7.0 25 219-243 68-92 (288)
126 4gyw_A UDP-N-acetylglucosamine 42.1 70 0.0024 31.8 8.2 112 112-263 552-667 (723)
127 3jvd_A Transcriptional regulat 42.0 1.3E+02 0.0044 25.9 9.1 114 112-262 174-297 (333)
128 3etf_A Putative succinate-semi 40.9 1.7E+02 0.0057 27.2 10.3 20 22-41 54-73 (462)
129 1tjy_A Sugar transport protein 40.8 1.7E+02 0.0057 24.9 10.2 120 112-262 128-255 (316)
130 3k9c_A Transcriptional regulat 40.6 84 0.0029 26.3 7.5 77 113-205 127-208 (289)
131 3jz4_A Succinate-semialdehyde 40.4 1.3E+02 0.0043 28.3 9.4 19 241-260 260-278 (481)
132 4b4o_A Epimerase family protei 40.1 77 0.0026 26.8 7.2 42 152-201 194-236 (298)
133 4e3x_A Delta-1-pyrroline-5-car 39.9 1.6E+02 0.0054 28.5 10.1 29 214-260 310-338 (563)
134 4dng_A Uncharacterized aldehyd 39.6 1.6E+02 0.0056 27.5 10.0 19 241-260 259-277 (485)
135 3viv_A 441AA long hypothetical 39.5 40 0.0014 28.9 5.2 49 171-232 37-90 (230)
136 1bxs_A Aldehyde dehydrogenase; 39.1 1.9E+02 0.0065 27.3 10.4 31 212-260 263-293 (501)
137 3ed6_A Betaine aldehyde dehydr 38.7 2.1E+02 0.0073 27.1 10.8 31 212-260 273-303 (520)
138 3e3m_A Transcriptional regulat 38.6 1.1E+02 0.0039 26.4 8.2 118 113-262 188-316 (355)
139 1req_A Methylmalonyl-COA mutas 38.4 96 0.0033 31.3 8.4 111 123-263 612-722 (727)
140 3iwj_A Putative aminoaldehyde 38.4 1.4E+02 0.0047 28.3 9.3 22 20-41 73-94 (503)
141 3haz_A Proline dehydrogenase; 38.3 1.7E+02 0.0058 30.5 10.6 60 170-260 725-784 (1001)
142 1o04_A Aldehyde dehydrogenase, 38.1 1.6E+02 0.0054 27.9 9.7 19 241-260 274-292 (500)
143 3clk_A Transcription regulator 37.8 88 0.003 26.0 7.2 117 113-262 126-251 (290)
144 4fn4_A Short chain dehydrogena 37.7 1.9E+02 0.0066 24.7 10.5 81 107-204 1-82 (254)
145 3i0p_A Malate dehydrogenase; a 37.6 52 0.0018 30.3 6.0 63 171-242 280-344 (365)
146 3lp8_A Phosphoribosylamine-gly 37.3 1.8E+02 0.006 26.8 9.7 49 195-258 97-154 (442)
147 3r64_A NAD dependent benzaldeh 37.3 1.6E+02 0.0056 27.8 9.6 40 110-152 147-186 (508)
148 1jye_A Lactose operon represso 37.0 1.9E+02 0.0064 24.9 9.5 77 112-205 179-261 (349)
149 1jub_A Dihydroorotate dehydrog 36.9 1.8E+02 0.0061 25.1 9.3 79 146-241 99-187 (311)
150 2imp_A Lactaldehyde dehydrogen 36.9 1.6E+02 0.0055 27.5 9.5 22 20-41 67-88 (479)
151 2nwr_A 2-dehydro-3-deoxyphosph 36.5 1.1E+02 0.0038 26.8 7.7 25 219-243 55-79 (267)
152 2nvw_A Galactose/lactose metab 36.3 2.7E+02 0.0092 25.9 10.9 128 114-262 41-188 (479)
153 3t6o_A Sulfate transporter/ant 36.1 1.1E+02 0.0036 22.5 6.7 73 171-258 46-119 (121)
154 3i44_A Aldehyde dehydrogenase; 36.1 1.6E+02 0.0056 27.7 9.4 38 170-223 238-275 (497)
155 3db2_A Putative NADPH-dependen 35.7 2.2E+02 0.0077 24.8 12.0 120 114-262 7-139 (354)
156 3fs2_A 2-dehydro-3-deoxyphosph 35.6 95 0.0032 27.8 7.2 25 219-243 92-116 (298)
157 1h4x_A SPOIIAA, anti-sigma F f 34.6 85 0.0029 22.6 5.8 74 171-260 40-113 (117)
158 2qu7_A Putative transcriptiona 34.6 1.9E+02 0.0066 23.8 8.8 117 112-262 122-253 (288)
159 3llo_A Prestin; STAS domain, c 34.5 1E+02 0.0034 23.3 6.4 71 171-258 62-138 (143)
160 1t90_A MMSDH, probable methylm 34.4 2.8E+02 0.0097 25.9 10.8 19 241-260 255-273 (486)
161 3ip3_A Oxidoreductase, putativ 33.9 82 0.0028 27.6 6.5 60 161-241 60-120 (337)
162 4h3v_A Oxidoreductase domain p 33.6 1.6E+02 0.0054 25.7 8.4 78 168-262 71-151 (390)
163 3ju8_A Succinylglutamic semial 33.5 1.9E+02 0.0065 27.1 9.4 20 22-41 67-86 (490)
164 3r31_A BADH, betaine aldehyde 33.1 3E+02 0.01 26.0 10.8 19 241-260 264-282 (517)
165 3k2w_A Betaine-aldehyde dehydr 32.8 1.5E+02 0.0053 27.9 8.6 18 111-128 148-165 (497)
166 3sz8_A 2-dehydro-3-deoxyphosph 32.6 99 0.0034 27.5 6.8 25 219-243 71-95 (285)
167 2fvy_A D-galactose-binding per 32.6 2.1E+02 0.0072 23.6 13.4 118 114-262 142-269 (309)
168 3lkb_A Probable branched-chain 32.3 2.2E+02 0.0075 24.6 9.1 49 126-178 32-81 (392)
169 4gqa_A NAD binding oxidoreduct 31.9 1.4E+02 0.0046 26.9 7.8 56 170-242 94-150 (412)
170 4had_A Probable oxidoreductase 31.7 97 0.0033 27.1 6.7 102 114-242 25-140 (350)
171 3egc_A Putative ribose operon 31.5 72 0.0025 26.5 5.6 118 113-262 126-252 (291)
172 1uxt_A Glyceraldehyde-3-phosph 31.4 2.2E+02 0.0077 26.8 9.5 24 20-43 78-101 (501)
173 4f3x_A Putative aldehyde dehyd 31.2 1.1E+02 0.0037 29.0 7.2 20 110-129 160-179 (498)
174 4hkt_A Inositol 2-dehydrogenas 30.8 2.6E+02 0.0089 24.1 12.7 121 114-262 5-136 (331)
175 1tg6_A Putative ATP-dependent 30.8 98 0.0034 27.4 6.4 75 144-232 84-160 (277)
176 1jx6_A LUXP protein; protein-l 30.5 2.5E+02 0.0085 23.8 9.0 76 113-205 176-257 (342)
177 3kux_A Putative oxidoreductase 30.2 1.8E+02 0.006 25.6 8.2 122 114-262 9-140 (352)
178 3tqt_A D-alanine--D-alanine li 29.9 39 0.0013 30.7 3.8 22 12-33 274-295 (372)
179 3miz_A Putative transcriptiona 29.9 60 0.002 27.3 4.8 119 113-262 132-264 (301)
180 3s2u_A UDP-N-acetylglucosamine 29.7 1.4E+02 0.0049 26.3 7.5 66 181-257 186-252 (365)
181 4dgf_A Sulfate transporter sul 29.2 1.8E+02 0.0062 21.8 8.1 79 172-265 51-132 (135)
182 2uva_G Fatty acid synthase bet 28.3 4E+02 0.014 30.2 11.9 127 114-263 582-714 (2060)
183 3qan_A 1-pyrroline-5-carboxyla 28.0 1.6E+02 0.0055 28.1 7.9 14 111-124 172-185 (538)
184 3oix_A Putative dihydroorotate 27.9 2.7E+02 0.0093 25.0 9.1 74 145-233 133-215 (345)
185 2r91_A 2-keto-3-deoxy-(6-phosp 27.7 3E+02 0.01 23.8 11.4 106 143-264 9-120 (286)
186 3tb6_A Arabinose metabolism tr 27.6 1.4E+02 0.0049 24.5 6.7 78 113-205 138-224 (298)
187 3bul_A Methionine synthase; tr 27.2 4.2E+02 0.014 25.8 10.7 111 123-263 114-224 (579)
188 3v4k_A DNA DC->DU-editing enzy 26.8 1.1E+02 0.0038 25.9 5.8 77 170-259 95-174 (203)
189 3mz0_A Inositol 2-dehydrogenas 26.7 2.1E+02 0.0073 24.9 8.0 76 170-262 64-140 (344)
190 4h08_A Putative hydrolase; GDS 26.4 2.3E+02 0.0078 22.0 12.1 51 150-204 56-108 (200)
191 4fs3_A Enoyl-[acyl-carrier-pro 26.4 2.2E+02 0.0075 23.7 7.8 26 110-135 3-31 (256)
192 3b0p_A TRNA-dihydrouridine syn 26.4 3.5E+02 0.012 24.1 9.8 64 145-223 62-139 (350)
193 2nyt_A Probable C->U-editing e 26.4 1.1E+02 0.0037 25.5 5.6 53 183-246 90-146 (190)
194 3fwz_A Inner membrane protein 26.3 2E+02 0.0069 21.4 10.9 118 110-262 5-137 (140)
195 2vk2_A YTFQ, ABC transporter p 26.3 2.8E+02 0.0096 23.0 8.8 76 113-205 129-214 (306)
196 3q2i_A Dehydrogenase; rossmann 26.2 3.2E+02 0.011 23.7 12.0 123 114-263 15-149 (354)
197 2hmc_A AGR_L_411P, dihydrodipi 26.0 3.6E+02 0.012 24.2 12.2 106 143-263 36-147 (344)
198 1dl6_A Transcription factor II 25.8 30 0.001 23.3 1.6 31 44-75 21-53 (58)
199 2r4q_A Phosphotransferase syst 25.7 84 0.0029 23.8 4.4 70 174-263 4-96 (106)
200 1uzb_A 1-pyrroline-5-carboxyla 25.2 3.2E+02 0.011 25.8 9.4 20 241-261 294-313 (516)
201 3ohs_X Trans-1,2-dihydrobenzen 25.2 2.5E+02 0.0086 24.3 8.2 56 170-242 64-120 (334)
202 2kiw_A INT protein; alpha, str 25.2 1E+02 0.0034 21.5 4.6 39 6-46 53-91 (111)
203 3v4c_A Aldehyde dehydrogenase 25.0 2.8E+02 0.0095 26.2 8.9 40 170-223 252-291 (528)
204 2ixa_A Alpha-N-acetylgalactosa 24.8 2.1E+02 0.0072 26.1 7.9 58 170-244 89-147 (444)
205 3evn_A Oxidoreductase, GFO/IDH 24.6 3.1E+02 0.011 23.7 8.7 62 161-243 60-122 (329)
206 1pft_A TFIIB, PFTFIIBN; N-term 24.3 46 0.0016 21.2 2.3 30 44-74 15-46 (50)
207 3qvl_A Putative hydantoin race 24.1 2.4E+02 0.0081 23.9 7.6 63 112-178 109-180 (245)
208 3p04_A Uncharacterized BCR; SE 24.1 88 0.003 22.9 4.1 30 195-232 19-48 (87)
209 3e9m_A Oxidoreductase, GFO/IDH 23.9 2.9E+02 0.01 23.8 8.4 76 170-263 65-141 (330)
210 3mjf_A Phosphoribosylamine--gl 23.6 2.1E+02 0.0073 26.0 7.7 49 195-258 81-138 (431)
211 3e18_A Oxidoreductase; dehydro 23.6 2.4E+02 0.0082 24.9 7.8 103 114-243 7-120 (359)
212 3ec7_A Putative dehydrogenase; 23.2 2.2E+02 0.0074 25.1 7.4 56 170-242 85-141 (357)
213 3qwd_A ATP-dependent CLP prote 23.2 1.9E+02 0.0065 24.0 6.6 62 154-232 42-105 (203)
214 1di0_A Lumazine synthase; tran 23.2 1.2E+02 0.0042 24.5 5.2 98 114-226 12-121 (158)
215 2dri_A D-ribose-binding protei 23.1 3.1E+02 0.01 22.3 13.2 119 113-262 124-248 (271)
216 2i2x_B MTAC, methyltransferase 22.6 3E+02 0.01 23.3 8.0 116 112-263 123-243 (258)
217 1wnd_A Putative betaine aldehy 22.6 1.6E+02 0.0056 27.7 6.8 39 110-151 158-196 (495)
218 1wv2_A Thiazole moeity, thiazo 22.4 35 0.0012 30.3 1.8 67 120-202 167-237 (265)
219 1sbo_A Putative anti-sigma fac 22.4 1.6E+02 0.0054 20.6 5.3 82 154-254 29-110 (110)
220 3mmt_A Fructose-bisphosphate a 22.3 3.5E+02 0.012 24.7 8.5 83 145-234 185-283 (347)
221 3lys_A Prophage PI2 protein 01 22.3 1.1E+02 0.0039 21.6 4.5 39 6-46 60-98 (112)
222 2khq_A Integrase; all-alpha, s 22.3 98 0.0034 21.4 4.1 38 7-46 57-94 (110)
223 3oqb_A Oxidoreductase; structu 22.1 2.4E+02 0.0082 24.9 7.5 56 170-242 81-137 (383)
224 4g81_D Putative hexonate dehyd 22.1 3.7E+02 0.013 22.9 8.4 68 110-191 6-74 (255)
225 1qey_A MNT-C, protein (regulat 22.0 33 0.0011 20.4 1.0 26 5-30 3-28 (31)
226 2e6f_A Dihydroorotate dehydrog 21.8 2.2E+02 0.0075 24.6 7.1 61 146-222 99-170 (314)
227 1gud_A ALBP, D-allose-binding 21.8 3.4E+02 0.012 22.3 10.3 121 113-262 134-260 (288)
228 3i65_A Dihydroorotate dehydrog 21.8 3.5E+02 0.012 25.2 8.7 30 145-180 186-219 (415)
229 2r48_A Phosphotransferase syst 21.5 87 0.003 23.7 3.7 70 174-263 4-96 (106)
230 2htm_A Thiazole biosynthesis p 21.5 59 0.002 28.8 3.1 47 143-203 179-229 (268)
231 2vos_A Folylpolyglutamate synt 21.5 3.3E+02 0.011 25.4 8.6 93 149-263 352-448 (487)
232 2w8n_A Succinate-semialdehyde 21.4 1.7E+02 0.0059 27.5 6.6 19 241-260 264-282 (487)
233 3jy6_A Transcriptional regulat 21.4 1.8E+02 0.006 23.9 6.1 119 113-262 124-247 (276)
234 1ydh_A AT5G11950; structural g 21.4 3.6E+02 0.012 22.6 11.0 71 176-260 108-186 (216)
235 3euw_A MYO-inositol dehydrogen 21.4 4E+02 0.014 23.0 11.3 106 114-242 6-119 (344)
236 1th8_B Anti-sigma F factor ant 21.4 2.2E+02 0.0075 20.0 6.7 85 155-258 29-113 (116)
237 3p2l_A ATP-dependent CLP prote 21.2 2.1E+02 0.0072 23.7 6.5 44 175-231 64-107 (201)
238 1ehi_A LMDDL2, D-alanine:D-lac 20.9 72 0.0025 28.7 3.7 34 13-46 275-321 (377)
239 3aon_B V-type sodium ATPase su 20.7 1.5E+02 0.0052 22.5 5.0 52 151-222 28-79 (115)
240 3hp4_A GDSL-esterase; psychrot 20.7 2.6E+02 0.0091 21.1 6.7 15 228-242 126-140 (185)
241 3hs3_A Ribose operon repressor 20.6 2.2E+02 0.0076 23.4 6.6 74 112-205 122-201 (277)
242 4h1h_A LMO1638 protein; MCCF-l 20.5 1.9E+02 0.0066 25.6 6.4 68 108-182 8-88 (327)
243 1geq_A Tryptophan synthase alp 20.4 3E+02 0.01 22.6 7.4 31 145-181 10-40 (248)
244 3hut_A Putative branched-chain 20.3 3.9E+02 0.013 22.5 9.4 47 127-177 30-77 (358)
245 3u9r_B MCC beta, methylcrotony 20.3 3E+02 0.01 26.7 8.1 63 150-216 367-429 (555)
246 4ef8_A Dihydroorotate dehydrog 20.3 3.5E+02 0.012 24.5 8.2 62 147-221 133-202 (354)
247 1lc0_A Biliverdin reductase A; 20.2 2.7E+02 0.0093 23.8 7.3 61 161-242 58-119 (294)
No 1
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=9.4e-70 Score=520.83 Aligned_cols=251 Identities=48% Similarity=0.873 Sum_probs=236.0
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHhCCceeeEeeccee-cCCceEEeeccccccCcccccCccccccccCCCCCCCC
Q 024560 7 APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRV 85 (266)
Q Consensus 7 ~~l~~gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLvv-~~g~~~alD~k~~iDd~A~~R~~~~~~~~~~~~~~~~~ 85 (266)
.+++.|+++..++++.+++.+||++|.++|++++|||||++ .+| ++|+|+|++|||||+||||+.|..++++.+|.++
T Consensus 167 ~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~ 245 (425)
T 3mwd_A 167 KHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGRE 245 (425)
T ss_dssp HTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSC
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecccchhhhChhhhhhhhcccccccc
Confidence 67888999889999999999999999999999999999999 666 9999999999999999999999988888888899
Q ss_pred CChhhhhhcccccccccccCceEecCCCcEEEEecCchHHHHHHHHHHhcCCCC--CCCceeeccCCCCHHHHHHHHHHH
Q 024560 86 LSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVLQYARVV 163 (266)
Q Consensus 86 ~~~~E~~a~~~d~~~~~~~~l~~v~l~G~Igii~NGaGlam~t~D~l~~~g~gg--~pAN~lDlgG~a~~~~~~~al~~l 163 (266)
.+|+|.++.++|++++++++|+||+|+||||||+|||||+|+|||+|+.+ || +||||+|+||+|++++++++++.+
T Consensus 246 ~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~--Gg~~~pANflD~gG~a~~e~v~~~~~~~ 323 (425)
T 3mwd_A 246 AYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTYDYAKTI 323 (425)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCGGGBCEEEEEESCCCHHHHHHHHHHH
T ss_pred CChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcceEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 68 799999999999999999998888
Q ss_pred HhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 164 IDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 164 l~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
++++++||+||+|||||||||++||+||+||+||++|+++....+...++||||||+|||+++|+++|+++.++.|+|++
T Consensus 324 l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~ 403 (425)
T 3mwd_A 324 LSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIH 403 (425)
T ss_dssp HHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceE
Confidence 88888899999999999999999999999999999999987432223689999999999999999999999888899999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 024560 244 VYGPEATMTGICKQAID 260 (266)
Q Consensus 244 ~~~~~~~~~eAv~~av~ 260 (266)
+||++++|+++|.+|+.
T Consensus 404 ~~gpe~~~~~i~~~a~~ 420 (425)
T 3mwd_A 404 VFGTETHMTAIVGMALG 420 (425)
T ss_dssp EECTTSCTTHHHHHHTT
T ss_pred EeCccchHHHHHHHHhc
Confidence 99999999999999974
No 2
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.4e-67 Score=532.98 Aligned_cols=257 Identities=47% Similarity=0.850 Sum_probs=240.6
Q ss_pred CHhhH-HHHHcCCChhHHHHHHHHHHHHHHHHHhCCceeeEeeccee-cCCceEEeeccccccCcccccCccccccccCC
Q 024560 2 TLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEFP 79 (266)
Q Consensus 2 ~~~~~-~~l~~gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLvv-~~g~~~alD~k~~iDd~A~~R~~~~~~~~~~~ 79 (266)
+++++ .+++.|+++..++++.+++.+||++|.++|++++|||||++ .+| ++|||+|++|||||+|||+++|..++++
T Consensus 161 ~~~~a~~~ll~g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~~ 239 (829)
T 3pff_A 161 NPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFP 239 (829)
T ss_dssp CHHHHHHTTTTTSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhcc
Confidence 34555 77889999999999999999999999999999999999999 666 9999999999999999999999988888
Q ss_pred CCCCCCCChhhhhhcccccccccccCceEecCCCcEEEEecCchHHHHHHHHHHhcCCCC--CCCceeeccCCCCHHHHH
Q 024560 80 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVL 157 (266)
Q Consensus 80 ~~~~~~~~~~E~~a~~~d~~~~~~~~l~~v~l~G~Igii~NGaGlam~t~D~l~~~g~gg--~pAN~lDlgG~a~~~~~~ 157 (266)
.+|.++++|+|.++.++|++++++++|+||+|+||||||+|||||+|+|||+|+.+ || +||||+|+||+|+.++++
T Consensus 240 ~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~--Gg~~~pANFlDvGGga~~e~v~ 317 (829)
T 3pff_A 240 PPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDL--GGVNELANYGEYSGAPSEQQTY 317 (829)
T ss_dssp CCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHT--TCTTTBCEEEEEESCCCHHHHH
T ss_pred ccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHc--CCCCCCceeEEecCCCCHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999 67 799999999999999999
Q ss_pred HHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhh
Q 024560 158 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEE 237 (266)
Q Consensus 158 ~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~ 237 (266)
++++.+++++++||+||+|||||||||++||+||+||+||++|+++....+...++||||||+|||+++|+++|+++.++
T Consensus 318 ~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~ 397 (829)
T 3pff_A 318 DYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKT 397 (829)
T ss_dssp HHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccc
Confidence 99888888888899999999999999999999999999999999997432223689999999999999999999999999
Q ss_pred cCCceeecCCCCCHHHHHHHHHHH
Q 024560 238 LGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 238 ~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
.|+|+++||++++|+++|++|+..
T Consensus 398 lgl~i~v~g~e~~mt~iv~~a~~~ 421 (829)
T 3pff_A 398 TGIPIHVFGTETHMTAIVGMALGH 421 (829)
T ss_dssp HCCCEEEECTTSCTTHHHHHHHTS
T ss_pred cCCcEEEeCCcccHHHHHHHHhcc
Confidence 999999999999999999999864
No 3
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=7.5e-60 Score=448.15 Aligned_cols=229 Identities=22% Similarity=0.306 Sum_probs=211.6
Q ss_pred CHhhHHHHHc--CCChhHHHHHHHHHHHHHHHHHhCCceeeEeeccee-cCCceEEeeccccccCcccccCccccccccC
Q 024560 2 TLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEF 78 (266)
Q Consensus 2 ~~~~~~~l~~--gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLvv-~~g~~~alD~k~~iDd~A~~R~~~~~~~~~~ 78 (266)
+++++..++. |+++...+++.+++.+||++|.++|++++|||||++ ++|+++|+|+|+.+||||+||||+ |..++.
T Consensus 156 ~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~-~~~~~~ 234 (388)
T 2nu8_B 156 MPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LREMRD 234 (388)
T ss_dssp CHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HHHHCC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcc-hhhhcC
Confidence 4555566655 678889999999999999999999999999999999 889999999999999999999998 765554
Q ss_pred CCCCCCCCChhhhhhcccccccccccCceEecCCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHH
Q 024560 79 PLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQ 158 (266)
Q Consensus 79 ~~~~~~~~~~~E~~a~~~d~~~~~~~~l~~v~l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~ 158 (266)
+ ++++|+|.+++ .++++|++|+||||||+||||++|+|||++..+ ||+||||+|+||+++.+++++
T Consensus 235 ~----~~~~~~e~~a~--------~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~--Gg~~aNflD~gG~a~~~~~~~ 300 (388)
T 2nu8_B 235 Q----SQEDPREAQAA--------QWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEPANFLDVGGGATKERVTE 300 (388)
T ss_dssp G----GGSCHHHHHHH--------HTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSCCCHHHHHH
T ss_pred c----cccChhHHHHH--------HhcCCccCCCCEEEEEeCCCchhhhhhHHHHHc--CCCcCceeEecCCCCHHHHHH
Confidence 4 78899999988 789999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhc
Q 024560 159 YARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEEL 238 (266)
Q Consensus 159 al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~ 238 (266)
+++++++ ||++|+|||||||||++|+.|| +||++|+++.. .++|||||++|+|+++++++|+ ++
T Consensus 301 ~~~~il~----d~~v~~ilvni~ggi~~~~~vA---~gii~a~~~~~-----~~~pivvrl~G~n~~~g~~~l~----~~ 364 (388)
T 2nu8_B 301 AFKIILS----DDKVKAVLVNIFGGIVRCDLIA---DGIIGAVAEVG-----VNVPVVVRLEGNNAELGAKKLA----DS 364 (388)
T ss_dssp HHHHHHT----STTCCEEEEEEESCSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEESTTHHHHHHHHH----TT
T ss_pred HHHHHhc----CCCCCEEEEEecCCcCCchHHH---HHHHHHHHhcC-----CCCeEEEEeCCCCHHHHHHHHH----HC
Confidence 9999999 9999999999999999999999 99999999973 6799999999999999999999 56
Q ss_pred CCceeecCCCCCHHHHHHHHHHHhhh
Q 024560 239 GIPLEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 239 Gip~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
|+|+++ ++||++|++++++++++
T Consensus 365 g~~~~~---~~~~~~aa~~~v~~~~~ 387 (388)
T 2nu8_B 365 GLNIIA---AKGLTDAAQQVVAAVEG 387 (388)
T ss_dssp CSSEEE---CSSHHHHHHHHHHHTTT
T ss_pred CCceec---CCCHHHHHHHHHHHhhc
Confidence 999985 45999999999999864
No 4
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=2.5e-59 Score=445.50 Aligned_cols=229 Identities=21% Similarity=0.316 Sum_probs=209.4
Q ss_pred CHhhHHHHHc--CCChhHHHHHHHHHHHHHHHHHhCCceeeEeeccee-cCCceEEeeccccccCcccccCccccccccC
Q 024560 2 TLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEF 78 (266)
Q Consensus 2 ~~~~~~~l~~--gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLvv-~~g~~~alD~k~~iDd~A~~R~~~~~~~~~~ 78 (266)
+++++..++. |+++...+++.+++.+||++|.++|++++|||||++ ++|+++|+|+|+.+||||+||||+++ .+
T Consensus 163 ~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~---~~ 239 (395)
T 2fp4_B 163 KDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF---AM 239 (395)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH---TT
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh---hh
Confidence 4555556655 778889999999999999999999999999999999 88899999999999999999999963 22
Q ss_pred CCCCCCCCChhhhhhcccccccccccCceEecCCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHH
Q 024560 79 PLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQ 158 (266)
Q Consensus 79 ~~~~~~~~~~~E~~a~~~d~~~~~~~~l~~v~l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~ 158 (266)
. +.++++|.|.+++ +++|+|++|+||||||+||||++|+|||++..+ ||+||||+|+||+++++++++
T Consensus 240 ~--d~~~~~~~e~~a~--------~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~--Gg~paNflDvgG~a~~e~~~~ 307 (395)
T 2fp4_B 240 D--DKSENEPIENEAA--------KYDLKYIGLDGNIACFVNGAGLAMATCDIIFLN--GGKPANFLDLGGGVKESQVYQ 307 (395)
T ss_dssp C--CCTTSCHHHHHHH--------HTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBCEEEECCSSCCHHHHHH
T ss_pred c--CCCccChhhhhHH--------HcCCceeccCCeEEEEecCchHHHHHHHHHHHc--CCCcCCcEEECCCCCHHHHHH
Confidence 2 4467889999988 889999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhc
Q 024560 159 YARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEEL 238 (266)
Q Consensus 159 al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~ 238 (266)
+++++++ ||++|+|||||||||++|+.|| +||++|+++.. .++|||||++|+|+++++++|+ ++
T Consensus 308 al~~il~----d~~v~~ilvni~ggi~~~d~vA---~gii~a~~~~~-----~~~Pivvrl~G~n~~~g~~~L~----~~ 371 (395)
T 2fp4_B 308 AFKLLTA----DPKVEAILVNIFGGIVNCAIIA---NGITKACRELE-----LKVPLVVRLEGTNVHEAQNILT----NS 371 (395)
T ss_dssp HHHHHHH----CTTCCEEEEEEEESSSCHHHHH---HHHHHHHHHHT-----CCSCEEEEEEETTHHHHHHHHH----HT
T ss_pred HHHHHhC----CCCCCEEEEEecCCccCcHHHH---HHHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHH----HC
Confidence 9999999 9999999999999999999999 99999999973 5799999999999999999999 56
Q ss_pred CCceeecCCCCCHHHHHHHHHHHhhh
Q 024560 239 GIPLEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 239 Gip~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
|+|++++ ++|++|++++++++++
T Consensus 372 gl~~~~~---~~~~~Aa~~~v~~~~~ 394 (395)
T 2fp4_B 372 GLPITSA---VDLEDAAKKAVASVTK 394 (395)
T ss_dssp CSCCEEC---SSHHHHHHHHHHTTC-
T ss_pred CCceEeC---CCHHHHHHHHHHHhhc
Confidence 9999864 5999999999999864
No 5
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=5.7e-56 Score=422.59 Aligned_cols=227 Identities=21% Similarity=0.291 Sum_probs=207.2
Q ss_pred CHhhHHHHHc--CCChhHHHHHHHHHHHHHHHHHhCCceeeEeeccee-cCCceEEeeccccccCcccccCccccccccC
Q 024560 2 TLDACAPLIA--TLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWANIEF 78 (266)
Q Consensus 2 ~~~~~~~l~~--gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLvv-~~g~~~alD~k~~iDd~A~~R~~~~~~~~~~ 78 (266)
+++++..++. |+++. ++++.+++.+||++|.++|++++|||||++ ++|+++|+|+|+++||||+||||+ |..+.+
T Consensus 148 ~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~-~~~~~~ 225 (397)
T 3ufx_B 148 RPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPD-LAELRE 225 (397)
T ss_dssp CHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHH-HHTTHH
T ss_pred CHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchh-hhhhcC
Confidence 3444455443 77888 999999999999999999999999999999 889999999999999999999998 655554
Q ss_pred CCCCCCCCChhhhhhcccccccccccCceEecCCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHH
Q 024560 79 PLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQ 158 (266)
Q Consensus 79 ~~~~~~~~~~~E~~a~~~d~~~~~~~~l~~v~l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~ 158 (266)
+ ++++|+|.+|+ +++|+||+++||||||+||+|++|+|+|++..+ ||+|+||+|+||++++++|++
T Consensus 226 ~----~~~~~~e~~a~--------~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~--G~~~aN~lD~gG~a~~e~~~~ 291 (397)
T 3ufx_B 226 V----EAEHPLEVEAS--------NYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRV--GGKPANFLDIGGGAKADVVYN 291 (397)
T ss_dssp H----HCSSHHHHHHH--------HTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCBSEEEECCSCCCHHHHHH
T ss_pred c----ccCCHhHHHHH--------HcCCCcccCCCcEEEEecCccHHHHHHHHHHHc--CCCcCCcEecCCCCCHHHHHH
Confidence 4 78999999988 899999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhc
Q 024560 159 YARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEEL 238 (266)
Q Consensus 159 al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~ 238 (266)
+++++++ ||++|+||||||||+++|++|| ++|++++++.. .++|||+|+.|+|.++++++|+ ++
T Consensus 292 al~~~l~----d~~v~~ilv~i~ggi~~~~~vA---~~i~~a~~~~~-----~~kPvvv~~~G~~~~~~~~~l~----~~ 355 (397)
T 3ufx_B 292 ALKVVLK----DPDVKGVFINIFGGITRADEVA---KGVIRALEEGL-----LTKPVVMRVAGTAEEEAKKLLE----GK 355 (397)
T ss_dssp HHHHHHT----CTTCCEEEEEEEEEEEESHHHH---HHHHHHHTTTC-----CCSCEEEEEEEECHHHHHHHTT----TS
T ss_pred HHHHHHc----CCCCCEEEEECCCCCCCHHHHH---HHHHHHHHhhC-----CCCcEEEEccCCCHHHHHHHHH----hC
Confidence 9999999 9999999999999999999999 99999988762 5799999998899999999999 66
Q ss_pred CCceeecCCCCCHHHHHHHHHHHhhhc
Q 024560 239 GIPLEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 239 Gip~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
|||. |++|++||++++++++.+
T Consensus 356 gip~-----~~~~e~Aa~~~~~l~~~a 377 (397)
T 3ufx_B 356 PVYM-----YPTSIEAAKVTVAMKGGA 377 (397)
T ss_dssp SEEE-----CSSHHHHHHHHHHSCCSC
T ss_pred CCcc-----cCCHHHHHHHHHHHHHHh
Confidence 9887 679999999999988654
No 6
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.90 E-value=2.2e-23 Score=201.34 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=131.4
Q ss_pred cccccCccccccccCCCCCCCCCChhhhhhcccccccccccCceEecC--CCcEEEEecCchHHHHHHHHHHhcCCCCC-
Q 024560 64 TAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNP--KGRIWTMVAGGGASVIYADTVGDLGYASE- 140 (266)
Q Consensus 64 ~A~~R~~~~~~~~~~~~~~~~~~~~~E~~a~~~d~~~~~~~~l~~v~l--~G~Igii~NGaGlam~t~D~l~~~g~gg~- 140 (266)
+|+|||+.+. +..++.|.... ...++| .+ ++||+||+||||++|+++|++..+ |++
T Consensus 262 ~AafRqaGv~----------~v~~~~El~~~--------~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~--Gl~l 320 (457)
T 2csu_A 262 EAAFKQSGVL----------VANTIDEMLSM--------ARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKR--GLKL 320 (457)
T ss_dssp HHHHHHTTCE----------EESSHHHHHHH--------HTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTT--TCEE
T ss_pred HHHHHhCCCe----------EECCHHHHHHH--------HHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHc--CCCC
Confidence 5789999742 22344554433 334556 55 899999999999999999999998 687
Q ss_pred --------------------CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe----cccccchhHhhhhHHH
Q 024560 141 --------------------LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI----GGGIANFTDVATTFNG 196 (266)
Q Consensus 141 --------------------pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni----~ggi~~~~~vA~~~~g 196 (266)
|+||+|++|++++++|.++++++++ ||++++||+++ +||+. |+++| ++
T Consensus 321 ~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~----dp~vd~vlv~~~~~~~Gg~~-~~~~a---~~ 392 (457)
T 2csu_A 321 ATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ----DPNVDMLIAICVVPTFAGMT-LTEHA---EG 392 (457)
T ss_dssp CCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH----STTCSEEEEEEECCCSTTCC-SSHHH---HH
T ss_pred CCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhc----CCCCCEEEEEccccccccCC-chhHH---HH
Confidence 6899999999999999999999999 99999999997 34455 88889 99
Q ss_pred HHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 197 IIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 197 ii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+++++++.. .++|+++ |++|++.++++++|+ ++|||+ |.++++|++++..+++
T Consensus 393 i~~al~~~~-----~~kPvvv~~~~g~~~~~~~~~L~----~~Gip~-----~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 393 IIRAVKEVN-----NEKPVLAMFMAGYVSEKAKELLE----KNGIPT-----YERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHHHC-----CCCCEEEEEECTTTTHHHHHHHH----TTTCCE-----ESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCEEEEeCCCcchHHHHHHHH----hCCCCc-----cCCHHHHHHHHHHHHH
Confidence 999998863 4689887 999999999999999 679998 5799999999988875
No 7
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.32 E-value=8.4e-12 Score=121.14 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCC---------------------------CCceeeccCCCCHHHHHHHHHHHH
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASE---------------------------LGNYAEYSGAPNEEEVLQYARVVI 164 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~---------------------------pAN~lDlgG~a~~~~~~~al~~ll 164 (266)
+.||++++||||++.++.|++.. |.+.. .+||+|+. ++++|.++++.++
T Consensus 249 G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l 324 (480)
T 3dmy_A 249 SGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLG 324 (480)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHh
Confidence 67899999999999999999987 31111 24777776 7789999999999
Q ss_pred hhhccCCCCCeEEEE-e--cccccch-hHhhhhHHHHHHHHHHhhhhhhcccce--EEEEeCCCC-H----HHHHHHHHh
Q 024560 165 DCATADPDGRKRALL-I--GGGIANF-TDVATTFNGIIRALREKESKLKAARMH--IFVRRGGPN-Y----QTGLAKMRA 233 (266)
Q Consensus 165 ~~~~~d~~v~~vlvn-i--~ggi~~~-~~vA~~~~gii~al~~~~~~~~~~~~p--vvvrl~G~~-~----~~~~~~L~~ 233 (266)
+ ||+++++++. + +++.+++ +++| ++|+++.++.. .++| +++|++|+. . ++++++|+
T Consensus 325 ~----D~~vd~vlv~~v~~~~~~~d~~~~~a---~ai~~~~~~~~-----~~kp~v~v~~~~g~~~~~~~~~~~~~~L~- 391 (480)
T 3dmy_A 325 A----KPQVRVLLLDVVIGFGATADPAASLV---SAWQKACAARL-----DNQPLYAIATVTGTERDPQCRSQQIATLE- 391 (480)
T ss_dssp G----CTTEEEEEEEEECSTTSCSCHHHHHH---HHHHHHHHTSC-----TTSCCEEEEEEESCTTSTTCHHHHHHHHH-
T ss_pred c----CCCCCEEEEEeecCCCCCCChHHHHH---HHHHHHHHhcc-----CCCCeEEEEEecCcccchhhHHHHHHHHH-
Confidence 9 9999999985 3 6777775 8888 98888765431 2467 446999874 2 35678999
Q ss_pred hhhhcCCceeecCCCCCHHHHHHHHHHHhhh
Q 024560 234 LGEELGIPLEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 234 ~~~~~Gip~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++|||+ |.++++||+.+..+++.
T Consensus 392 ---~aGIp~-----f~spe~Av~a~~~l~~~ 414 (480)
T 3dmy_A 392 ---DAGIAV-----VSSLPEATLLAAALIHP 414 (480)
T ss_dssp ---HTTCEE-----CSSHHHHHHHHHHHTSC
T ss_pred ---hCCCcc-----cCCHHHHHHHHHHHHhc
Confidence 779998 77999999999988753
No 8
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.80 E-value=5.7e-09 Score=91.51 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCC--ceeeEeeccee-cCC-ceEEeeccccccCc
Q 024560 16 EFRGKIGDFIMGVFAVFQDLD--FSFIEMNPFTL-VNG-EPYPLDMRGELDDT 64 (266)
Q Consensus 16 ~~~~~~~~ii~~Ly~~f~~~D--~~l~EINPLvv-~~g-~~~alD~k~~iDd~ 64 (266)
-.++.+.+++.+||++|.+.| +.++|||||++ ++| +++|+|+|+.+|||
T Consensus 185 ~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~~~~~~~ 237 (238)
T 1wr2_A 185 ADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238)
T ss_dssp BCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEEEEeCCC
Confidence 568899999999999999998 99999999999 887 89999999999997
No 9
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.54 E-value=0.00039 Score=67.36 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=91.7
Q ss_pred CCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCC-----CHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 111 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-----NEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 111 l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a-----~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
..|+||+++-.|+++...+|.+...| --...|+-+|+.+ ..-.+.+.++.+.+ ||++++|++-+=+ +
T Consensus 111 ~~G~vaivSqSGal~~~i~~~~~~~g--~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~----Dp~T~~I~ly~E~-~- 182 (480)
T 3dmy_A 111 PEGNIGVIGASGTGIQELCSQIALAG--EGITHAIGLGGRDLSREVGGISALTALEMLSA----DEKSEVLAFVSKP-P- 182 (480)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCTTTTSTTTTTHHHHHHHHHHHT----CTTCCEEEEEESC-C-
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcC--CCceEEEEcCCCccccccCCCCHHHHHHHHhc----CCCCCEEEEEEec-C-
Confidence 47999999999999999999999984 4467889999983 44568899888888 9999999987643 2
Q ss_pred chhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 186 NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
.+.++ +.++++.+. .++|||+...|.+... |+ ++|+-. .++++|....+..++.
T Consensus 183 -~e~~~---~~f~~~ar~-------~~KPVV~~k~Grs~~g----~r----~~Gvir-----v~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 183 -AEAVR---LKIVNAMKA-------TGKPTVALFLGYTPAV----AR----DENVWF-----ASSLDEAARLACLLSR 236 (480)
T ss_dssp -CHHHH---HHHHHHHHH-------HCSCEEEEETTCCCSS----SE----ETTEEE-----ESSHHHHHHHHHHHHH
T ss_pred -CcHHH---HHHHHHHHh-------CCCCEEEEEeCCCCcc----cc----cCCEEE-----ECCHHHHHHHHHHHhc
Confidence 45555 666666653 3699999777765433 55 678743 4599998888776654
No 10
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.42 E-value=0.0008 Score=62.33 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=72.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCCeEEEEe-cccccch
Q 024560 111 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANF 187 (266)
Q Consensus 111 l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~--a~~~~~~~al~~ll~~~~~d~~v~~vlvni-~ggi~~~ 187 (266)
..|+||+++-.|+++...+|.+...| --...++-+|++ ++- .+.+.++.+.+ ||+.++|++.. .+|+..
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g--~G~S~~VsiGn~~~~d~-~~~D~l~~~~~----Dp~T~~I~l~gEi~g~~e- 238 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTT--DGVYEGVAIGGDRYPGS-TFMDHVLRYQD----TPGVKMIVVLGEIGGTEE- 238 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHS--SCEEEEEECCSSSSCSS-CHHHHHHHHHT----CTTCCEEEEEEESSSSHH-
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcC--CCeEEEEECCCCccCCC-CHHHHHHHHhc----CCCCCEEEEEEecCChHH-
Confidence 36899999999999999999999984 435678899998 553 48888888888 99999998872 566543
Q ss_pred hHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 024560 188 TDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 225 (266)
Q Consensus 188 ~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 225 (266)
. -.++++++.. .++|||++..|..+.
T Consensus 239 ~-------~~~~~~r~~~-----~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 239 Y-------KICRGIKEGR-----LTKPIVCWCIGTCAT 264 (334)
T ss_dssp H-------HHHHHHHTTS-----CCSCEEEEEECTTCC
T ss_pred H-------HHHHHHHhhc-----CCCCEEEEEcCCCcc
Confidence 2 2345555532 579999987776654
No 11
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=97.34 E-value=0.00093 Score=60.93 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=88.3
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCeEEEEe-cccccchhH
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 189 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~-~~~~~~al~~ll~~~~~d~~v~~vlvni-~ggi~~~~~ 189 (266)
.|+||+++-.|+++...+|.+...| --...++-+|+++. .-.+.+.++.+.+ ||++++|++-+ .+| +.++
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~S~~vs~G~~~~~~~~~~d~l~~~~~----Dp~T~~I~l~~E~~g--~~e~ 223 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQVG--LGQSLCVGIGGDPFNGTDFTDCLEIFLN----DPATEGIILIGEIGG--NAEE 223 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSCCHHHHHHHHHH----CTTCCEEEEEEESSS--SHHH
T ss_pred CCCEEEEecchHHHHHHHHHHHhcC--CCeeEEeccCCCcCCCCCHHHHHHHHhc----CCCCcEEEEEEecCC--chhh
Confidence 5899999999999999999999984 44678899999873 3468888888888 99999999886 333 2333
Q ss_pred hhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH--------------------HHHHHHHhhhhhcCCceeecCCCC
Q 024560 190 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ--------------------TGLAKMRALGEELGIPLEVYGPEA 249 (266)
Q Consensus 190 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~--------------------~~~~~L~~~~~~~Gip~~~~~~~~ 249 (266)
-+ +.++++.++. ..++|||++..|.... .-...|+ ++|+.. ..+.+
T Consensus 224 ~~---~~f~~~~~~~-----~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~----~aGv~~--v~~~~ 289 (305)
T 2fp4_A 224 NA---AEFLKQHNSG-----PKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQ----SAGVVV--SMSPA 289 (305)
T ss_dssp HH---HHHHHHHSCS-----TTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHH----HTTCEE--CSSTT
T ss_pred HH---HHHHHHHHHh-----cCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHH----HCCCeE--eCCHH
Confidence 34 4555544332 2479999866665541 1244555 789854 22355
Q ss_pred CHHHHHHHHHH
Q 024560 250 TMTGICKQAID 260 (266)
Q Consensus 250 ~~~eAv~~av~ 260 (266)
.+-++++.+++
T Consensus 290 el~~~~~~~~~ 300 (305)
T 2fp4_A 290 QLGTTIYKEFE 300 (305)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66667766664
No 12
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=97.30 E-value=0.0021 Score=57.96 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=82.1
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHh
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 190 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~-~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~v 190 (266)
.|+||+++-.|+++...+|.+...| --...|+-+|+++.. -.+.+.++.+.+ ||+.++|++-+=++- +.++.
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~t~~I~l~~E~~~-~~~~~ 216 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAG--LGTTTTVGIGGDPVIGTTFKDLLPLFNE----DPETEAVVLIGEIGG-SDEEE 216 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSCCSSCHHHHHHHHHT----CTTCCEEEEEECSSS-SHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC-CHHHH
Confidence 5899999999999999999999984 446788999999842 357788888888 999999998863222 23232
Q ss_pred hhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH----------------HHHhhhhhcCCceeecCCCCCHHHH
Q 024560 191 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA----------------KMRALGEELGIPLEVYGPEATMTGI 254 (266)
Q Consensus 191 A~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~----------------~L~~~~~~~Gip~~~~~~~~~~~eA 254 (266)
+ ...+++ . .++|||++..|.....+++ ......+++|+.. .++++|.
T Consensus 217 ~---~~~~~~---~------~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~-----~~~~~el 279 (288)
T 1oi7_A 217 A---AAWVKD---H------MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPV-----ADTIDEI 279 (288)
T ss_dssp H---HHHHHH---H------CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCB-----CSSHHHH
T ss_pred H---HHHHHh---c------CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeE-----eCCHHHH
Confidence 3 222222 1 4799999888876633322 1222333678764 4577776
Q ss_pred HHHHHH
Q 024560 255 CKQAID 260 (266)
Q Consensus 255 v~~av~ 260 (266)
...+.+
T Consensus 280 ~~~~~~ 285 (288)
T 1oi7_A 280 VELVKK 285 (288)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 13
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.0021 Score=58.25 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEe-cccccchhH
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 189 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~-~~~~~al~~ll~~~~~d~~v~~vlvni-~ggi~~~~~ 189 (266)
.|+||+++-.|+++...+|.+...| --...++-+|+++.. -.+.+.++.+.+ ||++++|++-+ .+|- .+.
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~g~--~~~ 221 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAG--FGVSTCVGIGGDPIVGLRYKEVLDLFEK----DDETEAIVMIGEIGGG--AEE 221 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEEESSSS--HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--CCeEEEEeeCCCCCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCCC--HHH
Confidence 5999999999999999999999984 446788999999842 357788888888 99999999886 3332 222
Q ss_pred hhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 024560 190 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 224 (266)
Q Consensus 190 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~ 224 (266)
.+ .+.+++ .++|||++..|...
T Consensus 222 ~~------~~~~~~-------~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 222 EA------AKFIEK-------MKKPVIGYIAGQSA 243 (294)
T ss_dssp HH------HHHHTT-------CSSCEEEEEECC--
T ss_pred HH------HHHHHh-------CCCCEEEEEecCCC
Confidence 12 111221 36999997777665
No 14
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=97.07 E-value=0.0025 Score=57.75 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCH-HHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHh
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE-EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 190 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~-~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~v 190 (266)
.|+||+++-.|+++...+|.+...| --...|+-+|+++.. -.+.+.++.+.+ ||++++|++-+=++ .+.+..
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~~~~----D~~T~~I~l~~E~~-~~~~~~ 223 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQG--IGQSTVIGIGGDPIVGLSFTEALKLFQE----DPQTEALVLIGEIG-GDMEER 223 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCSEEEEEECSS-SSHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCeeEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeC-CCHHHH
Confidence 5899999999999999999999984 446788999999842 357788888888 99999999886322 123232
Q ss_pred hhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 024560 191 ATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 227 (266)
Q Consensus 191 A~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~ 227 (266)
+ ...++ .. ..++|||++..|.....+
T Consensus 224 ~---~~~~~---~~-----~~~KPVv~~k~G~s~~~~ 249 (297)
T 2yv2_A 224 A---AEMIK---KG-----EFTKPVIAYIAGRTAPPE 249 (297)
T ss_dssp H---HHHHH---TT-----SCCSCEEEEESCCC----
T ss_pred H---HHHHH---hc-----cCCCCEEEEEeCCCCccc
Confidence 3 22222 22 147999998888776333
No 15
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=96.90 E-value=0.0037 Score=56.29 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=67.9
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCC-HHHHHHHHHHHHhhhccCCCCCeEEEEe-cccccchhH
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN-EEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFTD 189 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~-~~~~~~al~~ll~~~~~d~~v~~vlvni-~ggi~~~~~ 189 (266)
.|+||+++-.|+++...+|.+...| --...++-+||.+. .-.+.+.++.+.+ ||++++|++-+ .+| +.++
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~g--~G~s~~vs~G~~~~~~~~~~d~l~~l~~----D~~t~~I~l~~E~~~--~~~~ 215 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDYG--FGQSTCVGIGGDPIPGSNFIDILEMFEK----DPQTEAIVMIGEIGG--SAEE 215 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTT--CCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS--SHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhcC--CCEEEEEeeCCCcCCCCCHHHHHHHHhc----CCCCCEEEEEEeeCC--CHHH
Confidence 5899999999999999999998884 44567888999874 3457888888888 99999999886 333 2333
Q ss_pred hhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCH
Q 024560 190 VATTFNGIIRALREKESKLKAARMHIFVRRGGPNY 224 (266)
Q Consensus 190 vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~ 224 (266)
.+ +..+++ . .++|||++..|...
T Consensus 216 ~~---~~~~~~----~-----~~KPVv~~k~G~~~ 238 (288)
T 2nu8_A 216 EA---AAYIKE----H-----VTKPVVGYIAGVTA 238 (288)
T ss_dssp HH---HHHHHH----H-----CCSCEEEEEECTTC
T ss_pred HH---HHHHHh----c-----CCCCEEEEEeCCCC
Confidence 33 333333 1 47999986666554
No 16
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.62 E-value=0.012 Score=60.54 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCC-CHHHHHHHHHHHHhhhccCCCCCeEEEEe-cccccchh
Q 024560 111 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATADPDGRKRALLI-GGGIANFT 188 (266)
Q Consensus 111 l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a-~~~~~~~al~~ll~~~~~d~~v~~vlvni-~ggi~~~~ 188 (266)
..|+||+++-.|+++...+|.+...| ---..++-+||++ ..-.+...++.+.+ ||++++|++.. .+| ....
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g--~G~S~~VsiGnd~~~d~~~~D~L~~l~~----Dp~T~~Ivly~Ei~g-~~f~ 725 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTT--DGVYEGVAIGGDRYPGSTFMDHVLRYQD----TPGVKMIVVLGEIGG-TEEY 725 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHS--SCEEEEEECCSSSSCSSCHHHHHHHHHT----CTTCCEEEEEEESSS-SHHH
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcC--CCeEEEEecCCCCCCCCCHHHHHHHHhh----CCCCCEEEEEEecCc-hHHH
Confidence 46899999999999999999999995 3346788999985 23457888888888 99999999885 443 2333
Q ss_pred HhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 024560 189 DVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 225 (266)
Q Consensus 189 ~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 225 (266)
++| +++++. ..++|||++..|..+.
T Consensus 726 ~aA-------~~~~~~-----~~~KPVVa~kaGrsa~ 750 (829)
T 3pff_A 726 KIC-------RGIKEG-----RLTKPIVCWCIGTCAT 750 (829)
T ss_dssp HHH-------HHHHTT-----SCCSCEEEEEECSSTT
T ss_pred HHH-------HHHHhc-----cCCCCEEEEEecCcCc
Confidence 333 233321 1479999987777654
No 17
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=96.44 E-value=0.012 Score=56.23 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=66.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhh
Q 024560 113 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAT 192 (266)
Q Consensus 113 G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~ 192 (266)
|+||+++-.|+++...+|.+...| --...++-+|+.++- .+.+.++.+.+ ||++++|++.+=+ +.+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g--~G~s~~vs~G~~~~~-~~~d~l~~~~~----D~~t~~I~l~~E~-i~~~----- 216 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKED--IGFSKFISVGNMADV-DFAELMEYLAD----TEEDKAIALYIEG-VRNG----- 216 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTT--CEESEEEECTTCCSS-CHHHHHHHHTT----CSSCCEEEEEESC-CSCH-----
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcC--CCeeEEEECCCcCCC-CHHHHHHHHhc----CCCCCEEEEEEec-CCCH-----
Confidence 999999999999999999999984 445788999999864 58888888777 9999999988522 1111
Q ss_pred hHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 024560 193 TFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 225 (266)
Q Consensus 193 ~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 225 (266)
+...++.+... .++|||+...|....
T Consensus 217 --~~f~~~a~~~~-----~~KPVv~~k~G~~~~ 242 (457)
T 2csu_A 217 --KKFMEVAKRVT-----KKKPIIALKAGKSES 242 (457)
T ss_dssp --HHHHHHHHHHH-----HHSCEEEEECC----
T ss_pred --HHHHHHHHHhc-----CCCCEEEEEcCCCcc
Confidence 23333444332 259999977776644
No 18
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=88.55 E-value=3.1 Score=33.72 Aligned_cols=111 Identities=22% Similarity=0.225 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|+-++ ..++...| -.-+++|.+.+++.+.+++ . ..+.+.|.+-.. .+..-... +.+++.++
T Consensus 34 G~~~v-a~~l~~~G-----~eVi~lG~~~p~e~lv~aa---~-----~~~~diV~lS~~--~~~~~~~~---~~~i~~L~ 94 (161)
T 2yxb_A 34 GAKVV-ARALRDAG-----FEVVYTGLRQTPEQVAMAA---V-----QEDVDVIGVSIL--NGAHLHLM---KRLMAKLR 94 (161)
T ss_dssp HHHHH-HHHHHHTT-----CEEECCCSBCCHHHHHHHH---H-----HTTCSEEEEEES--SSCHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHCC-----CEEEECCCCCCHHHHHHHH---H-----hcCCCEEEEEee--chhhHHHH---HHHHHHHH
Confidence 55554 35666652 3567788889999877662 2 234555665432 22333333 77778887
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 203 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+... .+.| +++||.-..+-.+.++ +.|+.. +|.+-++++++++.+.++.+
T Consensus 95 ~~g~----~~i~--v~vGG~~~~~~~~~l~----~~G~d~-v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 95 ELGA----DDIP--VVLGGTIPIPDLEPLR----SLGIRE-IFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HTTC----TTSC--EEEEECCCHHHHHHHH----HTTCCE-EECTTCCHHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEeCCCchhcHHHHH----HCCCcE-EECCCCCHHHHHHHHHHHHH
Confidence 7531 2344 5567876555555567 568873 34445677889988877654
No 19
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=78.63 E-value=23 Score=31.17 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=71.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++ .|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~ 78 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIE-----NGVSGIVAVGTTGESPTLSHEE-HKKVIEKVVDVVN----GRVQVIAGAGS 78 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 35677 889999999999999886 5899999883333222211111 1345555554431 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++-+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 79 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a 124 (289)
T 2yxg_A 79 NCTEEAIELSVFA-EDVGADAVLSITPYYN--KPTQEGLRKHFGKVAES 124 (289)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 9999998877743 345632 1222 23778888888777764
No 20
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=78.35 E-value=12 Score=29.29 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|+-++ ..++...| -.-+++|.+.+++.+.++++- .+.+.|.+-.. .+...... +.+++.++
T Consensus 19 G~~~v-~~~l~~~G-----~~Vi~lG~~~p~e~~v~~a~~--------~~~d~v~lS~~--~~~~~~~~---~~~i~~l~ 79 (137)
T 1ccw_A 19 GNKIL-DHAFTNAG-----FNVVNIGVLSPQELFIKAAIE--------TKADAILVSSL--YGQGEIDC---KGLRQKCD 79 (137)
T ss_dssp HHHHH-HHHHHHTT-----CEEEEEEEEECHHHHHHHHHH--------HTCSEEEEEEC--SSTHHHHH---TTHHHHHH
T ss_pred HHHHH-HHHHHHCC-----CEEEECCCCCCHHHHHHHHHh--------cCCCEEEEEec--CcCcHHHH---HHHHHHHH
Confidence 55544 35666652 456789999999988777433 23445555432 23333334 67778887
Q ss_pred HhhhhhhcccceEEEEeCCCC------HHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 203 EKESKLKAARMHIFVRRGGPN------YQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~------~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
+... .+++ +++||.- ..+-.+.++ +.|+.- +|++-++..++++..++..
T Consensus 80 ~~g~----~~i~--v~vGG~~~~~~~~~~~~~~~~~----~~G~d~-~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 80 EAGL----EGIL--LYVGGNIVVGKQHWPDVEKRFK----DMGYDR-VYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTC----TTCE--EEEEESCSSSSCCHHHHHHHHH----HTTCSE-ECCTTCCHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEECCCcCchHhhhhhHHHHH----HCCCCE-EECCCCCHHHHHHHHHHHh
Confidence 7531 2344 4566642 333345677 679964 4556788999988887654
No 21
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=77.35 E-value=28 Score=30.64 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=71.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++ .|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 79 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHVD-----NGTDAILVCGTTGESPTLTFEE-HEKVIEFAVKRAA----GRIKVIAGTGGN 79 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHT-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCcC-CCCcCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 4667 788999999999998885 6899999883322222111111 1345555554431 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 80 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 124 (294)
T 2ehh_A 80 ATHEAVHLTAHA-KEVGADGALVVVPYYN--KPTQRGLYEHFKTVAQE 124 (294)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 999998877743 345632 1222 23778888888877764
No 22
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=76.31 E-value=10 Score=28.00 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=37.7
Q ss_pred ccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhhhc
Q 024560 211 ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 211 ~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
..+|+|+...|.....-.+.-++. ++-|+...+.. .++|+|.-++..+..+.|
T Consensus 50 ngkplvvfvngasqndvnefqnea-kkegvsydvlk-stdpeeltqrvreflkta 102 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEA-KKEGVSYDVLK-STDPEELTQRVREFLKTA 102 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHH-HHHTCEEEEEE-CCCHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEecCcccccHHHHHHHH-HhcCcchhhhc-cCCHHHHHHHHHHHHHhc
Confidence 579999999998877665555543 34488877665 778998877766665443
No 23
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=76.15 E-value=32 Score=30.31 Aligned_cols=106 Identities=10% Similarity=-0.039 Sum_probs=60.7
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeecc-----------CC---CCHHHHHHHHHHHH-hhhccCCCCCeEEE
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYS-----------GA---PNEEEVLQYARVVI-DCATADPDGRKRAL 178 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlg-----------G~---a~~~~~~~al~~ll-~~~~~d~~v~~vlv 178 (266)
|||+|+.||-.+-..+..+... +.+..-.+|.. +. .+.+.+.+.++-+. + ++++++|+|
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~----~~~vD~V~I 78 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDR----GEGVDYLSI 78 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHT----TCCCSEEEE
T ss_pred EEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhccc----CCCCcEEEE
Confidence 6899988654555667888776 44432122211 11 12233333222222 4 899999988
Q ss_pred EecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 179 LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 179 ni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
-.|... +++-+.++++ ..++|++ .=-..+.++++++++. +++.|+.+
T Consensus 79 ~tP~~~--------H~~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~g~~~ 126 (312)
T 3o9z_A 79 ASPNHL--------HYPQIRMALR--------LGANALSEKPLVLWPEEIARLKEL-EARTGRRV 126 (312)
T ss_dssp CSCGGG--------HHHHHHHHHH--------TTCEEEECSSSCSCHHHHHHHHHH-HHHHCCCE
T ss_pred CCCchh--------hHHHHHHHHH--------CCCeEEEECCCCCCHHHHHHHHHH-HHHcCCEE
Confidence 765431 1244445544 2477777 5556688999888774 45568765
No 24
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=74.80 E-value=6.5 Score=33.82 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEe--ccccc-chhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 024560 150 APNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIA-NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 226 (266)
Q Consensus 150 ~a~~~~~~~al~~ll~~~~~d~~v~~vlvni--~ggi~-~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ 226 (266)
..+.+.+.++++-+.+ |+++++|++.+ +||-. .+ +.+.++++.... ..++||++.+.|.-...
T Consensus 28 ~~~~~~l~~~l~~a~~----d~~v~~ivL~~~s~Gg~~~~~-------~~i~~~l~~~~~---~~~kPVia~v~g~a~~g 93 (240)
T 3rst_A 28 GYNHRTFLKNLERAKD----DKTVKGIVLKVNSPGGGVYES-------AEIHKKLEEIKK---ETKKPIYVSMGSMAASG 93 (240)
T ss_dssp CCCHHHHHHHHHHHHH----CTTEEEEEEEEEECCBCHHHH-------HHHHHHHHHHHH---HHCCCEEEEEEEEEETH
T ss_pred CcCHHHHHHHHHHHHh----CCCcEEEEEEecCCCCCHHHH-------HHHHHHHHHHHH---hCCCeEEEEECCeehHh
Confidence 3467888899888877 99999999875 54422 22 334445554421 03689998887765555
Q ss_pred HHHH
Q 024560 227 GLAK 230 (266)
Q Consensus 227 ~~~~ 230 (266)
|-.+
T Consensus 94 G~~l 97 (240)
T 3rst_A 94 GYYI 97 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 25
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=74.26 E-value=29 Score=30.81 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++ .|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+
T Consensus 22 vTPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg~ 90 (306)
T 1o5k_A 22 VTPFK-NGELDLESYERLVRYQLE-----NGVNALIVLGTTGESPTVNEDE-REKLVSRTLEIVD----GKIPVIVGAGT 90 (306)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEcCCC
Confidence 46778 899999999999999986 5899999883222221111111 1445555554432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++-.++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 91 ~st~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 136 (306)
T 1o5k_A 91 NSTEKTLKLVKQA-EKLGANGVLVVTPYYN--KPTQEGLYQHYKYISER 136 (306)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 9999998877743 345632 1222 23778888888777754
No 26
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=73.08 E-value=20 Score=31.02 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=52.0
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+... -..+.+..+ |.++-...-+.++.+.+.-+++++-+|+ ..|++++||. .
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 249 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVA-------S 249 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHHH---TTCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC--CCCCCcceEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------C
Confidence 67999865433221 245677777 4443322334566777777788777775 2678888884 3
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| -|+++++++.+
T Consensus 250 nd~~A---~g~~~al~~~G 265 (338)
T 3dbi_A 250 NDDMA---IGAMKALHERG 265 (338)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 67888 99999999885
No 27
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=73.08 E-value=32 Score=30.33 Aligned_cols=108 Identities=12% Similarity=-0.021 Sum_probs=60.6
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeecc-----------CC---CCHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYS-----------GA---PNEEEVLQYARVVIDCATADPDGRKRALL 179 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlg-----------G~---a~~~~~~~al~~ll~~~~~d~~v~~vlvn 179 (266)
|||+|+.||-.+-..+..+... +.+..-.+|.. +. .+.+.+.+.++.+++ ..++++++|+|-
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~--~~~~~vD~V~I~ 80 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKR--DSATALDYVSIC 80 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTT--STTTSCCEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhh--ccCCCCcEEEEC
Confidence 6899988654566677888776 44432122211 11 123333333233321 027899999876
Q ss_pred ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 180 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 180 i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
.|... +++-+.++++ ..++|++ .=-..+.++++++.+. +++.|+.+
T Consensus 81 tP~~~--------H~~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~g~~~ 127 (318)
T 3oa2_A 81 SPNYL--------HYPHIAAGLR--------LGCDVICEKPLVPTPEMLDQLAVI-ERETDKRL 127 (318)
T ss_dssp SCGGG--------HHHHHHHHHH--------TTCEEEECSSCCSCHHHHHHHHHH-HHHHTCCE
T ss_pred CCcHH--------HHHHHHHHHH--------CCCeEEEECCCcCCHHHHHHHHHH-HHHhCCEE
Confidence 55421 1244445544 2467777 5556788999888773 45568765
No 28
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=72.87 E-value=22 Score=27.05 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=56.7
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHH
Q 024560 146 EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 225 (266)
Q Consensus 146 DlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~ 225 (266)
.+-|.-+.++..+..+.+++.+.+ .+.+.+++++ +|..-.|... +..+....+.... ... =+.+.|-+.+
T Consensus 17 ~l~G~lD~~~a~~l~~~ll~~i~~-~~~~~vIlDl-sgV~~iDs~g--~~~L~~~~~~~~l----~G~--~~~l~Gi~p~ 86 (123)
T 3zxn_A 17 AIEETLHDQSVIQFKEELLHNITG-VAGKGLVIDI-SALEVVDEFV--TRVLIEISRLAEL----LGL--PFVLTGIKPA 86 (123)
T ss_dssp ECCCCC-CHHHHHHHHHHHHHHTS-SCCSEEEEEC-TTCSSCCHHH--HHHHHHHHHHHHH----HTC--CEEEECCCHH
T ss_pred EEeEeeCHHHHHHHHHHHHHHHHh-cCCCEEEEEc-CCCCcccHHH--HHHHHHHHHHHHH----CCC--EEEEEcCCHH
Confidence 455666666666666666654443 5677777774 4544444322 2555555554431 121 2344566655
Q ss_pred HHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 226 TGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 226 ~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
-+ +.|. .+|+....+.++.+.++|++.+-..++
T Consensus 87 va-~~l~----~~G~~l~~i~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 87 VA-ITLT----EMGLDLRGMATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp HH-HHHH----HTTCCSTTSEEESSHHHHHHHHHHHHT
T ss_pred HH-HHHH----HhCCCccceEEECCHHHHHHHHHHhhh
Confidence 44 5555 357642222246699999998877664
No 29
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.78 E-value=47 Score=29.45 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=73.1
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|+
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~ 93 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVD-----QGCDGLVVSGTTGESPTTTDGE-KIELLRAVLEAVG----DRARVIAGAGT 93 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCC
Confidence 456666788999999999999986 5899999983333222211111 1345555555432 46899999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++.+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 94 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 139 (304)
T 3l21_A 94 YDTAHSIRLAKAC-AAEGAHGLLVVTPYYS--KPPQRGLQAHFTAVADA 139 (304)
T ss_dssp SCHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 9999998887753 345642 1222 23778888888777764
No 30
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=69.32 E-value=48 Score=29.62 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=71.0
Q ss_pred ceee-ccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 143 NYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 143 N~lD-lgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
-|++ =.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. ..++||++-.|+
T Consensus 20 TPf~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~----~grvpviaGvg~ 89 (318)
T 3qfe_A 20 TFFDSKTDTLDLASQERYYAYLAR-----SGLTGLVILGTNAEAFLLTREE-RAQLIATARKAV----GPDFPIMAGVGA 89 (318)
T ss_dssp CCEETTTTEECHHHHHHHHHHHHT-----TTCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHH----CTTSCEEEECCC
T ss_pred CCccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHh----CCCCcEEEeCCC
Confidence 4566 5678899999999998885 6899999983333222211111 134555555443 246999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++..++.+..+.. +++|.. -++|..-.+.++.++.+-.++.+
T Consensus 90 ~~t~~ai~la~~a-~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a 137 (318)
T 3qfe_A 90 HSTRQVLEHINDA-SVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ 137 (318)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh
Confidence 9999998887753 345642 11121113678888888887764
No 31
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=69.10 E-value=42 Score=27.65 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=67.4
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+... ...+.+..+ |.++....-+.++.+.+..+++++-+|+ +.|.+++|+. .
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 188 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIEN--YLTPDHFLTTHEAPSSQLGAEGLAKLLL---RDSSLNALVC-------S 188 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHT--TCCCCCEEECSSCCCHHHHHHHHHHHHT---TCTTCCEEEE-------S
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHc--CCCCCccEEEeCCCChhHHHHHHHHHHh---CCCCCCEEEE-------c
Confidence 57999975433221 234667776 4443322223455677777777766665 2577888874 2
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-.++.. .+ +.+. -.+.+ + ..++.+..+.++++.
T Consensus 189 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~~-----p~ltt-v---~~~~~~~g~~a~~~l 247 (275)
T 3d8u_A 189 HEEIA---IGALFECHRRV-----LKVPTDIAIICLEGSS--MG-EHAY-----PSLTS-A---EFDYERMGTKAAEKL 247 (275)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEESSCCH--HH-HTSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEecCCch--Hh-hhcC-----CCcce-e---cCCHHHHHHHHHHHH
Confidence 67778 99999999874 3344 344555542 22 1111 13332 1 337777777776654
No 32
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=68.91 E-value=63 Score=28.68 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=72.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. ..++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~----~grvpviaGvg~~ 87 (309)
T 3fkr_A 18 TTFADTGDLDLASQKRAVDFMID-----AGSDGLCILANFSEQFAITDDE-RDVLTRTILEHV----AGRVPVIVTTSHY 87 (309)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSGGGTGGGSCHHH-HHHHHHHHHHHH----TTSSCEEEECCCS
T ss_pred CCCCcCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCcccCCHHH-HHHHHHHHHHHh----CCCCcEEEecCCc
Confidence 45555688999999999999886 6899999983333222211111 134555555543 1469999999999
Q ss_pred CHHHHHHHHHhhhhhcCCcee-ecCC------CCCHHHHHHHHHHHhhhc
Q 024560 223 NYQTGLAKMRALGEELGIPLE-VYGP------EATMTGICKQAIDCIMSA 265 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip~~-~~~~------~~~~~eAv~~av~~~~~~ 265 (266)
+-.++.+..+.. +++|..-. +.-+ -.+.++.++.+-.++.+.
T Consensus 88 ~t~~ai~la~~A-~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~ 136 (309)
T 3fkr_A 88 STQVCAARSLRA-QQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI 136 (309)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHH-HHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhc
Confidence 999998877753 44564211 1111 137788888888877653
No 33
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=68.52 E-value=50 Score=29.49 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=73.0
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=-|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|.
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gi~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 102 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-----GGVHAIAPLGSTGEGAYLSDPE-WDEVVDFTLKTVA----HRVPTIVSVSD 102 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 356666788999999999999986 6899999883333222211111 1445555555432 46999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
++.+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 103 ~~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 103 LTTAKTVRRAQFA-ESLGAEAVMVLPISYW--KLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEECCCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9999998887753 345642 1222 247788888888877653
No 34
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=68.26 E-value=63 Score=28.55 Aligned_cols=109 Identities=10% Similarity=0.070 Sum_probs=70.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=-|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 90 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQ-----QGIDGLYVGGSTGEAFVQSLSE-REQVLEIVAEEAK----GKIKLIAHVGCV 90 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECeeccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 44555688899999999999886 5899999883222221111111 1445555554431 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-.++.+..+.. +++|.. -+++. .+.++.++.+-.++.+
T Consensus 91 ~t~~ai~la~~A-~~~Gadavlv~~P~y~~--~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 91 STAESQQLAASA-KRYGFDAVSAVTPFYYP--FSFEEHCDHYRAIIDS 135 (303)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEEECCCSSC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCCCEEEecCCCCCC--CCHHHHHHHHHHHHHh
Confidence 999998877643 345632 12222 3778888888777754
No 35
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=68.10 E-value=28 Score=29.47 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=49.7
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+... ...+.+..+ |-.+..-.-..++.+.+.-+++++-+|+ +.|.+++||. .
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 194 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEA--GLMPLAGYLQKADPTRPGGYLAASRLLA---LEVPPTAIIT-------D 194 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTT--TCCCCTTCEEEECSSHHHHHHHHHHHHH---SSSCCSEEEE-------S
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHC--CCCCChhHeecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 56888865543222 234566666 3433222223455667777777777765 2578888874 3
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| -|+++++++.+
T Consensus 195 nd~~A---~g~~~al~~~G 210 (294)
T 3qk7_A 195 CNMLG---DGVASALDKAG 210 (294)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred CHHHH---HHHHHHHHHcC
Confidence 67888 99999999875
No 36
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=67.46 E-value=65 Score=28.33 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=72.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|++
T Consensus 17 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 86 (297)
T 3flu_A 17 TPMNQDGSIHYEQLRDLIDWHIE-----NGTDGIVAVGTTGESATLSVEE-HTAVIEAVVKHVA----KRVPVIAGTGAN 86 (297)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCc
Confidence 45555688999999999999886 6899999883333222211111 1345555554432 469999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
+.+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 87 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 87 NTVEAIALSQAA-EKAGADYTLSVVPYYN--KPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 999998887753 345632 1222 246788888887777653
No 37
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=67.17 E-value=36 Score=28.38 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=68.2
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++...+... ...+.+..+ |.......-..++.+.+..+++++-+|+ +.|++++|+..
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~------- 199 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLA--DIVLPKEYILHFDFSRESGQQAVEELMG---LQQPPTAIMAT------- 199 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHT---SSSCCSEEEES-------
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHc--CCCCChheEEecCCCHHHHHHHHHHHHc---CCCCCcEEEEc-------
Confidence 57999876544322 245667666 3433222223456677777777776665 36788888842
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-..+.. .+. .+. -++.+. ..++.+..+.++++.
T Consensus 200 ~d~~a---~g~~~al~~~g-----~~vP~di~vig~d~~~--~~~-~~~-----p~lttv----~~~~~~~g~~av~~l 258 (292)
T 3k4h_A 200 DDLIG---LGVLSALSKKG-----FVVPKDVSIVSFNNAL--LSE-IAS-----PPLSTV----DVNIYQLGYEAAKAL 258 (292)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCH--HHH-HSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHhC-----CCCCCeEEEEEecCcc--hhh-ccC-----CCceEE----ecCHHHHHHHHHHHH
Confidence 67788 99999999875 3333 234555542 221 111 133332 347777777777654
No 38
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=66.38 E-value=62 Score=28.83 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=72.5
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~ 101 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-----EGTNAIVAVGTTGESATLDVEE-HIQVIRRVVDQVK----GRIPVIAGTGA 101 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSGGGTGGGCCHHH-HHHHHHHHHHHHT----TSSCEEEECCC
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCC
Confidence 356666788999999999999886 6899999983333221111111 1345555554432 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
++..++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 102 ~st~eai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 102 NSTREAVALTEAA-KSGGADACLLVTPYYN--KPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 9999998887753 345642 1222 246788888888777653
No 39
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=65.62 E-value=60 Score=28.94 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=71.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 32 TPf~~dg~iD~~~l~~li~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~v~~~~----grvpViaGvg~~ 101 (315)
T 3si9_A 32 TPFDDNGAIDEKAFCNFVEWQIT-----QGINGVSPVGTTGESPTLTHEE-HKRIIELCVEQVA----KRVPVVAGAGSN 101 (315)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccCccccCHHH-HHHHHHHHHHHhC----CCCcEEEeCCCC
Confidence 45555688999999999999886 6899999883333222211111 1345555554431 469999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
+..++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 102 st~~ai~la~~A-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 102 STSEAVELAKHA-EKAGADAVLVVTPYYN--RPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHcC
Confidence 999998887753 345632 1222 247788888888777653
No 40
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=65.61 E-value=67 Score=28.13 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=70.7
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 144 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 144 ~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+++
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~ 81 (291)
T 3tak_A 12 PMLKDGGVDWKSLEKLVEWHIE-----QGTNSIVAVGTTGEASTLSMEE-HTQVIKEIIRVAN----KRIPIIAGTGANS 81 (291)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCeEEEeCCCCC
Confidence 4555678899999999998886 6899999884333222211111 1345555555432 3699999999999
Q ss_pred HHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 224 YQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 224 ~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
..++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 82 TREAIELTKAA-KDLGADAALLVTPYYN--KPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 99998887743 345632 1222 246788888887777653
No 41
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=64.86 E-value=68 Score=28.97 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|++
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~~ 110 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIK-----AGVDGLFFLGSGGEFSQLGAEE-RKAIARFAIDHVD----RRVPVLIGTGGT 110 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSCEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCSS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCC
Confidence 45555688999999999999886 5899999883333222111111 1345555554432 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+.+++.+..+.. +++|.. -+++. .+.++.++.+-.++.+
T Consensus 111 st~eai~la~~A-~~~Gadavlv~~P~Y~~--~s~~~l~~~f~~VA~a 155 (343)
T 2v9d_A 111 NARETIELSQHA-QQAGADGIVVINPYYWK--VSEANLIRYFEQVADS 155 (343)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCSSSC--CCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCCC--CCHHHHHHHHHHHHHh
Confidence 999998877743 345632 12222 3778888888877764
No 42
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=64.69 E-value=47 Score=27.04 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=83.6
Q ss_pred CCcEEEEecCc------hHHHHHHHHHHhcCCC-CCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE---
Q 024560 112 KGRIWTMVAGG------GASVIYADTVGDLGYA-SELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL--- 179 (266)
Q Consensus 112 ~G~Igii~NGa------Glam~t~D~l~~~g~g-g~pAN~--lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn--- 179 (266)
+-||+|+..=- .+---+.|.|..+ | .+..|. +.+.|.-. +.-+.+.+++ ..+.++|+..
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G~v~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~V 82 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRI--GQVKDDNITVVWVPGAYE---LPLATEALAK----SGKYDAVVALGTV 82 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCCTTSEEEEEESSTTT---HHHHHHHHHH----HCSCSEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCcccceEEEEcCcHHH---HHHHHHHHHh----cCCCCEEEEeeee
Confidence 55788876533 4555678999998 5 555543 45566544 4455555555 5678998887
Q ss_pred ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 024560 180 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 180 i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
|=|+...++-|+ +.+.+.+-+..- ...+||.. -|.-.|.+++.+.- |... ..-=.||+..+
T Consensus 83 IrG~T~Hfd~Va---~~v~~Gl~~v~L---~~~vPV~~GVLT~~~~eQA~~Ra-------g~~~-----~nKG~eaA~aa 144 (156)
T 3nq4_A 83 IRGGTAHFEYVA---GGASNGLASVAQ---DSGVPVAFGVLTTESIEQAIERA-------GTKA-----GNKGAEAALTA 144 (156)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHH---HHCCCEEEEEEEESCHHHHHHHB-------TSTT-----CBHHHHHHHHH
T ss_pred ecCCchHHHHHH---HHHHHHHHHHHh---ccCCCEEEEEeCCCCHHHHHHHh-------CCcc-----cccHHHHHHHH
Confidence 358888888888 777777766542 25799885 67778888875543 3321 23557788888
Q ss_pred HHHhh
Q 024560 259 IDCIM 263 (266)
Q Consensus 259 v~~~~ 263 (266)
+++++
T Consensus 145 lem~~ 149 (156)
T 3nq4_A 145 LEMIN 149 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 43
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=64.48 E-value=69 Score=28.04 Aligned_cols=108 Identities=6% Similarity=0.051 Sum_probs=69.9
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 144 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 144 ~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+++
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~ 81 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVA-----SGTSAIVSVGTTGESATLNHDE-HADVVMMTLDLAD----GRIPVIAGTGANA 81 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-----HTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred cCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCcc
Confidence 4444578899999999999886 4899999883333222211111 1445555554431 3689999999999
Q ss_pred HHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 224 YQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 224 ~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
-.++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 82 TAEAISLTQRF-NDSGIVGCLTVTPYYN--RPSQEGLYQHFKAIAEH 125 (292)
T ss_dssp HHHHHHHHHHT-TTSSCSEEEEECCCSS--CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 99998877753 345632 1222 23778888888777754
No 44
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=64.43 E-value=8.9 Score=32.30 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=40.3
Q ss_pred eeccCCCCHH---HHHHHHHHHHhhhccCCCCCeE--EEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEe
Q 024560 145 AEYSGAPNEE---EVLQYARVVIDCATADPDGRKR--ALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR 219 (266)
Q Consensus 145 lDlgG~a~~~---~~~~al~~ll~~~~~d~~v~~v--lvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl 219 (266)
+-++|..++. .+.++++.+-+ +++++.| .||.|||-... + ..|.++++.. ++||++..
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~~----~~~~k~I~l~InSPGG~v~a---~---~~I~~~i~~~-------~~pV~~~v 92 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLAA----EDASKDISLYINSPGGSISA---G---MAIYDTMVLA-------PCDIATYA 92 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHHH---H---HHHHHHHHHC-------SSCEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHh----CCCCCCEEEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEE
Confidence 4455555544 34444443333 5666655 44569985422 3 7777877765 47888777
Q ss_pred CCCCHHHHHHHHH
Q 024560 220 GGPNYQTGLAKMR 232 (266)
Q Consensus 220 ~G~~~~~~~~~L~ 232 (266)
+|--+-.|-=++.
T Consensus 93 ~g~AaS~g~~Ia~ 105 (208)
T 2cby_A 93 MGMAASMGEFLLA 105 (208)
T ss_dssp EEEEETHHHHHHH
T ss_pred CcEeHHHHHHHHh
Confidence 7655444444443
No 45
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=63.93 E-value=43 Score=27.84 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
.++|++++.-.+... ...+.+..+ |.+.....-+.++.+.+.-+++++-+++ +.|++++||..
T Consensus 139 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~------ 207 (296)
T 3brq_A 139 HQEIAFLTGSMDSPTSIERLAGYKDALAQH--GIALNEKLIANGKWTPASGAEGVEMLLE---RGAKFSALVAS------ 207 (296)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHTT--TCCCCGGGEECCCSSHHHHHHHHHHHHT---C--CCSEEEES------
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCChhHHHHHHHHHHh---CCCCCCEEEEC------
Confidence 367999865433211 235667776 4443222223455566766677666665 25788888742
Q ss_pred chhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 186 NFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-..+... + +.+. -++.+. ..++.+..+.++++.
T Consensus 208 -~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 266 (296)
T 3brq_A 208 -NDDMA---IGAMKALHERG-----VAVPEQVSVIGFDDIAI--A-PYTV-----PALSSV----KIPVTEMIQEIIGRL 266 (296)
T ss_dssp -SHHHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCTT--G-GGSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred -ChHHH---HHHHHHHHHcC-----CCCCCceEEEeecCchh--h-hccC-----CCceee----eCCHHHHHHHHHHHH
Confidence 56778 89999999874 2333 3345555432 1 1122 134321 336777777666654
No 46
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=63.76 E-value=42 Score=27.20 Aligned_cols=125 Identities=13% Similarity=0.029 Sum_probs=81.7
Q ss_pred CCcEEEEecCc------hHHHHHHHHHHhcCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE---e
Q 024560 112 KGRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL---I 180 (266)
Q Consensus 112 ~G~Igii~NGa------Glam~t~D~l~~~g~gg~pAN~--lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn---i 180 (266)
+-||||+..-- .+---+.|.|..+ |.+..|. +.+.|.- .+.-+.+.+.+ ..+.++|+.. |
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGaf---EiP~aa~~la~----~~~yDavIalG~VI 82 (154)
T 1hqk_A 12 GLRFGIVASRFNHALVDRLVEGAIDCIVRH--GGREEDITLVRVPGSW---EIPVAAGELAR----KEDIDAVIAIGVLI 82 (154)
T ss_dssp TCCEEEEEECTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGG---GHHHHHHHHHT----CTTCCEEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHH---HHHHHHHHHHh----cCCCCEEEEeeeee
Confidence 45788886542 4555578999998 5655543 3455533 25555566665 6779999887 3
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHH
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 259 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av 259 (266)
=|+...++-|+ +.+.+.+-+.+- ...+||.- -|.-.|.+++.+. +|... ..-=.||+..++
T Consensus 83 rG~T~Hfd~Va---~~vs~gl~~v~l---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nkG~eaA~aal 144 (154)
T 1hqk_A 83 RGATPHFDYIA---SEVSKGLANLSL---ELRKPITFGVITADTLEQAIER-------AGTKH-----GNKGWEAALSAI 144 (154)
T ss_dssp CCSSTHHHHHH---HHHHHHHHHHHH---HHTSCEEEEEEEESSHHHHHHH-------EEETT-----EEHHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHH-------hcccc-----cchHHHHHHHHH
Confidence 58888899888 777777766542 24799884 6666788888543 23321 124567888888
Q ss_pred HHhh
Q 024560 260 DCIM 263 (266)
Q Consensus 260 ~~~~ 263 (266)
+++.
T Consensus 145 em~~ 148 (154)
T 1hqk_A 145 EMAN 148 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 47
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=62.68 E-value=87 Score=28.10 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=71.6
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~~ve~~~----grvpViaGvg~ 112 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDA-----AEVDSVGILGSTGIYMYLTREE-RRRAIEAAATILR----GRRTLMAGIGA 112 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHH-----HTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEECC
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCC
Confidence 355655688999999999999886 5899999883333222211111 1445555554431 36999999999
Q ss_pred CCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++..++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 113 ~st~eai~la~~A-~~~Gadavlv~~P~Y~--~~s~~~l~~~f~~VA~a 158 (332)
T 2r8w_A 113 LRTDEAVALAKDA-EAAGADALLLAPVSYT--PLTQEEAYHHFAAVAGA 158 (332)
T ss_dssp SSHHHHHHHHHHH-HHHTCSEEEECCCCSS--CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 9999998877743 345632 1222 23778888888777764
No 48
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=62.51 E-value=49 Score=29.34 Aligned_cols=111 Identities=7% Similarity=-0.006 Sum_probs=71.2
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. ..++||++-.|++
T Consensus 24 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~----~gr~pviaGvg~~ 93 (307)
T 3s5o_A 24 TPFTATAEVDYGKLEENLHKLGT-----FPFRGFVVQGSNGEFPFLTSSE-RLEVVSRVRQAM----PKNRLLLAGSGCE 93 (307)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHTT-----SCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHTS----CTTSEEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHc----CCCCcEEEecCCC
Confidence 55666688899999999888875 6899999983333221111111 134556555543 2468999999999
Q ss_pred CHHHHHHHHHhhhhhcCCce------eecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIPL------EVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip~------~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+..++.+..+.. +++|... ++|.+-.+.++.++.+-.++.+
T Consensus 94 ~t~~ai~la~~A-~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a 140 (307)
T 3s5o_A 94 STQATVEMTVSM-AQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL 140 (307)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh
Confidence 999998877643 3456431 1111013778888888887764
No 49
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=62.14 E-value=81 Score=28.34 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=66.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH-----------HHHHhhhccCCCCCeEEEEecc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA-----------RVVIDCATADPDGRKRALLIGG 182 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al-----------~~ll~~~~~d~~v~~vlvni~g 182 (266)
+||+|+.|...+...+..+.... +-+..-. -+.++++..+.. +-+++ ++++++|+|-.|.
T Consensus 4 rigiiG~G~~~~~~~~~~l~~~~-~~~l~av----~d~~~~~~~~~a~~~g~~~~~~~~ell~----~~~vD~V~i~tp~ 74 (387)
T 3moi_A 4 RFGICGLGFAGSVLMAPAMRHHP-DAQIVAA----CDPNEDVRERFGKEYGIPVFATLAEMMQ----HVQMDAVYIASPH 74 (387)
T ss_dssp EEEEECCSHHHHTTHHHHHHHCT-TEEEEEE----ECSCHHHHHHHHHHHTCCEESSHHHHHH----HSCCSEEEECSCG
T ss_pred EEEEEeCCHHHHHHHHHHHHhCC-CeEEEEE----EeCCHHHHHHHHHHcCCCeECCHHHHHc----CCCCCEEEEcCCc
Confidence 68999888444555566776652 2121111 234444433322 23444 7899998876553
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
. .-+ +-+..+++ ..++|++ .=-..+.++++++++. +++.|+.+.+. ...-...+++.+.++
T Consensus 75 ~-----~H~---~~~~~al~--------aGk~Vl~EKP~a~~~~e~~~l~~~-a~~~g~~~~v~-~~~R~~p~~~~~k~~ 136 (387)
T 3moi_A 75 Q-----FHC---EHVVQASE--------QGLHIIVEKPLTLSRDEADRMIEA-VERAGVHLVVG-TSRSHDPVVRTLRAI 136 (387)
T ss_dssp G-----GHH---HHHHHHHH--------TTCEEEECSCCCSCHHHHHHHHHH-HHHHTCCEEEC-CCGGGSHHHHHHHHH
T ss_pred H-----HHH---HHHHHHHH--------CCCceeeeCCccCCHHHHHHHHHH-HHHhCCeEEEE-eccccCHHHHHHHHH
Confidence 2 111 43344443 2477887 5556688999888774 45668765321 122333455555555
Q ss_pred h
Q 024560 262 I 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 137 i 137 (387)
T 3moi_A 137 V 137 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=62.09 E-value=78 Score=29.04 Aligned_cols=108 Identities=8% Similarity=0.021 Sum_probs=71.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+.. ..++||++-.|+
T Consensus 68 vTPF~~dg~ID~~al~~lv~~li~-----~Gv~Gl~v~GTTGE~~~Ls~eE-r~~vi~~~ve~~----~grvpViaGvg~ 137 (360)
T 4dpp_A 68 KTPYLPDGRFDLEAYDDLVNIQIQ-----NGAEGVIVGGTTGEGQLMSWDE-HIMLIGHTVNCF----GGSIKVIGNTGS 137 (360)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHH----TTTSEEEEECCC
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEecccccChhhCCHHH-HHHHHHHHHHHh----CCCCeEEEecCC
Confidence 466666788999999999999886 6899999984333222211111 134555544433 246899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHhh
Q 024560 222 PNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gi-------p~~~~~~~~~~~eAv~~av~~~~ 263 (266)
++.+++.+..+.. +++|. |.+ + -.+.++.++.+-.++.
T Consensus 138 ~st~eai~la~~A-~~~Gadavlvv~PyY-~--k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 138 NSTREAIHATEQG-FAVGMHAALHINPYY-G--KTSIEGLIAHFQSVLH 182 (360)
T ss_dssp SSHHHHHHHHHHH-HHTTCSEEEEECCCS-S--CCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHH-HHcCCCEEEEcCCCC-C--CCCHHHHHHHHHHHHH
Confidence 9999998877743 34564 322 2 2477888888777665
No 51
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=61.81 E-value=11 Score=31.25 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEE--EEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 024560 153 EEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 230 (266)
Q Consensus 153 ~~~~~~al~~ll~~~~~d~~v~~vl--vni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~ 230 (266)
.+.+.++++.+-+ +++.+.|+ ||.|||-... + ..|.++++.+ +.||++..+|--+-.|-=+
T Consensus 40 a~~i~~~L~~l~~----~~~~~~I~l~InSPGG~v~a---~---~~I~~~i~~~-------~~pV~~~v~g~AaS~g~~I 102 (193)
T 1yg6_A 40 ANLIVAQMLFLEA----ENPEKDIYLYINSPGGVITA---G---MSIYDTMQFI-------KPDVSTICMGQAASMGAFL 102 (193)
T ss_dssp HHHHHHHHHHHHH----HCSSSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHh----cCCCCCEEEEEECcCCCHHH---H---HHHHHHHHhc-------CCCEEEEEeeeHHHHHHHH
Confidence 4455555554443 45556544 4579986422 2 6777877765 4688887776544444333
Q ss_pred H
Q 024560 231 M 231 (266)
Q Consensus 231 L 231 (266)
+
T Consensus 103 a 103 (193)
T 1yg6_A 103 L 103 (193)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=61.71 E-value=49 Score=27.79 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCcEEEEecCc-hHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 112 KGRIWTMVAGG-GASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 112 ~G~Igii~NGa-Glam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
.++|++++.-. +... -..+.+..+ |-+.....-+-++.+.+.-+++++-+|+ +.|++++||.
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------ 201 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKLQGYKRALEEA--NLPFNEQFVAEGDYTYDSGLEALQHLMS---LDKKPTAILS------ 201 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHHHHHHHHHHHT--TCCCCGGGEEECCSCHHHHHHHHHHHTT---SSSCCSEEEE------
T ss_pred CCeEEEEeCCccccccHHHHHHHHHHHHHHc--CCCCChheEeeCCCCHHHHHHHHHHHHc---CCCCCCEEEE------
Confidence 36799997543 3221 245677776 4443221122355567766777766665 2577888874
Q ss_pred cchhHhhhhHHHHHHHHHHhh
Q 024560 185 ANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| .|+++++++.+
T Consensus 202 -~~d~~A---~g~~~al~~~G 218 (289)
T 2fep_A 202 -ATDEMA---LGIIHAAQDQG 218 (289)
T ss_dssp -SSHHHH---HHHHHHHHHTT
T ss_pred -CCHHHH---HHHHHHHHHcC
Confidence 267778 99999999874
No 53
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=60.93 E-value=66 Score=26.14 Aligned_cols=125 Identities=16% Similarity=0.057 Sum_probs=79.9
Q ss_pred CcEEEEecCc------hHHHHHHHHHHhcCCCCCCCce--eeccCCCCHHHHHHHHHHHHhh-hccCCCCCeEEEE---e
Q 024560 113 GRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDC-ATADPDGRKRALL---I 180 (266)
Q Consensus 113 G~Igii~NGa------Glam~t~D~l~~~g~gg~pAN~--lDlgG~a~~~~~~~al~~ll~~-~~~d~~v~~vlvn---i 180 (266)
-||+|+..-- .+---+.|.|..+ | .|. +.+.|.- .+.-+.+.+.+. -....+.++|+.. |
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~--G---~~i~v~~VPGaf---EiP~aa~~la~~~~~~~~~yDavIaLG~VI 84 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEA--G---ATYDVVTVPGAL---EIPATISFALDGADNGGTEYDGFVALGTVI 84 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHT--T---CEEEEEEESSGG---GHHHHHHHHHHHHHTTCCCCSEEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHc--C---CCeEEEECCcHH---HHHHHHHHHHhhccccCCCCCEEEEeeeee
Confidence 3677776542 4555578999998 4 343 2344433 345555555540 0001678998887 4
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHH
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 259 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av 259 (266)
=|+...++-|+ +.+.+.+-+..- ...+||.. -|.-.|.+++.+.-. ... ..-=.||+..++
T Consensus 85 rG~T~Hfd~Va---~~v~~gl~~vsl---~~~vPV~~GVLT~~~~eQA~~Rag-------~~~-----~nkG~eaA~aAl 146 (157)
T 2i0f_A 85 RGETYHFDIVS---NESCRALTDLSV---EESIAIGNGILTVENEEQAWVHAR-------RED-----KDKGGFAARAAL 146 (157)
T ss_dssp CCSSSTTHHHH---HHHHHHHHHHHH---HTTCCEEEEEEEESSHHHHHHHHC-------TTT-----TCHHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHHhC-------ccc-----cccHHHHHHHHH
Confidence 59999999999 888888776642 25799885 777778888866543 111 224577888888
Q ss_pred HHhh
Q 024560 260 DCIM 263 (266)
Q Consensus 260 ~~~~ 263 (266)
++++
T Consensus 147 em~~ 150 (157)
T 2i0f_A 147 TMIG 150 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 54
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=60.53 E-value=48 Score=28.08 Aligned_cols=118 Identities=8% Similarity=-0.017 Sum_probs=67.8
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHH-----HhhhccCCCCCeEEEEec
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV-----IDCATADPDGRKRALLIG 181 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~l-----l~~~~~d~~v~~vlvni~ 181 (266)
.+|++++.-.+.. -...+.+..+ |..+....-..++.+.+.-+++++-+ |+ +.|.+++||.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~---~~~~~~ai~~--- 203 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLASA--GLRSEAAWVVDAGWEADAGSAALNTLYRGANLG---KPDGPTAVVV--- 203 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTT---STTSCSEEEE---
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHHHc--CCCCCcceEEecCCChHHHHHHHHHhcchhhhc---CCCCCcEEEE---
Confidence 5788887544321 1234566666 44433222334566777777777766 54 3678888874
Q ss_pred ccccchhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 024560 182 GGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 182 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
.++.+| -|+++++++.+ .++| -|+-..+. ..+. .+. -.+.+. ..++++..+.+
T Consensus 204 ----~nd~~A---~g~~~al~~~G-----~~vP~di~vig~D~~--~~~~-~~~-----p~lttv----~~~~~~~g~~a 259 (303)
T 3kke_A 204 ----ASVNAA---VGALSTALRLG-----LRVPEDLSIVGINTT--WVSD-TVY-----PALTTV----RLPLQRLGEVA 259 (303)
T ss_dssp ----SSHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCC--HHHH-HSS-----SCCEEE----ECCHHHHHHHH
T ss_pred ----CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEEcCh--hHhh-cCC-----CCeeEE----ecCHHHHHHHH
Confidence 367888 99999999875 3333 23445553 2221 111 123321 34777777777
Q ss_pred HHHh
Q 024560 259 IDCI 262 (266)
Q Consensus 259 v~~~ 262 (266)
+++.
T Consensus 260 v~~L 263 (303)
T 3kke_A 260 ADVL 263 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 55
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=59.91 E-value=52 Score=28.48 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=48.2
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
++|++++...+... ...+.+..+ |. +-...-+-++.+.+.-+++++-+|+ ++|++++|+. .
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~L~---~~~~~~aI~~-------~ 212 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEH--PQ-VHLRQLVYGEWNRERAYRQAQQLLK---RYPKTQLVWS-------A 212 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHC--TT-EEEEEEEECTTCHHHHHHHHHHHHH---HCTTEEEEEE-------S
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHC--CC-eEEEEEeeCCCcHHHHHHHHHHHHH---hCCCcCEEEE-------C
Confidence 57898865443221 245666666 33 2111223456677777777766665 2788877763 3
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| .|+++++++.+
T Consensus 213 ~d~~a---~g~~~al~~~G 228 (350)
T 3h75_A 213 NDEMA---LGAMQAARELG 228 (350)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 67788 99999999875
No 56
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=59.88 E-value=49 Score=27.73 Aligned_cols=78 Identities=6% Similarity=-0.089 Sum_probs=48.2
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pA-N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
..+|++++...+... -..+.+..+ |-+.. .++ +.++.+.+.-+++++-+++ +.|++++||.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------ 195 (290)
T 2rgy_A 128 HRKLAVISGPFTASDNVERLDGFFDELARH--GIARDSVPL-IESDFSPEGGYAATCQLLE---SKAPFTGLFC------ 195 (290)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHHHHHHHTT--TCCGGGSCE-EECCSSHHHHHHHHHHHHH---HTCCCSEEEE------
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCCCcccE-EecCCChhHHHHHHHHHHh---CCCCCcEEEE------
Confidence 367999975433211 234566666 33322 222 2355566666677666665 2578888884
Q ss_pred cchhHhhhhHHHHHHHHHHhh
Q 024560 185 ANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| .|+++++++.+
T Consensus 196 -~~d~~A---~g~~~al~~~G 212 (290)
T 2rgy_A 196 -ANDTMA---VSALARFQQLG 212 (290)
T ss_dssp -SSHHHH---HHHHHHHHHTT
T ss_pred -CCcHHH---HHHHHHHHHcC
Confidence 367788 99999999875
No 57
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=59.73 E-value=58 Score=27.97 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=49.6
Q ss_pred CcEEEEecCc-hHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 113 GRIWTMVAGG-GAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 113 G~Igii~NGa-Gla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
.+|++++.-. +.. --..+.+..+ |.+.....-+-++.+.+.-+++++-+|+ ..|.+++||.
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 245 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTES--GLPVRDSYIVEGDYTYDSGIEAVEKLLE---EDEKPTAIFV------- 245 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTT--TCCCCGGGEEECCSSHHHHHHHHHHHHH---SSSCCSEEEE-------
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHc---CCCCCeEEEE-------
Confidence 5799997543 322 1245777777 4443221223355666777777777665 2567888884
Q ss_pred chhHhhhhHHHHHHHHHHhh
Q 024560 186 NFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| -|+++++++.+
T Consensus 246 ~nd~~A---~g~~~al~~~G 262 (332)
T 2hsg_A 246 GTDEMA---LGVIHGAQDRG 262 (332)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CChHHH---HHHHHHHHHcC
Confidence 267788 99999999874
No 58
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=59.52 E-value=19 Score=30.50 Aligned_cols=40 Identities=18% Similarity=0.019 Sum_probs=24.3
Q ss_pred eEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 024560 175 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 227 (266)
Q Consensus 175 ~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~ 227 (266)
.+.||.|||-... + .+|.++++.. +.||++...|.-+-.|
T Consensus 72 ~l~INSPGGsv~a---~---~~I~~~i~~~-------~~pV~t~v~g~AAS~g 111 (215)
T 2f6i_A 72 KIYINSPGGSINE---G---LAILDIFNYI-------KSDIQTISFGLVASMA 111 (215)
T ss_dssp EEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEECHHH
T ss_pred EEEEECCCCCHHH---H---HHHHHHHHhc-------CCCEEEEEeeEhHhHH
Confidence 3445679986522 2 7788888775 4577776666433333
No 59
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=59.26 E-value=94 Score=27.37 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=70.1
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~v~~~~~~~~~----grvpViaGvg~~ 91 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLID-----NGTTAIVVGGTTGESPTLTSEE-KVALYRHVVSVVD----KRVPVIAGTGSN 91 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCS
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCceEEeCCCCC
Confidence 34444578899999999999886 5899999883323222211111 1345555554431 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-.++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 92 ~t~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 136 (301)
T 1xky_A 92 NTHASIDLTKKA-TEVGVDAVMLVAPYYN--KPSQEGMYQHFKAIAES 136 (301)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHh
Confidence 999998877743 345632 1222 23778888888777764
No 60
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=59.13 E-value=51 Score=28.49 Aligned_cols=78 Identities=9% Similarity=-0.048 Sum_probs=47.9
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+.. --..+.+..+ |-......-+-++.+.+.-+++++-+|+ ..+.+++||. .
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 245 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFC-------G 245 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------S
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHC--CCCCChhheEeCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 6788886433221 1245666666 3332211123345567777777776665 2577888884 2
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| -|+++++++.+
T Consensus 246 nd~~A---~g~~~al~~~G 261 (340)
T 1qpz_A 246 GDIMA---MGALCAADEMG 261 (340)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred CHHHH---HHHHHHHHHcC
Confidence 67788 99999999874
No 61
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=58.81 E-value=90 Score=27.66 Aligned_cols=109 Identities=12% Similarity=0.013 Sum_probs=70.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+.. .++||++-.|++
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Lt~~E-r~~v~~~~v~~~-----grvpViaGvg~~ 86 (313)
T 3dz1_A 18 TPFHDDGKIDDVSIDRLTDFYAE-----VGCEGVTVLGILGEAPKLDAAE-AEAVATRFIKRA-----KSMQVIVGVSAP 86 (313)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSEEEESTGGGTGGGSCHHH-HHHHHHHHHHHC-----TTSEEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----CCCCEEEeCccCcChhhCCHHH-HHHHHHHHHHHc-----CCCcEEEecCCC
Confidence 45555688899999999999986 6899999883333221111111 134555544442 269999999999
Q ss_pred CHHHHHHHHHhhhhhcCCcee----ecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIPLE----VYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip~~----~~~~~~~~~eAv~~av~~~~~ 264 (266)
+..++.+..+.. +++|.... -| ...+.++.++.+-.++.+
T Consensus 87 ~t~~ai~la~~A-~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 87 GFAAMRRLARLS-MDAGAAGVMIAPPP-SLRTDEQITTYFRQATEA 130 (313)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHh
Confidence 999998877643 34564210 11 134788888888887765
No 62
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=58.79 E-value=34 Score=34.76 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|.-++ ..++... |- .-+|+|.+.+++.+.+++ . ..++++|.+-.. .+...+.. ..+++.++
T Consensus 620 G~~iV-a~~l~~~--Gf---eVi~lG~~v~~eeiv~aA---~-----e~~adiVglSsl--~~~~~~~~---~~vi~~Lr 680 (762)
T 2xij_A 620 GAKVI-ATGFADL--GF---DVDIGPLFQTPREVAQQA---V-----DADVHAVGVSTL--AAGHKTLV---PELIKELN 680 (762)
T ss_dssp HHHHH-HHHHHHT--TC---EEEECCTTCCHHHHHHHH---H-----HTTCSEEEEEEC--SSCHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHhC--Ce---EEeeCCCCCCHHHHHHHH---H-----HcCCCEEEEeee--cHHHHHHH---HHHHHHHH
Confidence 44443 3455554 33 346788889999877662 3 345666666532 22333334 78888888
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 203 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+... .++ .+..||.....-.+.+. +.|+.-+ |++-++..++++.+++...
T Consensus 681 ~~G~----~dv--~VivGG~~P~~d~~~l~----~~GaD~~-f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 681 SLGR----PDI--LVMCGGVIPPQDYEFLF----EVGVSNV-FGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HTTC----TTS--EEEEEESCCGGGHHHHH----HHTCCEE-ECTTCCHHHHHHHHHHHHH
T ss_pred hcCC----CCC--EEEEeCCCCcccHHHHH----hCCCCEE-eCCCCCHHHHHHHHHHHHH
Confidence 8641 234 44556622121223355 5688753 4456799999999888763
No 63
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=58.76 E-value=53 Score=27.34 Aligned_cols=120 Identities=8% Similarity=0.051 Sum_probs=66.8
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++...+... ...+.+..+ |..+....-+.++.+.+..+++++-+|+ +.|.+++|+..
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~------- 195 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKN--GIKISENHIIAAENSIHGGVDAAKKLMK---LKNTPKALFCN------- 195 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHT--TCBCCGGGEEECCSSHHHHHHHHHHHTT---SSSCCSEEEES-------
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhheeccCCCHHHHHHHHHHHHc---CCCCCcEEEEc-------
Confidence 46777764433211 234556665 3332221223556677777777776665 36788888743
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-.+.++...+. .+. -.+.+. ..++.+..+.++++.
T Consensus 196 ~d~~a---~g~~~al~~~g-----~~vP~di~vig~d~~~~~~~~-~~~-----p~lttv----~~~~~~~g~~a~~~l 256 (289)
T 3g85_A 196 SDSIA---LGVISVLNKRQ-----ISIPDDIEIVAIGMNDREYTE-FST-----PPVTIV----DIPIEEMAGTCISLV 256 (289)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECSCHHHHH-SSS-----SCCEEE----ECCHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHcC-----CCCCCceEEEEeCCCCcchhh-ccC-----CCCeEE----cCCHHHHHHHHHHHH
Confidence 67788 99999999875 3333 23445533333321 111 133332 347788777777764
No 64
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=58.49 E-value=68 Score=26.49 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=69.1
Q ss_pred CCcEEEEecCchH----HHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccch
Q 024560 112 KGRIWTMVAGGGA----SVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 187 (266)
Q Consensus 112 ~G~Igii~NGaGl----am~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~ 187 (266)
..+|++++...+. --...+.+..+ |..+-..+ +.++.+.+.-+++++-+|+ ++|++++|+.. +
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~-------~ 184 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAH--GLEPLSND-YLGPAVEHAGYTETLALLK---EHPEVTAIFSS-------N 184 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHT--TCCCEECC-CCSCCCHHHHHHHHHHHHH---HCTTCCEEEES-------S
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHc--CcCCCccc-ccCCCCHHHHHHHHHHHHh---CCCCCCEEEEC-------C
Confidence 3679998766543 11234566666 34332222 5667777777777776665 26888888743 5
Q ss_pred hHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 188 TDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 188 ~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
+.+| .|+++++++.+ .++| -|+-..+.. .+ +.+. -++.+. ..++.+..+.++++.
T Consensus 185 d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~--~~-~~~~-----p~lttv----~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 185 DITA---IGALGAARELG-----LRVPEDLSIIGYDNTP--LA-QTRL-----INLTTI----DDNSIGVGYNAALLL 242 (280)
T ss_dssp HHHH---HHHHHHHHHHT-----CCTTTTCEEEEESCCH--HH-HSTT-----TCCCEE----ECCHHHHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHcC-----CCCCCeeEEEEECCch--Hh-hccC-----CCceEE----ecCHHHHHHHHHHHH
Confidence 7778 99999999885 2333 344555543 11 1111 134332 347777777776654
No 65
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=58.47 E-value=48 Score=24.88 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhhccCC-CCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHH
Q 024560 152 NEEEVLQYARVVIDCATADP-DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAK 230 (266)
Q Consensus 152 ~~~~~~~al~~ll~~~~~d~-~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~ 230 (266)
+.+.+.+.+.-++. ..| ..+.++++ +++++..|..+ ...+++..++... .... +++.|.+ ..-+++
T Consensus 29 ~a~~~~~~l~~~~~---~~~~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~--l~l~~~~-~~v~~~ 95 (130)
T 2kln_A 29 NAEDFRRRALTVVD---QDPGQVEWFVLN-AESNVEVDLTA--LDALDQLRTELLR----RGIV--FAMARVK-QDLRES 95 (130)
T ss_dssp THHHHHHHHHHHTT---SSSSCCEEEEEE-CSCCSSSBCST--TTHHHHHHHHHHT----TTEE--EEEECCS-SHHHHH
T ss_pred hHHHHHHHHHHHHh---cCCCCceEEEEE-CCCCChhhHHH--HHHHHHHHHHHHH----CCCE--EEEEcCC-HHHHHH
Confidence 45667777655543 122 56666666 56666666655 3666666666542 3333 3444444 356777
Q ss_pred HHhhhhhcCCce-----eecCCCCCHHHHHHHH
Q 024560 231 MRALGEELGIPL-----EVYGPEATMTGICKQA 258 (266)
Q Consensus 231 L~~~~~~~Gip~-----~~~~~~~~~~eAv~~a 258 (266)
|. .+|+.- .+ |.|.++|+..+
T Consensus 96 l~----~~gl~~~~~~~~i---~~t~~~Al~~~ 121 (130)
T 2kln_A 96 LR----AASLLDKIGEDHI---FMTLPTAVQAF 121 (130)
T ss_dssp HH----HCTTHHHHCTTEE---ESCHHHHHHHH
T ss_pred HH----HcCChhhcCccee---ECCHHHHHHHH
Confidence 77 457631 33 45999998765
No 66
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=58.24 E-value=96 Score=27.16 Aligned_cols=110 Identities=9% Similarity=0.017 Sum_probs=70.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. ..++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~----~gr~pviaGvg~~ 82 (294)
T 3b4u_A 13 TPFKTDGTVDIDAMIAHARRCLS-----NGCDSVTLFGTTGEGCSVGSRE-RQAILSSFIAAG----IAPSRIVTGVLVD 82 (294)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCSEEEESSTTTTGGGSCHHH-HHHHHHHHHHTT----CCGGGEEEEECCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh----CCCCcEEEeCCCc
Confidence 34444588899999999999886 5899999883333222111111 145566555543 2468999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-+++.+..+.. +++|.. -+++. ..+.++.++.+-.++.+
T Consensus 83 ~t~~ai~la~~A-~~~Gadavlv~~P~y~~-~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 83 SIEDAADQSAEA-LNAGARNILLAPPSYFK-NVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCCCSSC-SCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HhcCCCEEEEcCCcCCC-CCCHHHHHHHHHHHHHh
Confidence 999998877743 345632 12221 13778888888877764
No 67
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=57.72 E-value=53 Score=27.25 Aligned_cols=78 Identities=9% Similarity=-0.068 Sum_probs=45.9
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+.. -...+.+..+ |.++....-.-++.+.+..+++++-+|+ ..|++++|+..
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~------- 194 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEA--MIKVPESWIVQGDFEPESGYRAMQQILS---QPHRPTAVFCG------- 194 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHT--TCCCCGGGBCCCCSSHHHHHHHHHHHHT---SSSCCSEEEES-------
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHC--CCCCChHHeEeCCCCHHHHHHHHHHHHh---CCCCCCEEEEC-------
Confidence 5788885432211 1245667776 4433211122344566666666666665 25788888742
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| .|+++++++.+
T Consensus 195 ~d~~a---~g~~~al~~~G 210 (289)
T 1dbq_A 195 GDIMA---MGALCAADEMG 210 (289)
T ss_dssp CHHHH---HHHHHHHHHTT
T ss_pred CcHHH---HHHHHHHHHcC
Confidence 56778 89999999874
No 68
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=57.69 E-value=63 Score=27.01 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCC-CCCeEEEEeccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADP-DGRKRALLIGGG 183 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pA-N~lDlgG~a~~~~~~~al~~ll~~~~~d~-~v~~vlvni~gg 183 (266)
.++|++++.-.+... ...+.+..+ |-+.. .++ +-++.+.+.-+++++-+|+. +.| ++++||..
T Consensus 125 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--~~~~~~~ai~~~---- 195 (287)
T 3bbl_A 125 HRRIAILAWPEDSRVGNDRLQGYLEAMQTA--QLPIETGYI-LRGEGTFEVGRAMTLHLLDL--SPERRPTAIMTL---- 195 (287)
T ss_dssp CCCEEEEECCTTCHHHHHHHHHHHHHHHHT--TCCCCGGGE-EECCSSHHHHHHHHHHHHTS--CTTTSCSEEEES----
T ss_pred CCeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhE-EeCCCCHHHHHHHHHHHHhh--CCCCCCcEEEEC----
Confidence 367999865433211 235666666 44432 222 23455666666666655530 256 78888742
Q ss_pred ccchhHhhhhHHHHHHHHHHhh
Q 024560 184 IANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 184 i~~~~~vA~~~~gii~al~~~~ 205 (266)
++.+| .|+++++++.+
T Consensus 196 ---~d~~a---~g~~~al~~~G 211 (287)
T 3bbl_A 196 ---NDTMA---IGAMAAARERG 211 (287)
T ss_dssp ---SHHHH---HHHHHHHHHTT
T ss_pred ---CcHHH---HHHHHHHHHcC
Confidence 67788 99999999874
No 69
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=57.60 E-value=89 Score=27.51 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH------------HHHHhhhccCCCCCeEEEEec
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA------------RVVIDCATADPDGRKRALLIG 181 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al------------~~ll~~~~~d~~v~~vlvni~ 181 (266)
|||+|+.|...+-..+..+...+-+.+..-. -+.++++..+.. +-+++ ++++++|+|-.|
T Consensus 20 rvgiIG~G~~~g~~~~~~l~~~~~~~~lvav----~d~~~~~~~~~a~~~~~~~~~~~~~~ll~----~~~vD~V~i~tp 91 (340)
T 1zh8_A 20 RLGIVGCGIAARELHLPALKNLSHLFEITAV----TSRTRSHAEEFAKMVGNPAVFDSYEELLE----SGLVDAVDLTLP 91 (340)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEE----ECSSHHHHHHHHHHHSSCEEESCHHHHHH----SSCCSEEEECCC
T ss_pred eEEEEecCHHHHHHHHHHHHhCCCceEEEEE----EcCCHHHHHHHHHHhCCCcccCCHHHHhc----CCCCCEEEEeCC
Confidence 6888888744555556677654101122111 223444433322 22344 889999988755
Q ss_pred ccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 182 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 182 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
.. .-+ +-+.++++ ..++|++ .=-..+.++++++.+. +++.|+.+.+. ...-...+++++.+
T Consensus 92 ~~-----~H~---~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~g~~~~v~-~~~R~~p~~~~~k~ 153 (340)
T 1zh8_A 92 VE-----LNL---PFIEKALR--------KGVHVICEKPISTDVETGKKVVEL-SEKSEKTVYIA-ENFRHVPAFWKAKE 153 (340)
T ss_dssp GG-----GHH---HHHHHHHH--------TTCEEEEESSSSSSHHHHHHHHHH-HHHCSSCEEEE-CGGGGCHHHHHHHH
T ss_pred ch-----HHH---HHHHHHHH--------CCCcEEEeCCCCCCHHHHHHHHHH-HHHcCCeEEEE-ecccCCHHHHHHHH
Confidence 32 112 44444544 2467887 5556688999888774 45668765321 11122334555544
Q ss_pred Hh
Q 024560 261 CI 262 (266)
Q Consensus 261 ~~ 262 (266)
+.
T Consensus 154 ~i 155 (340)
T 1zh8_A 154 LV 155 (340)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 70
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.48 E-value=40 Score=28.34 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|.-|+ ..++...| -.-+|+|-+.+++.+.++.+ ..+.+.|.+-..+-.+..... ++.+++.++
T Consensus 108 G~~iv-~~~l~~~G-----~~Vi~LG~~vp~e~iv~~~~--------~~~~d~v~l~~S~l~~~~~~~---~~~~i~~l~ 170 (215)
T 3ezx_A 108 GHRLV-TTMLGANG-----FQIVDLGVDVLNENVVEEAA--------KHKGEKVLLVGSALMTTSMLG---QKDLMDRLN 170 (215)
T ss_dssp HHHHH-HHHHHHTS-----CEEEECCSSCCHHHHHHHHH--------HTTTSCEEEEEECSSHHHHTH---HHHHHHHHH
T ss_pred HHHHH-HHHHHHCC-----CeEEEcCCCCCHHHHHHHHH--------HcCCCEEEEEchhcccCcHHH---HHHHHHHHH
Confidence 55554 35666653 35678999999998877732 234555666111222222222 366777777
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 203 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
+... ..++|| ++||.-..+ +.-+ +.|-..+ ..+..+||+.+-++
T Consensus 171 ~~~~---~~~v~v--~vGG~~~~~--~~a~----~iGad~~----~~dA~~av~~a~~l 214 (215)
T 3ezx_A 171 EEKL---RDSVKC--MFGGAPVSD--KWIE----EIGADAT----AENAAEAAKVALEV 214 (215)
T ss_dssp HTTC---GGGSEE--EEESSSCCH--HHHH----HHTCCBC----CSSHHHHHHHHHHT
T ss_pred HcCC---CCCCEE--EEECCCCCH--HHHH----HhCCeEE----ECCHHHHHHHHHHh
Confidence 7531 014554 556653332 2222 3465443 56888888877654
No 71
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=57.17 E-value=81 Score=28.00 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=71.4
Q ss_pred CceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 142 GNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 142 AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
--|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+.. ..++||++-.|+
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~~E-r~~v~~~~~~~~----~grvpViaGvg~ 85 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-----HHTDGILLAGTTAESPTLTHDE-ELELFAAVQKVV----NGRVPLIAGVGT 85 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-----TTCCCEEESSTTTTGGGSCHHH-HHHHHHHHHHHS----CSSSCEEEECCC
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh----CCCCcEEEeCCC
Confidence 345555678888899999988886 6899999984333222211111 144566555543 246899999999
Q ss_pred CCHHHHHHHHHhhhhhcCC--------ceeecCCCCCHHHHHHHHHHHhhh
Q 024560 222 PNYQTGLAKMRALGEELGI--------PLEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gi--------p~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
++..++.+..+.. +++|- |.+ + -.+.++.++.+-.++.+
T Consensus 86 ~~t~~ai~la~~A-~~~Ga~davlv~~P~y-~--~~s~~~l~~~f~~va~a 132 (311)
T 3h5d_A 86 NDTRDSIEFVKEV-AEFGGFAAGLAIVPYY-N--KPSQEGMYQHFKAIADA 132 (311)
T ss_dssp SSHHHHHHHHHHH-HHSCCCSEEEEECCCS-S--CCCHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHH-HhcCCCcEEEEcCCCC-C--CCCHHHHHHHHHHHHHh
Confidence 9999998887754 23442 322 2 24778888888777764
No 72
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=56.71 E-value=1e+02 Score=26.91 Aligned_cols=57 Identities=19% Similarity=0.047 Sum_probs=36.3
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
++++++|+|-.|.. .-+ +-+.++++. .++|++ .=-..+.++++++.+. +++.|+.+.
T Consensus 64 ~~~~D~V~i~tp~~-----~h~---~~~~~al~a--------GkhVl~EKP~a~~~~e~~~l~~~-a~~~g~~~~ 121 (336)
T 2p2s_A 64 DASIDLIACAVIPC-----DRA---ELALRTLDA--------GKDFFTAKPPLTTLEQLDAVQRR-VAETGRKFA 121 (336)
T ss_dssp CTTCCEEEECSCGG-----GHH---HHHHHHHHT--------TCEEEECSSCCSCHHHHHHHHHH-HHHHCCCEE
T ss_pred CCCCCEEEEeCChh-----hHH---HHHHHHHHC--------CCcEEEeCCCCCCHHHHHHHHHH-HHHcCCEEE
Confidence 89999998765532 222 444555542 467777 5445678888888774 455687654
No 73
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=56.43 E-value=79 Score=25.65 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=81.5
Q ss_pred CCcEEEEecCc------hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE---ecc
Q 024560 112 KGRIWTMVAGG------GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL---IGG 182 (266)
Q Consensus 112 ~G~Igii~NGa------Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn---i~g 182 (266)
+-||+|+..-- .+---+.|.|..+ |.+ .| +|+---|-+-.+.-+.+.+.+ ..+.++|+.. |=|
T Consensus 13 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--Gv~-~~-i~v~~VPGafEiP~aa~~la~----~~~yDavIaLG~VIrG 84 (156)
T 1c2y_A 13 SFRFAIVVARFNEFVTRRLMEGALDTFKKY--SVN-ED-IDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKG 84 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCC-SC-CEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCC-Cc-eEEEECCcHHHHHHHHHHHHh----cCCCCEEEEecccccC
Confidence 45788886542 4555578999998 444 33 222222334446666666666 6789999887 348
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
+...++-|+ +.+.+.+-+..- ...+||.. -|.-.|.+++.+. +|... ..-=.||+..++++
T Consensus 85 ~T~Hfd~Va---~~v~~gl~~v~L---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nKG~eaA~aAlem 146 (156)
T 1c2y_A 85 DTSHYDAVV---NSASSGVLSAGL---NSGVPCVFGVLTCDNMDQAINR-------AGGKA-----GNKGAESALTAIEM 146 (156)
T ss_dssp SSTHHHHHH---HHHHHHHHHHHH---HHTSCEEEEEECCSSHHHHHHH-------EEETT-----EEHHHHHHHHHHHH
T ss_pred CchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHH-------cCCcc-----cchHHHHHHHHHHH
Confidence 888899888 877777766542 25799885 7777788876542 23211 12446788888887
Q ss_pred hh
Q 024560 262 IM 263 (266)
Q Consensus 262 ~~ 263 (266)
++
T Consensus 147 ~~ 148 (156)
T 1c2y_A 147 AS 148 (156)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 74
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=56.33 E-value=38 Score=29.97 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=69.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. ..++||++-.|++
T Consensus 14 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~----~grvpviaGvg~~ 83 (300)
T 3eb2_A 14 SPVDAEGRVRADVMGRLCDDLIQ-----AGVHGLTPLGSTGEFAYLGTAQ-REAVVRATIEAA----QRRVPVVAGVAST 83 (300)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCSCBBTTSGGGTGGGCCHHH-HHHHHHHHHHHH----TTSSCBEEEEEES
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccCccccCHHH-HHHHHHHHHHHh----CCCCcEEEeCCCC
Confidence 45555678899999999888886 6899998873223211111111 134555555443 1468999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
+..++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 84 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a~ 129 (300)
T 3eb2_A 84 SVADAVAQAKLY-EKLGADGILAILEAYF--PLKDAQIESYFRAIADAV 129 (300)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEEEECCSS--CCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHHC
Confidence 999998887743 344632 1222 247788888887777653
No 75
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=55.67 E-value=73 Score=25.12 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc-chhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH-
Q 024560 149 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA-NFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT- 226 (266)
Q Consensus 149 G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~-~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~- 226 (266)
++.+|+.+..+++.+-+.. |+-+.++|.-+|+.+ +..+.. ..+.++++. .+.-++ .+ +.+..
T Consensus 43 yaHnP~si~a~l~al~~~~---~~~riivvf~~g~~s~r~k~~~---~~~~~~~~~-------aD~vi~--~~-~~~~~~ 106 (163)
T 3mvn_A 43 FAHHPTAITATIDALRAKV---GQQRILAVLEPRSNTMKMGVHK---HELATSLQD-------ADSVFI--YQ-PPTIEW 106 (163)
T ss_dssp CCCSHHHHHHHHHHHHHHH---TTSCEEEEECCC---------C---HHHHHHHTT-------CSEEEE--EC-C----C
T ss_pred CCCCHHHHHHHHHHHHHhc---CCCcEEEEECCCCcchhhHHHH---HHHHHHHhc-------CCEEEE--EC-CCCccc
Confidence 5668888999988875421 333444443345443 222222 333333321 222222 22 33211
Q ss_pred -HHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 227 -GLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 227 -~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
..++++ ..+.+++++ .+.++|++.+.+.++
T Consensus 107 ~~~~~~~----~~~~~~~~~---~d~~eai~~~~~~~~ 137 (163)
T 3mvn_A 107 QVSEVLA----NLAQPAISA---DDVDELVMRIVQQAK 137 (163)
T ss_dssp CHHHHHT----TCCSCEEEE---SSHHHHHHHHHHHCC
T ss_pred CHHHHHh----hCCCCeEEE---CCHHHHHHHHHHhCC
Confidence 223333 334455554 499999999988764
No 76
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=55.53 E-value=1.1e+02 Score=26.83 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=70.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ +.++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 13 TPf~~dg~iD~~~l~~lv~~li~----~~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 83 (293)
T 1f6k_A 13 VSFNEDGTINEKGLRQIIRHNID----KMKVDGLYVGGSTGENFMLSTEE-KKEIFRIAKDEAK----DQIALIAQVGSV 83 (293)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH----TSCCSEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEECCCS
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh----hCCCcEEEeCccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEecCCC
Confidence 34444678899999999888885 47899999883222221111111 1345555554432 469999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-+++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 84 ~t~~ai~la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~va~a 128 (293)
T 1f6k_A 84 NLKEAVELGKYA-TELGYDCLSAVTPFYY--KFSFPEIKHYYDTIIAE 128 (293)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 999998877743 345632 1222 23678888888777754
No 77
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=55.32 E-value=1.1e+02 Score=26.95 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=70.4
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|++
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~ 95 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVD-----KGLDSLVLAGTTGESPTTTAAE-KLELLKAVREEVG----DRAKLIAGVGTN 95 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-----TTCCEEEESSTTTTTTTSCHHH-HHHHHHHHHHHHT----TTSEEEEECCCS
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEecCCCC
Confidence 44555688899999999999886 5899999883333222211111 1345555554431 369999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-.++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 96 st~~ai~la~~A-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a 140 (304)
T 3cpr_A 96 NTRTSVELAEAA-ASAGADGLLVVTPYYS--KPSQEGLLAHFGAIAAA 140 (304)
T ss_dssp CHHHHHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 999998877743 345632 1222 23678888888777754
No 78
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=54.69 E-value=81 Score=27.57 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=65.9
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 144 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 144 ~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
|++=.| .+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+++
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pvi~Gvg~~~ 81 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIK-----SKTDAIIVCGTTGEATTMTETE-RKETIKFVIDKVN----KRIPVIAGTGSNN 81 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSS
T ss_pred CcCCCC-cCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCccc
Confidence 444346 889999999998886 5899999883222221111111 1345555554431 3689999999999
Q ss_pred HHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 224 YQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 224 ~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
-+++.+..+.. +++|.. -+++. .+.++.++.+-.++.+
T Consensus 82 t~~ai~la~~a-~~~Gadavlv~~P~y~~--~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 82 TAASIAMSKWA-ESIGVDGLLVITPYYNK--TTQKGLVKHFKAVSDA 125 (291)
T ss_dssp HHHHHHHHHHH-HHTTCSEEEEECCCSSC--CCHHHHHHHC-CTGGG
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCCCC--CCHHHHHHHHHHHHHh
Confidence 99998877743 345632 12222 3677777777666654
No 79
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=54.55 E-value=1.1e+02 Score=26.81 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcc-cceEEEEeCCCCHHH
Q 024560 148 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGGPNYQT 226 (266)
Q Consensus 148 gG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~-~~pvvvrl~G~~~~~ 226 (266)
.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... . ++||++-.|+++..+
T Consensus 22 dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----g~rvpviaGvg~~~t~~ 91 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-----NGIDAVVPVGTTGESATLTHEE-HRTCIEIAVETCK----GTKVKVLAGAGSNATHE 91 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCCEEECSSTTTTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEEECCCSSHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCCeEEEeCCCCCHHH
Confidence 577888999999888886 6899999883333222211111 1345555554431 3 689999999999999
Q ss_pred HHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 227 GLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 227 ~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 92 ai~la~~a-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 132 (301)
T 3m5v_A 92 AVGLAKFA-KEHGADGILSVAPYYN--KPTQQGLYEHYKAIAQS 132 (301)
T ss_dssp HHHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHh
Confidence 98887753 345642 1222 24778888888777765
No 80
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=54.25 E-value=1.2e+02 Score=27.00 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=65.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHH---------HHHHHhhhccCCCCCeEEEEecccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY---------ARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~a---------l~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
|||+|+.|.-........+.... +-+..-. -+.++++..+. ++-+++ ++++++|+|-.|..
T Consensus 9 rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av----~d~~~~~~~~~~~~~~~~~~~~~ll~----~~~~D~V~i~tp~~- 78 (364)
T 3e82_A 9 NIALIGYGFVGKTFHAPLIRSVP-GLNLAFV----ASRDEEKVKRDLPDVTVIASPEAAVQ----HPDVDLVVIASPNA- 78 (364)
T ss_dssp EEEEECCSHHHHHTHHHHHHTST-TEEEEEE----ECSCHHHHHHHCTTSEEESCHHHHHT----CTTCSEEEECSCGG-
T ss_pred eEEEECCCHHHHHHHHHHHhhCC-CeEEEEE----EcCCHHHHHhhCCCCcEECCHHHHhc----CCCCCEEEEeCChH-
Confidence 68999887532223456665541 1222111 23344443322 233455 89999988865542
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.-+ +-+.++++ ..++|++ .=-..+.++++++... +++.|+.+.+.- ..-...+++++.++.
T Consensus 79 ----~H~---~~~~~al~--------aGk~Vl~EKPla~~~~e~~~l~~~-a~~~g~~~~v~~-~~r~~p~~~~~~~~i 140 (364)
T 3e82_A 79 ----THA---PLARLALN--------AGKHVVVDKPFTLDMQEARELIAL-AEEKQRLLSVFH-NRRWDSDYLGIRQVI 140 (364)
T ss_dssp ----GHH---HHHHHHHH--------TTCEEEECSCSCSSHHHHHHHHHH-HHHTTCCEEECC-CCTTCHHHHHHHHHH
T ss_pred ----HHH---HHHHHHHH--------CCCcEEEeCCCcCCHHHHHHHHHH-HHHhCCeEEEEe-ecccCHHHHHHHHHH
Confidence 112 44444443 2477887 5556788999887764 456787754321 222334555555544
No 81
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=54.14 E-value=90 Score=26.84 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=49.7
Q ss_pred CcEEEEecCchHH-----HHHHHHHHhcCCCCC-CCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGAS-----VIYADTVGDLGYASE-LGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGla-----m~t~D~l~~~g~gg~-pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.... --..+.+..+ |.. +...+-..++.+.+.-+++++-+|+ +.|++++||. .
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 246 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAA--DCRDAGLEWLDPQPSSMQMGADMLDRALA---ERPDCDALFC-------C 246 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHT--TCCCGGGEEEECSCCCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHC--CCCCCChheEecCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------C
Confidence 5799986443221 1245666666 342 2222333566677777777777765 2678888873 3
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
+|.+| -|+++++++.+
T Consensus 247 nD~~A---~g~~~al~~~G 262 (339)
T 3h5o_A 247 NDDLA---IGALARSQQLG 262 (339)
T ss_dssp SHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 67888 99999999875
No 82
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=53.66 E-value=18 Score=30.67 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEE--EecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHH
Q 024560 154 EEVLQYARVVIDCATADPDGRKRAL--LIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 231 (266)
Q Consensus 154 ~~~~~al~~ll~~~~~d~~v~~vlv--ni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L 231 (266)
+.+.++++.+-+ +++++.|.+ |.|||-... + ..|.++++.. ++||++...|.-+-.|--++
T Consensus 60 ~~i~~~L~~l~~----~~~~k~I~l~InSPGG~v~a---g---~~I~~~i~~~-------~~pV~t~v~G~AaS~G~~Ia 122 (218)
T 1y7o_A 60 NSVIAQLLFLDA----QDSTKDIYLYVNTPGGSVSA---G---LAIVDTMNFI-------KADVQTIVMGMAASMGTVIA 122 (218)
T ss_dssp HHHHHHHHHHHH----HCTTSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCCCEEEEEECcCCCHHH---H---HHHHHHHHhc-------CCCEEEEEccEeHHHHHHHH
Confidence 444455444444 566666544 468885422 2 6677777664 57888877776555554444
Q ss_pred H
Q 024560 232 R 232 (266)
Q Consensus 232 ~ 232 (266)
-
T Consensus 123 ~ 123 (218)
T 1y7o_A 123 S 123 (218)
T ss_dssp T
T ss_pred H
Confidence 4
No 83
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=53.37 E-value=81 Score=27.71 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=66.1
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 024560 148 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 227 (266)
Q Consensus 148 gG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~ 227 (266)
.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|+++-.++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gi~v~GttGE~~~Ls~~E-r~~v~~~~~~~~~----grvpviaGvg~~~t~~a 84 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIK-----HGAHGLVPVGTTGESPTLTEEE-HKRVVALVAEQAQ----GRVPVIAGAGSNNPVEA 84 (297)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEECSSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccchhhCCHHH-HHHHHHHHHHHhC----CCCeEEEccCCCCHHHH
Confidence 467888899999888886 5899999873222221111111 1345555554431 36899999999999998
Q ss_pred HHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 228 LAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 228 ~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a 124 (297)
T 2rfg_A 85 VRYAQHA-QQAGADAVLCVAGYYN--RPSQEGLYQHFKMVHDA 124 (297)
T ss_dssp HHHHHHH-HHHTCSEEEECCCTTT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHh
Confidence 8877643 345632 1222 23778888888777764
No 84
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=52.93 E-value=1e+02 Score=29.27 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=18.0
Q ss_pred ceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 213 MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 213 ~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
+|++.=|||.+ |+.++. ..+++.|++.++.
T Consensus 247 k~v~lELGGk~-----------------p~iV~~-dAdl~~A~~~~~~ 276 (490)
T 2wme_A 247 KEVTMELGGKS-----------------PLIIFP-DADLDRAADIAVM 276 (490)
T ss_dssp CEEEEECCCCC-----------------EEEECT-TSCHHHHHHHHHH
T ss_pred ceEEEEcCCcC-----------------eEEEcc-CccHHHHHHHHHH
Confidence 56666777744 445554 5566666666554
No 85
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=52.51 E-value=60 Score=28.72 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=64.1
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHH-----------HHHHHhhhccCCCCCeEEEEecc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY-----------ARVVIDCATADPDGRKRALLIGG 182 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~a-----------l~~ll~~~~~d~~v~~vlvni~g 182 (266)
|||+|+.|.-........+.... +.+..-.+|.. ..+++.+. ++-+++ ++++++|+|-.|.
T Consensus 4 rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~---~~~~~a~~~~~~~~~~~~~~~~ll~----~~~~D~V~i~tp~ 75 (349)
T 3i23_A 4 KMGFIGFGKSANRYHLPYVMIRE-TLEVKTIFDLH---VNEKAAAPFKEKGVNFTADLNELLT----DPEIELITICTPA 75 (349)
T ss_dssp EEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECTT---CCHHHHHHHHTTTCEEESCTHHHHS----CTTCCEEEECSCG
T ss_pred EEEEEccCHHHHHHHHHHHhhCC-CeEEEEEECCC---HHHHHHHhhCCCCCeEECCHHHHhc----CCCCCEEEEeCCc
Confidence 68888877632223445554431 22222223322 23334332 233455 8899988876554
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
.. +++-+.++++ ..++|++ .=-..+.++++++.+ .+++.|+.+.+.- ..-...+++.+.++
T Consensus 76 ~~--------h~~~~~~al~--------aGk~Vl~EKP~a~~~~e~~~l~~-~a~~~g~~~~v~~-~~r~~p~~~~~~~~ 137 (349)
T 3i23_A 76 HT--------HYDLAKQAIL--------AGKSVIVEKPFCDTLEHAEELFA-LGQEKGVVVMPYQ-NRRFDGDYLAMKQV 137 (349)
T ss_dssp GG--------HHHHHHHHHH--------TTCEEEECSCSCSSHHHHHHHHH-HHHHTTCCEEECC-GGGGCHHHHHHHHH
T ss_pred HH--------HHHHHHHHHH--------cCCEEEEECCCcCCHHHHHHHHH-HHHHcCCeEEEEe-cccCCHHHHHHHHH
Confidence 21 1244444443 2477887 555678899988877 4556788764321 11223344555444
Q ss_pred h
Q 024560 262 I 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 138 i 138 (349)
T 3i23_A 138 V 138 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=52.49 E-value=14 Score=36.23 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCeEEEEe--cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHH
Q 024560 151 PNEEEVLQYARVVIDCATADPDGRKRALLI--GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGL 228 (266)
Q Consensus 151 a~~~~~~~al~~ll~~~~~d~~v~~vlvni--~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~ 228 (266)
...+.+.++++-+.+ |+++++|++-+ +||-.... +.|-+.++... ..++||++.++|.-...|-
T Consensus 322 ~~~~~l~~~L~~a~~----d~~vkaVVL~i~spGG~~~~~------~~i~~~i~~l~----~~~kPVia~v~g~AasgG~ 387 (593)
T 3bf0_A 322 VGGDTTAAQIRDARL----DPKVKAIVLRVNSPGGSVTAS------EVIRAELAAAR----AAGKPVVVSMGGMAASGGY 387 (593)
T ss_dssp EEHHHHHHHHHHHHH----CTTEEEEEEEEEEEEECHHHH------HHHHHHHHHHH----HTTCCEEEEEEEEEETHHH
T ss_pred hHHHHHHHHHHHHHh----CCCCCEEEEEecCCCCCHHHH------HHHHHHHHHHH----hCCCCEEEEECCChHHHHH
Confidence 456788888888777 99999999875 66543221 22333444432 1468999888876544443
Q ss_pred H
Q 024560 229 A 229 (266)
Q Consensus 229 ~ 229 (266)
.
T Consensus 388 ~ 388 (593)
T 3bf0_A 388 W 388 (593)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=52.42 E-value=40 Score=28.29 Aligned_cols=118 Identities=7% Similarity=0.055 Sum_probs=66.8
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+... ...+.+..+ |........+.++.+.+..+++++-+|+ ..|.+++|+..
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~------- 195 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDF--GLTEFPIDAVTIETPLEKIRDFGQRLMQ---SSDRPDGIVSI------- 195 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHT--TCEECCCCSCCTTSCHHHHHHHHHHHTT---SSSCCSEEEES-------
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHc--CCCcchhheeccccchHHHHHHHHHHHh---CCCCCcEEEEc-------
Confidence 56888865433221 234556665 3322221224556677777777776665 35788888843
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-..+... + +.+. -++.+. ..++++..+.++++.
T Consensus 196 ~d~~A---~g~~~al~~~g-----~~vP~di~vig~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~a~~~l 254 (288)
T 3gv0_A 196 SGSST---IALVAGFEAAG-----VKIGEDVDIVSKQSAEF--L-NWIK-----PQIHTV----NEDIKLAGRELAKAL 254 (288)
T ss_dssp CHHHH---HHHHHHHHTTT-----CCTTTSCEEEEEESSTT--H-HHHC-----TTSEEE----ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecChHH--H-hccC-----CCceEE----ecCHHHHHHHHHHHH
Confidence 67788 99999999875 3333 3345555431 1 1121 134332 347788777777765
No 88
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=52.41 E-value=1.1e+02 Score=28.65 Aligned_cols=22 Identities=0% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhCCceeeEe
Q 024560 21 IGDFIMGVFAVFQDLDFSFIEM 42 (266)
Q Consensus 21 ~~~ii~~Ly~~f~~~D~~l~EI 42 (266)
=.+++.++.++..++--.|+++
T Consensus 68 R~~~L~~~a~~l~~~~~~la~~ 89 (490)
T 2ve5_A 68 RSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666554444443
No 89
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=52.38 E-value=78 Score=27.16 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=48.2
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++...+.. --..+.+..+ |.+.....-+.++.+.+.-+++++-+|+ . ++++||. .
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~ai~~-------~ 246 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEA--NIEFDENLVFEGNYSYEQGKALAERLLE----R-GATSAVV-------S 246 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEECSCCSHHHHHHHHHHHHH----T-TCCEEEE-------S
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHc--CCCCChhhEEeCCCCHHHHHHHHHHHhc----c-CCCEEEE-------C
Confidence 6799986543321 1245677776 4433221223455677777777777777 4 6777774 2
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| -|+++++++.+
T Consensus 247 ~d~~A---~g~~~al~~~G 262 (332)
T 2o20_A 247 HDTVA---VGLLSAMMDKG 262 (332)
T ss_dssp CHHHH---HHHHHHHHHTT
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 67788 99999999874
No 90
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=52.24 E-value=1.2e+02 Score=26.85 Aligned_cols=110 Identities=9% Similarity=-0.080 Sum_probs=70.1
Q ss_pred Ccee-eccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 024560 142 GNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 220 (266)
Q Consensus 142 AN~l-DlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~ 220 (266)
--|+ +=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GtTGE~~~Ls~eE-r~~vi~~~~~~~~----grvpViaGvg 89 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQ-----NGIEVIVPNGNTGEFYALTIEE-AKQVATRVTELVN----GRATVVAGIG 89 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHH-----TTCSEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eccccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEECcccCChhhCCHHH-HHHHHHHHHHHhC----CCCeEEecCC
Confidence 3555 55688999999999999986 5899998873222111111111 1445555554431 4699999999
Q ss_pred CCCHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhhc
Q 024560 221 GPNYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMSA 265 (266)
Q Consensus 221 G~~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~~ 265 (266)
+ +-.++.+..+.. +++|.. -+++ -.+.++.++.+-.++.+.
T Consensus 90 ~-st~~ai~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 90 Y-SVDTAIELGKSA-IDSGADCVMIHQPVHP--YITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp S-SHHHHHHHHHHH-HHTTCSEEEECCCCCS--CCCHHHHHHHHHHHHHHS
T ss_pred c-CHHHHHHHHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHhC
Confidence 9 989888877643 445632 1222 237788888887777653
No 91
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=52.19 E-value=90 Score=26.03 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=48.0
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
++|++++...+... -..+.+..+ |.++ .+ -+.++.+.+.-+++++-+|+ +.|++++||. .
T Consensus 139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~-~~-~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 204 (293)
T 2iks_A 139 ETVLYLGALPELSVSFLREQGFRTAWKDD--PREV-HF-LYANSYEREAAAQLFEKWLE---THPMPQALFT-------T 204 (293)
T ss_dssp SSEEEEEECTTSHHHHHHHHHHHHHHTTC--CCCE-EE-EEESSSCHHHHHHHHHHHTT---TSCCCSEEEE-------S
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHHHc--CCCc-cE-EEcCCCChhhHHHHHHHHHh---cCCCCCEEEE-------C
Confidence 67999975433221 234566666 3222 11 23456677777777766665 2577888874 2
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| .|+++++++.+
T Consensus 205 ~d~~a---~g~~~al~~~g 220 (293)
T 2iks_A 205 SFALL---QGVMDVTLRRD 220 (293)
T ss_dssp SHHHH---HHHHHHHHHHH
T ss_pred ChHHH---HHHHHHHHHcC
Confidence 67788 99999999875
No 92
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=52.17 E-value=54 Score=28.35 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=50.1
Q ss_pred CcEEEEecCc--hHH-----HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 113 GRIWTMVAGG--GAS-----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 113 G~Igii~NGa--Gla-----m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
.+|++++... ... --..+.+..+ |-.+....-+.++.+.+.-+++++-+|+ +.|++++||.
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 253 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKN--GVEIEDREFYSGGSALAKGREMTQAMLE---RSPDLDFLYY------- 253 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHT--TCCCSCEEECSSCCCHHHHHHHHHHHHH---HSTTCCEEEE-------
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHc--CCCCChheEEeCCCCHHHHHHHHHHHHh---cCCCCCEEEE-------
Confidence 5688886543 111 1234666666 3443333334567777777777776665 2678888873
Q ss_pred chhHhhhhHHHHHHHHHHhh
Q 024560 186 NFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~ 205 (266)
.+|.+| -|+++++++.+
T Consensus 254 ~nd~~A---~g~~~al~~~g 270 (344)
T 3kjx_A 254 SNDMIA---AGGLLYLLEQG 270 (344)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHHHcC
Confidence 367888 99999999875
No 93
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=51.99 E-value=1e+02 Score=27.44 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=59.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH------------HHHHhhhccCCCCCeEEEEe
Q 024560 113 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA------------RVVIDCATADPDGRKRALLI 180 (266)
Q Consensus 113 G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al------------~~ll~~~~~d~~v~~vlvni 180 (266)
=|||+|+-|..........+... +.+..-.+ +.++++..+.. +-+++ ++++++|+|-.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~--~~~lvav~----d~~~~~a~~~a~~~~~~~~~~~~~~ll~----~~~vD~V~I~t 96 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA--GARLAGFH----EKDDALAAEFSAVYADARRIATAEEILE----DENIGLIVSAA 96 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT--TCEEEEEE----CSCHHHHHHHHHHSSSCCEESCHHHHHT----CTTCCEEEECC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC--CcEEEEEE----cCCHHHHHHHHHHcCCCcccCCHHHHhc----CCCCCEEEEeC
Confidence 37999998865433344555443 34432222 23444433322 22344 89999998754
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
|. ..-+ +-+..+++ ..++|++ .=-..+.++++++++. +++.|+.+.
T Consensus 97 p~-----~~H~---~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~g~~l~ 143 (361)
T 3u3x_A 97 VS-----SERA---ELAIRAMQ--------HGKDVLVDKPGMTSFDQLAKLRRV-QAETGRIFS 143 (361)
T ss_dssp CH-----HHHH---HHHHHHHH--------TTCEEEEESCSCSSHHHHHHHHHH-HHTTCCCEE
T ss_pred Ch-----HHHH---HHHHHHHH--------CCCeEEEeCCCCCCHHHHHHHHHH-HHHcCCEEE
Confidence 42 2222 44455554 2477887 6567788999888774 456788754
No 94
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=51.30 E-value=74 Score=25.76 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=82.0
Q ss_pred CCcEEEEecCc------hHHHHHHHHHHhcCCCCCCCce--eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE---e
Q 024560 112 KGRIWTMVAGG------GASVIYADTVGDLGYASELGNY--AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL---I 180 (266)
Q Consensus 112 ~G~Igii~NGa------Glam~t~D~l~~~g~gg~pAN~--lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn---i 180 (266)
+-||||+..-- .+---+.|.|..+ |.+..|. +.+.|.- .+.-+.+.+.+ ..+.++|+.. |
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~ga~~~l~~~--gv~~~~i~v~~VPGaf---EiP~aa~~la~----~~~yDavIaLG~VI 82 (154)
T 1rvv_A 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRH--GVDTNDIDVAWVPGAF---EIPFAAKKMAE----TKKYDAIITLGTVI 82 (154)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHT--TCCGGGEEEEEESSGG---GHHHHHHHHHH----TSCCSEEEEEEEEE
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHH---HHHHHHHHHHh----cCCCCEEEEeeeee
Confidence 45788886542 4555578999998 5655543 3455533 25555566666 6779999887 3
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHH
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 259 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av 259 (266)
=|+...++-|+ +.+.+.+-+.+- ...+||.- -|.-.|.+++.+. +|... ..-=.||+..++
T Consensus 83 rG~T~Hfd~V~---~~vs~Gl~~v~l---~~~vPV~~GVLT~~~~eQA~~R-------ag~~~-----~nkG~eaA~aal 144 (154)
T 1rvv_A 83 RGATTHYDYVC---NEAAKGIAQAAN---TTGVPVIFGIVTTENIEQAIER-------AGTKA-----GNKGVDCAVSAI 144 (154)
T ss_dssp CCSSSHHHHHH---HHHHHHHHHHHH---HHCSCEEEEEEEESSHHHHHHT-------EEETT-----EEHHHHHHHHHH
T ss_pred cCCchHHHHHH---HHHHHHHHHHHh---hhCCCEEEEecCCCCHHHHHHH-------hcccc-----cchHHHHHHHHH
Confidence 58988899888 777777766542 25799884 6666788887432 34321 124567888888
Q ss_pred HHhh
Q 024560 260 DCIM 263 (266)
Q Consensus 260 ~~~~ 263 (266)
++++
T Consensus 145 em~~ 148 (154)
T 1rvv_A 145 EMAN 148 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 95
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=50.84 E-value=1.3e+02 Score=28.59 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 161 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 161 ~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
+.+++ +|.++.|. |.| ++.+. +.|.++..+. -+|++.=|||.+
T Consensus 233 ~~L~~----~p~vd~I~---FTG---S~~vG---~~i~~~aa~~-------lkpv~lELGGk~ 275 (521)
T 4e4g_A 233 DAILT----HPDIAAVS---FVG---STPIA---RYVYGTAAMN-------GKRAQCFGGAKN 275 (521)
T ss_dssp HHHHT----CTTCCEEE---EES---CHHHH---HHHHHHHHHT-------TCEEEEECCCCE
T ss_pred HHHHh----CCCcCEEE---EEC---CHHHH---HHHHHHHhhc-------CCCeeecCCCCC
Confidence 34455 78877554 333 23334 6665554432 367777777744
No 96
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=50.75 E-value=68 Score=26.14 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCcEEEEecCc------hHHHHHHHHHHh-cCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE---
Q 024560 112 KGRIWTMVAGG------GASVIYADTVGD-LGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL--- 179 (266)
Q Consensus 112 ~G~Igii~NGa------Glam~t~D~l~~-~g~gg~pAN--~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn--- 179 (266)
+-||+|+..-- .+---+.|.|.. + |.+..| -+.+.|.-. +.-+.+.+.+ ..+.++|+..
T Consensus 17 ~~riaIV~arfn~~I~~~Ll~ga~~~l~~~~--Gv~~~~i~v~~VPGafE---iP~aa~~la~----~~~yDavIaLG~V 87 (159)
T 1kz1_A 17 ELRILIVHARGNLQAIEPLVKGAVETMIEKH--DVKLENIDIESVPGSWE---LPQGIRASIA----RNTYDAVIGIGVL 87 (159)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHHH--CCCGGGEEEEECSSGGG---HHHHHHHHHH----HSCCSEEEEEEEE
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHHH---HHHHHHHHHh----cCCCCEEEEeccc
Confidence 45788886542 455557899999 8 566666 445555433 4455555655 5678998887
Q ss_pred ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCC-ceeecCCCCCHHHHHHH
Q 024560 180 IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGI-PLEVYGPEATMTGICKQ 257 (266)
Q Consensus 180 i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gi-p~~~~~~~~~~~eAv~~ 257 (266)
|=|+...++-|+ +.+.+.+-+..- ...+||.. -|.-.|.+++.+.- |+ .. ..-=.||+..
T Consensus 88 IrG~T~Hfd~Va---~~v~~Gl~~v~L---~~~vPV~~GVLT~~~~eQA~~Ra-------g~~~~-----~nKG~eaA~a 149 (159)
T 1kz1_A 88 IKGSTMHFEYIS---EAVVHGLMRVGL---DSGVPVILGLLTVLNEEQALYRA-------GLNGG-----HNHGNDWGSA 149 (159)
T ss_dssp ECCSSSHHHHHH---HHHHHHHHHHHH---HHCCCEEEEEEEESSHHHHHHHB-------TCTTC-----CBHHHHHHHH
T ss_pred ccCCchHHHHHH---HHHHHHHHHHHh---hcCCCEEEEEeCCCCHHHHHHHh-------CCccc-----cchHHHHHHH
Confidence 458888899888 888887776542 25799885 77777888876532 32 11 1245679999
Q ss_pred HHHHhh
Q 024560 258 AIDCIM 263 (266)
Q Consensus 258 av~~~~ 263 (266)
++++++
T Consensus 150 alem~~ 155 (159)
T 1kz1_A 150 AVEMGL 155 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 97
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=50.69 E-value=13 Score=33.46 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=47.9
Q ss_pred HHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhc
Q 024560 160 ARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEEL 238 (266)
Q Consensus 160 l~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~ 238 (266)
++-+++ ++++++|+|-.|.. .-+ +-+..+++ ..++|++ .=-..+.++++++.+. +++.
T Consensus 57 ~~~ll~----~~~vD~V~i~tp~~-----~H~---~~~~~al~--------aGkhVl~EKP~a~~~~ea~~l~~~-a~~~ 115 (362)
T 3fhl_A 57 FKELTE----DPEIDLIVVNTPDN-----THY---EYAGMALE--------AGKNVVVEKPFTSTTKQGEELIAL-AKKK 115 (362)
T ss_dssp SHHHHT----CTTCCEEEECSCGG-----GHH---HHHHHHHH--------TTCEEEEESSCCSSHHHHHHHHHH-HHHH
T ss_pred HHHHhc----CCCCCEEEEeCChH-----HHH---HHHHHHHH--------CCCeEEEecCCCCCHHHHHHHHHH-HHHc
Confidence 344566 89999988876542 112 44444443 2477887 5556789999888774 4566
Q ss_pred CCceeecCCCCCHHHHHHHHHHHh
Q 024560 239 GIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 239 Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
|+.+.+.- ..-...+++++.++.
T Consensus 116 g~~~~v~~-~~R~~p~~~~~k~~i 138 (362)
T 3fhl_A 116 GLMLSVYQ-NRRWDADFLTVRDIL 138 (362)
T ss_dssp TCCEEEEC-GGGGSHHHHHHHHHH
T ss_pred CCEEEEEe-cceeCHHHHHHHHHH
Confidence 88764321 112344555555554
No 98
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=50.66 E-value=1.1e+02 Score=27.10 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=68.6
Q ss_pred Cceeec-cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeC
Q 024560 142 GNYAEY-SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRG 220 (266)
Q Consensus 142 AN~lDl-gG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~ 220 (266)
--|++= .|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|
T Consensus 20 vTPf~~~dg~iD~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~v~~~~v~~~~----grvpViaGvg 89 (316)
T 3e96_A 20 ITPFRKSDGSIDWHHYKETVDRIVD-----NGIDVIVPCGNTSEFYALSLEE-AKEEVRRTVEYVH----GRALVVAGIG 89 (316)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHT-----TTCCEECTTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSEEEEEEC
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHH-----cCCCEEEeCccccCcccCCHHH-HHHHHHHHHHHhC----CCCcEEEEeC
Confidence 355665 688999999999888885 6899999873222222111111 1345555544431 3689998887
Q ss_pred CCCHHHHHHHHHhhhhhcCC-------ceeecCCCCCHHHHHHHHHHHhhh
Q 024560 221 GPNYQTGLAKMRALGEELGI-------PLEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 221 G~~~~~~~~~L~~~~~~~Gi-------p~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
. +..++.+..+.. +++|. |.+ ...+.++.++.+-.++.+
T Consensus 90 ~-~t~~ai~la~~A-~~~Gadavlv~~P~y---~~~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 90 Y-ATSTAIELGNAA-KAAGADAVMIHMPIH---PYVTAGGVYAYFRDIIEA 135 (316)
T ss_dssp S-SHHHHHHHHHHH-HHHTCSEEEECCCCC---SCCCHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHH-HhcCCCEEEEcCCCC---CCCCHHHHHHHHHHHHHh
Confidence 5 888888776643 34563 332 134788888888887764
No 99
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=50.38 E-value=1.3e+02 Score=26.19 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCCCCCc-eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhh
Q 024560 128 YADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKES 206 (266)
Q Consensus 128 t~D~l~~~g~gg~pAN-~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~ 206 (266)
..+.+..+ |-.+.. ++-..++.+.+.-+++++-+|+ ..|.+++||. .+|.+| -|+++++++.+
T Consensus 228 f~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~nD~~A---~g~~~al~~~G- 291 (366)
T 3h5t_A 228 AMEVFIEA--GIDPGTVPIMECWINNRQHNFEVAKELLE---THPDLTAVLC-------TVDALA---FGVLEYLKSVG- 291 (366)
T ss_dssp HHHHHHHH--TCCGGGSCEEEESSCCHHHHHHHHHHHHH---HCTTCCEEEE-------SSHHHH---HHHHHHHHHTT-
T ss_pred HHHHHHHC--CCCCCcceEEEcCCCCHHHHHHHHHHHHc---CCCCCcEEEE-------CCcHHH---HHHHHHHHHcC-
Confidence 56778887 343322 3334566777777777777765 2678888884 367888 99999999875
Q ss_pred hhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 207 KLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 207 ~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.++| -|+-..+.. .+. .. ++.+. ..++.+..+.|+++.
T Consensus 292 ----~~vP~disvigfD~~~--~~~--~~------~lttv----~q~~~~~G~~Av~~L 332 (366)
T 3h5t_A 292 ----KSAPADLSLTGFDGTH--MAL--AR------DLTTV----IQPNKLKGFKAGETL 332 (366)
T ss_dssp ----CCTTTTCEEEEEECCH--HHH--HT------TCCEE----ECCHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEEECCCh--hhc--CC------CccEE----EeCHHHHHHHHHHHH
Confidence 3333 244555543 222 12 44432 347777777777654
No 100
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=50.26 E-value=1.1e+02 Score=25.32 Aligned_cols=122 Identities=10% Similarity=0.003 Sum_probs=66.1
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCC-CCceeeccCCCCHHHHHHHHHHHHhhhccCC---CCCeEEEEecc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASE-LGNYAEYSGAPNEEEVLQYARVVIDCATADP---DGRKRALLIGG 182 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~-pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~---~v~~vlvni~g 182 (266)
++|++++.-.+... ...+.+..++ |-+ .....-..++.+.+..+++++-+++ +.| ++++|+.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~ai~~---- 197 (291)
T 3l49_A 126 GNVLVFNGFYSVPVCKIRYDQMKYVLEAFP-DVKIIEPELRDVIPNTIQSAYSNVTDMLT---KYPNEGDVGAIWA---- 197 (291)
T ss_dssp EEEEEECSCTTSHHHHHHHHHHHHHHHTCT-TEEECSSCBCCCSSSHHHHHHHHHHHHHH---HCCSTTSCCEEEE----
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHHCC-CCEEEeeeccCCCCCCHHHHHHHHHHHHH---hCCCcCCcCEEEE----
Confidence 57998854333221 1245565552 122 1111112334455666666666554 367 8888873
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCC--ceeecCCCCCHHHHHHHHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGI--PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gi--p~~~~~~~~~~~eAv~~av~ 260 (266)
.++.+| .|+++++++.+. .++.|+ -.++ ...+.+.+.+ |. +.... ..++++..+.+++
T Consensus 198 ---~~d~~a---~g~~~al~~~g~----~di~vv-g~d~--~~~~~~~i~~-----~~~p~lttv--~~~~~~~g~~av~ 257 (291)
T 3l49_A 198 ---CWDVPM---IGATQALQAAGR----TDIRTY-GVDG--SPEFVEMVAD-----PESPAGAVA--AQQPSEIGKLAVQ 257 (291)
T ss_dssp ---SSHHHH---HHHHHHHHHTTC----CSCEEE-EEEC--CHHHHHHHHC-----TTSCEEEEE--ECCHHHHHHHHHH
T ss_pred ---CCCchH---HHHHHHHHHcCC----CCeEEE-EecC--CHHHHHHHHC-----CCCCeEEEE--ecCHHHHHHHHHH
Confidence 367788 999999998752 144444 3333 4556666652 43 22211 3477777776666
Q ss_pred Hh
Q 024560 261 CI 262 (266)
Q Consensus 261 ~~ 262 (266)
++
T Consensus 258 ~l 259 (291)
T 3l49_A 258 NV 259 (291)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 101
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=50.23 E-value=91 Score=25.54 Aligned_cols=90 Identities=9% Similarity=0.029 Sum_probs=53.4
Q ss_pred CcEEEEecCc-h-----HHH-----HHHHHHHhcCCCCCCC-ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 024560 113 GRIWTMVAGG-G-----ASV-----IYADTVGDLGYASELG-NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI 180 (266)
Q Consensus 113 G~Igii~NGa-G-----lam-----~t~D~l~~~g~gg~pA-N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni 180 (266)
.+|++++.-. + .+. -..+.+..+ |-++. .++ +.++.+.+.-+++++-+++ +.|++++|+.
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-- 186 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEA--GRPFSPDRL-YITRHSQEGGRLALRHFLE---KASPPLNVFA-- 186 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHT--TCCCCGGGE-EEECSSHHHHHHHHHHHHT---TCCSSEEEEC--
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHc--CCCCChHHe-eecCCChHHHHHHHHHHHh---CCCCCCEEEE--
Confidence 5799887543 3 111 245677777 44432 222 2344566666677666665 2567887762
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccce--E-EEEeCCCC
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMH--I-FVRRGGPN 223 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p--v-vvrl~G~~ 223 (266)
.++.+| .|+++++++.+ .++| | |+-.++..
T Consensus 187 -----~~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~ 219 (276)
T 2h0a_A 187 -----GADQVA---LGVLEEAVRLG-----LTPGRDVRVLGFDGHP 219 (276)
T ss_dssp -----SSHHHH---HHHHHHHHTTS-----CTTTTSEEEEEESCCT
T ss_pred -----CCcHHH---HHHHHHHHHcC-----CCCCCCeEEEEeCCCc
Confidence 367788 99999999874 3333 2 34666655
No 102
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=49.70 E-value=86 Score=25.68 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=64.2
Q ss_pred CCcEEEEecCc-----hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 112 KGRIWTMVAGG-----GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 112 ~G~Igii~NGa-----Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.++|-+.+-++ |+.|+ ..++..+| -.-.++|-+.+++.+.++++-. +.++|.+-.. .+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~v-a~~l~~~G-----~~v~~LG~~vp~~~l~~~~~~~--------~~d~v~lS~~--~~~ 151 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLV-AMMLESGG-----FTVYNLGVDIEPGKFVEAVKKY--------QPDIVGMSAL--LTT 151 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHH-HHHHHHTT-----CEEEECCSSBCHHHHHHHHHHH--------CCSEEEEECC--SGG
T ss_pred CCEEEEEeCCCcccHHHHHHH-HHHHHHCC-----CEEEECCCCCCHHHHHHHHHHc--------CCCEEEEecc--ccc
Confidence 45554444442 55554 35666652 3457889999999887774332 4455665432 222
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
...-. +-+++.+++... ..+.||++ ||.-..+ +..+ +.|...+ ..+..+|++.+-++.
T Consensus 152 ~~~~~---~~~i~~l~~~~~---~~~~~v~v--GG~~~~~--~~~~----~~gad~~----~~da~~av~~~~~l~ 209 (210)
T 1y80_A 152 TMMNM---KSTIDALIAAGL---RDRVKVIV--GGAPLSQ--DFAD----EIGADGY----APDAASATELCRQLL 209 (210)
T ss_dssp GTHHH---HHHHHHHHHTTC---GGGCEEEE--ESTTCCH--HHHH----HHTCSEE----CSSHHHHHHHHHHHC
T ss_pred cHHHH---HHHHHHHHhcCC---CCCCeEEE--ECCCCCH--HHHH----HcCCeEE----ECCHHHHHHHHHHHh
Confidence 22222 666777776421 12355544 5654332 2223 4476553 569999998887653
No 103
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=49.41 E-value=1.3e+02 Score=26.69 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=63.4
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH---------HHHHhhhccCCCCCeEEEEecccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA---------RVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al---------~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
+||+|+.|.-........+.... +-+..-. -+.++++..+.+ +-+++ ++++++|+|-.|...
T Consensus 7 rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av----~d~~~~~~~~~~~~~~~~~~~~~ll~----~~~vD~V~i~tp~~~ 77 (358)
T 3gdo_A 7 KVGILGYGLSGSVFHGPLLDVLD-EYQISKI----MTSRTEEVKRDFPDAEVVHELEEITN----DPAIELVIVTTPSGL 77 (358)
T ss_dssp EEEEECCSHHHHHTTHHHHTTCT-TEEEEEE----ECSCHHHHHHHCTTSEEESSTHHHHT----CTTCCEEEECSCTTT
T ss_pred eEEEEccCHHHHHHHHHHHhhCC-CeEEEEE----EcCCHHHHHhhCCCCceECCHHHHhc----CCCCCEEEEcCCcHH
Confidence 68898877532222345554431 1121111 123444433221 23444 899999887665432
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
-+ +-+..+++ ..++|++ .=-..+.++++++... +++.|+.+.+.- ..-...+++++.++.
T Consensus 78 -----H~---~~~~~al~--------aGkhVl~EKPla~~~~e~~~l~~~-a~~~g~~~~v~~-~~r~~p~~~~~k~~i 138 (358)
T 3gdo_A 78 -----HY---EHTMACIQ--------AGKHVVMEKPMTATAEEGETLKRA-ADEKGVLLSVYH-NRRWDNDFLTIKKLI 138 (358)
T ss_dssp -----HH---HHHHHHHH--------TTCEEEEESSCCSSHHHHHHHHHH-HHHHTCCEEEEC-GGGGSHHHHHHHHHH
T ss_pred -----HH---HHHHHHHH--------cCCeEEEecCCcCCHHHHHHHHHH-HHHcCCeEEEee-ecccCHHHHHHHHHH
Confidence 11 44444443 2477887 5446688999887763 456687754321 112334555555544
No 104
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=49.05 E-value=29 Score=33.86 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCeEEEEe--cc-c-ccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHH
Q 024560 151 PNEEEVLQYARVVIDCATADPDGRKRALLI--GG-G-IANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQT 226 (266)
Q Consensus 151 a~~~~~~~al~~ll~~~~~d~~v~~vlvni--~g-g-i~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~ 226 (266)
.+.+.+.++++-+-+ |+++++|++.| || | .+.+ +.|-+++++++. ..+|+++...+ +..
T Consensus 70 ~~~~~i~~~L~~a~~----d~~ik~I~L~inspGgG~v~~~-------~~I~~~i~~~k~----~gkpvva~~~~--aas 132 (593)
T 3bf0_A 70 NSLFDIVNTIRQAKD----DRNITGIVMDLKNFAGGDQPSM-------QYIGKALKEFRD----SGKPVYAVGEN--YSQ 132 (593)
T ss_dssp EEHHHHHHHHHHHHH----CTTCCCEEEECTEEEECCHHHH-------HHHHHHHHHHHH----TTCCEEEEESC--EEH
T ss_pred cCHHHHHHHHHHHHh----CCCceEEEEEeCCCCCCcHHHH-------HHHHHHHHHHHh----cCCeEEEEEcc--chh
Confidence 357788888777777 99999999985 66 3 3223 556666676642 35899987433 444
Q ss_pred HHHHHH
Q 024560 227 GLAKMR 232 (266)
Q Consensus 227 ~~~~L~ 232 (266)
+-=.|.
T Consensus 133 ~~y~lA 138 (593)
T 3bf0_A 133 GQYYLA 138 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444454
No 105
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=48.16 E-value=1.2e+02 Score=28.61 Aligned_cols=22 Identities=0% Similarity=0.067 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhCCceeeE
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~E 41 (266)
+=.+++.++.++..++--.|++
T Consensus 81 ~R~~~L~~~a~~l~~~~~ela~ 102 (503)
T 1a4s_A 81 ERSRVMLEAARIIRERRDNIAK 102 (503)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666665544444
No 106
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=47.49 E-value=97 Score=27.33 Aligned_cols=106 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCCCCceeeccCCC------CHHHHHHHHHHHHhhhccCCCCCeEEEEecccccch---hHhhhhHHHHH
Q 024560 128 YADTVGDLGYASELGNYAEYSGAP------NEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF---TDVATTFNGII 198 (266)
Q Consensus 128 t~D~l~~~g~gg~pAN~lDlgG~a------~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~---~~vA~~~~gii 198 (266)
..+.+...++ +.| =.+.++++. ..+.+.++++.+- +..+++-+|+....++. .+-......++
T Consensus 123 ~~~~~~~~~~-~~~-~~v~i~~~~~~~i~~~~~~~~~aa~~~~------~g~d~iein~~sP~~~g~~~~~~~~~~~~il 194 (336)
T 1f76_A 123 LVENVKKAHY-DGV-LGINIGKNKDTPVEQGKDDYLICMEKIY------AYAGYIAINISSPNTPGLRTLQYGEALDDLL 194 (336)
T ss_dssp HHHHHHHCCC-CSE-EEEEECCCTTSCGGGTHHHHHHHHHHHG------GGCSEEEEECCCSSSTTGGGGGSHHHHHHHH
T ss_pred HHHHHHhccc-CCc-EEEEecCCCCCcccccHHHHHHHHHHHh------ccCCEEEEEccCCCCCCcccccCHHHHHHHH
Confidence 4566766521 112 223455543 2677888877652 36889999963222220 00011124566
Q ss_pred HHHHHhhhhh---hcccceEEEEeCCCC-HHHHHHHHHhhhhhcCCce
Q 024560 199 RALREKESKL---KAARMHIFVRRGGPN-YQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 199 ~al~~~~~~~---~~~~~pvvvrl~G~~-~~~~~~~L~~~~~~~Gip~ 242 (266)
+++++..... .+.++||++++.... .++..++.+ .++++|+..
T Consensus 195 ~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~-~l~~~Gvd~ 241 (336)
T 1f76_A 195 TAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVAD-SLVRHNIDG 241 (336)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHH-HHHHTTCSE
T ss_pred HHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHH-HHHHcCCcE
Confidence 6666542100 012689999988652 223322222 222568763
No 107
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=47.43 E-value=1e+02 Score=29.49 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=10.7
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 276 p~iV~~-dADl~~Aa~~i~~ 294 (528)
T 3u4j_A 276 PQIVFA-DADLDAAADGIAY 294 (528)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eeEECC-CCCHHHHHHHHHH
Confidence 445554 4466666666554
No 108
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=47.21 E-value=92 Score=29.62 Aligned_cols=23 Identities=0% Similarity=-0.047 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhCCceeeEe
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIEM 42 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~EI 42 (266)
+=.+++.++.++..++--.|+++
T Consensus 72 ~R~~~L~~~a~~l~~~~~ela~~ 94 (506)
T 3rh9_A 72 TRRKWLEDIRDGLKENREEIGRI 94 (506)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455666666666554444443
No 109
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=47.09 E-value=1.3e+02 Score=28.36 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhCCceeeEe
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIEM 42 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~EI 42 (266)
+=.+++.++.++..++--.|+++
T Consensus 71 ~R~~~L~~~a~~l~~~~~ela~~ 93 (495)
T 3b4w_A 71 ERAAVIAAAVKMLAERKDLFTKL 93 (495)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776665545544
No 110
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=46.22 E-value=13 Score=33.08 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=57.3
Q ss_pred cEEEEecCchHHH-HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccC-CCCCeEEEEecccccchhHhh
Q 024560 114 RIWTMVAGGGASV-IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD-PDGRKRALLIGGGIANFTDVA 191 (266)
Q Consensus 114 ~Igii~NGaGlam-~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d-~~v~~vlvni~ggi~~~~~vA 191 (266)
|||+|+.|. .+- ..+..+.... +-+..-.+|.......-..+.-++-+++ + |++++|+|-.|. ..-+
T Consensus 27 rvgiiG~G~-ig~~~~~~~l~~~~-~~~lvav~d~~~~~~g~~~~~~~~~ll~----~~~~vD~V~i~tp~-----~~H~ 95 (330)
T 4ew6_A 27 NLAIVGVGK-IVRDQHLPSIAKNA-NFKLVATASRHGTVEGVNSYTTIEAMLD----AEPSIDAVSLCMPP-----QYRY 95 (330)
T ss_dssp EEEEECCSH-HHHHTHHHHHHHCT-TEEEEEEECSSCCCTTSEEESSHHHHHH----HCTTCCEEEECSCH-----HHHH
T ss_pred eEEEEecCH-HHHHHHHHHHHhCC-CeEEEEEEeCChhhcCCCccCCHHHHHh----CCCCCCEEEEeCCc-----HHHH
Confidence 789998765 343 4567776652 2232222222111110011222344465 6 899988865442 2222
Q ss_pred hhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 192 TTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 192 ~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
+-+.++++ ..++|++ .=-..+.++++++++. +++.|+.+
T Consensus 96 ---~~~~~al~--------aGkhVl~EKP~a~~~~e~~~l~~~-a~~~g~~~ 135 (330)
T 4ew6_A 96 ---EAAYKALV--------AGKHVFLEKPPGATLSEVADLEAL-ANKQGASL 135 (330)
T ss_dssp ---HHHHHHHH--------TTCEEEECSSSCSSHHHHHHHHHH-HHHHTCCE
T ss_pred ---HHHHHHHH--------cCCcEEEeCCCCCCHHHHHHHHHH-HHhcCCeE
Confidence 44445544 2477887 6567788999887763 45567765
No 111
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=45.95 E-value=1.2e+02 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=17.6
Q ss_pred ceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 213 MHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 213 ~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
+|++.-|||.+ |+.++. ..+++.|++.++.
T Consensus 272 k~v~lELGGk~-----------------p~IV~~-dADl~~Aa~~i~~ 301 (504)
T 3ek1_A 272 KRISLELGGNA-----------------PFIVFD-DADLDAAVDGAMV 301 (504)
T ss_dssp CEEEEECCCCE-----------------EEEECT-TSCHHHHHHHHHH
T ss_pred CCeEecCCCCC-----------------eeEEcC-CCCHHHHHHHHHH
Confidence 56666777643 445554 4466666666554
No 112
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=45.72 E-value=1.3e+02 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=11.8
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 277 p~iV~~-dADl~~Aa~~i~~ 295 (515)
T 2d4e_A 277 PALVFA-DADLERALDAVVF 295 (515)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eEEEcC-CCCHHHHHHHHHH
Confidence 445555 5577777776654
No 113
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=45.66 E-value=97 Score=29.23 Aligned_cols=20 Identities=0% Similarity=0.193 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhCCceeeE
Q 024560 22 GDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 22 ~~ii~~Ly~~f~~~D~~l~E 41 (266)
.+++.++.++..++--.+++
T Consensus 51 ~~~L~~~a~~l~~~~~ela~ 70 (484)
T 3ros_A 51 AEILHDIANALKEHEDELAK 70 (484)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 45556666666655444444
No 114
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=45.63 E-value=80 Score=28.88 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=47.4
Q ss_pred eeeccCC----CCHHHHHHHHHHHHhhhccCCCCCeEEEEec--c--c---ccchhHhhhhHHHHHHHHHHhhhhhh-cc
Q 024560 144 YAEYSGA----PNEEEVLQYARVVIDCATADPDGRKRALLIG--G--G---IANFTDVATTFNGIIRALREKESKLK-AA 211 (266)
Q Consensus 144 ~lDlgG~----a~~~~~~~al~~ll~~~~~d~~v~~vlvni~--g--g---i~~~~~vA~~~~gii~al~~~~~~~~-~~ 211 (266)
.+.+||+ ..++.|.++++.+- +..+.+-||+. . | ..+.+. . ..+++++++..+... ..
T Consensus 150 ~vniggn~~t~~~~~dy~~~~~~~~------~~ad~ielNisCPn~~G~~~l~~~~~-l---~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 150 GVNLGKNKTSVDAAEDYAEGVRVLG------PLADYLVVNVSSPNTAGLRSLQGKAE-L---RRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHG------GGCSEEEEECCCTTSTTGGGGGSHHH-H---HHHHHHHHHHHHTSCGGG
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHh------hhCCEEEEECCCCCCCCccccCCHHH-H---HHHHHHHHHHHhhccccC
Confidence 3567886 35778888888873 35789999962 1 1 112222 2 456666654321100 14
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhhhhcCCc
Q 024560 212 RMHIFVRRGGPNYQTGLAKMRALGEELGIP 241 (266)
Q Consensus 212 ~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip 241 (266)
++||+|++.-.-..+-..-+.+.++++|+.
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGad 249 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGID 249 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 699999877543222222222233366765
No 115
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=45.13 E-value=1.3e+02 Score=25.00 Aligned_cols=122 Identities=7% Similarity=-0.042 Sum_probs=67.2
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
.++|++++...+... ...+.+..+ |.++ ....+..+.+..+++++-+|+ ++|++++|+.
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--g~~~---~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~------- 194 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDK--GIFF---EELDVGTDPNQVQSRVKSYFK---IHPETNIIFC------- 194 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEE---EEEECCSCHHHHHHHHHHHHH---HCTTCCEEEE-------
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhc--CCeE---EEeecCCChHHHHHHHHHHHH---hCCCCCEEEE-------
Confidence 457888865444222 234666665 3332 233344556666666666554 2788888874
Q ss_pred chhHhhhhHHHHHHHHHHhhhhhhcc-cceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 186 NFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~~~~~~~-~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.++.+| .|+++++++.+... +. ++. |+-.++. ..+...+.+ |.+... ...++.+..+.+++++
T Consensus 195 ~~d~~A---~g~~~al~~~g~~v-P~~dv~-vig~D~~--~~~~~~i~~-----~~~ltt--v~~~~~~~g~~av~~l 258 (297)
T 3rot_A 195 LTSQAL---DPLGQMLLHPDRYD-FNYQPQ-VYSFDKT--PNTVSLIHK-----KLVNYV--MDQQPFLMGYLSITQL 258 (297)
T ss_dssp SSHHHH---HHHHHHHHSHHHHT-CCCCCE-EEEECCC--HHHHHHHHT-----TSCCEE--ECCCHHHHHHHHHHHH
T ss_pred cCCcch---HHHHHHHHhcCCcc-CCCceE-EEEeCCC--HHHHHHHHc-----CCceEE--EecChHHHHHHHHHHH
Confidence 257788 99999999875310 11 233 3344443 444445441 432221 1347777666666654
No 116
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=45.02 E-value=1.6e+02 Score=28.07 Aligned_cols=32 Identities=13% Similarity=0.390 Sum_probs=20.3
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 212 RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 212 ~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
-+|++.-|||.+ |+.++. ..+++.|++.++.-
T Consensus 282 lk~v~lELGGk~-----------------p~IV~~-dADl~~Aa~~i~~~ 313 (517)
T 2o2p_A 282 VKKVSLELGGKS-----------------PLIIFA-DCDLNKAVQMGMSS 313 (517)
T ss_dssp CCEEEEECCCCE-----------------EEEECT-TSCHHHHHHHHHHH
T ss_pred CCeEEEECCCcC-----------------eEEECC-CCCHHHHHHHHHHH
Confidence 366777777743 555665 55777777776653
No 117
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=45.02 E-value=15 Score=30.97 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeC---CCCHHHHHHHHHhhhhhcCCceeec
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRG---GPNYQTGLAKMRALGEELGIPLEVY 245 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~---G~~~~~~~~~L~~~~~~~Gip~~~~ 245 (266)
||+. -.-|..+-.=++|-+=| +-|++.+++++ ...+-|++ ||= .+..++|++.|. ++|.++.+.
T Consensus 81 ~~~~-~y~VTwy~SwSPC~~CA---~~va~FL~~~~----~v~L~If~aRLY~~~~~~~q~gLr~L~----~~G~~v~iM 148 (190)
T 3vow_A 81 SPNT-KYQVTWYTSWSPCPDCA---GEVAEFLARHS----NVNLTIFTARLYYFQYPCYQEGLRSLS----QEGVAVEIM 148 (190)
T ss_dssp CTTS-EEEEEEEEEECCCHHHH---HHHHHHHHHCT----TEEEEEEEEECTTTTSHHHHHHHHHHH----HHTCEEEEC
T ss_pred CCCc-eEEEEEEEeCCchHHHH---HHHHHHHHhCC----CeEEEEEEEecccccCchHHHHHHHHH----HCCCcEEEe
Confidence 4553 34566677778899989 99999999875 24677776 884 456789999999 669998766
Q ss_pred CCCCCHHHHHHHHH
Q 024560 246 GPEATMTGICKQAI 259 (266)
Q Consensus 246 ~~~~~~~eAv~~av 259 (266)
+ +.+.+..=+.+|
T Consensus 149 ~-~~eF~~CW~~FV 161 (190)
T 3vow_A 149 D-YEDFKYCWENFV 161 (190)
T ss_dssp C-HHHHHHHHHHHB
T ss_pred C-hHHHHHHHHHhc
Confidence 4 444444444443
No 118
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.27 E-value=1.6e+02 Score=25.64 Aligned_cols=102 Identities=9% Similarity=0.054 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHH
Q 024560 150 APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLA 229 (266)
Q Consensus 150 ~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~ 229 (266)
..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+... .++||++-.|.++.+++.+
T Consensus 19 ~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Lt~~E-r~~v~~~~~~~~~----grvpviaGvg~~~t~~ai~ 88 (292)
T 3daq_A 19 KVNLEALKAHVNFLLE-----NNAQAIIVNGTTAESPTLTTDE-KELILKTVIDLVD----KRVPVIAGTGTNDTEKSIQ 88 (292)
T ss_dssp EECHHHHHHHHHHHHH-----TTCCEEEESSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCEEEECCCSCHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-----cCCCEEEECccccccccCCHHH-HHHHHHHHHHHhC----CCCcEEEeCCcccHHHHHH
Confidence 5677888888888876 6899999983333222211111 1345555555431 4699999999999999988
Q ss_pred HHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 230 KMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 230 ~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 89 la~~a-~~~Gadavlv~~P~y~--~~~~~~l~~~f~~ia~a 126 (292)
T 3daq_A 89 ASIQA-KALGADAIMLITPYYN--KTNQRGLVKHFEAIADA 126 (292)
T ss_dssp HHHHH-HHHTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHh
Confidence 87743 345632 1222 24778888888777764
No 119
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=44.19 E-value=1.2e+02 Score=28.55 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=7.6
Q ss_pred cceEEEEeCCCC
Q 024560 212 RMHIFVRRGGPN 223 (266)
Q Consensus 212 ~~pvvvrl~G~~ 223 (266)
-+|++.=|||.+
T Consensus 251 ~k~v~lElGGk~ 262 (484)
T 3ifg_A 251 VKKLTLELGGNA 262 (484)
T ss_dssp TCEEEEECCCCC
T ss_pred CCceEEecCCCC
Confidence 366667777744
No 120
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=44.15 E-value=1.2e+02 Score=25.66 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhccc-ceEEEEeCCCCHHHH
Q 024560 149 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAAR-MHIFVRRGGPNYQTG 227 (266)
Q Consensus 149 G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~-~pvvvrl~G~~~~~~ 227 (266)
++.+.+.-+++++-+|+....+|++++|+ +.++.+| -|+++++++.+... +.+ +++|+-..+ ...+
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-------~~nd~~A---~g~~~al~~~g~~v-P~d~i~vv~g~D~--~~~~ 247 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVL-------SPYDGLS---IGIISSLKGVGYGT-KDQPLPVVSGQDA--EVPS 247 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEE-------CSSHHHH---HHHHHHHHHTTCSS-SSSCCCEECCSSC--CHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEE-------ECCCchH---HHHHHHHHHcCCCC-CCCceEEEEecCC--CHHH
Confidence 44556666677666665211137888877 2367888 99999999875210 001 334334443 3455
Q ss_pred HHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 228 LAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 228 ~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
...+.. |.+... ...++.+..+.+++++
T Consensus 248 ~~~i~~-----~~~ltt--v~~~~~~~g~~a~~~l 275 (330)
T 3uug_A 248 VKSIIA-----GEQYST--IFKDTRELAKVTVNMV 275 (330)
T ss_dssp HHHHHT-----TSSCCE--EECCHHHHHHHHHHHH
T ss_pred HHHHHc-----CCceEE--EecCHHHHHHHHHHHH
Confidence 555552 322211 1347777666666654
No 121
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=43.93 E-value=82 Score=27.65 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPE 248 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~ 248 (266)
++++++|+|-.|.. .+++-+++|++. .++|++ .=-..+.++++++++. ++++|+.+.+ +..
T Consensus 92 ~~~iDaV~IatP~~--------~H~~~a~~al~a--------GkhVl~EKPla~~~~ea~~l~~~-a~~~g~~l~v-g~~ 153 (393)
T 4fb5_A 92 DPEVDVVSVTTPNQ--------FHAEMAIAALEA--------GKHVWCEKPMAPAYADAERMLAT-AERSGKVAAL-GYN 153 (393)
T ss_dssp CTTCCEEEECSCGG--------GHHHHHHHHHHT--------TCEEEECSCSCSSHHHHHHHHHH-HHHSSSCEEE-CCG
T ss_pred CCCCcEEEECCChH--------HHHHHHHHHHhc--------CCeEEEccCCcccHHHHHHhhhh-HHhcCCcccc-ccc
Confidence 89999998876543 123545555542 477887 6666789999988874 4567876532 111
Q ss_pred CCHHHHHHHHHHHh
Q 024560 249 ATMTGICKQAIDCI 262 (266)
Q Consensus 249 ~~~~eAv~~av~~~ 262 (266)
.-...+++++.++.
T Consensus 154 ~R~~p~~~~~k~~i 167 (393)
T 4fb5_A 154 YIQNPVMRHIRKLV 167 (393)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred cccChHHHHHHHHH
Confidence 22334555555544
No 122
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.69 E-value=74 Score=26.51 Aligned_cols=76 Identities=17% Similarity=0.023 Sum_probs=46.2
Q ss_pred CCcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHH--HHhhhccCCCCCeEEEEeccc
Q 024560 112 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARV--VIDCATADPDGRKRALLIGGG 183 (266)
Q Consensus 112 ~G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~--ll~~~~~d~~v~~vlvni~gg 183 (266)
.++|++++.-.+.. --..+.+..+ |.++. .. -++.+.+.-+++++- +++ +.|++++||.
T Consensus 124 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~-~~--~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~----- 190 (285)
T 3c3k_A 124 KKRIALINHDLAYQYAQHRESGYLNRLKFH--GLDYS-RI--SYAENLDYMAGKLATFSLLK---SAVKPDAIFA----- 190 (285)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHH--TCCCC-EE--EECSSSSHHHHHHHHHHHHS---SSSCCSEEEE-----
T ss_pred CCeEEEEeCCCccccHHHHHHHHHHHHHHc--CCCce-Ee--ecCCChHHHHHHHHHHHHHc---CCCCCeEEEE-----
Confidence 36799987543321 1245667777 44433 22 233344455566665 554 2567888874
Q ss_pred ccchhHhhhhHHHHHHHHHHhh
Q 024560 184 IANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 184 i~~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| .|+++++++.+
T Consensus 191 --~~d~~A---~g~~~al~~~g 207 (285)
T 3c3k_A 191 --ISDVLA---AGAIQALTESG 207 (285)
T ss_dssp --SSHHHH---HHHHHHHHHTT
T ss_pred --CCHHHH---HHHHHHHHHcC
Confidence 257778 99999999874
No 123
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=43.20 E-value=1.7e+02 Score=25.51 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=65.4
Q ss_pred cCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHH
Q 024560 148 SGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTG 227 (266)
Q Consensus 148 gG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~ 227 (266)
.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.++++..+... .++||++-.|+++-+++
T Consensus 15 dg~iD~~~l~~lv~~li~-----~Gv~gl~~~GttGE~~~Ls~~E-r~~v~~~~~~~~~----gr~pviaGvg~~~t~~a 84 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIE-----EGSFGLVPCGTTGESPTLSKSE-HEQVVEITIKTAN----GRVPVIAGAGSNSTAEA 84 (292)
T ss_dssp TTEECHHHHHHHHHHHHH-----TTCSEEETTSGGGTGGGSCHHH-HHHHHHHHHHHHT----TSSCBEEECCCSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHH-----cCCCEEEECccccChhhCCHHH-HHHHHHHHHHHhC----CCCcEEEecCCccHHHH
Confidence 467888889999888886 5899988773222221111111 1345555554431 36899999999998888
Q ss_pred HHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 228 LAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 228 ~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
.+..+.. +++|.. -+++ -.+.++.++.+-.++.+
T Consensus 85 i~la~~A-~~~Gadavlv~~P~y~--~~s~~~l~~~f~~ia~a 124 (292)
T 2vc6_A 85 IAFVRHA-QNAGADGVLIVSPYYN--KPTQEGIYQHFKAIDAA 124 (292)
T ss_dssp HHHHHHH-HHTTCSEEEEECCCSS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCEEEEcCCCCC--CCCHHHHHHHHHHHHHh
Confidence 8877643 345632 1222 23778888888777654
No 124
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=43.06 E-value=1.7e+02 Score=25.56 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=55.0
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc-hhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN-FTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~-~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
+-+|+|-+.+++.+.++. . ..+.++|.+-..-+... .-.. ++-+++.+++.. .+-.+.++.||
T Consensus 159 eVi~LG~~vp~e~iv~aa----~----e~~~d~VglS~l~t~~~~~~~~---~~~~i~~L~~~g-----~~~~i~vivGG 222 (262)
T 1xrs_B 159 DAYNLGSQVANEDFIKKA----V----ELEADVLLVSQTVTQKNVHIQN---MTHLIELLEAEG-----LRDRFVLLCGG 222 (262)
T ss_dssp EEEECCSSBCHHHHHHHH----H----HTTCSEEEEECCCCTTSHHHHH---HHHHHHHHHHTT-----CGGGSEEEEEC
T ss_pred EEEECCCCCCHHHHHHHH----H----HcCCCEEEEEeecCCccchHHH---HHHHHHHHHhcC-----CCCCCEEEEEC
Confidence 347899999999887772 2 34566677653221100 2222 255677777653 11113446677
Q ss_pred CCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 222 PNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 222 ~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.... .+... +.|... +|++.+...+.++..++..
T Consensus 223 ~~~~--~~~a~----~iGad~-~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 223 PRIN--NEIAK----ELGYDA-GFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp TTCC--HHHHH----TTTCSE-EECTTCCHHHHHHHHHHHH
T ss_pred CcCC--HHHHH----HcCCeE-EECCchHHHHHHHHHHHHH
Confidence 6543 34455 568654 4555667777777766643
No 125
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=42.25 E-value=62 Score=28.87 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 219 RGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 219 l~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
..|...++|.++|++.+++.|+|+.
T Consensus 68 f~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 68 FRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCEE
T ss_pred cCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 4455578999999999999999963
No 126
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=42.10 E-value=70 Score=31.80 Aligned_cols=112 Identities=11% Similarity=0.050 Sum_probs=69.3
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEe---cccccchh
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLI---GGGIANFT 188 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni---~ggi~~~~ 188 (266)
+.+++++....-.--......... |. ..+-+.+.+..+.+.+-.... .+| |++-. .||.|.|+
T Consensus 552 ~S~L~Ll~~~~~~~~~l~~~~~~~--gi-~~~r~~f~~~~~~~~~l~~~~----------~~D-i~LDt~p~~g~tT~~e 617 (723)
T 4gyw_A 552 NSVLWLLRFPAVGEPNIQQYAQNM--GL-PQNRIIFSPVAPKEEHVRRGQ----------LAD-VCLDTPLCNGHTTGMD 617 (723)
T ss_dssp SEEEEEEETTGGGHHHHHHHHHHT--TC-CGGGEEEEECCCHHHHHHHGG----------GCS-EEECCSSSCCSHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHhc--CC-CcCeEEECCCCCHHHHHHHhC----------CCe-EEeCCCCcCCHHHHHH
Confidence 456777766543333334444455 34 346677777777665444311 233 45552 25555554
Q ss_pred HhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC-CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 189 DVATTFNGIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 189 ~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~-~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
.+. ..+|||++-|.+ ...-+-.+|+ ..|++=-+ ..|.+|=|+.|++++.
T Consensus 618 al~-------------------~GvPvvt~~g~~~~sR~~~s~l~----~~gl~e~i---a~~~~~Y~~~a~~la~ 667 (723)
T 4gyw_A 618 VLW-------------------AGTPMVTMPGETLASRVAASQLT----CLGCLELI---AKNRQEYEDIAVKLGT 667 (723)
T ss_dssp HHH-------------------TTCCEEBCCCSSGGGTHHHHHHH----HHTCGGGB---CSSHHHHHHHHHHHHH
T ss_pred HHH-------------------cCCCEEEccCCCccHhHHHHHHH----HcCCcccc---cCCHHHHHHHHHHHhc
Confidence 444 479999987766 3346778888 66998433 5699999999999985
No 127
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.95 E-value=1.3e+02 Score=25.89 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=67.8
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeecc-CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYS-GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlg-G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
..+|++++.-.+... -..+.+..+ |-. ..+. ++.+.+.-+++++-+|+ ..| +++||.
T Consensus 174 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~----~~~~~~~~~~~~~~~~~~~ll~---~~~-~~ai~~------ 237 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIY--GAE----VTFHFGHYSVESGEEMAQVVFN---NGL-PDALIV------ 237 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCE----EEEEECCSSHHHHHHHHHHHHH---TCC-CSEEEE------
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHC--CCC----EEEecCCCCHHHHHHHHHHHhc---CCC-CcEEEE------
Confidence 367999976544321 235666666 332 3333 66777877788777776 255 888884
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
.+|.+| -|+++++++.+ .++| -|+-..+... + +.+. -++.+. ..++++..+.++++
T Consensus 238 -~nd~~A---~g~~~al~~~G-----~~vP~disvig~D~~~~--~-~~~~-----p~lttv----~~~~~~~g~~Av~~ 296 (333)
T 3jvd_A 238 -ASPRLM---AGVMRAFTRLN-----VRVPHDVVIGGYDDPEW--Y-SFVG-----AGITTF----VPPHEEMGKEAVRL 296 (333)
T ss_dssp -CCHHHH---HHHHHHHHHTT-----CCTTTTCEEEEESCCGG--G-GGST-----TSCEEE----ECCHHHHHHHHHHH
T ss_pred -CCHHHH---HHHHHHHHHcC-----CCCCCceEEEEECChHH--H-HhcC-----CCceEE----ecCHHHHHHHHHHH
Confidence 367888 99999999885 3333 3345555431 1 1111 134321 34777777777765
Q ss_pred h
Q 024560 262 I 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 297 L 297 (333)
T 3jvd_A 297 L 297 (333)
T ss_dssp H
T ss_pred H
Confidence 4
No 128
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=40.92 E-value=1.7e+02 Score=27.18 Aligned_cols=20 Identities=0% Similarity=-0.031 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhCCceeeE
Q 024560 22 GDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 22 ~~ii~~Ly~~f~~~D~~l~E 41 (266)
.+++.++.++..++--.+++
T Consensus 54 ~~~L~~~a~~l~~~~~ela~ 73 (462)
T 3etf_A 54 AQTLRDIGQALRAHAEEMAQ 73 (462)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666665555433443
No 129
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=40.76 E-value=1.7e+02 Score=24.86 Aligned_cols=120 Identities=12% Similarity=0.015 Sum_probs=66.2
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCCceee-ccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lD-lgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
.++|+++..-.+... -..+.+... +... ..+. .-++-+.+.-+++++-+|+ ++|++++|+.
T Consensus 128 ~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~aI~~------ 195 (316)
T 1tjy_A 128 KAKVAFFYSSPTVTDQNQWVKEAKAKISQE--HPGW-EIVTTQFGYNDATKSLQTAEGIIK---AYPDLDAIIA------ 195 (316)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHH--CTTE-EEEEEEECTTCHHHHHHHHHHHHH---HCSSCCEEEE------
T ss_pred CCEEEEEEcCCCChhHHHHHHHHHHHHHhh--CCCc-EEEEeccCCCCHHHHHHHHHHHHH---hCCCCCEEEE------
Confidence 467998864332211 234556554 2111 1111 2245566766666666665 2678888874
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcC-CceeecCCCCCHHHHHHHHHHHh
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELG-IPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~G-ip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.++.+| .|+++++++.+ . .+++| +-.. +..+..+.+.. | +...+. -++.+..+.+++++
T Consensus 196 -~nD~~A---~g~~~al~~~G-~---~dv~V-vG~D--~~~~~~~~i~~-----g~l~ttv~---~~~~~~g~~a~~~l 255 (316)
T 1tjy_A 196 -PDANAL---PAAAQAAENLK-R---NNLAI-VGFS--TPNVMRPYVQR-----GTVKEFGL---WDVVQQGKISVYVA 255 (316)
T ss_dssp -CSTTHH---HHHHHHHHHTT-C---CSCEE-EEBC--CHHHHHHHHHH-----TSCSEEEE---CCHHHHHHHHHHHH
T ss_pred -CCCccH---HHHHHHHHHcC-C---CCEEE-EEeC--CCHHHHHHHHC-----CCccEEEe---cCHHHHHHHHHHHH
Confidence 256778 99999999874 2 23443 3333 34455566652 5 533332 37777666666654
No 130
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.59 E-value=84 Score=26.26 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=49.7
Q ss_pred CcEEEEecCchHH-----HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccch
Q 024560 113 GRIWTMVAGGGAS-----VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANF 187 (266)
Q Consensus 113 G~Igii~NGaGla-----m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~ 187 (266)
.+|++++...+.. --..+.+..+ |.. -...-+-++.+.+.-+++++-+|+ ..|++++||. .+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~~ 193 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRH--GLS-ASATVVTGGTTETEGAEGMHTLLE---MPTPPTAVVA-------FN 193 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHT--TCG-GGEEEECCCSSHHHHHHHHHHHHT---SSSCCSEEEE-------SS
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHC--CCC-CCccEEECCCCHHHHHHHHHHHHc---CCCCCCEEEE-------CC
Confidence 5688886544331 1234566666 333 222234466777777777777765 3678888874 36
Q ss_pred hHhhhhHHHHHHHHHHhh
Q 024560 188 TDVATTFNGIIRALREKE 205 (266)
Q Consensus 188 ~~vA~~~~gii~al~~~~ 205 (266)
+.+| -|+++++++.+
T Consensus 194 d~~A---~g~~~al~~~g 208 (289)
T 3k9c_A 194 DRCA---TGVLDLLVRSG 208 (289)
T ss_dssp HHHH---HHHHHHHHHTT
T ss_pred hHHH---HHHHHHHHHcC
Confidence 7788 99999999875
No 131
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=40.43 E-value=1.3e+02 Score=28.28 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=10.2
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 260 p~iV~~-dADl~~Aa~~i~~ 278 (481)
T 3jz4_A 260 PFIVFD-DADLDKAVEGALA 278 (481)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eEEEcC-CCCHHHHHHHHHH
Confidence 444444 4466666665554
No 132
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=40.12 E-value=77 Score=26.77 Aligned_cols=42 Identities=12% Similarity=-0.056 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCeEEEEec-ccccchhHhhhhHHHHHHHH
Q 024560 152 NEEEVLQYARVVIDCATADPDGRKRALLIG-GGIANFTDVATTFNGIIRAL 201 (266)
Q Consensus 152 ~~~~~~~al~~ll~~~~~d~~v~~vlvni~-ggi~~~~~vA~~~~gii~al 201 (266)
..+.+.+++..+++ ++...++ .|+. +...+..+++ +.+.+++
T Consensus 194 hv~Dva~a~~~~~~----~~~~~g~-yn~~~~~~~t~~e~~---~~ia~~l 236 (298)
T 4b4o_A 194 HIGDLAGILTHALE----ANHVHGV-LNGVAPSSATNAEFA---QTFGAAL 236 (298)
T ss_dssp EHHHHHHHHHHHHH----CTTCCEE-EEESCSCCCBHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHh----CCCCCCe-EEEECCCccCHHHHH---HHHHHHh
Confidence 45778888888887 7888885 4653 3445566666 6665554
No 133
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=39.90 E-value=1.6e+02 Score=28.47 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=17.3
Q ss_pred eEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 214 HIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 214 pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
|++.=+||.+ |+.++. ..+++.|++.++.
T Consensus 310 rv~lElGGk~-----------------p~IV~~-dADld~Aa~~iv~ 338 (563)
T 4e3x_A 310 RLAGECGGKN-----------------FHFVHS-SADVDSVVSGTLR 338 (563)
T ss_dssp EEEEECCCCE-----------------EEEECT-TSCHHHHHHHHHH
T ss_pred ceeccCCCCC-----------------ceeeCC-CCCHHHHHHHHHH
Confidence 4777788754 444444 4466666666554
No 134
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=39.59 E-value=1.6e+02 Score=27.48 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=10.5
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 259 p~iV~~-dADl~~Aa~~i~~ 277 (485)
T 4dng_A 259 PFAVLS-DADVDRAVDAAIF 277 (485)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred ceEEcC-CCCHHHHHHHHHH
Confidence 444554 4466666665554
No 135
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=39.46 E-value=40 Score=28.92 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCCCeEEEE--ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEe---CCCCHHHHHHHHH
Q 024560 171 PDGRKRALL--IGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRR---GGPNYQTGLAKMR 232 (266)
Q Consensus 171 ~~v~~vlvn--i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl---~G~~~~~~~~~L~ 232 (266)
+++++|++- .|||-... +..|.+.++. .++||++.. +|.-...|--++-
T Consensus 37 ~~~~~Ivl~inspGG~v~~------~~~i~~~i~~-------~~~PVia~v~p~~G~AasaG~~ia~ 90 (230)
T 3viv_A 37 DNAEAIIIELDTPGGRADA------MMNIVQRIQQ-------SKIPVIIYVYPPGASAASAGTYIAL 90 (230)
T ss_dssp TTCSEEEEEEEBSCEEHHH------HHHHHHHHHT-------CSSCEEEEECSTTCEEETHHHHHHH
T ss_pred CCCCEEEEEEeCCCcCHHH------HHHHHHHHHh-------CCCCEEEEEecCCCEEhHHHHHHHH
Confidence 468887774 58875322 2556666654 479999999 8877777766665
No 136
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=39.09 E-value=1.9e+02 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=19.4
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 212 RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 212 ~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
-+|++.=|||.+ |+.++. ..+++.|++.++.
T Consensus 263 l~~v~lELGGk~-----------------p~iV~~-dADl~~Aa~~i~~ 293 (501)
T 1bxs_A 263 LKRVSLELGGKS-----------------PCIVFA-DADLDNAVEFAHQ 293 (501)
T ss_dssp CCEEEEECCCCC-----------------EEEECT-TSCHHHHHHHHHH
T ss_pred CCcEEEecCCcC-----------------eEEECC-CCCHHHHHHHHHH
Confidence 366777777743 455555 5577777776654
No 137
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=38.72 E-value=2.1e+02 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=19.4
Q ss_pred cceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 212 RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 212 ~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
-+|+..=|||.| |..+++ ..+++.|++.++.
T Consensus 273 l~~v~lELGGk~-----------------p~IV~~-dADl~~Aa~~i~~ 303 (520)
T 3ed6_A 273 VTNIALELGGKN-----------------PNIIFD-DADFELAVDQALN 303 (520)
T ss_dssp TCEEEEECCCCC-----------------EEEECT-TSCHHHHHHHHHH
T ss_pred CCCEEEEcCCCC-----------------eeEECC-CCCHHHHHHHHHH
Confidence 366777777743 555555 4567777766654
No 138
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=38.58 E-value=1.1e+02 Score=26.44 Aligned_cols=118 Identities=11% Similarity=0.016 Sum_probs=68.5
Q ss_pred CcEEEEecCchHH-------HHHHHHHHhcCCCCCCCc-eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 113 GRIWTMVAGGGAS-------VIYADTVGDLGYASELGN-YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 113 G~Igii~NGaGla-------m~t~D~l~~~g~gg~pAN-~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
.+|++++...+.. -...+.+..+ |..+.. ..-..++.+.+.-+++++-+|+ +.|.+++||.
T Consensus 188 r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------ 256 (355)
T 3e3m_A 188 RKIVFLGEKDDDWTRGAARRAGFKRAMREA--GLNPDQEIRLGAPPLSIEDGVAAAELILQ---EYPDTDCIFC------ 256 (355)
T ss_dssp CSEEEEEESSCTTSHHHHHHHHHHHHHHHT--TSCSCCEEEESCSSCCHHHHHHHHHHHHH---HCTTCCEEEE------
T ss_pred CeEEEEccCcccChhHHHHHHHHHHHHHHC--CcCCCccEEEecCCCCHHHHHHHHHHHHc---CCCCCcEEEE------
Confidence 5799997643321 2255677777 344332 2233455667777777777665 2678888874
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccce--E-EEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMH--I-FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~p--v-vvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
.+|.+| -|+++++++.+ .++| | |+-..+. ..+. .+. -.+.+. ..++++..+.|+++
T Consensus 257 -~nD~~A---~g~~~al~~~G-----~~vP~disvigfD~~--~~~~-~~~-----p~lttv----~~~~~~~g~~A~~~ 315 (355)
T 3e3m_A 257 -VSDMPA---FGLLSRLKSIG-----VAVPEQVSVVGFGNF--EVSR-FAS-----PEISTV----RVDPIAIGRETGSL 315 (355)
T ss_dssp -SSHHHH---HHHHHHHHHHT-----CCTTTTCEEECSSCC--HHHH-HSS-----SCCBEE----ECCHHHHHHHHHHH
T ss_pred -CChHHH---HHHHHHHHHcC-----CCCCCceEEEEECCh--HHHh-ccC-----CCceEE----ecCHHHHHHHHHHH
Confidence 367888 99999999875 3344 2 3344443 2221 111 134332 34777777777765
Q ss_pred h
Q 024560 262 I 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 316 l 316 (355)
T 3e3m_A 316 I 316 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=38.39 E-value=96 Score=31.28 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|.-++ ..++... |-+ -+|+|.+.+++.+.++. . ..++++|.+-. -.+...+.. ..+++.++
T Consensus 612 G~~iV-a~~l~~~--Gfe---Vi~lG~~v~~eeiv~aA---~-----e~~adiVglSs--l~~~~~~~~---~~vi~~L~ 672 (727)
T 1req_A 612 GQKVI-ATAYADL--GFD---VDVGPLFQTPEETARQA---V-----EADVHVVGVSS--LAGGHLTLV---PALRKELD 672 (727)
T ss_dssp HHHHH-HHHHHHH--TCE---EEECCTTBCHHHHHHHH---H-----HTTCSEEEEEE--CSSCHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHhC--CeE---EEeCCCCCCHHHHHHHH---H-----HcCCCEEEEee--ecHhHHHHH---HHHHHHHH
Confidence 44443 4556565 343 47788889999877662 3 34566666553 222333334 77888888
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 203 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+... .+++ +..||.-..+-.+.+. +.|+.-+ |++-++..++++..++...
T Consensus 673 ~~G~----~~i~--VivGG~~p~~d~~~l~----~~GaD~~-f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 673 KLGR----PDIL--ITVGGVIPEQDFDELR----KDGAVEI-YTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HTTC----TTSE--EEEEESCCGGGHHHHH----HTTEEEE-ECTTCCHHHHHHHHHHHHH
T ss_pred hcCC----CCCE--EEEcCCCccccHHHHH----hCCCCEE-EcCCccHHHHHHHHHHHHH
Confidence 7641 2344 4556632222234456 5688754 4456788888888877653
No 140
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=38.36 E-value=1.4e+02 Score=28.29 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhCCceeeE
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~E 41 (266)
+=.+++.++.++..++--.|++
T Consensus 73 ~R~~~L~~~a~~l~~~~~ela~ 94 (503)
T 3iwj_A 73 VRARYLRAIAAKVTEKKPELAK 94 (503)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666665444443
No 141
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=38.32 E-value=1.7e+02 Score=30.52 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEA 249 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~ 249 (266)
+|.++.|. |+| ++.+. +.|.++..+.. ++-+|++.=+||.| |+.++. ..
T Consensus 725 ~p~Vd~V~---FTG---St~vG---r~I~~~aA~~~----~~l~pv~lElGGkn-----------------p~IV~~-dA 773 (1001)
T 3haz_A 725 HPDIAGVV---FTG---STEVA---RSINRALAAKD----GPIVPLIAETGGIN-----------------AMIADA-TA 773 (1001)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHHHHSS----SCCCCEEEECCCCE-----------------EEEECT-TS
T ss_pred CCCcCEEE---ecC---CHHHH---HHHHHHHhccc----CCCceEEeecCCcc-----------------eEEEcC-CC
Confidence 77777554 333 34444 66666554431 12467777888844 445554 45
Q ss_pred CHHHHHHHHHH
Q 024560 250 TMTGICKQAID 260 (266)
Q Consensus 250 ~~~eAv~~av~ 260 (266)
+++.||+.++.
T Consensus 774 Dld~Aa~~iv~ 784 (1001)
T 3haz_A 774 LPEQVADDVVT 784 (1001)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67777766654
No 142
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=38.13 E-value=1.6e+02 Score=27.89 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=12.4
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 274 p~iV~~-dADl~~Aa~~i~~ 292 (500)
T 1o04_A 274 PNIIMS-DADMDWAVEQAHF 292 (500)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eEEECC-CCCHHHHHHHHHH
Confidence 555555 5577777777665
No 143
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=37.82 E-value=88 Score=26.03 Aligned_cols=117 Identities=10% Similarity=-0.026 Sum_probs=65.5
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++.-.+.. -...+.+..+ |.+.....-+.++.+.+.-+++++-+++ .|++++|+. .
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~ai~~-------~ 192 (290)
T 3clk_A 126 RQIGIAGIDQYPYTGRKRLAGYKKALKEA--NIAINQEWIKPGDYSYTSGEQAMKAFGK----NTDLTGIIA-------A 192 (290)
T ss_dssp CSEEEESCCCCTTTHHHHHHHHHHHHHHT--TCCCCGGGEECCCSSHHHHHHHHHHHCT----TCCCSEEEE-------S
T ss_pred CEEEEEeCCCCCcchHHHHHHHHHHHHHc--CCCCCcceEEcCCCChhhHHHHHHHHhc----cCCCcEEEE-------C
Confidence 5788886432211 1235666666 4443221123455566766677666664 577888874 2
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-..+... + +.+. -.+.+ + ..++.+..+.++++.
T Consensus 193 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~~-----p~ltt-v---~~~~~~~g~~av~~l 251 (290)
T 3clk_A 193 SDMTA---IGILNQASSFG-----IEVPKDLSIVSIDGTEM--C-KITR-----PQLTS-I---SQDFFQMGVTGVQQI 251 (290)
T ss_dssp SHHHH---HHHHHHHHHTT-----CCTTTTCEEEEEECCTH--H-HHSS-----SCCEE-E---ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEeCChHH--H-hhcC-----CCceE-E---ecCHHHHHHHHHHHH
Confidence 57778 99999999874 2333 3345555542 2 2222 13432 2 336777777776654
No 144
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=37.70 E-value=1.9e+02 Score=24.67 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=48.4
Q ss_pred eEecCCCcEEEEecC-chHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 107 TVLNPKGRIWTMVAG-GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 107 ~~v~l~G~Igii~NG-aGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
+|-+|.|++++|+.| .|++..+.-.+... |.+.. - -+-+.++..+..+-+-+ .+.++..+ ..=++
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv---~--~~~~~~~~~~~~~~i~~-----~g~~~~~~--~~Dvt 66 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALN--DSIVV---A--VELLEDRLNQIVQELRG-----MGKEVLGV--KADVS 66 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHT--TCEEE---E--EESCHHHHHHHHHHHHH-----TTCCEEEE--ECCTT
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEE---E--EECCHHHHHHHHHHHHh-----cCCcEEEE--EccCC
Confidence 366789999999766 58888888888887 45432 1 12345666666555533 34444433 34555
Q ss_pred chhHhhhhHHHHHHHHHHh
Q 024560 186 NFTDVATTFNGIIRALREK 204 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~ 204 (266)
+.+++. +.+-++.+++
T Consensus 67 ~~~~v~---~~~~~~~~~~ 82 (254)
T 4fn4_A 67 KKKDVE---EFVRRTFETY 82 (254)
T ss_dssp SHHHHH---HHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHc
Confidence 666655 4444444444
No 145
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=37.56 E-value=52 Score=30.26 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCCeEEEEe-cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEE-EEeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 171 PDGRKRALLI-GGGIANFTDVATTFNGIIRALREKESKLKAARMHIF-VRRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 171 ~~v~~vlvni-~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv-vrl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
+++--.|+-| |......+...+.++.+++.++...+ --+.= ||+.|..+...++.-. +.|||+
T Consensus 280 ~~~g~~~iaIdP~~f~~~~~f~~~~~~~~~~l~~~~~-----~~g~~~v~~PGe~e~~~~~~~~----~~GI~l 344 (365)
T 3i0p_A 280 FSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTDK-----LPGHDRIYTAGEKEYETEQKRR----KFGDDL 344 (365)
T ss_dssp CCEEEEEEEEEGGGTSCHHHHHHHHHHHHHHHHTSCC-----CTTCCCCCCTTHHHHHHHHHHH----HHCEEE
T ss_pred CcceEEEEEEChHHcCCHHHHHHHHHHHHHHHhcCCC-----CCCCCceeCCChHHHHHHHHHH----ccCccc
Confidence 3443333334 65555544444334666666665421 01111 5788865554444433 459998
No 146
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=37.31 E-value=1.8e+02 Score=26.78 Aligned_cols=49 Identities=29% Similarity=0.404 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCCCHHH---------HHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 024560 195 NGIIRALREKESKLKAARMHIFVRRGGPNYQT---------GLAKMRALGEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 195 ~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~---------~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
.++++.+++. .+|++ |++.+. .+++|+ ++|||+--|..+++.+++.+.+
T Consensus 97 ~~~~~~l~~~-------Gi~~~----Gp~~~a~~~~~dK~~~k~~l~----~~GIp~p~~~~~~~~~ea~~~~ 154 (442)
T 3lp8_A 97 NGLSDALTEE-------GILVF----GPSKAAARLESSKGFTKELCM----RYGIPTAKYGYFVDTNSAYKFI 154 (442)
T ss_dssp TTHHHHHHHT-------TCEEE----SCCHHHHHHHHCHHHHHHHHH----HHTCCBCCEEEESSHHHHHHHH
T ss_pred HHHHHHHHhc-------CCcEe----cCCHHHHHHhhCHHHHHHHHH----HCCCCCCCEEEECCHHHHHHHH
Confidence 5666766654 46655 334333 344555 6799874333456777766543
No 147
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=37.28 E-value=1.6e+02 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=20.7
Q ss_pred cCCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCC
Q 024560 110 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPN 152 (266)
Q Consensus 110 ~l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~ 152 (266)
.+-|=+++|+----+.++++..+..+ -..+|.+-+-....
T Consensus 147 ~P~GVv~~I~PwN~P~~~~~~~~~~A---LaaGN~VVlKps~~ 186 (508)
T 3r64_A 147 VAKGVVGVISPWNFPLNLSIRSVAPA---LAVGNAVVIKPASD 186 (508)
T ss_dssp EECSEEEEECCSSSHHHHHHHHHHHH---HHTTCEEEEECCTT
T ss_pred ecceEEEEECCCcchHHHHHHHHHHH---HhcCCEEEEECCCC
Confidence 35677888865555555555443332 22345555544443
No 148
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=37.05 E-value=1.9e+02 Score=24.94 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=48.1
Q ss_pred CCcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 112 KGRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 112 ~G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
..+|++++.-.+.. --..+.+..+ |-++. .. ..++.+.+.-+++++-+|+ ..|.+++||.
T Consensus 179 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--gi~~~-~~-~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~------- 244 (349)
T 1jye_A 179 HQQIALLAGPLSSVSARLRLAGWHKYLTRN--QIQPI-AE-REGDWSAMSGFQQTMQMLN---EGIVPTAMLV------- 244 (349)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHT--TCCCS-EE-EECCSSHHHHHHHHHHHHH---TTCCCSEEEE-------
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHc--CCCcc-cc-ccCCCChHHHHHHHHHHHh---CCCCCCEEEE-------
Confidence 36799997543321 1245677776 44432 22 3455566665666665554 2577888874
Q ss_pred chhHhhhhHHHHHHHHHHhh
Q 024560 186 NFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~ 205 (266)
.+|.+| -|+++++++.+
T Consensus 245 ~nD~~A---~g~~~al~~~G 261 (349)
T 1jye_A 245 ANDQMA---LGAMRAITESG 261 (349)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CChHHH---HHHHHHHHHcC
Confidence 267788 99999999874
No 149
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=36.92 E-value=1.8e+02 Score=25.13 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=44.8
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCC-eEEEEeccccc--------chhHhhhhHHHHHHHHHHhhhhhhcccceEE
Q 024560 146 EYSGAPNEEEVLQYARVVIDCATADPDGR-KRALLIGGGIA--------NFTDVATTFNGIIRALREKESKLKAARMHIF 216 (266)
Q Consensus 146 DlgG~a~~~~~~~al~~ll~~~~~d~~v~-~vlvni~ggi~--------~~~~vA~~~~gii~al~~~~~~~~~~~~pvv 216 (266)
.++| .+.+.+.++++.+.+ -..+ +|-+|+..-.+ +.+. . .-+++++++. .++||+
T Consensus 99 ~i~g-~~~~~~~~~a~~~~~-----~g~d~~iein~~~P~~~g~~~~g~~~e~-~---~~iv~~vr~~------~~~Pv~ 162 (311)
T 1jub_A 99 SIAG-MSAAENIAMLKKIQE-----SDFSGITELNLSCPNVPGEPQLAYDFEA-T---EKLLKEVFTF------FTKPLG 162 (311)
T ss_dssp EECC-SSHHHHHHHHHHHHH-----SCCCSEEEEESCCCCSSSCCCGGGCHHH-H---HHHHHHHTTT------CCSCEE
T ss_pred EcCC-CCHHHHHHHHHHHHh-----cCCCeEEEEeccCCCCCCcccccCCHHH-H---HHHHHHHHHh------cCCCEE
Confidence 3444 567889999998875 4678 88898631111 1221 1 3445555443 368999
Q ss_pred EEeCCC-CHHHHHHHHHhhhhhcCCc
Q 024560 217 VRRGGP-NYQTGLAKMRALGEELGIP 241 (266)
Q Consensus 217 vrl~G~-~~~~~~~~L~~~~~~~Gip 241 (266)
+++... ..++..++.+ .++++|+.
T Consensus 163 vKi~~~~~~~~~~~~a~-~~~~~G~d 187 (311)
T 1jub_A 163 VKLPPYFDLVHFDIMAE-ILNQFPLT 187 (311)
T ss_dssp EEECCCCSHHHHHHHHH-HHTTSCCC
T ss_pred EEECCCCCHHHHHHHHH-HHHHcCCc
Confidence 988765 3333322222 23356775
No 150
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=36.89 E-value=1.6e+02 Score=27.51 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhCCceeeE
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~E 41 (266)
+=.+++.++.++..++--.|++
T Consensus 67 ~R~~~L~~~a~~l~~~~~ela~ 88 (479)
T 2imp_A 67 ERASWLRKISAGIRERASEISA 88 (479)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777665544444
No 151
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=36.48 E-value=1.1e+02 Score=26.79 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=20.8
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 219 RGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 219 l~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
..|...++|.++|.+.+++.|+|+.
T Consensus 55 f~G~g~~~GL~~l~~~~~e~Glp~~ 79 (267)
T 2nwr_A 55 FRGHGLEYGVKALRKVKEEFGLKIT 79 (267)
T ss_dssp CCCSCHHHHHHHHHHHHHHHCCEEE
T ss_pred CcCccHHHHHHHHHHHHHhcCCeEE
Confidence 4455589999999999999999963
No 152
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=36.26 E-value=2.7e+02 Score=25.94 Aligned_cols=128 Identities=9% Similarity=-0.025 Sum_probs=65.8
Q ss_pred cEEEEecC---chHHHHHHHHHHhc-CCCCCCCceeeccCCCCHHHHHHHH--------------HHHHhhhccCCCCCe
Q 024560 114 RIWTMVAG---GGASVIYADTVGDL-GYASELGNYAEYSGAPNEEEVLQYA--------------RVVIDCATADPDGRK 175 (266)
Q Consensus 114 ~Igii~NG---aGlam~t~D~l~~~-g~gg~pAN~lDlgG~a~~~~~~~al--------------~~ll~~~~~d~~v~~ 175 (266)
+||+|+.| |..+...+..|... . +.+..-.+ +.++++..++. +-+++ ++++++
T Consensus 41 rvgiIG~g~~GG~~g~~h~~~l~~~~~-~~~lvav~----d~~~~~a~~~a~~~g~~~~~~~~d~~ell~----~~~vD~ 111 (479)
T 2nvw_A 41 RVGFVGLTSGKSWVAKTHFLAIQQLSS-QFQIVALY----NPTLKSSLQTIEQLQLKHATGFDSLESFAQ----YKDIDM 111 (479)
T ss_dssp EEEEECCCSTTSHHHHTHHHHHHHTTT-TEEEEEEE----CSCHHHHHHHHHHTTCTTCEEESCHHHHHH----CTTCSE
T ss_pred EEEEEcccCCCCHHHHHHHHHHHhcCC-CeEEEEEE----eCCHHHHHHHHHHcCCCcceeeCCHHHHhc----CCCCCE
Confidence 69999884 44555556666654 1 22221112 23444433222 23344 889999
Q ss_pred EEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcC-CceeecCCCCCHHH
Q 024560 176 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELG-IPLEVYGPEATMTG 253 (266)
Q Consensus 176 vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~G-ip~~~~~~~~~~~e 253 (266)
|+|-.|.. .-+ +-+..+++.-.+. ...++|++ .=-..+.++++++.+. +++.| +.+.+- ...-...
T Consensus 112 V~I~tp~~-----~H~---~~~~~al~aG~~~--~~~khVl~EKPla~~~~ea~~l~~~-a~~~g~~~~~v~-~~~R~~p 179 (479)
T 2nvw_A 112 IVVSVKVP-----EHY---EVVKNILEHSSQN--LNLRYLYVEWALAASVQQAEELYSI-SQQRANLQTIIC-LQGRKSP 179 (479)
T ss_dssp EEECSCHH-----HHH---HHHHHHHHHSSSC--SSCCEEEEESSSSSSHHHHHHHHHH-HHTCTTCEEEEE-CGGGGCH
T ss_pred EEEcCCcH-----HHH---HHHHHHHHCCCCc--CCceeEEEeCCCcCCHHHHHHHHHH-HHHcCCeEEEEE-eccccCH
Confidence 98875532 222 5555555432000 00167887 5445678899888764 45568 664321 1122334
Q ss_pred HHHHHHHHh
Q 024560 254 ICKQAIDCI 262 (266)
Q Consensus 254 Av~~av~~~ 262 (266)
+++++.++.
T Consensus 180 ~~~~~k~~i 188 (479)
T 2nvw_A 180 YIVRAKELI 188 (479)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 153
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=36.08 E-value=1.1e+02 Score=22.54 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=41.3
Q ss_pred CCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhc-ccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCC
Q 024560 171 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKA-ARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEA 249 (266)
Q Consensus 171 ~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~-~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~ 249 (266)
...+.++++ +++..-.|-.. ...++...++.. . ...+++ +.|.+ ..-+++|+ .+|+.- .|..+.
T Consensus 46 ~~~~~vvlD-ls~v~~iDSsG--l~~L~~~~~~~~----~~~g~~l~--l~~~~-~~v~~~l~----~~gl~~-~~~i~~ 110 (121)
T 3t6o_A 46 AQPRKVLID-LEGVEFFGSSF--IELLVRGWKRIK----EDQQGVFA--LCSVS-PYCVEVLQ----VTHIDE-VWPRYS 110 (121)
T ss_dssp SSSCEEEEE-CTTCCEECHHH--HHHHHHHHHHHT----TSTTCEEE--EESCC-HHHHHHHT----TCSGGG-GSCEES
T ss_pred cCCCeEEEE-CCCCCEEcHHH--HHHHHHHHHHHH----HhcCCEEE--EEeCC-HHHHHHHH----HhCccc-eecccC
Confidence 445666666 56666666544 245555555443 2 234443 44544 56678888 557642 233467
Q ss_pred CHHHHHHHH
Q 024560 250 TMTGICKQA 258 (266)
Q Consensus 250 ~~~eAv~~a 258 (266)
+.++|+..+
T Consensus 111 ~~~~Al~~~ 119 (121)
T 3t6o_A 111 TKQEALLAM 119 (121)
T ss_dssp SHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999998754
No 154
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=36.06 E-value=1.6e+02 Score=27.75 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=20.4
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
+|+++.|. |+| ++.+. +.|.++..+ .-+|++.-|||.+
T Consensus 238 hp~v~~I~---FTG---S~~~G---~~i~~~aa~-------~~k~v~lElGGk~ 275 (497)
T 3i44_A 238 HPDLEMIS---FTG---STRAG---KDISKNASN-------TLKRVCLELGGKG 275 (497)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHHHT-------TTCEEEEECCCCC
T ss_pred CCCcCEEE---EeC---cHHHH---HHHHHHHhh-------cCCceeeccCCCC
Confidence 67766444 333 23333 555554432 2367777777754
No 155
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=35.71 E-value=2.2e+02 Score=24.83 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=64.0
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeec-cCCCCHHHHHHHH-----------HHHHhhhccCCCCCeEEEEec
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEY-SGAPNEEEVLQYA-----------RVVIDCATADPDGRKRALLIG 181 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDl-gG~a~~~~~~~al-----------~~ll~~~~~d~~v~~vlvni~ 181 (266)
+||+|+.|. .+-..+..+... | ++--+ --+.++++..+.. +-+++ ++++++|+|-.|
T Consensus 7 ~vgiiG~G~-~g~~~~~~l~~~-----~-~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~D~V~i~tp 75 (354)
T 3db2_A 7 GVAAIGLGR-WAYVMADAYTKS-----E-KLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLA----REDVEMVIITVP 75 (354)
T ss_dssp EEEEECCSH-HHHHHHHHHTTC-----S-SEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHH----CSSCCEEEECSC
T ss_pred eEEEEccCH-HHHHHHHHHHhC-----C-CcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhc----CCCCCEEEEeCC
Confidence 689998875 444445556544 1 11111 1234555544332 22344 789998887665
Q ss_pred ccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHH
Q 024560 182 GGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 182 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~ 260 (266)
... - + +-+..+++ ..++|++ .--..+.++++++.+. +++.|+.+.+. ...-...+++++.+
T Consensus 76 ~~~--h---~---~~~~~al~--------~gk~vl~EKP~~~~~~~~~~l~~~-a~~~~~~~~v~-~~~R~~p~~~~~k~ 137 (354)
T 3db2_A 76 NDK--H---A---EVIEQCAR--------SGKHIYVEKPISVSLDHAQRIDQV-IKETGVKFLCG-HSSRRLGALRKMKE 137 (354)
T ss_dssp TTS--H---H---HHHHHHHH--------TTCEEEEESSSCSSHHHHHHHHHH-HHHHCCCEEEE-CGGGGSHHHHHHHH
T ss_pred hHH--H---H---HHHHHHHH--------cCCEEEEccCCCCCHHHHHHHHHH-HHHcCCeEEEe-echhcCHHHHHHHH
Confidence 432 1 1 33344443 2477887 5557788999888774 44567765321 11233345555554
Q ss_pred Hh
Q 024560 261 CI 262 (266)
Q Consensus 261 ~~ 262 (266)
+.
T Consensus 138 ~i 139 (354)
T 3db2_A 138 MI 139 (354)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 156
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=35.62 E-value=95 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=19.5
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 219 RGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 219 l~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
..|...++|.++|.+.+++.|+|+.
T Consensus 92 f~Glg~~~GL~~L~~~~~e~GLpv~ 116 (298)
T 3fs2_A 92 ARGIGLEKALEVFSDLKKEYGFPVL 116 (298)
T ss_dssp ---CCHHHHHHHHHHHHHHHCCCEE
T ss_pred cCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 3455678999999999999999973
No 157
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=34.64 E-value=85 Score=22.62 Aligned_cols=74 Identities=11% Similarity=-0.052 Sum_probs=41.8
Q ss_pred CCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCC
Q 024560 171 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEAT 250 (266)
Q Consensus 171 ~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~ 250 (266)
+..+.++++ +++....|..+ ...++...++... ....+ ++.|.+ ..-+++|+ ..|+.-.+ .+.+
T Consensus 40 ~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~----~~gl~~~~--i~~~ 103 (117)
T 1h4x_A 40 GAVTTIIWN-FERLSFMDSSG--VGLVLGRMRELEA----VAGRT--ILLNPS-PTMRKVFQ----FSGLGPWM--MDAT 103 (117)
T ss_dssp TSCSEEEEE-EEEEEEECTHH--HHHHHHHHHHHHT----TTCEE--EEESCC-HHHHHHHH----HTTCGGGE--ECSC
T ss_pred CCCCEEEEE-CCCCcEechHH--HHHHHHHHHHHHH----cCCEE--EEEeCC-HHHHHHHH----HhCCceEE--EeCC
Confidence 345566666 45555555433 2455555555431 33333 345554 46788888 55875432 4779
Q ss_pred HHHHHHHHHH
Q 024560 251 MTGICKQAID 260 (266)
Q Consensus 251 ~~eAv~~av~ 260 (266)
.++|+..+-+
T Consensus 104 ~~~Al~~~~~ 113 (117)
T 1h4x_A 104 EEEAIDRVRG 113 (117)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 158
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=34.63 E-value=1.9e+02 Score=23.75 Aligned_cols=117 Identities=10% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCC-ceeec-cCCC----CHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELG-NYAEY-SGAP----NEEEVLQYARVVIDCATADPDGRKRALL 179 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pA-N~lDl-gG~a----~~~~~~~al~~ll~~~~~d~~v~~vlvn 179 (266)
.++|++++.-.+... ...+.+..+ |.+.. .++-. .++. +.+.-+++++-+++ . ++++||..
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~ai~~~ 194 (288)
T 2qu7_A 122 CKEVGLLLANPNISTTIGRKNGYNKAISEF--DLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLS----K-GIKGIVAT 194 (288)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHH----T-TCCEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCCCcceEEeccCCccccCCHHHHHHHHHHHHh----c-CCCEEEEC
Confidence 367999975433211 234566666 44432 22220 3444 55556667776776 4 67777742
Q ss_pred ecccccchhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHH
Q 024560 180 IGGGIANFTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICK 256 (266)
Q Consensus 180 i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~ 256 (266)
++.+| .|+++++++.+ .++| -|+-..+... + +.+. -.+.+. ..++.+..+
T Consensus 195 -------~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~ 247 (288)
T 2qu7_A 195 -------NHLLL---LGALQAIKESE-----KEIKKDVIIVGFDDSYW--N-EIYT-----PKLTVI----SQPVKEMGQ 247 (288)
T ss_dssp -------SHHHH---HHHHHHHHHSS-----CCBTTTBEEEEESCCTH--H-HHSS-----SCCCEE----ECCHHHHHH
T ss_pred -------CcHHH---HHHHHHHHHhC-----CCCCCceEEEEeCChHH--H-hhcC-----CCccEE----ecCHHHHHH
Confidence 56778 89999999874 2333 3445666542 2 2222 134332 336777767
Q ss_pred HHHHHh
Q 024560 257 QAIDCI 262 (266)
Q Consensus 257 ~av~~~ 262 (266)
.++++.
T Consensus 248 ~a~~~l 253 (288)
T 2qu7_A 248 VAAKMI 253 (288)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 159
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=34.47 E-value=1e+02 Score=23.32 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCce------ee
Q 024560 171 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPL------EV 244 (266)
Q Consensus 171 ~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~------~~ 244 (266)
+..+.++++ ++++...|..+ ...+++..++... .. +-+++.|.+ ..-+++|. .+|+.- ++
T Consensus 62 ~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g--~~l~l~~~~-~~v~~~l~----~~gl~~~~~~~~~i 127 (143)
T 3llo_A 62 ENIHTVILD-FTQVNFMDSVG--VKTLAGIVKEYGD----VG--IYVYLAGCS-AQVVNDLT----SNRFFENPALKELL 127 (143)
T ss_dssp -CCSEEEEE-CTTCCCCCHHH--HHHHHHHHHHHHT----TT--CEEEEESCC-HHHHHHHH----HTTTTSSGGGGGGE
T ss_pred CCceEEEEE-CCCCccccHHH--HHHHHHHHHHHHH----CC--CEEEEEeCC-HHHHHHHH----hCCCeeccCccceE
Confidence 456666666 56677666655 3556665555532 23 334455655 44678888 457642 33
Q ss_pred cCCCCCHHHHHHHH
Q 024560 245 YGPEATMTGICKQA 258 (266)
Q Consensus 245 ~~~~~~~~eAv~~a 258 (266)
|.|.++|+..+
T Consensus 128 ---f~s~~~Al~~~ 138 (143)
T 3llo_A 128 ---FHSIHDAVLGS 138 (143)
T ss_dssp ---ESSHHHHHHHT
T ss_pred ---ECcHHHHHHHH
Confidence 45999998764
No 160
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=34.43 E-value=2.8e+02 Score=25.87 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=12.1
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|..++. ..+++.|++.++.
T Consensus 255 p~iV~~-dADl~~Aa~~i~~ 273 (486)
T 1t90_A 255 HTIVLN-DANLEDTVTNIVG 273 (486)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred cEEECC-CCCHHHHHHHHHH
Confidence 455555 5577777777664
No 161
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=33.88 E-value=82 Score=27.61 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=37.9
Q ss_pred HHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcC
Q 024560 161 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELG 239 (266)
Q Consensus 161 ~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~G 239 (266)
+-+++ ++++++|+|-.|. .. +++-+.++++. .++|++ .=-..+.++++++.+. ++++|
T Consensus 60 ~~ll~----~~~vD~V~I~tp~-----~~---H~~~~~~al~a--------GkhVl~EKPla~~~~ea~~l~~~-a~~~g 118 (337)
T 3ip3_A 60 WEMLE----KEKPDILVINTVF-----SL---NGKILLEALER--------KIHAFVEKPIATTFEDLEKIRSV-YQKVR 118 (337)
T ss_dssp HHHHH----HHCCSEEEECSSH-----HH---HHHHHHHHHHT--------TCEEEECSSSCSSHHHHHHHHHH-HHHHT
T ss_pred HHHhc----CCCCCEEEEeCCc-----ch---HHHHHHHHHHC--------CCcEEEeCCCCCCHHHHHHHHHH-HHHhC
Confidence 44455 7899988875432 22 22545555542 467777 5556688899888773 45568
Q ss_pred Cc
Q 024560 240 IP 241 (266)
Q Consensus 240 ip 241 (266)
+.
T Consensus 119 ~~ 120 (337)
T 3ip3_A 119 NE 120 (337)
T ss_dssp TT
T ss_pred Cc
Confidence 76
No 162
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=33.57 E-value=1.6e+02 Score=25.69 Aligned_cols=78 Identities=17% Similarity=-0.002 Sum_probs=44.7
Q ss_pred ccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHh--hhhhcCCceee
Q 024560 168 TADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRA--LGEELGIPLEV 244 (266)
Q Consensus 168 ~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~--~~~~~Gip~~~ 244 (266)
+.+|++++|+|-.|.. .+++-++.|++ ..++|++ .=-..+.++++++..- .+++.|+.+.+
T Consensus 71 l~~~~iDaV~I~tP~~--------~H~~~~~~al~--------aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v 134 (390)
T 4h3v_A 71 LERDDVQLVDVCTPGD--------SHAEIAIAALE--------AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMV 134 (390)
T ss_dssp TTCTTCSEEEECSCGG--------GHHHHHHHHHH--------TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCCEEEEeCChH--------HHHHHHHHHHH--------cCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEE
Confidence 3389999998876543 22354555554 2477887 6667789999988431 12345766432
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 024560 245 YGPEATMTGICKQAIDCI 262 (266)
Q Consensus 245 ~~~~~~~~eAv~~av~~~ 262 (266)
.- ..-...+++++.++.
T Consensus 135 ~~-~~R~~p~~~~~k~~i 151 (390)
T 4h3v_A 135 GF-TYRRVPAIALARKLV 151 (390)
T ss_dssp EC-GGGGSHHHHHHHHHH
T ss_pred Ee-eeccCchHHHHHHHH
Confidence 11 112334555555544
No 163
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=33.46 E-value=1.9e+02 Score=27.14 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhCCceeeE
Q 024560 22 GDFIMGVFAVFQDLDFSFIE 41 (266)
Q Consensus 22 ~~ii~~Ly~~f~~~D~~l~E 41 (266)
.+++.++.+++.++--.+++
T Consensus 67 ~~~L~~~a~~l~~~~~ela~ 86 (490)
T 3ju8_A 67 IELLERFAATLKSRADELAR 86 (490)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554443433
No 164
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=33.13 E-value=3e+02 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=11.1
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 264 p~IV~~-dADl~~Aa~~i~~ 282 (517)
T 3r31_A 264 PMIVFD-DADIESAVGGAML 282 (517)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eEEEec-CCCHHHHHHHHHH
Confidence 445554 4566766666554
No 165
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=32.82 E-value=1.5e+02 Score=27.86 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=10.1
Q ss_pred CCCcEEEEecCchHHHHH
Q 024560 111 PKGRIWTMVAGGGASVIY 128 (266)
Q Consensus 111 l~G~Igii~NGaGlam~t 128 (266)
+-|=+++|+----+.+++
T Consensus 148 P~GVV~~I~PwN~P~~~~ 165 (497)
T 3k2w_A 148 PRGVVVGITAWNFPLALA 165 (497)
T ss_dssp ECSEEEEECCSSSHHHHH
T ss_pred CCceEEEECCCccHHHHH
Confidence 557777776544443333
No 166
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=32.64 E-value=99 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.0
Q ss_pred eCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 219 RGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 219 l~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
..|...++|.++|++.+++.|+|+.
T Consensus 71 f~G~g~~~GL~~L~~~~~e~Glp~~ 95 (285)
T 3sz8_A 71 YRGVGLDEGLKIFAEVKARFGVPVI 95 (285)
T ss_dssp CCCSCHHHHHHHHHHHHHHHCCCEE
T ss_pred cCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 3466678999999999999999963
No 167
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.62 E-value=2.1e+02 Score=23.61 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=65.8
Q ss_pred cEEEEecCchHHH------HHHHHHHhcCCCCCCCcee-eccCCCCHHHHHHHHHHHHhhhccCC--CCCeEEEEecccc
Q 024560 114 RIWTMVAGGGASV------IYADTVGDLGYASELGNYA-EYSGAPNEEEVLQYARVVIDCATADP--DGRKRALLIGGGI 184 (266)
Q Consensus 114 ~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~l-DlgG~a~~~~~~~al~~ll~~~~~d~--~v~~vlvni~ggi 184 (266)
+|++++.-.+... ...+.+..+ |.+. +.. -+-++.+.+.-+++++-+|+ ++| ++++||.
T Consensus 142 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ai~~------ 209 (309)
T 2fvy_A 142 QFVLLKGEPGHPDAEARTTYVIKELNDK--GIKT-EQLQLDTAMWDTAQAKDKMDAWLS---GPNANKIEVVIA------ 209 (309)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHHT--TCCE-EEEEEEECTTCHHHHHHHHHHHHT---STTGGGCCEEEE------
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHHhc--CCce-EEEEEecCCCCHHHHHHHHHHHHH---hCCCCCccEEEE------
Confidence 5788865433221 234667666 3332 222 22355667777777777765 234 7888874
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcc-cceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAA-RMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~-~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.++.+| .|+++++++.+ . +++|+ |-.+...+...+.+ |-+...+ ..++.+..+.+++++
T Consensus 210 -~~d~~a---~g~~~al~~~g-----~~di~vi---g~d~~~~~~~~~~~-----g~~lttv--~~~~~~~g~~a~~~l 269 (309)
T 2fvy_A 210 -NNDAMA---MGAVEALKAHN-----KSSIPVF---GVDALPEALALVKS-----GALAGTV--LNDANNQAKATFDLA 269 (309)
T ss_dssp -SSHHHH---HHHHHHHHHTT-----CTTSCEE---CSBCCHHHHHHHHH-----TSSCBEE--ECCHHHHHHHHHHHH
T ss_pred -CCchhH---HHHHHHHHHcC-----CCCceEE---ecCCCHHHHHHHHc-----CCceEEE--ecCHHHHHHHHHHHH
Confidence 267778 99999999874 3 56644 22334555555541 3222111 236676666666554
No 168
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=32.27 E-value=2.2e+02 Score=24.64 Aligned_cols=49 Identities=8% Similarity=-0.077 Sum_probs=28.9
Q ss_pred HHHHHHHHhcC-CCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEE
Q 024560 126 VIYADTVGDLG-YASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRAL 178 (266)
Q Consensus 126 m~t~D~l~~~g-~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlv 178 (266)
.+++|.++..| ..|++-.++-.-...++++-.++++-+++ +++|++|+.
T Consensus 32 ~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~----~~~V~~iig 81 (392)
T 3lkb_A 32 EDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVD----RFKIPVFLS 81 (392)
T ss_dssp HHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHH----TTCCSCEEE
T ss_pred HHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHh----hcCcEEEEe
Confidence 45678888873 01233333322233456677777777776 678888774
No 169
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=31.86 E-value=1.4e+02 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
+|++++|+|-.|.. .+++-+++|++. .++|++ .=-..+.++++++++. +++.|+.+
T Consensus 94 ~~~vD~V~I~tp~~--------~H~~~~~~al~a--------GkhVl~EKP~a~~~~ea~~l~~~-a~~~g~~~ 150 (412)
T 4gqa_A 94 DPQVDVVDITSPNH--------LHYTMAMAAIAA--------GKHVYCEKPLAVNEQQAQEMAQA-ARRAGVKT 150 (412)
T ss_dssp CTTCCEEEECSCGG--------GHHHHHHHHHHT--------TCEEEEESCSCSSHHHHHHHHHH-HHHHTCCE
T ss_pred CCCCCEEEECCCcH--------HHHHHHHHHHHc--------CCCeEeecCCcCCHHHHHHHHHH-HHHhCCee
Confidence 89999988765532 122445555542 477887 6667789999998874 45667765
No 170
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=31.74 E-value=97 Score=27.09 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=57.8
Q ss_pred cEEEEecCchHH-HHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH------------HHHHhhhccCCCCCeEEEEe
Q 024560 114 RIWTMVAGGGAS-VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA------------RVVIDCATADPDGRKRALLI 180 (266)
Q Consensus 114 ~Igii~NGaGla-m~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al------------~~ll~~~~~d~~v~~vlvni 180 (266)
|||||+.|. .+ .....++.... +.+..-. -+.++++..+.. +-+|+ ++++++|+|-.
T Consensus 25 rigiIG~G~-ig~~~~~~~~~~~~-~~~lvav----~d~~~~~a~~~a~~~g~~~~y~d~~ell~----~~~iDaV~I~t 94 (350)
T 4had_A 25 RFGIISTAK-IGRDNVVPAIQDAE-NCVVTAI----ASRDLTRAREMADRFSVPHAFGSYEEMLA----SDVIDAVYIPL 94 (350)
T ss_dssp EEEEESCCH-HHHHTHHHHHHHCS-SEEEEEE----ECSSHHHHHHHHHHHTCSEEESSHHHHHH----CSSCSEEEECS
T ss_pred EEEEEcChH-HHHHHHHHHHHhCC-CeEEEEE----ECCCHHHHHHHHHHcCCCeeeCCHHHHhc----CCCCCEEEEeC
Confidence 799997775 33 22355665542 2222111 234444433322 22455 89999999876
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
|.. .+++-+.++++ ..++|++ .=-..+.++++++++. +++.|+.+
T Consensus 95 P~~--------~H~~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~~~~l 140 (350)
T 4had_A 95 PTS--------QHIEWSIKAAD--------AGKHVVCEKPLALKAGDIDAVIAA-RDRNKVVV 140 (350)
T ss_dssp CGG--------GHHHHHHHHHH--------TTCEEEECSCCCSSGGGGHHHHHH-HHHHTCCE
T ss_pred CCc--------hhHHHHHHHHh--------cCCEEEEeCCcccchhhHHHHHHH-HHHcCCce
Confidence 543 12244455554 2467777 5556688889888763 45667765
No 171
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.48 E-value=72 Score=26.54 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=60.1
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.+|++++...+... ...+.+..+ |.++..-.-..++.+.+..+++++-+|+ +.|++++|+. .
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 193 (291)
T 3egc_A 126 TRIGAIVGSAGLMTSRERLKGFRAAMSAA--GLPVRQEWIAAGGVRADNGRDGAIKVLT---GADRPTALLT-------S 193 (291)
T ss_dssp CSEEEECSCTTSHHHHHHHHHHHHHHHHT--TCCCCGGGEEC------CCHHHHHHHHT---C-CCCSEEEE-------S
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHHHHc--CCCCCHHHeEeCCCChhHHHHHHHHHHh---CCCCCcEEEE-------C
Confidence 56888865543211 134556665 3332211112244444555555555554 3688888874 3
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccce---EEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMH---IFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~p---vvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
++.+| .|+++++++.+ .++| -|+-..+... + +.+. -++.+. ..++.+..+.++++.
T Consensus 194 ~d~~a---~g~~~al~~~g-----~~vP~di~vvg~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~av~~l 252 (291)
T 3egc_A 194 SHRIT---EGAMQALNVLG-----LRYGPDVEIVSFDNLPW--M-AFLD-----PPLPVV----EQPTRRIGQEAMRML 252 (291)
T ss_dssp SHHHH---HHHHHHHHHHT-----CCBTTTBEEEEESCCGG--G-GGSS-----SCCCEE----ECCHHHHHHHHHHHH
T ss_pred CcHHH---HHHHHHHHHcC-----CCCCCceEEEEecCchh--H-hhcC-----CCceEE----EECHHHHHHHHHHHH
Confidence 67778 99999999885 2333 2345555432 1 1111 134332 347777777777664
No 172
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=31.36 E-value=2.2e+02 Score=26.78 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCCceeeEee
Q 024560 20 KIGDFIMGVFAVFQDLDFSFIEMN 43 (266)
Q Consensus 20 ~~~~ii~~Ly~~f~~~D~~l~EIN 43 (266)
+=.+++.++.++..++--.+++++
T Consensus 78 ~R~~~L~~~a~~l~~~~~ela~~~ 101 (501)
T 1uxt_A 78 ERLAVLRKAADIIERNLDVFAEVL 101 (501)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 335667777777776655555543
No 173
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=31.16 E-value=1.1e+02 Score=29.05 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=12.0
Q ss_pred cCCCcEEEEecCchHHHHHH
Q 024560 110 NPKGRIWTMVAGGGASVIYA 129 (266)
Q Consensus 110 ~l~G~Igii~NGaGlam~t~ 129 (266)
.+-|=+++|+----+.++++
T Consensus 160 ~P~GVv~~I~PwN~P~~~~~ 179 (498)
T 4f3x_A 160 DPIGIVGSIAPWNYPLMMMA 179 (498)
T ss_dssp EECCEEEEECCSSSHHHHHH
T ss_pred cCcceEEEECCCchHHHHHH
Confidence 36688888865554444443
No 174
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=30.83 E-value=2.6e+02 Score=24.09 Aligned_cols=121 Identities=17% Similarity=0.046 Sum_probs=64.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHH----------HHHHhhhccCCCCCeEEEEeccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYA----------RVVIDCATADPDGRKRALLIGGG 183 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al----------~~ll~~~~~d~~v~~vlvni~gg 183 (266)
+||+|+.|. .+-.....+.... +-+.. .--+.++++..+.. +-+++ ++++++|+|-.|..
T Consensus 5 ~vgiiG~G~-~g~~~~~~l~~~~-~~~l~----av~d~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 5 RFGLLGAGR-IGKVHAKAVSGNA-DARLV----AVADAFPAAAEAIAGAYGCEVRTIDAIEA----AADIDAVVICTPTD 74 (331)
T ss_dssp EEEEECCSH-HHHHHHHHHHHCT-TEEEE----EEECSSHHHHHHHHHHTTCEECCHHHHHH----CTTCCEEEECSCGG
T ss_pred EEEEECCCH-HHHHHHHHHhhCC-CcEEE----EEECCCHHHHHHHHHHhCCCcCCHHHHhc----CCCCCEEEEeCCch
Confidence 688998765 3444455565541 11111 11344555443322 23455 88999888765432
Q ss_pred ccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 184 IANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 184 i~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
.-+ +-+..+++ ..++|++ .--..+.++++++.+. +++.|+.+.+ +...-...+++++.++.
T Consensus 75 -----~h~---~~~~~al~--------~gk~v~~EKP~~~~~~~~~~l~~~-a~~~g~~~~v-~~~~r~~p~~~~~~~~i 136 (331)
T 4hkt_A 75 -----THA---DLIERFAR--------AGKAIFCEKPIDLDAERVRACLKV-VSDTKAKLMV-GFNRRFDPHFMAVRKAI 136 (331)
T ss_dssp -----GHH---HHHHHHHH--------TTCEEEECSCSCSSHHHHHHHHHH-HHHTTCCEEE-CCGGGGCHHHHHHHHHH
T ss_pred -----hHH---HHHHHHHH--------cCCcEEEecCCCCCHHHHHHHHHH-HHHcCCeEEE-cccccCCHHHHHHHHHH
Confidence 112 33344433 2467777 5557788999887763 4566876532 11122334555555544
No 175
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=30.79 E-value=98 Score=27.36 Aligned_cols=75 Identities=9% Similarity=-0.020 Sum_probs=40.7
Q ss_pred eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEE--EEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCC
Q 024560 144 YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA--LLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGG 221 (266)
Q Consensus 144 ~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vl--vni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G 221 (266)
-+-++|..+.+......+.++..-..++ .|.|. ||.|||-... ..+|.++++.+ +.||++..+|
T Consensus 84 II~l~G~I~d~~a~~iiaqL~~l~~ed~-~k~I~L~INSPGGsV~a------g~aIyd~I~~~-------k~pV~t~v~G 149 (277)
T 1tg6_A 84 IVCVMGPIDDSVASLVIAQLLFLQSESN-KKPIHMYINSPGGVVTA------GLAIYDTMQYI-------LNPICTWCVG 149 (277)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHHHCS-SSCEEEEEEECCBCHHH------HHHHHHHHHHS-------CSCEEEEEEE
T ss_pred EEEEcCEECHHHHHHHHHHHHHHHhcCC-CCCEEEEEECCCCCHHH------HHHHHHHHHhc-------CCCEEEEEcc
Confidence 4556676666544444444432111244 45444 5579986422 26777877765 4678877776
Q ss_pred CCHHHHHHHHH
Q 024560 222 PNYQTGLAKMR 232 (266)
Q Consensus 222 ~~~~~~~~~L~ 232 (266)
--+-.|-=++.
T Consensus 150 ~AASaG~~Ia~ 160 (277)
T 1tg6_A 150 QAASMGSLLLA 160 (277)
T ss_dssp EEETHHHHHHH
T ss_pred EeHHHHHHHHH
Confidence 54444433333
No 176
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=30.49 E-value=2.5e+02 Score=23.79 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=47.4
Q ss_pred CcEEEEecCchHHH-----HHHHHHHhcCCCCCCCcee-eccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV-----IYADTVGDLGYASELGNYA-EYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam-----~t~D~l~~~g~gg~pAN~l-DlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
++|++++.-.+... ...+.+..+ |. + ... -+-++.+.+.-+++++-+|+ ++|++++|+. .
T Consensus 176 ~~I~~i~~~~~~~~~~R~~Gf~~~l~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~-------~ 241 (342)
T 1jx6_A 176 TYYSVLYFSEGYISDVRGDTFIHQVNRD--NN-F-ELQSAYYTKATKQSGYDAAKASLA---KHPDVDFIYA-------C 241 (342)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHHHHHH--HC-C-EEEEEECCCSSHHHHHHHHHHHHH---HCCCCSEEEE-------S
T ss_pred ceEEEEEcCCcchhhHHHHHHHHHHHhC--CC-c-EEEEEecCCCCHHHHHHHHHHHHH---hCCCccEEEE-------C
Confidence 67999865444211 234566666 33 2 221 12355566766777666665 2678888874 3
Q ss_pred hhHhhhhHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKE 205 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~ 205 (266)
++.+| -|+++++++.+
T Consensus 242 nd~~A---~g~~~al~~~g 257 (342)
T 1jx6_A 242 STDVA---LGAVDALAELG 257 (342)
T ss_dssp SHHHH---HHHHHHHHHHT
T ss_pred CChhH---HHHHHHHHHcC
Confidence 67778 99999999874
No 177
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.19 E-value=1.8e+02 Score=25.56 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHH---------HHHHHHHhhhccCCCCCeEEEEecccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL---------QYARVVIDCATADPDGRKRALLIGGGI 184 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~---------~al~~ll~~~~~d~~v~~vlvni~ggi 184 (266)
|||+|+.|.-........+.... +.+..-.+ +.++++.. .-++-+++ ++++++|+|-.|...
T Consensus 9 rvgiiG~G~~g~~~~~~~~~~~~-~~~l~av~----d~~~~~~~~~~~~~~~~~~~~~ll~----~~~vD~V~i~tp~~~ 79 (352)
T 3kux_A 9 KVGLLGYGYASKTFHAPLIMGTP-GLELAGVS----SSDASKVHADWPAIPVVSDPQMLFN----DPSIDLIVIPTPNDT 79 (352)
T ss_dssp EEEEECCSHHHHHTHHHHHHTST-TEEEEEEE----CSCHHHHHTTCSSCCEESCHHHHHH----CSSCCEEEECSCTTT
T ss_pred eEEEECCCHHHHHHHHHHHhhCC-CcEEEEEE----CCCHHHHHhhCCCCceECCHHHHhc----CCCCCEEEEeCChHH
Confidence 68898877632223456665542 22221111 22233221 22344466 899999887655432
Q ss_pred cchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 185 ANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 185 ~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
+++-+..+++ ..++|++ .=-..+.++++++.. .+++.|+.+.+.- ..-...+++++.++.
T Consensus 80 --------H~~~~~~al~--------aGkhV~~EKPla~~~~e~~~l~~-~a~~~g~~~~v~~-~~r~~p~~~~~~~~i 140 (352)
T 3kux_A 80 --------HFPLAQSALA--------AGKHVVVDKPFTVTLSQANALKE-HADDAGLLLSVFH-NRRWDSDFLTLKTLL 140 (352)
T ss_dssp --------HHHHHHHHHH--------TTCEEEECSSCCSCHHHHHHHHH-HHHHTTCCEEECC-GGGGCHHHHHHHHHH
T ss_pred --------HHHHHHHHHH--------CCCcEEEECCCcCCHHHHHHHHH-HHHHcCCeEEEEe-ecccCHHHHHHHHHH
Confidence 1244444443 2477887 444678899988776 4556787654321 112234455555544
No 178
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=29.88 E-value=39 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 024560 12 TLPLEFRGKIGDFIMGVFAVFQ 33 (266)
Q Consensus 12 gl~~~~~~~~~~ii~~Ly~~f~ 33 (266)
.++++..+++.++..++|+.+.
T Consensus 274 ~l~~~~~~~i~~~a~~~~~aLg 295 (372)
T 3tqt_A 274 DLSESVTKQIQQIAIDAFKMVH 295 (372)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 4677888999999999999854
No 179
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.86 E-value=60 Score=27.29 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=62.2
Q ss_pred CcEEEEecCchHH------HHHHHHHHhcCCCCCCCceeeccC---CCCHHHHH--HHHHHHHhhhccCCCCCeEEEEec
Q 024560 113 GRIWTMVAGGGAS------VIYADTVGDLGYASELGNYAEYSG---APNEEEVL--QYARVVIDCATADPDGRKRALLIG 181 (266)
Q Consensus 113 G~Igii~NGaGla------m~t~D~l~~~g~gg~pAN~lDlgG---~a~~~~~~--~al~~ll~~~~~d~~v~~vlvni~ 181 (266)
.+|++++...+.. --..+.+..+ |..+..-.-+.+ +.+.+.-+ ++++-+|+ ..|.+++||.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~--- 203 (301)
T 3miz_A 132 RRIGYIRLNPILLGAELRLDAFRRTTSEF--GLTENDLSISLGMDGPVGAENNYVFAAATEMLK---QDDRPTAIMS--- 203 (301)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHH--TCCGGGEEEEECEESSTTSCEECHHHHHHHHHT---STTCCSEEEE---
T ss_pred CeEEEEecCccchhHHHHHHHHHHHHHHc--CCCCCcceEEEcCCCCcCccccHHHHHHHHHHc---CCCCCcEEEE---
Confidence 5799987554432 1245667776 343221111222 22333223 44544454 2678888874
Q ss_pred ccccchhHhhhhHHHHHHHHHHhhhhhhcccce--E-EEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 024560 182 GGIANFTDVATTFNGIIRALREKESKLKAARMH--I-FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 182 ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~p--v-vvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
.++.+| -|+++++++.+ .++| | |+-..+. .+..+.+. -++.+. ..++++..+.+
T Consensus 204 ----~~d~~A---~g~~~al~~~g-----~~vP~di~vig~D~~--~~~~~~~~-----p~lttv----~~~~~~~g~~a 260 (301)
T 3miz_A 204 ----GNDEMA---IQIYIAAMALG-----LRIPQDVSIVGFDDF--RTVTMALK-----PELTTA----ALPYYDLGREG 260 (301)
T ss_dssp ----SSHHHH---HHHHHHHHTTT-----CCHHHHCEEECSBCC--HHHHTTSS-----SCCBEE----ECCHHHHHHHH
T ss_pred ----CCHHHH---HHHHHHHHHcC-----CCCCCCeeEEEeCCc--HHHhccCC-----CCeeEE----ecCHHHHHHHH
Confidence 367788 99999999874 3444 2 3333332 21111111 144332 34777777777
Q ss_pred HHHh
Q 024560 259 IDCI 262 (266)
Q Consensus 259 v~~~ 262 (266)
+++.
T Consensus 261 v~~l 264 (301)
T 3miz_A 261 AKWL 264 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 180
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=29.70 E-value=1.4e+02 Score=26.30 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=38.6
Q ss_pred cccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC-CHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHH
Q 024560 181 GGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP-NYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQ 257 (266)
Q Consensus 181 ~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~-~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~ 257 (266)
+||-.-...+- +.+.+++..... .....|++..|. +.+.-++.+. +.++++++++..++|.+....
T Consensus 186 ~gGs~g~~~~~---~~~~~al~~l~~----~~~~~vi~~~G~~~~~~~~~~~~----~~~~~~~v~~f~~dm~~~l~~ 252 (365)
T 3s2u_A 186 LGGSLGAEPLN---KLLPEALAQVPL----EIRPAIRHQAGRQHAEITAERYR----TVAVEADVAPFISDMAAAYAW 252 (365)
T ss_dssp CCTTTTCSHHH---HHHHHHHHTSCT----TTCCEEEEECCTTTHHHHHHHHH----HTTCCCEEESCCSCHHHHHHH
T ss_pred ECCcCCccccc---hhhHHHHHhccc----ccceEEEEecCccccccccceec----ccccccccccchhhhhhhhcc
Confidence 44433344444 667777766531 122344566665 4455556666 568888888867788776543
No 181
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=29.22 E-value=1.8e+02 Score=21.76 Aligned_cols=79 Identities=9% Similarity=0.002 Sum_probs=44.6
Q ss_pred CCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecC---CC
Q 024560 172 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYG---PE 248 (266)
Q Consensus 172 ~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~---~~ 248 (266)
+.+.++++ ++++...|..+ ...+.+..++... ... -+++.|.+ ..-+++|+ .+|+.-. ++ .|
T Consensus 51 ~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~--~l~l~~~~-~~v~~~l~----~~gl~~~-~~~~~i~ 115 (135)
T 4dgf_A 51 TPKVFILR-MRRVPVIDATG--MHALWEFQESCEK----RGT--ILLLSGVS-DRLYGALN----RFGFIEA-LGEERVF 115 (135)
T ss_dssp CCSEEEEE-CTTCSCBCHHH--HHHHHHHHHHHHH----HTC--EEEEESCC-HHHHHHHH----HHTHHHH-HCGGGBC
T ss_pred CCcEEEEE-cCCCCccCHHH--HHHHHHHHHHHHH----CCC--EEEEEcCC-HHHHHHHH----HcCChhh-cCcccee
Confidence 44555555 56666666655 2555555555432 233 33445555 45567777 4465310 10 25
Q ss_pred CCHHHHHHHHHHHhhhc
Q 024560 249 ATMTGICKQAIDCIMSA 265 (266)
Q Consensus 249 ~~~~eAv~~av~~~~~~ 265 (266)
.|.++|+..+.+....|
T Consensus 116 ~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 116 DHIDKALAYAKLLVETA 132 (135)
T ss_dssp SSHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 69999999988776554
No 182
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=28.29 E-value=4e+02 Score=30.18 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=72.4
Q ss_pred cEEEEecCchHHHHHHHHH---HhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHh
Q 024560 114 RIWTMVAGGGASVIYADTV---GDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 190 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l---~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~v 190 (266)
++=||..|-+..+...++. ..+|+-|.. --+|..+++.+.+.++-+-+.. +.-+.+-+|++---.+...-
T Consensus 582 ~~PIi~a~M~~~vs~~~LaaAva~aGglG~i----~g~g~~~~e~l~~~i~~vk~~~---~~~~p~gvN~~~~~p~~~~~ 654 (2060)
T 2uva_G 582 VPPVMVAGMTPTTVPWDFVAATMNAGYHIEL----AGGGYYNAQKMSDAISKIEKAI---PPGRGITVNLIYVNPRAMGW 654 (2060)
T ss_dssp SCSEEECCCTTTTCSHHHHHHHHHTTCEECE----EGGGCCSHHHHHHHHHHHGGGS---CTTCCEEEEEETTCTTHHHH
T ss_pred cceEEecCCCCccccHHHHHHHHHCCCEEEE----CcCCCCCHHHHHHHHHHHHhhc---ccCCCeEecccccCcccchh
Confidence 6667777766434344443 344322221 1156678999999988775521 11346778853211111100
Q ss_pred hhhHHHHHHHHHHhhhhhhcccceE--EE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 191 ATTFNGIIRALREKESKLKAARMHI--FV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 191 A~~~~gii~al~~~~~~~~~~~~pv--vv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
...+++.+.+ .+.|+ |+ -.|-+..++..+.++ ++|+++..+ ..+..+|.+++.++++
T Consensus 655 ---~~~~~~~~~~-------~gv~i~gv~~~~G~p~~e~~~~~l~----~~gi~~i~~--v~~~~~a~~~v~~l~~ 714 (2060)
T 2uva_G 655 ---QIPLLGRLRA-------DGVPIEGLTIGAGVPSIEVANEYIQ----TLGIRHISF--KPGSVDAIQQVINIAK 714 (2060)
T ss_dssp ---HHHHHHHHHT-------TTCCEEEEEEESSCCCHHHHHHHHH----HSCCSEEEE--CCCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHH-------cCCCcceEeecCCCCCHHHHHHHHH----HcCCeEEEe--cCCHHHHHHHHHHHHH
Confidence 1233444443 35777 65 455567778999999 679986543 5678888888766654
No 183
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=27.96 E-value=1.6e+02 Score=28.14 Aligned_cols=14 Identities=29% Similarity=0.133 Sum_probs=9.2
Q ss_pred CCCcEEEEecCchH
Q 024560 111 PKGRIWTMVAGGGA 124 (266)
Q Consensus 111 l~G~Igii~NGaGl 124 (266)
+-|=+++|+----+
T Consensus 172 P~GVV~~I~PwN~P 185 (538)
T 3qan_A 172 PMGVTVTISPWNFA 185 (538)
T ss_dssp ECCEEEEECCSTTT
T ss_pred CCcEEEEECCCchH
Confidence 55778888655544
No 184
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=27.94 E-value=2.7e+02 Score=25.04 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=44.6
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEec-----ccc---cchhHhhhhHHHHHHHHHHhhhhhhcccceEE
Q 024560 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----GGI---ANFTDVATTFNGIIRALREKESKLKAARMHIF 216 (266)
Q Consensus 145 lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~-----ggi---~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv 216 (266)
+.++| .+++.|.++++.+-+ .+-.+++=||+. |+. .+. +.. .-|++++++. .++||+
T Consensus 133 vsI~g-~~~~d~~~~a~~l~~----~g~~d~ielNisCPn~~G~~~l~~~~-e~l---~~il~av~~~------~~~PV~ 197 (345)
T 3oix_A 133 LSLVG-MSPEETHTILXMVEA----SKYQGLVELNLSCPNVPGXPQIAYDF-ETT---DQILSEVFTY------FTKPLG 197 (345)
T ss_dssp EEECC-SSHHHHHHHHHHHHH----SSCCSEEEEECSCCCSTTCCCGGGCH-HHH---HHHHHHHTTT------CCSCEE
T ss_pred EEecC-CCHHHHHHHHHHHhc----cCCCcEEEEecCCCCcCCchhhcCCH-HHH---HHHHHHHHHH------hCCCeE
Confidence 44555 457889999998865 333348899963 221 111 222 4566665554 468999
Q ss_pred EEeCC-CCHHHHHHHHHh
Q 024560 217 VRRGG-PNYQTGLAKMRA 233 (266)
Q Consensus 217 vrl~G-~~~~~~~~~L~~ 233 (266)
+++.- .+..+-.+++.+
T Consensus 198 vKi~p~~~~~~~a~~~~~ 215 (345)
T 3oix_A 198 IKLPPYFDIVHFDQAAAI 215 (345)
T ss_dssp EEECCCCCHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 97664 455666666664
No 185
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.73 E-value=3e+02 Score=23.76 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=66.9
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++ .|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++...+.. .. |++-.|++
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-----~Gv~gl~v~GttGE~~~Ls~~E-r~~v~~~~~~~~-----~g--vi~Gvg~~ 74 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-----KGVDVVFVAGTTGLGPALSLQE-KMELTDAATSAA-----RR--VIVQVASL 74 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-----TTCCEEEETSTTTTGGGSCHHH-HHHHHHHHHHHC-----SS--EEEECCCS
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-----CCCCEEEECccccChhhCCHHH-HHHHHHHHHHHh-----CC--EEEeeCCC
Confidence 4667 788999999999998886 5899999883323222111111 145556555542 22 77899999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIMS 264 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~~ 264 (266)
+-+++.+..+.. +++|.. -+++. -.+.++.++.+-.++.+
T Consensus 75 ~t~~ai~la~~A-~~~Gadavlv~~P~y~~-~~s~~~l~~~f~~va~a 120 (286)
T 2r91_A 75 NADEAIALAKYA-ESRGAEAVASLPPYYFP-RLSERQIAKYFRDLCSA 120 (286)
T ss_dssp SHHHHHHHHHHH-HHTTCSEEEECCSCSST-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEEcCCcCCC-CCCHHHHHHHHHHHHHh
Confidence 999988877743 345632 12111 03778888888777764
No 186
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.63 E-value=1.4e+02 Score=24.50 Aligned_cols=78 Identities=9% Similarity=0.120 Sum_probs=42.9
Q ss_pred CcEEEEecCchHHH-----HHHHHHHhcCCCCCCC--ceeeccCCCCHHHHHHHHHHHHhhhccCCC--CCeEEEEeccc
Q 024560 113 GRIWTMVAGGGASV-----IYADTVGDLGYASELG--NYAEYSGAPNEEEVLQYARVVIDCATADPD--GRKRALLIGGG 183 (266)
Q Consensus 113 G~Igii~NGaGlam-----~t~D~l~~~g~gg~pA--N~lDlgG~a~~~~~~~al~~ll~~~~~d~~--v~~vlvni~gg 183 (266)
.+|++++....... ...+.+..+ |.++. ...........+..+++++-+|+ +.|+ +++|+.
T Consensus 138 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ai~~----- 207 (298)
T 3tb6_A 138 THMMGIFKADDTQGVKRMNGFIQAHRER--ELFPSPDMIVTFTTEEKESKLLEKVKATLE---KNSKHMPTAILC----- 207 (298)
T ss_dssp CSEEEEEESSSHHHHHHHHHHHHHHHHT--TCCCCGGGEEEECHHHHTTHHHHHHHHHHH---HTTTSCCSEEEC-----
T ss_pred CcEEEEcCCCCccHHHHHHHHHHHHHHc--CCCCCcceEEEecccchhhhHHHHHHHHHh---cCCCCCCeEEEE-----
Confidence 57998875444211 235677776 34332 22222211111112444444444 2677 888873
Q ss_pred ccchhHhhhhHHHHHHHHHHhh
Q 024560 184 IANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 184 i~~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| .|+++++++.+
T Consensus 208 --~~d~~a---~g~~~al~~~g 224 (298)
T 3tb6_A 208 --YNDEIA---LKVIDMLREMD 224 (298)
T ss_dssp --SSHHHH---HHHHHHHHHTT
T ss_pred --eCcHHH---HHHHHHHHHcC
Confidence 367788 99999999875
No 187
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=27.16 E-value=4.2e+02 Score=25.80 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHH
Q 024560 123 GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALR 202 (266)
Q Consensus 123 Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~ 202 (266)
|+-|+ ..+|...| -.-+|+|-+.+++.+.++++-. + +++|.+- +.++...... +-+++.++
T Consensus 114 G~~iv-a~~L~~~G-----~eVi~LG~~vP~e~iv~aa~~~------~--~diVgLS--~l~t~~~~~m---~~~i~~Lr 174 (579)
T 3bul_A 114 GKNIV-GVVLQCNN-----YEIVDLGVMVPAEKILRTAKEV------N--ADLIGLS--GLITPSLDEM---VNVAKEME 174 (579)
T ss_dssp HHHHH-HHHHHTTT-----CEEEECCSSBCHHHHHHHHHHH------T--CSEEEEE--CCSTHHHHHH---HHHHHHHH
T ss_pred HHHHH-HHHHHHCC-----CEEEECCCCCCHHHHHHHHHHc------C--CCEEEEE--ecCCCCHHHH---HHHHHHHH
Confidence 55554 34555552 3457899999999887774433 3 4455544 3333333333 66777777
Q ss_pred HhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 203 EKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 203 ~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+.. .++||++-=...+.+.+.+.+... -.|-..+ ..+..+||+.+-++..
T Consensus 175 ~~g-----~~i~ViVGGa~~~~~~a~~~i~p~--~~GAD~y----a~DA~~Av~~a~~l~~ 224 (579)
T 3bul_A 175 RQG-----FTIPLLIGGATTSKAHTAVKIEQN--YSGPTVY----VQNASRTVGVVAALLS 224 (579)
T ss_dssp HTT-----CCSCEEEESTTCCHHHHHHHTGGG--CSSCEEE----CCSHHHHHHHHHHHTC
T ss_pred HcC-----CCCeEEEEccccchhhhhhhhhhc--ccCCeEE----ECCHHHHHHHHHHHhc
Confidence 643 456765533334544444333211 1154343 5699999998888763
No 188
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=26.81 E-value=1.1e+02 Score=25.90 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeC--CCCHHHHHHHHHhhhhhcCCceeecC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRG--GPNYQTGLAKMRALGEELGIPLEVYG 246 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~--G~~~~~~~~~L~~~~~~~Gip~~~~~ 246 (266)
||+.. .=|..+-.=++|-+=| +-|++.+++++ ...+-|++ ||= .+..++|++.|. ++|+.+.+..
T Consensus 95 d~~~~-Y~vTwy~SWSPC~~CA---~~v~~FL~~~~----~v~L~If~aRLY~~~~~~~~gLr~L~----~aG~~v~iM~ 162 (203)
T 3v4k_A 95 DLDQD-YRVTCFTSWSPCFSCA---QEMAKFISKNK----HVSLCIKTARIYDDQGRCQEGLRTLA----EAGAKISIMT 162 (203)
T ss_pred CCCCe-EEEEEEEeCCChHHHH---HHHHHHHhhCC----CeEEEEEEEeecccCchHHHHHHHHH----HCCCeEEecC
Confidence 44432 3444566777899888 99999999885 24666775 765 466789999999 6799887654
Q ss_pred CCCCHHHHHHHHH
Q 024560 247 PEATMTGICKQAI 259 (266)
Q Consensus 247 ~~~~~~eAv~~av 259 (266)
+.+.+..=+.+|
T Consensus 163 -~~ef~~CW~~FV 174 (203)
T 3v4k_A 163 -YSEFKHCWDTFV 174 (203)
T ss_pred -HHHHHHHHHHHc
Confidence 444444444444
No 189
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=26.67 E-value=2.1e+02 Score=24.86 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=42.9
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPE 248 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~ 248 (266)
++++++|+|-.|.. .-+ +-+..+++ ..++|++ .=-..+.++++++.+. +++.|+.+...+..
T Consensus 64 ~~~~D~V~i~tp~~-----~h~---~~~~~al~--------~Gk~vl~EKP~a~~~~e~~~l~~~-a~~~g~~~~~v~~~ 126 (344)
T 3mz0_A 64 DENVDAVLVTSWGP-----AHE---SSVLKAIK--------AQKYVFCEKPLATTAEGCMRIVEE-EIKVGKRLVQVGFM 126 (344)
T ss_dssp CTTCCEEEECSCGG-----GHH---HHHHHHHH--------TTCEEEECSCSCSSHHHHHHHHHH-HHHHSSCCEEECCG
T ss_pred CCCCCEEEECCCch-----hHH---HHHHHHHH--------CCCcEEEcCCCCCCHHHHHHHHHH-HHHHCCEEEEEecc
Confidence 78899888765432 112 33344443 2467887 5556788999888773 45668765211212
Q ss_pred CCHHHHHHHHHHHh
Q 024560 249 ATMTGICKQAIDCI 262 (266)
Q Consensus 249 ~~~~eAv~~av~~~ 262 (266)
.-...+++++.++.
T Consensus 127 ~r~~p~~~~~k~~i 140 (344)
T 3mz0_A 127 RRYDSGYVQLKEAL 140 (344)
T ss_dssp GGGSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH
Confidence 22334555555544
No 190
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=26.43 E-value=2.3e+02 Score=22.01 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccc--ccchhHhhhhHHHHHHHHHHh
Q 024560 150 APNEEEVLQYARVVIDCATADPDGRKRALLIGGG--IANFTDVATTFNGIIRALREK 204 (266)
Q Consensus 150 ~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~gg--i~~~~~vA~~~~gii~al~~~ 204 (266)
+.+...+.+-++-.+. ..+.+.|+|++.+- ..+.++...+.+.+++.+++.
T Consensus 56 ~~~~~~~~~~~~~~~~----~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~ 108 (200)
T 4h08_A 56 SVGDPALIEELAVVLK----NTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKY 108 (200)
T ss_dssp CTTCHHHHHHHHHHHH----HSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHh----cCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3333444444444443 45567777764321 234566665667777777765
No 191
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=26.42 E-value=2.2e+02 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=22.3
Q ss_pred cCCCcEEEEecCc---hHHHHHHHHHHhc
Q 024560 110 NPKGRIWTMVAGG---GASVIYADTVGDL 135 (266)
Q Consensus 110 ~l~G~Igii~NGa---Glam~t~D~l~~~ 135 (266)
+|.|++++|+.++ |++..+.-.+...
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~ 31 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQL 31 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHC
Confidence 5789999999753 8999999999888
No 192
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=26.40 E-value=3.5e+02 Score=24.11 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=39.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEec-----------c-cccchhHhhhhHHHHHHHHHHhhhhhhccc
Q 024560 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----------G-GIANFTDVATTFNGIIRALREKESKLKAAR 212 (266)
Q Consensus 145 lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~-----------g-gi~~~~~vA~~~~gii~al~~~~~~~~~~~ 212 (266)
+.++| .+++.+.++.+.+.+ -+.++|=||.. | ...+-.+.. .-|++++++. ..
T Consensus 62 vQL~g-~~p~~~~~aA~~a~~-----~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~---~eiv~av~~~------v~ 126 (350)
T 3b0p_A 62 LQLAG-SDPKSLAEAARIGEA-----FGYDEINLNLGCPSEKAQEGGYGACLLLDLARV---REILKAMGEA------VR 126 (350)
T ss_dssp EEEEC-SCHHHHHHHHHHHHH-----TTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHH---HHHHHHHHHH------CS
T ss_pred EEeCC-CCHHHHHHHHHHHHH-----cCCCEEEECCcCCCCcCcCCCcchhHHhCHHHH---HHHHHHHHHH------hC
Confidence 44544 357889999888865 57888988852 1 111112222 4566666654 36
Q ss_pred ceEEE--EeCCCC
Q 024560 213 MHIFV--RRGGPN 223 (266)
Q Consensus 213 ~pvvv--rl~G~~ 223 (266)
+||.+ |+|..+
T Consensus 127 ~PV~vKiR~g~~~ 139 (350)
T 3b0p_A 127 VPVTVKMRLGLEG 139 (350)
T ss_dssp SCEEEEEESCBTT
T ss_pred CceEEEEecCcCc
Confidence 88887 766543
No 193
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=26.40 E-value=1.1e+02 Score=25.53 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=35.7
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCC---CCHHHHHHHHHhhhhhcCCceeecC
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGG---PNYQTGLAKMRALGEELGIPLEVYG 246 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G---~~~~~~~~~L~~~~~~~Gip~~~~~ 246 (266)
...+|-.=| ++|++++++++. .++-|+. |.-+ +...++.+.|+ ++||++....
T Consensus 90 TlePC~~Ca---~aIi~al~~~~g----I~rVV~~~~d~~~~~p~~~~g~~~L~----~aGI~V~~~~ 146 (190)
T 2nyt_A 90 SSSPCAACA---DRIIKTLSKTKN----LRLLILVGRLFMWEEPEIQAALKKLK----EAGCKLRIMK 146 (190)
T ss_pred EcChHHHHH---HHHHHhhhhcCC----ccEEEEEeecCCcCChHHHHHHHHHH----HCCCEEEEec
Confidence 445777777 999999988641 3333342 5443 34568999999 7799987543
No 194
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=26.31 E-value=2e+02 Score=21.40 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=60.4
Q ss_pred cCCCcEEEEecCchHHHHHHHHHHhcCCCCCC---------------CceeeccCCCCHHHHHHHHHHHHhhhccCCCCC
Q 024560 110 NPKGRIWTMVAGGGASVIYADTVGDLGYASEL---------------GNYAEYSGAPNEEEVLQYARVVIDCATADPDGR 174 (266)
Q Consensus 110 ~l~G~Igii~NGaGlam~t~D~l~~~g~gg~p---------------AN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~ 174 (266)
.+.++|.+++.|. .+......|... |.+. ..+--+-|+++.+..-+.+ . -.+.+
T Consensus 5 ~~~~~viIiG~G~-~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a----~----i~~ad 73 (140)
T 3fwz_A 5 DICNHALLVGYGR-VGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA----H----LECAK 73 (140)
T ss_dssp CCCSCEEEECCSH-HHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT----T----GGGCS
T ss_pred cCCCCEEEECcCH-HHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc----C----cccCC
Confidence 3578888887655 677777888887 3431 1122233444333221110 1 12344
Q ss_pred eEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHH
Q 024560 175 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 254 (266)
Q Consensus 175 ~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eA 254 (266)
.+++-++. +... .-++..+++.. ...++++|...+ +-.+.|+ ++|+...+ ....++
T Consensus 74 ~vi~~~~~-----~~~n---~~~~~~a~~~~-----~~~~iiar~~~~---~~~~~l~----~~G~d~vi----~p~~~~ 129 (140)
T 3fwz_A 74 WLILTIPN-----GYEA---GEIVASARAKN-----PDIEIIARAHYD---DEVAYIT----ERGANQVV----MGEREI 129 (140)
T ss_dssp EEEECCSC-----HHHH---HHHHHHHHHHC-----SSSEEEEEESSH---HHHHHHH----HTTCSEEE----EHHHHH
T ss_pred EEEEECCC-----hHHH---HHHHHHHHHHC-----CCCeEEEEECCH---HHHHHHH----HCCCCEEE----CchHHH
Confidence 44443332 2222 33444556552 356788888764 3456777 56987532 133445
Q ss_pred HHHHHHHh
Q 024560 255 CKQAIDCI 262 (266)
Q Consensus 255 v~~av~~~ 262 (266)
+....+..
T Consensus 130 a~~i~~~l 137 (140)
T 3fwz_A 130 ARTMLELL 137 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
No 195
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.30 E-value=2.8e+02 Score=23.04 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=45.1
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceee-ccCCCCHHHHHHHHHHHHhhhccC---CCCCeEEEEecc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAE-YSGAPNEEEVLQYARVVIDCATAD---PDGRKRALLIGG 182 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lD-lgG~a~~~~~~~al~~ll~~~~~d---~~v~~vlvni~g 182 (266)
.+|++++.-.+... -..+.+..+ |. -..+. ..++.+.+.-+++++-+|+. . |++++|+.
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--g~--~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~ai~~---- 197 (306)
T 2vk2_A 129 CNVVELQGTVGASVAIDRKKGFAEAIKNA--PN--IKIIRSQSGDFTRSKGKEVMESFIKA---ENNGKNICMVYA---- 197 (306)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHTTTC--TT--EEEEEEEECTTCHHHHHHHHHHHHHH---TTTTTTCCEEEE----
T ss_pred CeEEEEEcCCCChhHHHHHHHHHHHHhhC--CC--eEEEEeccCCCcHHHHHHHHHHHHHh---CCCCCCeeEEEE----
Confidence 57888865433221 123444444 22 12222 24556667667777666652 4 67888874
Q ss_pred cccchhHhhhhHHHHHHHHHHhh
Q 024560 183 GIANFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| .|+++++++.+
T Consensus 198 ---~nd~~A---~g~~~al~~~G 214 (306)
T 2vk2_A 198 ---HNDDMV---IGAIQAIKEAG 214 (306)
T ss_dssp ---SSHHHH---HHHHHHHHHTT
T ss_pred ---CCchHH---HHHHHHHHHcC
Confidence 257778 99999999874
No 196
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=26.24 E-value=3.2e+02 Score=23.74 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=64.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHH-----------HHHhhhccCCCCCeEEEEecc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYAR-----------VVIDCATADPDGRKRALLIGG 182 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~-----------~ll~~~~~d~~v~~vlvni~g 182 (266)
+||+|+.|. .+-..+..+....-+-+. -..-+.++++..+..+ -+++ ++++++|+|-.|.
T Consensus 15 rvgiiG~G~-~g~~~~~~l~~~~~~~~l----vav~d~~~~~~~~~~~~~~~~~~~~~~~ll~----~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 15 RFALVGCGR-IANNHFGALEKHADRAEL----IDVCDIDPAALKAAVERTGARGHASLTDMLA----QTDADIVILTTPS 85 (354)
T ss_dssp EEEEECCST-THHHHHHHHHHTTTTEEE----EEEECSSHHHHHHHHHHHCCEEESCHHHHHH----HCCCSEEEECSCG
T ss_pred eEEEEcCcH-HHHHHHHHHHhCCCCeEE----EEEEcCCHHHHHHHHHHcCCceeCCHHHHhc----CCCCCEEEECCCc
Confidence 689998874 333334566554101111 1122455665444332 2344 7899988876553
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~ 261 (266)
. .-+ +-+.++++ ..++|++ .=-..+.++++++.+. +++.|+.+.+ +...-...+++++.++
T Consensus 86 ~-----~h~---~~~~~al~--------~gk~v~~EKP~a~~~~~~~~l~~~-a~~~g~~~~v-~~~~r~~p~~~~~k~~ 147 (354)
T 3q2i_A 86 G-----LHP---TQSIECSE--------AGFHVMTEKPMATRWEDGLEMVKA-ADKAKKHLFV-VKQNRRNATLQLLKRA 147 (354)
T ss_dssp G-----GHH---HHHHHHHH--------TTCEEEECSSSCSSHHHHHHHHHH-HHHHTCCEEE-CCGGGGSHHHHHHHHH
T ss_pred H-----HHH---HHHHHHHH--------CCCCEEEeCCCcCCHHHHHHHHHH-HHHhCCeEEE-EEcccCCHHHHHHHHH
Confidence 2 112 33344443 2467777 5556688888887763 4456776532 1111233355555555
Q ss_pred hh
Q 024560 262 IM 263 (266)
Q Consensus 262 ~~ 263 (266)
.+
T Consensus 148 i~ 149 (354)
T 3q2i_A 148 MQ 149 (354)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 197
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=25.98 E-value=3.6e+02 Score=24.16 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=66.5
Q ss_pred ceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 143 NYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 143 N~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
-|++=.|..+.+.+.+-++.+++ .++++++++=.+|-...-...+ -+.+++. ... .++||++-.|++
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~-----~Gv~Gl~v~GtTGE~~~Ls~eE-r~~vi~~--~~~-----grvpViaGvg~~ 102 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIA-----DGMSAVVYCGSMGDWPLLTDEQ-RMEGVER--LVK-----AGIPVIVGTGAV 102 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-----TTCCCEEESSGGGTGGGSCHHH-HHHHHHH--HHH-----TTCCEEEECCCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-----cCCCEEEeCccCcChhhCCHHH-HHHHHHH--HhC-----CCCcEEEecCCC
Confidence 34444578899999999998886 5899999883222221111110 1345554 221 368999999999
Q ss_pred CHHHHHHHHHhhhhhcCCc------eeecCCCCCHHHHHHHHHHHhh
Q 024560 223 NYQTGLAKMRALGEELGIP------LEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 223 ~~~~~~~~L~~~~~~~Gip------~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+.+++.+..+.. +++|.. -+++. ..+.++.++.+-.++.
T Consensus 103 st~eai~la~~A-~~~Gadavlv~~P~y~~-~~s~~~l~~~f~~IA~ 147 (344)
T 2hmc_A 103 NTASAVAHAVHA-QKVGAKGLMVIPRVLSR-GSVIAAQKAHFKAILS 147 (344)
T ss_dssp SHHHHHHHHHHH-HHHTCSEEEECCCCSSS-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhcCCCEEEECCCccCC-CCCHHHHHHHHHHHHh
Confidence 989888877743 345632 12111 0367888888877776
No 198
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.77 E-value=30 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=26.2
Q ss_pred ccee--cCCceEEeeccccccCcccccCcccccc
Q 024560 44 PFTL--VNGEPYPLDMRGELDDTAAFKNFKKWAN 75 (266)
Q Consensus 44 PLvv--~~g~~~alD~k~~iDd~A~~R~~~~~~~ 75 (266)
+|+. ..|++++.++-+.+.++..-+.|| |..
T Consensus 21 ~lv~D~~~ge~vC~~CGlVl~e~~iD~gpE-WR~ 53 (58)
T 1dl6_A 21 ILVEDYRAGDMICPECGLVVGDRVIDVGSE-WRT 53 (58)
T ss_dssp CCEECSSSCCEECTTTCCEECCSCCCCCCS-CCC
T ss_pred ceeEeCCCCeEEeCCCCCEEeccccccCCc-ccc
Confidence 4555 568999999999999999999998 853
No 199
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=25.72 E-value=84 Score=23.82 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=42.6
Q ss_pred CeEEEE-ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceE----------------------EEEeCCCCHHHHHHH
Q 024560 174 RKRALL-IGGGIANFTDVATTFNGIIRALREKESKLKAARMHI----------------------FVRRGGPNYQTGLAK 230 (266)
Q Consensus 174 ~~vlvn-i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pv----------------------vvrl~G~~~~~~~~~ 230 (266)
+.+.|- .|.|++..=..| +++-++.++.+ ..+.| |+.-+....+ .+.
T Consensus 4 kivaVTaCptGiAhTymAa---eaL~~aA~~~G-----~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v~--~~R 73 (106)
T 2r4q_A 4 KILAVTACPTGIAHTFMAA---DALKEKAKELG-----VEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVE--MER 73 (106)
T ss_dssp CEEEEEECSCC--CHHHHH---HHHHHHHHHHT-----CCEEEEEEETTEEESCCCHHHHHHCSCEEEEESSCCC--CGG
T ss_pred eEEEEecCCCcHHHHHHHH---HHHHHHHHHCC-----CeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCccC--HhH
Confidence 345555 599999887777 88888887764 33333 4444444443 444
Q ss_pred HHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 231 MRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 231 L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
|. |.|++ ..+++++++..-++..
T Consensus 74 F~------GK~v~----~~~v~~ai~~p~~~l~ 96 (106)
T 2r4q_A 74 FK------GKRVL----QVPVTAGIRRPQELIE 96 (106)
T ss_dssp GT------TSBEE----EECHHHHHHCHHHHHH
T ss_pred cC------CCeEE----EeCHHHHHHCHHHHHH
Confidence 55 88875 4588888877665543
No 200
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=25.23 E-value=3.2e+02 Score=25.80 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=13.2
Q ss_pred ceeecCCCCCHHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAIDC 261 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~~ 261 (266)
|+.++. ..+++.|++.++.-
T Consensus 294 p~iV~~-dADl~~Aa~~i~~~ 313 (516)
T 1uzb_A 294 AIIVDE-TADFDLAAEGVVVS 313 (516)
T ss_dssp EEEECT-TSCHHHHHHHHHHH
T ss_pred ceeECC-CCCHHHHHHHHHHH
Confidence 455665 55788888877653
No 201
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=25.22 E-value=2.5e+02 Score=24.27 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
++++++|+|-.|... - ++-+.++++ ..++|++ .=-..+.++++++.+. +++.|+.+
T Consensus 64 ~~~vD~V~i~tp~~~-----H---~~~~~~al~--------~GkhVl~EKP~a~~~~e~~~l~~~-a~~~~~~~ 120 (334)
T 3ohs_X 64 DPNVEVAYVGTQHPQ-----H---KAAVMLCLA--------AGKAVLCEKPMGVNAAEVREMVTE-ARSRGLFL 120 (334)
T ss_dssp CTTCCEEEECCCGGG-----H---HHHHHHHHH--------TTCEEEEESSSSSSHHHHHHHHHH-HHHTTCCE
T ss_pred CCCCCEEEECCCcHH-----H---HHHHHHHHh--------cCCEEEEECCCCCCHHHHHHHHHH-HHHhCCEE
Confidence 899999987665431 1 244444443 2477887 5556788999888774 45567765
No 202
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=25.16 E-value=1e+02 Score=21.52 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHhCCceeeEeecce
Q 024560 6 CAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFT 46 (266)
Q Consensus 6 ~~~l~~gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLv 46 (266)
+..+..++.+..+......+..+|+.-.+.+. ++-||..
T Consensus 53 ~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~~~--i~~nP~~ 91 (111)
T 2kiw_A 53 VDDISAQYSKNYVDSIVASTNMIFKYAYDTRL--IKAMPSE 91 (111)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTS--CSCCTTT
T ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHHHHhCC--hhhCccc
Confidence 34455677888889999999999998888764 6889974
No 203
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=24.95 E-value=2.8e+02 Score=26.25 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN 223 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~ 223 (266)
+|.++.|. |.| ++.+. +.|.++..+.. .++|++.-+||.+
T Consensus 252 ~p~v~~V~---fTG---S~~~G---~~i~~~aa~~~-----~~~pv~lElGGk~ 291 (528)
T 3v4c_A 252 HPHIKAVG---FTG---SLAGG---RALFDLCAARP-----EPIPFFGELGSVN 291 (528)
T ss_dssp CTTCCEEE---EES---CHHHH---HHHHHHHHHSS-----SCCCEEEECCCCC
T ss_pred CCCCCEEE---EEC---ChHHH---HHHHHHHhhcc-----CCCceEEecCCCC
Confidence 88887554 444 33444 66666554431 1378888999976
No 204
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=24.81 E-value=2.1e+02 Score=26.13 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=37.5
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceee
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEV 244 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~ 244 (266)
++++++|+|-.|.. .-+ +-++++++ ..++|++ .=-..+.++++++.+. +++.|+.+.+
T Consensus 89 ~~~vD~V~i~tp~~-----~h~---~~~~~al~--------aGkhV~~EKP~a~~~~ea~~l~~~-a~~~g~~~~v 147 (444)
T 2ixa_A 89 DKNIDAVFVSSPWE-----WHH---EHGVAAMK--------AGKIVGMEVSGAITLEECWDYVKV-SEQTGVPLMA 147 (444)
T ss_dssp CTTCCEEEECCCGG-----GHH---HHHHHHHH--------TTCEEEECCCCCSSHHHHHHHHHH-HHHHCCCEEE
T ss_pred CCCCCEEEEcCCcH-----HHH---HHHHHHHH--------CCCeEEEeCCCcCCHHHHHHHHHH-HHHhCCeEEE
Confidence 78999988876533 112 44455554 2467777 5456788999888774 4566877543
No 205
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=24.64 E-value=3.1e+02 Score=23.65 Aligned_cols=62 Identities=16% Similarity=0.030 Sum_probs=38.7
Q ss_pred HHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcC
Q 024560 161 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELG 239 (266)
Q Consensus 161 ~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~G 239 (266)
+-+++ ++++++|+|-.|.. .-+ +-+..+++ ..++|++ .=-..+.++++++.+. +++.|
T Consensus 60 ~~ll~----~~~~D~V~i~tp~~-----~h~---~~~~~al~--------aGk~Vl~EKP~a~~~~e~~~l~~~-a~~~~ 118 (329)
T 3evn_A 60 EDMLA----DESIDVIYVATINQ-----DHY---KVAKAALL--------AGKHVLVEKPFTLTYDQANELFAL-AESCN 118 (329)
T ss_dssp HHHHT----CTTCCEEEECSCGG-----GHH---HHHHHHHH--------TTCEEEEESSCCSSHHHHHHHHHH-HHHTT
T ss_pred HHHhc----CCCCCEEEECCCcH-----HHH---HHHHHHHH--------CCCeEEEccCCcCCHHHHHHHHHH-HHHcC
Confidence 34466 89999888765532 222 43344443 2477887 5556788999888763 45668
Q ss_pred Ccee
Q 024560 240 IPLE 243 (266)
Q Consensus 240 ip~~ 243 (266)
+.+.
T Consensus 119 ~~~~ 122 (329)
T 3evn_A 119 LFLM 122 (329)
T ss_dssp CCEE
T ss_pred CEEE
Confidence 7653
No 206
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.31 E-value=46 Score=21.21 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=24.8
Q ss_pred ccee--cCCceEEeeccccccCcccccCccccc
Q 024560 44 PFTL--VNGEPYPLDMRGELDDTAAFKNFKKWA 74 (266)
Q Consensus 44 PLvv--~~g~~~alD~k~~iDd~A~~R~~~~~~ 74 (266)
+|+. ..|++++-++...+.++..-+.|+ |.
T Consensus 15 ~l~~d~~~gelvC~~CG~v~~e~~id~~~e-wr 46 (50)
T 1pft_A 15 ELIYDPERGEIVCAKCGYVIEENIIDMGPE-WR 46 (50)
T ss_dssp CEEEETTTTEEEESSSCCBCCCCCCCCCSS-SS
T ss_pred ceEEcCCCCeEECcccCCcccccccccCCc-cc
Confidence 4555 468899999999999999888888 74
No 207
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=24.11 E-value=2.4e+02 Score=23.95 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=36.1
Q ss_pred CCcEEEEecCchHHHHHHHHHHhcCCCCC-------CCceeeccCCCC--HHHHHHHHHHHHhhhccCCCCCeEEE
Q 024560 112 KGRIWTMVAGGGASVIYADTVGDLGYASE-------LGNYAEYSGAPN--EEEVLQYARVVIDCATADPDGRKRAL 178 (266)
Q Consensus 112 ~G~Igii~NGaGlam~t~D~l~~~g~gg~-------pAN~lDlgG~a~--~~~~~~al~~ll~~~~~d~~v~~vlv 178 (266)
+++||+++-.+-..=.+-+.+..+|...+ +...+++.++.. .+.+.++..-.+. +.++++|++
T Consensus 109 ~~rigVlaT~~t~~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~----~~gad~IVL 180 (245)
T 3qvl_A 109 ATRFSIVTTLPRTLIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALK----EDGSGAIVL 180 (245)
T ss_dssp CSCEEEEESCGGGHHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHH----HSCCSEEEE
T ss_pred CCEEEEEEcchhHHHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHH----hcCCCEEEE
Confidence 68999999988766566788888742111 122345655442 2333333333332 357887765
No 208
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=24.09 E-value=88 Score=22.87 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHH
Q 024560 195 NGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 232 (266)
Q Consensus 195 ~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~ 232 (266)
+.|++++++ ++||++=|.+-..+.|++++.
T Consensus 19 ~~I~d~Lr~--------~~~VvvNL~~ld~~~AqRivD 48 (87)
T 3p04_A 19 QVIGGAFRD--------GDAVVFDMSLLSREEARRIVD 48 (87)
T ss_dssp HHHHHHHHT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHC--------CCEEEEECCCCCHHHHHHHHH
Confidence 455566654 488999999999999999987
No 209
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=23.85 E-value=2.9e+02 Score=23.85 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=43.8
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCceeecCCC
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLEVYGPE 248 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~ 248 (266)
++++++|+|-.|.. .-+ +-+..+++ ..++|++ .=-..+.++++++.+. +++.|+.+.+ +..
T Consensus 65 ~~~~D~V~i~tp~~-----~h~---~~~~~al~--------~gk~vl~EKP~~~~~~e~~~l~~~-a~~~g~~~~v-~~~ 126 (330)
T 3e9m_A 65 DETIDIIYIPTYNQ-----GHY---SAAKLALS--------QGKPVLLEKPFTLNAAEAEELFAI-AQEQGVFLME-AQK 126 (330)
T ss_dssp CTTCSEEEECCCGG-----GHH---HHHHHHHH--------TTCCEEECSSCCSSHHHHHHHHHH-HHHTTCCEEE-CCS
T ss_pred CCCCCEEEEcCCCH-----HHH---HHHHHHHH--------CCCeEEEeCCCCCCHHHHHHHHHH-HHHcCCeEEE-EEh
Confidence 78999888765543 212 44444443 2467777 5556788999887763 4566876532 111
Q ss_pred CCHHHHHHHHHHHhh
Q 024560 249 ATMTGICKQAIDCIM 263 (266)
Q Consensus 249 ~~~~eAv~~av~~~~ 263 (266)
.-...+++++.++.+
T Consensus 127 ~r~~p~~~~~k~~i~ 141 (330)
T 3e9m_A 127 SVFLPITQKVKATIQ 141 (330)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHh
Confidence 223445555555543
No 210
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=23.62 E-value=2.1e+02 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhhcccceEEEEeCCCCHH---------HHHHHHHhhhhhcCCceeecCCCCCHHHHHHHH
Q 024560 195 NGIIRALREKESKLKAARMHIFVRRGGPNYQ---------TGLAKMRALGEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 195 ~gii~al~~~~~~~~~~~~pvvvrl~G~~~~---------~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
.++++.+++. .+|++ |++.+ ..+++|+ ++|||+--|..+++.+++.+.+
T Consensus 81 ~~~~~~l~~~-------Gi~~~----Gp~~~a~~~~~dK~~~k~~l~----~~GIptp~~~~~~~~~ea~~~~ 138 (431)
T 3mjf_A 81 IGVVDAFRAA-------GLAIF----GPTQAAAQLEGSKAFTKDFLA----RHNIPSAEYQNFTDVEAALAYV 138 (431)
T ss_dssp TTHHHHHHHT-------TCCEE----SCCHHHHHHHHCHHHHHHHHH----HTTCSBCCEEEESCHHHHHHHH
T ss_pred HHHHHHHHhc-------CCCee----CCCHHHHHHhhCHHHHHHHHH----HcCCCCCCeEeeCCHHHHHHHH
Confidence 5667777664 35655 33333 3344555 7799874443456888876544
No 211
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=23.62 E-value=2.4e+02 Score=24.86 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=55.8
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHH----------HHHHHhhhccCCCCCeEEEEeccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY----------ARVVIDCATADPDGRKRALLIGGG 183 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~a----------l~~ll~~~~~d~~v~~vlvni~gg 183 (266)
+||+|+.|. .+-.-...+.... +-+..-. -+.++++...+ ++-+++ ++++++|+|-.|..
T Consensus 7 ~vgiiG~G~-~g~~~~~~l~~~~-~~~l~av----~d~~~~~~~~a~~~g~~~~~~~~~ll~----~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 7 QLVIVGYGG-MGSYHVTLASAAD-NLEVHGV----FDILAEKREAAAQKGLKIYESYEAVLA----DEKVDAVLIATPND 76 (359)
T ss_dssp EEEEECCSH-HHHHHHHHHHTST-TEEEEEE----ECSSHHHHHHHHTTTCCBCSCHHHHHH----CTTCCEEEECSCGG
T ss_pred cEEEECcCH-HHHHHHHHHHhCC-CcEEEEE----EcCCHHHHHHHHhcCCceeCCHHHHhc----CCCCCEEEEcCCcH
Confidence 688887764 3333344555441 1121111 13344443322 233455 89999888765532
Q ss_pred ccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCcee
Q 024560 184 IANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPLE 243 (266)
Q Consensus 184 i~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~~ 243 (266)
.-+ +-+.++++ ..++|++ .=-..+.++++++++. +++.|+.+.
T Consensus 77 -----~h~---~~~~~al~--------aGkhVl~EKP~a~~~~ea~~l~~~-a~~~g~~~~ 120 (359)
T 3e18_A 77 -----SHK---ELAISALE--------AGKHVVCEKPVTMTSEDLLAIMDV-AKRVNKHFM 120 (359)
T ss_dssp -----GHH---HHHHHHHH--------TTCEEEEESSCCSSHHHHHHHHHH-HHHHTCCEE
T ss_pred -----HHH---HHHHHHHH--------CCCCEEeeCCCcCCHHHHHHHHHH-HHHhCCeEE
Confidence 112 44444443 2467777 5446688999888774 456687653
No 212
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=23.22 E-value=2.2e+02 Score=25.13 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
++++++|+|-.|.. .-+ +-+..+++ ..++|++ .=-..+.++++++.+. +++.|+.+
T Consensus 85 ~~~~D~V~i~tp~~-----~h~---~~~~~al~--------aGk~Vl~EKPla~~~~e~~~l~~~-a~~~g~~~ 141 (357)
T 3ec7_A 85 DKDVEVVIITASNE-----AHA---DVAVAALN--------ANKYVFCEKPLAVTAADCQRVIEA-EQKNGKRM 141 (357)
T ss_dssp CTTCCEEEECSCGG-----GHH---HHHHHHHH--------TTCEEEEESSSCSSHHHHHHHHHH-HHHHTSCC
T ss_pred CCCCCEEEEcCCcH-----HHH---HHHHHHHH--------CCCCEEeecCccCCHHHHHHHHHH-HHHhCCeE
Confidence 78999888765532 112 44444443 2477887 5557788999888874 45568765
No 213
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=23.19 E-value=1.9e+02 Score=24.03 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhccCCCCCe--EEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHH
Q 024560 154 EEVLQYARVVIDCATADPDGRK--RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 231 (266)
Q Consensus 154 ~~~~~al~~ll~~~~~d~~v~~--vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L 231 (266)
+.+...+..+-+ ++..+. +.||.|||-... + .+|.+.++.. +.||++...|--+-.|-=++
T Consensus 42 ~~i~~~L~~l~~----~~~~~~I~l~InSPGG~v~~---~---~~I~~~i~~~-------~~~V~t~~~G~AaSag~~i~ 104 (203)
T 3qwd_A 42 NSIVSQLLFLQA----QDSEKDIYLYINSPGGSVTA---G---FAIYDTIQHI-------KPDVQTICIGMAASMGSFLL 104 (203)
T ss_dssp HHHHHHHHHHHH----HCSSSCEEEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHh----cCCCCCEEEEEeCCCCCHHH---H---HHHHHHHHHh-------cCCcEEEEeeeehhHHHHHH
Confidence 344444444433 444554 445679986422 2 6777777765 47788766665444444444
Q ss_pred H
Q 024560 232 R 232 (266)
Q Consensus 232 ~ 232 (266)
.
T Consensus 105 ~ 105 (203)
T 3qwd_A 105 A 105 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=23.15 E-value=1.2e+02 Score=24.51 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=63.7
Q ss_pred cEEEEecCc------hHHHHHHHHHHhcCCCCCCCc--eeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEE-e--cc
Q 024560 114 RIWTMVAGG------GASVIYADTVGDLGYASELGN--YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALL-I--GG 182 (266)
Q Consensus 114 ~Igii~NGa------Glam~t~D~l~~~g~gg~pAN--~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvn-i--~g 182 (266)
||||+..-- .+---+.|.|..+ |.+..| -+.+.|.- .+.-+.+.+.+ ..+.++|+.. . =|
T Consensus 12 ri~IV~arfn~~I~~~Ll~gA~~~l~~~--gv~~~~i~v~~VPGaf---EiP~aa~~la~----~~~yDavIaLG~VIrG 82 (158)
T 1di0_A 12 KIAFIQARWHADIVDEARKSFVAELAAK--TGGSVEVEIFDVPGAY---EIPLHAKTLAR----TGRYAAIVGAAFVIDG 82 (158)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHH--HTTSEEEEEEEESSGG---GHHHHHHHHHH----TSCCSEEEEEEECCCC
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHc--CCCccceEEEECCcHH---HHHHHHHHHHh----cCCCCEEEEeeccccC
Confidence 577765432 4555578999998 555443 23444533 25555566666 6789999888 3 48
Q ss_pred cccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHH
Q 024560 183 GIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQT 226 (266)
Q Consensus 183 gi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~ 226 (266)
+...++-|+ +.+.+.+-+..- ...+||.- -|.-.+.++
T Consensus 83 ~T~Hfd~Va---~~vs~Gl~~v~L---~~~vPV~~GVLT~~~~eq 121 (158)
T 1di0_A 83 GIYDHDFVA---TAVINGMMQVQL---ETEVPVLSVVLTPHHFHE 121 (158)
T ss_dssp SSBCCHHHH---HHHHHHHHHHHH---HHCCCEEEEEECBSSCCC
T ss_pred CCcHHHHHH---HHHHHHHHHHHh---hcCCCEEEEecCCCCHHH
Confidence 999999988 777777766542 25799885 566555553
No 215
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=23.06 E-value=3.1e+02 Score=22.32 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred CcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
++|++++.-.+... -..+.+..+ |-++- . ..-++.+.+.-+++++-+|+ +.|.+++||. .
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~--g~~~~-~-~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 189 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAH--KFNVL-A-SQPADFDRIKGLNVMQNLLT---AHPDVQAVFA-------Q 189 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHH--TCEEE-E-EEECTTCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcC--CCEEE-E-ecCCCCCHHHHHHHHHHHHH---hCCCccEEEE-------C
Confidence 57888864322221 134666666 33221 1 12355667766677666665 2677888874 3
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
+|.+| -|+++++++.+. .++.|+ -..+ ...+...+.. +-+.... ..++.+..+.++++.
T Consensus 190 nD~~A---~g~~~al~~~g~----~dv~vv-GfD~--~~~~~~~~~~-----~p~lttv--~~~~~~~g~~a~~~l 248 (271)
T 2dri_A 190 NDEMA---LGALRALQTAGK----SDVMVV-GFDG--TPDGEKAVND-----GKLAATI--AQLPDQIGAKGVETA 248 (271)
T ss_dssp SHHHH---HHHHHHHHHHTC----CSCEEE-EEEC--CHHHHHHHHT-----TSSCEEE--ECCHHHHHHHHHHHH
T ss_pred CCcHH---HHHHHHHHHcCC----CCcEEE-EecC--CHHHHHHHHc-----CCcEEEE--ecCHHHHHHHHHHHH
Confidence 78888 999999998752 234443 3333 4555555541 3222111 336777666666554
No 216
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.58 E-value=3e+02 Score=23.34 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCcEEEEecCc-----hHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 112 KGRIWTMVAGG-----GASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 112 ~G~Igii~NGa-----Glam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
.++|-+.+-++ |+-|+ ..++...| -.-+++|-+.+++.+.++.+-. ++++|.+-.. .+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iv-a~~L~~~G-----~~Vi~LG~~vp~e~l~~~~~~~--------~~d~V~lS~l--~~~ 186 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIV-TALLRANG-----YNVVDLGRDVPAEEVLAAVQKE--------KPIMLTGTAL--MTT 186 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHH-HHHHHHTT-----CEEEEEEEECCSHHHHHHHHHH--------CCSEEEEECC--CTT
T ss_pred CCeEEEEeCCCCccHHHHHHH-HHHHHHCC-----CEEEECCCCCCHHHHHHHHHHc--------CCCEEEEEee--ccC
Confidence 45554444432 55554 35666663 3456889888988887774332 3455665432 222
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
...-. +.+++.+++.. .+.| +.+||.-..+ +.-. +.|...+ ..+..++++.+.++.+
T Consensus 187 ~~~~~---~~~i~~l~~~~-----~~~~--v~vGG~~~~~--~~~~----~igad~~----~~da~~av~~~~~l~~ 243 (258)
T 2i2x_B 187 TMYAF---KEVNDMLLENG-----IKIP--FACGGGAVNQ--DFVS----QFALGVY----GEEAADAPKIADAIIA 243 (258)
T ss_dssp TTTHH---HHHHHHHHTTT-----CCCC--EEEESTTCCH--HHHH----TSTTEEE----CSSTTHHHHHHHHHHT
T ss_pred CHHHH---HHHHHHHHhcC-----CCCc--EEEECccCCH--HHHH----HcCCeEE----ECCHHHHHHHHHHHHc
Confidence 22222 66777777642 3444 4456654332 1222 4464443 3588889888877764
No 217
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=22.58 E-value=1.6e+02 Score=27.72 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=20.1
Q ss_pred cCCCcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCC
Q 024560 110 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP 151 (266)
Q Consensus 110 ~l~G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a 151 (266)
.+-|=+++|+----+.++++.-+.-+ -..+|.+-+-...
T Consensus 158 ~P~GVV~~I~PwN~P~~~~~~~~a~A---LaaGN~VVlKps~ 196 (495)
T 1wnd_A 158 DPLGVVASIAPWNYPLMMAAWKLAPA---LAAGNCVVLKPSE 196 (495)
T ss_dssp EECSEEEEECCSSSHHHHHHHHHHHH---HHTTCEEEEECCT
T ss_pred ecCCeEEEECCCcchHHHHHHHHHHH---HHcCCeeEeeCCC
Confidence 35688888876665544444333222 1234555554433
No 218
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=22.37 E-value=35 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=41.3
Q ss_pred cCchHHHHHHHHHHhcCCCCCCCceeecc-CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc---hhHhhhhHH
Q 024560 120 AGGGASVIYADTVGDLGYASELGNYAEYS-GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN---FTDVATTFN 195 (266)
Q Consensus 120 NGaGlam~t~D~l~~~g~gg~pAN~lDlg-G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~---~~~vA~~~~ 195 (266)
.|.|.++.++++|... --.+.-|+-.. |=.+++..++++++ +.++|+|+ ++|++ ...++ +
T Consensus 167 IGsG~Gi~~~~lI~~I--~e~~~vPVI~eGGI~TPsDAa~AmeL---------GAdgVlVg--SAI~~a~dP~~ma---~ 230 (265)
T 1wv2_A 167 IGSGLGICNPYNLRII--LEEAKVPVLVDAGVGTASDAAIAMEL---------GCEAVLMN--TAIAHAKDPVMMA---E 230 (265)
T ss_dssp TTCCCCCSCHHHHHHH--HHHCSSCBEEESCCCSHHHHHHHHHH---------TCSEEEES--HHHHTSSSHHHHH---H
T ss_pred CCCCCCcCCHHHHHHH--HhcCCCCEEEeCCCCCHHHHHHHHHc---------CCCEEEEC--hHHhCCCCHHHHH---H
Confidence 4666666566666544 11234455555 44678888888554 45689988 44444 66667 7
Q ss_pred HHHHHHH
Q 024560 196 GIIRALR 202 (266)
Q Consensus 196 gii~al~ 202 (266)
.++++++
T Consensus 231 af~~Av~ 237 (265)
T 1wv2_A 231 AMKHAIV 237 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 219
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=22.35 E-value=1.6e+02 Score=20.60 Aligned_cols=82 Identities=9% Similarity=0.088 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHh
Q 024560 154 EEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRA 233 (266)
Q Consensus 154 ~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~ 233 (266)
+.+.+.+.-.+. +...+.++++ ++++...|..+ ...+.+..++... ....+ ++.|.+ ..-+++|+
T Consensus 29 ~~l~~~l~~~~~----~~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~- 93 (110)
T 1sbo_A 29 SELKEQLRNFIS----TTSKKKIVLD-LSSVSYMDSAG--LGTLVVILKDAKI----NGKEF--ILSSLK-ESISRILK- 93 (110)
T ss_dssp THHHHHHHTHHH----HCSCSEEEEE-CTTCCCBCHHH--HHHHHHHHHHHHH----TTCEE--EEESCC-HHHHHHHH-
T ss_pred HHHHHHHHHHHh----cCCCcEEEEE-CCCCcEEccHH--HHHHHHHHHHHHH----cCCEE--EEEeCC-HHHHHHHH-
Confidence 345555544443 3333556555 57777777655 2555555554432 23343 445554 46778888
Q ss_pred hhhhcCCceeecCCCCCHHHH
Q 024560 234 LGEELGIPLEVYGPEATMTGI 254 (266)
Q Consensus 234 ~~~~~Gip~~~~~~~~~~~eA 254 (266)
.+|+.- .|+.+.+.++|
T Consensus 94 ---~~gl~~-~~~i~~~~~~A 110 (110)
T 1sbo_A 94 ---LTHLDK-IFKITDTVEEA 110 (110)
T ss_dssp ---HTTCGG-GSCBCSSGGGC
T ss_pred ---HhCccc-eeeccCCcccC
Confidence 557652 23335566553
No 220
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=22.33 E-value=3.5e+02 Score=24.70 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.7
Q ss_pred eeccC---CCCHHHHHHHHHHHHhhh---ccCCCC--CeEEE--E--eccc---ccchhHhhhhHHHHHHHHHHhhhhhh
Q 024560 145 AEYSG---APNEEEVLQYARVVIDCA---TADPDG--RKRAL--L--IGGG---IANFTDVATTFNGIIRALREKESKLK 209 (266)
Q Consensus 145 lDlgG---~a~~~~~~~al~~ll~~~---~~d~~v--~~vlv--n--i~gg---i~~~~~vA~~~~gii~al~~~~~~~~ 209 (266)
+++-| +-+-++-.+..+-+|..+ +.|.+| .+.|+ | ++|. -.+.++|| .+-+.+|+...
T Consensus 185 Vl~dG~~~dHdi~~c~~Vte~VL~~v~kaL~dh~V~LEG~lLKPnMV~pG~~~~k~s~eevA---~~Tv~~L~rtV---- 257 (347)
T 3mmt_A 185 VLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKDARIASVEEVA---EKTVHVLKQTV---- 257 (347)
T ss_dssp ECSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCSCCCTTSCCCCHHHHH---HHHHHHHHHHS----
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccccCCCCCCcCCHHHHH---HHHHHHHHhhC----
Confidence 44556 778777666666655321 112222 22222 2 3554 34678999 99999998765
Q ss_pred cccceEEEEe-CCCCHHHHHHHHHhh
Q 024560 210 AARMHIFVRR-GGPNYQTGLAKMRAL 234 (266)
Q Consensus 210 ~~~~pvvvrl-~G~~~~~~~~~L~~~ 234 (266)
+.-+|=++.| ||-+++++-..|+..
T Consensus 258 P~avpGI~FLSGGqSeeeAt~nLnAm 283 (347)
T 3mmt_A 258 PAAVPGIAFLSGGQTDEEATAHLSAM 283 (347)
T ss_dssp CTTSCEEEECCTTCCHHHHHHHHHHH
T ss_pred CcccCcceecCCCCCHHHHHHHHHHH
Confidence 3568877766 566788888888743
No 221
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=22.33 E-value=1.1e+02 Score=21.58 Aligned_cols=39 Identities=5% Similarity=-0.089 Sum_probs=30.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHhCCceeeEeecce
Q 024560 6 CAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFT 46 (266)
Q Consensus 6 ~~~l~~gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLv 46 (266)
+..+.+++.+..+..+..++..+|+.-++.+. ++-||..
T Consensus 60 ~~~l~~~~s~~t~~~~~~~l~~i~~~Av~~g~--i~~NP~~ 98 (112)
T 3lys_A 60 LNKFAETHAKASTKGFHTRVRASIQCLIEEGR--LQKDFTT 98 (112)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTS--CSSCTTS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHCCC--cccCccc
Confidence 34555677778888999999999999888765 7889974
No 222
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=22.29 E-value=98 Score=21.45 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHhCCceeeEeecce
Q 024560 7 APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFT 46 (266)
Q Consensus 7 ~~l~~gl~~~~~~~~~~ii~~Ly~~f~~~D~~l~EINPLv 46 (266)
..+..++.+..++.....+..+|+.-.+.+. ++-||..
T Consensus 57 ~~l~~~~s~~t~~~~~~~l~~~~~~a~~~~~--i~~NP~~ 94 (110)
T 2khq_A 57 NEYGLTHSYETIRKLNSYIRNAFDDAIHEGY--VIKNPTY 94 (110)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHTTC--CCCCGGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCCC--cccCccc
Confidence 3444567778888899999999998888764 6889974
No 223
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=22.08 E-value=2.4e+02 Score=24.88 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 170 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 170 d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
++++++|+|-.|... -- +-+.++++ ..++|++ .=-..+.++++++++. ++++|+.+
T Consensus 81 ~~~iD~V~i~tp~~~--h~------~~~~~al~--------~Gk~V~~EKP~a~~~~~~~~l~~~-a~~~~~~~ 137 (383)
T 3oqb_A 81 DKNDTMFFDAATTQA--RP------GLLTQAIN--------AGKHVYCEKPIATNFEEALEVVKL-ANSKGVKH 137 (383)
T ss_dssp CSSCCEEEECSCSSS--SH------HHHHHHHT--------TTCEEEECSCSCSSHHHHHHHHHH-HHHTTCCE
T ss_pred CCCCCEEEECCCchH--HH------HHHHHHHH--------CCCeEEEcCCCCCCHHHHHHHHHH-HHHcCCeE
Confidence 899998886554421 11 33344443 3477887 5556688999888874 45668764
No 224
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.06 E-value=3.7e+02 Score=22.86 Aligned_cols=68 Identities=6% Similarity=0.090 Sum_probs=40.5
Q ss_pred cCCCcEEEEecC-chHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchh
Q 024560 110 NPKGRIWTMVAG-GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFT 188 (266)
Q Consensus 110 ~l~G~Igii~NG-aGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~ 188 (266)
+|.|++++|+.| .|++..+.-.+... |.+. + .-+-+.++..+..+-+-+ .+.++.. +..=+++.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~--Ga~V---v--i~~~~~~~~~~~~~~l~~-----~g~~~~~--~~~Dv~~~~ 71 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAA--GARV---I--LNDIRATLLAESVDTLTR-----KGYDAHG--VAFDVTDEL 71 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHT--TCEE---E--ECCSCHHHHHHHHHHHHH-----TTCCEEE--CCCCTTCHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCEE---E--EEECCHHHHHHHHHHHHh-----cCCcEEE--EEeeCCCHH
Confidence 578999999766 47899999999888 4442 1 122355666666555543 2333332 234455555
Q ss_pred Hhh
Q 024560 189 DVA 191 (266)
Q Consensus 189 ~vA 191 (266)
++.
T Consensus 72 ~v~ 74 (255)
T 4g81_D 72 AIE 74 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 225
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=21.95 E-value=33 Score=20.44 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=18.1
Q ss_pred hHHHHHcCCChhHHHHHHHHHHHHHH
Q 024560 5 ACAPLIATLPLEFRGKIGDFIMGVFA 30 (266)
Q Consensus 5 ~~~~l~~gl~~~~~~~~~~ii~~Ly~ 30 (266)
..+++....+....+-+.+++.+||+
T Consensus 3 daER~Ad~qse~vKk~vfdtLk~~Y~ 28 (31)
T 1qey_A 3 DAERLADEQSELVKKMVFDTLKDLYK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556555556667778888888886
No 226
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=21.84 E-value=2.2e+02 Score=24.59 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=37.3
Q ss_pred eccCCCCHHHHHHHHHHHHhhhccCCCCC---eEEEEeccccc--------chhHhhhhHHHHHHHHHHhhhhhhcccce
Q 024560 146 EYSGAPNEEEVLQYARVVIDCATADPDGR---KRALLIGGGIA--------NFTDVATTFNGIIRALREKESKLKAARMH 214 (266)
Q Consensus 146 DlgG~a~~~~~~~al~~ll~~~~~d~~v~---~vlvni~ggi~--------~~~~vA~~~~gii~al~~~~~~~~~~~~p 214 (266)
.++| .+.+.+.++++.+.+ -..+ +|-+|+..-.+ +.+. . .-+++++++. .++|
T Consensus 99 ~i~g-~~~~~~~~~a~~~~~-----~g~d~~~~iein~~~P~~~g~~~~g~~~~~-~---~~ii~~vr~~------~~~P 162 (314)
T 2e6f_A 99 SISG-LSVEENVAMVRRLAP-----VAQEKGVLLELNLSCPNVPGKPQVAYDFEA-M---RTYLQQVSLA------YGLP 162 (314)
T ss_dssp EECC-SSHHHHHHHHHHHHH-----HHHHHCCEEEEECCCCCSTTCCCGGGSHHH-H---HHHHHHHHHH------HCSC
T ss_pred EeCC-CCHHHHHHHHHHHHH-----hCCCcCceEEEEcCCCCCCCchhhcCCHHH-H---HHHHHHHHHh------cCCC
Confidence 3454 567889999888865 2467 78888531111 1222 1 3455666654 3689
Q ss_pred EEEEeCCC
Q 024560 215 IFVRRGGP 222 (266)
Q Consensus 215 vvvrl~G~ 222 (266)
|++++...
T Consensus 163 v~vK~~~~ 170 (314)
T 2e6f_A 163 FGVKMPPY 170 (314)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99988765
No 227
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.81 E-value=3.4e+02 Score=22.34 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=65.5
Q ss_pred CcEEEEecCchHHHH------HHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 024560 113 GRIWTMVAGGGASVI------YADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 113 G~Igii~NGaGlam~------t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~ 186 (266)
++|++++.-.+.... ..+.+..+. |-++ .. ...++.+.+.-+++++-+|+ ..|++++||. .
T Consensus 134 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~-g~~~-~~-~~~~~~~~~~~~~~~~~ll~---~~~~~~ai~~-------~ 200 (288)
T 1gud_A 134 GEVAIIEGKAGNASGEARRNGATEAFKKAS-QIKL-VA-SQPADWDRIKALDVATNVLQ---RNPNIKAIYC-------A 200 (288)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHHTCT-TEEE-EE-EEECTTCHHHHHHHHHHHHH---HCTTCCEEEE-------S
T ss_pred CEEEEEeCCCCCchHhHHHHHHHHHHHhCC-CcEE-EE-eecCCccHHHHHHHHHHHHH---hCCCceEEEE-------C
Confidence 579998744332211 234554431 1111 11 12456667777777776665 2677888884 3
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
+|.+| -|+++++++.+.+ .++. |+-..+ ...++..+.. -.+-+.+ ..++.+..+.+++++
T Consensus 201 nD~~A---~g~~~al~~~G~~---~dv~-vvGfD~--~~~~~~~~~~----p~~lttv---~q~~~~~g~~a~~~l 260 (288)
T 1gud_A 201 NDTMA---MGVAQAVANAGKT---GKVL-VVGTDG--IPEARKMVEA----GQMTATV---AQNPADIGATGLKLM 260 (288)
T ss_dssp SHHHH---HHHHHHHHHTTCT---TTSE-EEEESC--CHHHHHHHHH----TSSCEEE---ECCHHHHHHHHHHHH
T ss_pred CCchH---HHHHHHHHhcCCC---CCeE-EEEeCC--CHHHHHHHHc----CccEEEE---EcCHHHHHHHHHHHH
Confidence 78888 9999999987521 2333 334444 4555544441 1211222 337777666666554
No 228
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=21.77 E-value=3.5e+02 Score=25.19 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=22.3
Q ss_pred eeccCCCC----HHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 024560 145 AEYSGAPN----EEEVLQYARVVIDCATADPDGRKRALLI 180 (266)
Q Consensus 145 lDlgG~a~----~~~~~~al~~ll~~~~~d~~v~~vlvni 180 (266)
+.+|++.+ .+.|.++++.+-. ..+.+-||+
T Consensus 186 vnIg~nk~t~~~~~Dy~~~a~~l~~------~ad~ieiNi 219 (415)
T 3i65_A 186 VSIGKNKDTVNIVDDLKYCINKIGR------YADYIAINV 219 (415)
T ss_dssp EEECCCTTCSCHHHHHHHHHHHHGG------GCSEEEEEC
T ss_pred EEeccccCccccHHHHHHHHHHHHh------hCCEEEEEC
Confidence 46777763 6778888888743 478999996
No 229
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=21.52 E-value=87 Score=23.72 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred CeEEEE-ecccccchhHhhhhHHHHHHHHHHhhhhhhcccceE----------------------EEEeCCCCHHHHHHH
Q 024560 174 RKRALL-IGGGIANFTDVATTFNGIIRALREKESKLKAARMHI----------------------FVRRGGPNYQTGLAK 230 (266)
Q Consensus 174 ~~vlvn-i~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pv----------------------vvrl~G~~~~~~~~~ 230 (266)
+.+.|- .|.|++..=..| +++-++.++.+ ..+.| |+.-+....+ .+.
T Consensus 4 kivaVTaCptGiAhTymAa---eaL~~aA~~~G-----~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v~--~~R 73 (106)
T 2r48_A 4 KLLAITSCPNGIAHTYMAA---ENLQKAADRLG-----VSIKVETQGGIGVENKLTEEEIREADAIIIAADRSVN--KDR 73 (106)
T ss_dssp EEEEEEECSSCSHHHHHHH---HHHHHHHHHHT-----CEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCCC--CGG
T ss_pred eEEEEecCCCcHHHHHHHH---HHHHHHHHHCC-----CeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCccC--HhH
Confidence 345555 589998776666 88888877764 22222 4455554443 445
Q ss_pred HHhhhhhcCCceeecCCCCCHHHHHHHHHHHhh
Q 024560 231 MRALGEELGIPLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 231 L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~~ 263 (266)
|. |.|++ ..+++++++..-++..
T Consensus 74 F~------GK~v~----~~~v~~ai~~p~~~l~ 96 (106)
T 2r48_A 74 FI------GKKLL----SVGVQDGIRKPEELIQ 96 (106)
T ss_dssp GT------TSBEE----EECHHHHHHCHHHHHH
T ss_pred cC------CCeEE----EeCHHHHHHCHHHHHH
Confidence 55 88875 4588888876655543
No 230
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=21.50 E-value=59 Score=28.84 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=29.6
Q ss_pred ceeecc-CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccc---hhHhhhhHHHHHHHHHH
Q 024560 143 NYAEYS-GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIAN---FTDVATTFNGIIRALRE 203 (266)
Q Consensus 143 N~lDlg-G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~---~~~vA~~~~gii~al~~ 203 (266)
.|+-.+ |=.+++..+.++++ +.++|||| ++|++ ...++ ++++++++.
T Consensus 179 vPVI~~GGI~tpsDAa~AmeL---------GAdgVlVg--SAI~~a~dP~~ma---~af~~Av~a 229 (268)
T 2htm_A 179 PPVVVDAGLGLPSHAAEVMEL---------GLDAVLVN--TAIAEAQDPPAMA---EAFRLAVEA 229 (268)
T ss_dssp SCBEEESCCCSHHHHHHHHHT---------TCCEEEES--HHHHTSSSHHHHH---HHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHc---------CCCEEEEC--hHHhCCCCHHHHH---HHHHHHHHH
Confidence 344444 44678888888443 56689998 44444 55666 777777653
No 231
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=21.49 E-value=3.3e+02 Score=25.42 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCC---HH
Q 024560 149 GAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPN---YQ 225 (266)
Q Consensus 149 G~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~---~~ 225 (266)
+.-+|+.+..+++.+-+. -+.-+ ++.++|+...-+. +.+.+.+.+. .+.-+++...++. .+
T Consensus 352 ~AHNp~a~~a~l~~l~~~---~~~~~--~i~V~G~~~dkd~-----~~~~~~l~~~------~d~vilt~~~~~r~~~~~ 415 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHE---FDFRF--LVGVLSVLGDKDV-----DGILAALEPV------FDSVVVTHNGSPRALDVE 415 (487)
T ss_dssp CCCSHHHHHHHHHHHHHS---CCCSE--EEEEECCBTTBCH-----HHHHHHHTTT------CSEEEECCCSCTTBCCHH
T ss_pred CCCCHHHHHHHHHHHHHh---cCCCC--EEEEEEecCCCCH-----HHHHHHHHhh------CCEEEEeCCCCcCCCCHH
Confidence 446888888888887541 12222 3335666544332 4555544332 2221222333333 22
Q ss_pred HHHHHHHhhhhhcCC-ceeecCCCCCHHHHHHHHHHHhh
Q 024560 226 TGLAKMRALGEELGI-PLEVYGPEATMTGICKQAIDCIM 263 (266)
Q Consensus 226 ~~~~~L~~~~~~~Gi-p~~~~~~~~~~~eAv~~av~~~~ 263 (266)
+-.+++++ ..+. ++++ +.++++|++.+++.++
T Consensus 416 ~l~~~~~~---~~~~~~~~~---~~~~~~Ai~~a~~~a~ 448 (487)
T 2vos_A 416 ALALAAGE---RFGPDRVRT---AENLRDAIDVATSLVD 448 (487)
T ss_dssp HHHHHHHH---HHCGGGEEE---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hcCCCceEe---cCCHHHHHHHHHHhcc
Confidence 33333331 1132 3444 4599999999998875
No 232
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=21.45 E-value=1.7e+02 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=11.6
Q ss_pred ceeecCCCCCHHHHHHHHHH
Q 024560 241 PLEVYGPEATMTGICKQAID 260 (266)
Q Consensus 241 p~~~~~~~~~~~eAv~~av~ 260 (266)
|+.++. ..+++.|++.++.
T Consensus 264 p~iV~~-dADl~~Aa~~i~~ 282 (487)
T 2w8n_A 264 PFIVFD-SANVDQAVAGAMA 282 (487)
T ss_dssp EEEECT-TSCHHHHHHHHHH
T ss_pred eEEECC-CCCHHHHHHHHHH
Confidence 445554 4577777776654
No 233
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.41 E-value=1.8e+02 Score=23.89 Aligned_cols=119 Identities=7% Similarity=-0.058 Sum_probs=60.0
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCC--CCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHh
Q 024560 113 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGA--PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDV 190 (266)
Q Consensus 113 G~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~--a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~v 190 (266)
.+|++++...+-.....+.+.-+--.-+-...+.+.+. .+.+.+..+.+.+. ..|++++|+. .++.+
T Consensus 124 ~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ai~~-------~~d~~ 192 (276)
T 3jy6_A 124 QHVVVLTSELELSRTRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLIT----QNDQKTVAFA-------LKERW 192 (276)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHH----SSSSCEEEEE-------SSHHH
T ss_pred CeEEEEecCCCCCchHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHh----cCCCCcEEEE-------eCcHH
Confidence 56888876554122222332211000111111333332 33444555555543 3788888874 36788
Q ss_pred hhhHHHHHHHHHHhhhhhhcccce--E-EEEeCCCCHHHHHHHHHhhhhhcCCceeecCCCCCHHHHHHHHHHHh
Q 024560 191 ATTFNGIIRALREKESKLKAARMH--I-FVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262 (266)
Q Consensus 191 A~~~~gii~al~~~~~~~~~~~~p--v-vvrl~G~~~~~~~~~L~~~~~~~Gip~~~~~~~~~~~eAv~~av~~~ 262 (266)
| .|+++++++.+ .++| | |+-..+... + +.+. -++.+. ..++++..+.++++.
T Consensus 193 a---~g~~~al~~~g-----~~vP~di~vig~d~~~~--~-~~~~-----p~lttv----~~~~~~~g~~av~~l 247 (276)
T 3jy6_A 193 L---LEFFPNLIISG-----LIDNQTVTATGFADTDF--I-RRME-----PKLTLI----TQNPFLMGASSAEIM 247 (276)
T ss_dssp H---HHHSHHHHHSS-----SCCSSSEEEEEBCCCST--T-TCC-------CCCEE----ECCHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHcC-----CCCCCcEEEEEECChHH--h-hcCC-----CceEEE----EeCHHHHHHHHHHHH
Confidence 8 99999999875 3334 3 345555431 1 1111 134332 347788777777764
No 234
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=21.40 E-value=3.6e+02 Score=22.55 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCC-------ceeecCC
Q 024560 176 RALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGI-------PLEVYGP 247 (266)
Q Consensus 176 vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gi-------p~~~~~~ 247 (266)
.||.+|||+-.-+++. +.+. +.+.. .+++||++ -..|- .+.-.+.|+... +.|. -+++
T Consensus 108 a~I~lpGG~GTLdElf---E~lt--~~qlg----~~~kPvvll~~~gf-w~~l~~~l~~~~-~~Gfi~~~~~~~~~~--- 173 (216)
T 1ydh_A 108 AFIALPGGYGTMEELL---EMIT--WSQLG----IHKKTVGLLNVDGY-YNNLLALFDTGV-EEGFIKPGARNIVVS--- 173 (216)
T ss_dssp EEEECSCSHHHHHHHH---HHHH--HHHHT----SCCCEEEEECGGGT-THHHHHHHHHHH-HTTSSCHHHHTTEEE---
T ss_pred EEEEeCCCccHHHHHH---HHHH--HHHhc----ccCCCEEEecCCcc-chHHHHHHHHHH-HCCCCChHHcCeEEE---
Confidence 4666899987777777 5432 23332 26799886 33332 333333333211 1232 1233
Q ss_pred CCCHHHHHHHHHH
Q 024560 248 EATMTGICKQAID 260 (266)
Q Consensus 248 ~~~~~eAv~~av~ 260 (266)
.+|++|+++...+
T Consensus 174 ~d~~ee~~~~l~~ 186 (216)
T 1ydh_A 174 APTAKELMEKMEE 186 (216)
T ss_dssp ESSHHHHHHHHHH
T ss_pred eCCHHHHHHHHHH
Confidence 5699999987754
No 235
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=21.38 E-value=4e+02 Score=23.00 Aligned_cols=106 Identities=16% Similarity=-0.008 Sum_probs=55.9
Q ss_pred cEEEEecCchHHHHHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHH-------HhhhccCCCCCeEEEEecccccc
Q 024560 114 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVV-------IDCATADPDGRKRALLIGGGIAN 186 (266)
Q Consensus 114 ~Igii~NGaGlam~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~l-------l~~~~~d~~v~~vlvni~ggi~~ 186 (266)
+||+|+.|. .+-..+..+.... +-+.. .--+.++++..+..+-. ++.+..++++++|+|-.|..
T Consensus 6 rvgiiG~G~-~g~~~~~~l~~~~-~~~l~----av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~--- 76 (344)
T 3euw_A 6 RIALFGAGR-IGHVHAANIAANP-DLELV----VIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS--- 76 (344)
T ss_dssp EEEEECCSH-HHHHHHHHHHHCT-TEEEE----EEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG---
T ss_pred EEEEECCcH-HHHHHHHHHHhCC-CcEEE----EEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch---
Confidence 689998865 3444456665541 11111 11244555543332210 11122378999888765432
Q ss_pred hhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcCCce
Q 024560 187 FTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELGIPL 242 (266)
Q Consensus 187 ~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~Gip~ 242 (266)
.-+ +-+..+++ ..++|++ .--..+.++++++... +++.|+.+
T Consensus 77 --~h~---~~~~~al~--------~gk~v~~EKP~~~~~~~~~~l~~~-a~~~g~~~ 119 (344)
T 3euw_A 77 --THV---DLITRAVE--------RGIPALCEKPIDLDIEMVRACKEK-IGDGASKV 119 (344)
T ss_dssp --GHH---HHHHHHHH--------TTCCEEECSCSCSCHHHHHHHHHH-HGGGGGGE
T ss_pred --hhH---HHHHHHHH--------cCCcEEEECCCCCCHHHHHHHHHH-HHhcCCeE
Confidence 222 43444443 2466777 5556788888887763 44567654
No 236
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=21.36 E-value=2.2e+02 Score=20.04 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHHHhh
Q 024560 155 EVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRAL 234 (266)
Q Consensus 155 ~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L~~~ 234 (266)
.+.+.+.-++. +++.+.++++ ++++...|..+ ...+++..++... ....+ ++.|.+ ..-+++|+
T Consensus 29 ~l~~~l~~~~~----~~~~~~vvlD-ls~v~~iDssg--l~~L~~~~~~~~~----~g~~l--~l~~~~-~~v~~~l~-- 92 (116)
T 1th8_B 29 ELREQVTDVLE----NRAIRHIVLN-LGQLTFMDSSG--LGVILGRYKQIKN----VGGQM--VVCAVS-PAVKRLFD-- 92 (116)
T ss_dssp HHHHHHHHHHH----SSCCCEEEEE-EEEEEEECHHH--HHHHHHHHHHHHH----TTCCE--EEESCC-HHHHHHHH--
T ss_pred HHHHHHHHHHh----cCCCcEEEEE-CCCCcEEccHH--HHHHHHHHHHHHH----hCCeE--EEEeCC-HHHHHHHH--
Confidence 34444443443 3335666666 45555555544 2455555554432 23333 344544 46677887
Q ss_pred hhhcCCceeecCCCCCHHHHHHHH
Q 024560 235 GEELGIPLEVYGPEATMTGICKQA 258 (266)
Q Consensus 235 ~~~~Gip~~~~~~~~~~~eAv~~a 258 (266)
.+|+.-. |..+.+.++|++.+
T Consensus 93 --~~gl~~~-~~i~~~~~~Al~~~ 113 (116)
T 1th8_B 93 --MSGLFKI-IRVEADEQFALQAL 113 (116)
T ss_dssp --HHTGGGT-SEEESSHHHHHHHT
T ss_pred --HhCCcee-EEEeCCHHHHHHhc
Confidence 4464311 11255999988653
No 237
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=21.23 E-value=2.1e+02 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=25.2
Q ss_pred eEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCCCHHHHHHHH
Q 024560 175 KRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 231 (266)
Q Consensus 175 ~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~~~~~~~~~L 231 (266)
.+.||.|||-... + .+|.+.++.+ +.||++...|--+-.|-=++
T Consensus 64 ~l~INSpGG~v~~---~---~~I~~~i~~~-------~~~v~t~~~G~AaS~g~~i~ 107 (201)
T 3p2l_A 64 YFYINSPGGMVTA---G---MGVYDTMQFI-------KPDVSTICIGLAASMGSLLL 107 (201)
T ss_dssp EEEEEECCBCHHH---H---HHHHHHHHHS-------SSCEEEEEEEEEETHHHHHH
T ss_pred EEEEECCCCCHHH---H---HHHHHHHHHh-------CCCeEEEEcCEehhHHHHHH
Confidence 3445679886422 2 6777777765 46777666564444443333
No 238
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=20.87 E-value=72 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHHHHHHH-----------HhC--CceeeEeecce
Q 024560 13 LPLEFRGKIGDFIMGVFAVF-----------QDL--DFSFIEMNPFT 46 (266)
Q Consensus 13 l~~~~~~~~~~ii~~Ly~~f-----------~~~--D~~l~EINPLv 46 (266)
++++..+++.++..++|+.+ .+. +..++||||..
T Consensus 275 l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rp 321 (377)
T 1ehi_A 275 LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLP 321 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCC
Confidence 66778889999999999983 322 36677888763
No 239
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.74 E-value=1.5e+02 Score=22.48 Aligned_cols=52 Identities=6% Similarity=-0.005 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEEEeCCC
Q 024560 151 PNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGP 222 (266)
Q Consensus 151 a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvrl~G~ 222 (266)
.+++...++++-+++ + ++..|+|+ +.+| +-+-+.++++. ....|+++-+.+.
T Consensus 28 ~~~ee~~~~~~~l~~----~-digIIlIt--------e~ia---~~i~~~i~~~~----~~~~P~IveIPs~ 79 (115)
T 3aon_B 28 TTKTEIRKTIDEMAK----N-EYGVIYIT--------EQCA---NLVPETIERYK----GQLTPAIILIPSH 79 (115)
T ss_dssp CSHHHHHHHHHHHHH----T-TEEEEEEE--------HHHH---TTCHHHHHHHH----TSSSCEEEEECBT
T ss_pred CCHHHHHHHHHHHHh----c-CceEEEEe--------HHHH---HHhHHHHHHHh----CCCCCEEEEECCC
Confidence 577889999888887 7 87777765 3344 33334444432 2458988755544
No 240
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=20.65 E-value=2.6e+02 Score=21.05 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.0
Q ss_pred HHHHHhhhhhcCCce
Q 024560 228 LAKMRALGEELGIPL 242 (266)
Q Consensus 228 ~~~L~~~~~~~Gip~ 242 (266)
.+.+++.+++.|+++
T Consensus 126 ~~~~~~~a~~~~~~~ 140 (185)
T 3hp4_A 126 TSSFTQISEDTNAHL 140 (185)
T ss_dssp HHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHcCCEE
Confidence 445555555556553
No 241
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.62 E-value=2.2e+02 Score=23.36 Aligned_cols=74 Identities=8% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CCcEEEEecCchHHH------HHHHHHHhcCCCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 024560 112 KGRIWTMVAGGGASV------IYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIA 185 (266)
Q Consensus 112 ~G~Igii~NGaGlam------~t~D~l~~~g~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~ 185 (266)
..+|++++...+... ...+.+..+ |-++ ...-..++.+ +++++-+|+ +.|++++|+.
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~--g~~~-~~~~~~~~~~----~~~~~~~l~---~~~~~~ai~~------- 184 (277)
T 3hs3_A 122 IEKVLIQHWPLSLPTIRERIEAMTAEASKL--KIDY-LLEETPENNP----YISAQSALN---KSNQFDAIIT------- 184 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEE-EEEECCSSCH----HHHHHHHHH---TGGGCSEEEC-------
T ss_pred CCEEEEEeCCCcCccHHHHHHHHHHHHHHC--CCCC-CCCCccCCch----HHHHHHHHc---CCCCCCEEEE-------
Confidence 467999975543221 234566666 3322 1111223322 455555554 2577888773
Q ss_pred chhHhhhhHHHHHHHHHHhh
Q 024560 186 NFTDVATTFNGIIRALREKE 205 (266)
Q Consensus 186 ~~~~vA~~~~gii~al~~~~ 205 (266)
.++.+| -|+++++++.+
T Consensus 185 ~~d~~A---~g~~~al~~~g 201 (277)
T 3hs3_A 185 VNDLYA---AEIIKEAKRRN 201 (277)
T ss_dssp SSHHHH---HHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHHHcC
Confidence 367888 99999999875
No 242
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.46 E-value=1.9e+02 Score=25.64 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=40.0
Q ss_pred EecCCCcEEEEecCchHH-------HHHHHHHHhcCCCCCC---Ccee---eccCCCCHHHHHHHHHHHHhhhccCCCCC
Q 024560 108 VLNPKGRIWTMVAGGGAS-------VIYADTVGDLGYASEL---GNYA---EYSGAPNEEEVLQYARVVIDCATADPDGR 174 (266)
Q Consensus 108 ~v~l~G~Igii~NGaGla-------m~t~D~l~~~g~gg~p---AN~l---DlgG~a~~~~~~~al~~ll~~~~~d~~v~ 174 (266)
.++.+.+||+++=.+|+. -.+...|... |-++ .|.. .+-.+.+.+|..+- .-.+. ||+||
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~--G~~v~~~~~~~~~~~~~agtd~~Ra~dL-~~a~~----Dp~i~ 80 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDM--GFKVTFGEHVAEMDCMMSSSIRSRVADI-HEAFN----DSSVK 80 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHT--TCEEEECTTTTCCCTTSSCCHHHHHHHH-HHHHH----CTTEE
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhC--CCEEEECcchhhccCcccCCHHHHHHHH-HHHhh----CCCCC
Confidence 355688999997666542 2356677777 4553 1111 12233445555553 44455 89999
Q ss_pred eEEEEecc
Q 024560 175 KRALLIGG 182 (266)
Q Consensus 175 ~vlvni~g 182 (266)
+|+-.+.|
T Consensus 81 aI~~~rGG 88 (327)
T 4h1h_A 81 AILTVIGG 88 (327)
T ss_dssp EEEESCCC
T ss_pred EEEEcCCc
Confidence 99876544
No 243
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=20.37 E-value=3e+02 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 024560 145 AEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG 181 (266)
Q Consensus 145 lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ 181 (266)
--+.|+++.+...+.++.+.+ - ++.+-+++|
T Consensus 10 ~i~~~~~~~~~~~~~a~~~~~-----~-ad~iel~~p 40 (248)
T 1geq_A 10 YLTAGDPDKQSTLNFLLALDE-----Y-AGAIELGIP 40 (248)
T ss_dssp EEETTSSCHHHHHHHHHHHGG-----G-BSCEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHH-----c-CCEEEECCC
Confidence 345677776777777666654 3 777887754
No 244
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=20.28 E-value=3.9e+02 Score=22.50 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHhcC-CCCCCCceeeccCCCCHHHHHHHHHHHHhhhccCCCCCeEE
Q 024560 127 IYADTVGDLG-YASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRA 177 (266)
Q Consensus 127 ~t~D~l~~~g-~gg~pAN~lDlgG~a~~~~~~~al~~ll~~~~~d~~v~~vl 177 (266)
++++.++..| ..|++-.++-.-...++++..++++-+++ +.+|++|+
T Consensus 30 ~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~----~~~v~~ii 77 (358)
T 3hut_A 30 LQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVD----DPRVVGVL 77 (358)
T ss_dssp HHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH----CTTEEEEE
T ss_pred HHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhc----cCCcEEEE
Confidence 4556676663 01333333322333466677777777775 56776654
No 245
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=20.27 E-value=3e+02 Score=26.72 Aligned_cols=63 Identities=16% Similarity=-0.027 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEE
Q 024560 150 APNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIF 216 (266)
Q Consensus 150 ~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvv 216 (266)
-.+++.+.++.+.+-.+ .+-.-.=..|+|++|-..-.+.-. +|++++..+.-......++|++
T Consensus 367 ~l~~~~a~Kaarfi~~c-~~~~iPlv~lvDtpGf~~G~~~E~---~Gi~~~gAk~~~a~~~a~vP~i 429 (555)
T 3u9r_B 367 ILFAEAAQKGAHFIELA-CQRGIPLLFLQNITGFMVGQKYEA---GGIAKHGAKLVTAVACARVPKF 429 (555)
T ss_dssp SBCHHHHHHHHHHHHHH-HHHTCCEEEEEEECCBCCSHHHHH---TTHHHHHHHHHHHHHHCCSCEE
T ss_pred ccCHHHHHHHHHHHHHH-hcCCCCEEEEecCcCCCCCHHHHH---HHHHHHHHHHHHHHHhCCCCEE
Confidence 34566666666655322 111122356677888655444333 4555543332211112456655
No 246
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=20.25 E-value=3.5e+02 Score=24.45 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=38.1
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccCCCCCeEEEEec-----cccc---chhHhhhhHHHHHHHHHHhhhhhhcccceEEEE
Q 024560 147 YSGAPNEEEVLQYARVVIDCATADPDGRKRALLIG-----GGIA---NFTDVATTFNGIIRALREKESKLKAARMHIFVR 218 (266)
Q Consensus 147 lgG~a~~~~~~~al~~ll~~~~~d~~v~~vlvni~-----ggi~---~~~~vA~~~~gii~al~~~~~~~~~~~~pvvvr 218 (266)
+.| .+++.|.++++.+-.+. +...+++=||+. |+.. +. +.. .-+++++++. .++||+|.
T Consensus 133 I~G-~~~~d~~~~a~~l~~~~--~~g~d~ielNisCPn~~gg~~l~~~~-e~~---~~il~av~~~------~~~PV~vK 199 (354)
T 4ef8_A 133 MSG-LSMRENVEMCKRLAAVA--TEKGVILELNLSCPNVPGKPQVAYDF-DAM---RQCLTAVSEV------YPHSFGVK 199 (354)
T ss_dssp ECC-SSHHHHHHHHHHHHHHH--HHHCCEEEEECSSCCSTTSCCGGGSH-HHH---HHHHHHHHHH------CCSCEEEE
T ss_pred ecc-CCHHHHHHHHHHHhhhh--hcCCCEEEEeCCCCCCCCchhhccCH-HHH---HHHHHHHHHh------hCCCeEEE
Confidence 434 46788999988886210 245788999963 2211 12 222 5567777665 46899986
Q ss_pred eCC
Q 024560 219 RGG 221 (266)
Q Consensus 219 l~G 221 (266)
+.-
T Consensus 200 i~p 202 (354)
T 4ef8_A 200 MPP 202 (354)
T ss_dssp ECC
T ss_pred ecC
Confidence 654
No 247
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=20.23 E-value=2.7e+02 Score=23.79 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=37.9
Q ss_pred HHHHhhhccCCCCCeEEEEecccccchhHhhhhHHHHHHHHHHhhhhhhcccceEEE-EeCCCCHHHHHHHHHhhhhhcC
Q 024560 161 RVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV-RRGGPNYQTGLAKMRALGEELG 239 (266)
Q Consensus 161 ~~ll~~~~~d~~v~~vlvni~ggi~~~~~vA~~~~gii~al~~~~~~~~~~~~pvvv-rl~G~~~~~~~~~L~~~~~~~G 239 (266)
+-+++ ++++++|+|-.|... -+ +-+.++++ ..++|++ .=-..+.++++++.+. +++.|
T Consensus 58 ~ell~----~~~vD~V~i~tp~~~-----H~---~~~~~al~--------aGkhVl~EKPla~~~~ea~~l~~~-a~~~g 116 (294)
T 1lc0_A 58 EDALR----SQEIDVAYICSESSS-----HE---DYIRQFLQ--------AGKHVLVEYPMTLSFAAAQELWEL-AAQKG 116 (294)
T ss_dssp HHHHH----CSSEEEEEECSCGGG-----HH---HHHHHHHH--------TTCEEEEESCSCSCHHHHHHHHHH-HHHTT
T ss_pred HHHhc----CCCCCEEEEeCCcHh-----HH---HHHHHHHH--------CCCcEEEeCCCCCCHHHHHHHHHH-HHHhC
Confidence 33466 889998887755431 12 44444443 2477887 5455688888888774 34567
Q ss_pred Cce
Q 024560 240 IPL 242 (266)
Q Consensus 240 ip~ 242 (266)
+.+
T Consensus 117 ~~~ 119 (294)
T 1lc0_A 117 RVL 119 (294)
T ss_dssp CCE
T ss_pred CEE
Confidence 764
Done!