RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024560
(266 letters)
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 61.4 bits (149), Expect = 2e-12
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 113 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPD 172
G I MV G G ++ D V G E N+ + G +E V + +++ +D
Sbjct: 19 GNIGCMVNGAGLAMGTMDIVKLHG--GEPANFLDVGGGATKERVTEAFKII----LSDDK 72
Query: 173 GRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMR 232
+ ++ +GII A+ E + + VR G N + G K+
Sbjct: 73 VKA---VLVNIFGGIVRCDLIADGIIGAVAEVGVNVP-----VVVRLEGNNAELGAKKLA 124
Query: 233 ALGEELGIPLEVYGPEATMTGICKQAI 259
+ G+ + +T +Q +
Sbjct: 125 ----DSGLNII---AAKGLTDAAQQVV 144
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 41.8 bits (97), Expect = 3e-05
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 DFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 68
MG+ +F + D + IE+NP + G+ LD + D A F+
Sbjct: 179 KIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 40.6 bits (95), Expect = 3e-05
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 98 EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVL 157
E +A + G I V G G ++ D + G + N+ + G E +V
Sbjct: 4 ENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNG--GKPANFLDLGGGVKESQVY 61
Query: 158 QYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFV 217
Q TADP ++ + A NGI +A RE E K+ + V
Sbjct: 62 Q----AFKLLTADPKVEA---ILVNIFGGIVNCAIIANGITKACRELELKVP-----LVV 109
Query: 218 RRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAIDCI 262
R G N + + G+P+ + K+A+ +
Sbjct: 110 RLEGTNVHEA----QNILTNSGLPITSA---VDLEDAAKKAVASV 147
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 40.0 bits (92), Expect = 1e-04
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 14 PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 68
+ + D I ++ +F +D + +E+NPF G+ D + DD A F+
Sbjct: 178 LGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 233
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 29.7 bits (66), Expect = 0.23
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 34/152 (22%)
Query: 111 PKG-RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE------EVLQYARVV 163
P+G ++ M GG V+ AD + G A EE + V
Sbjct: 1 PRGNKVAIMTNAGGPGVLTADELDKRG-----LKLATLEEKTIEELRSFLPPMAAVKNPV 55
Query: 164 IDCATADPDGRKRAL--------------LIGGGIANFTDVATTFNGIIRALREKESKLK 209
A+A + R + + GIIRA++E ++
Sbjct: 56 DMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNE-- 113
Query: 210 AARMHIFVRRGGPNYQTGLAKMRALGEELGIP 241
+ + + G + K + L E+ GIP
Sbjct: 114 --KPVLAMFMAGYVSE----KAKELLEKNGIP 139
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 27.8 bits (61), Expect = 1.1
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 1 MTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPF------TLVNGEPYP 54
M A +P G ++L+ EM+ + +NG PY
Sbjct: 151 MGDKLVAKAKELVPPGMIG----PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYS 206
Query: 55 LDMRGE 60
GE
Sbjct: 207 FLYNGE 212
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 27.2 bits (59), Expect = 1.2
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 172 DGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKM 231
D ++ L++ GG F +++ L +K S+ + + L +
Sbjct: 3 DVKRPVLMLAGGTG-----IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57
Query: 232 RA 233
+
Sbjct: 58 QQ 59
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 29 FAVFQDLDFSFIEMNPF------TLVNGEPYPLDMRGE 60
DL+F E++ VNG PY
Sbjct: 172 GVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDR 209
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 26.1 bits (57), Expect = 5.8
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 67 FKNFKKWANIEFPLPFGRVLSSTESFIHSLDE 98
W + F L RVL+ T + +
Sbjct: 329 QPGDPDWEELLFKLWTTRVLNYTMTVALRGYD 360
>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
[TaxId: 10891]}
Length = 666
Score = 25.3 bits (55), Expect = 9.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 91 SFIHSLDEKTSA----SLKFTVLNPKGRIWTMVAG 121
F S + ++A SL +LNP G W +
Sbjct: 10 VFKPSAETSSTAVPSLSLSPGMLNPGGVPWIAIGD 44
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 133
Score = 24.6 bits (53), Expect = 9.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 59 GELDDTAAFKNFKKWANIEFP 79
G D +A ++K A +E
Sbjct: 112 GNDDHSALACYYEKLAKVEVT 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,183
Number of extensions: 47924
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 16
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)