BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024562
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IIR|A Chain A, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|B Chain B, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|C Chain C, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|D Chain D, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|E Chain E, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|F Chain F, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|G Chain G, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|H Chain H, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|I Chain I, Acetate Kinase From A Hypothermophile Thermotoga Maritima
 pdb|2IIR|J Chain J, Acetate Kinase From A Hypothermophile Thermotoga Maritima
          Length = 403

 Score = 32.0 bits (71), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 63  QNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMK--IDQKSYLLVNSESWA 120
           + +G EG++++ ++GD+   +ER  P+      HE A +L +   +D+K  ++ + +   
Sbjct: 32  ERIGIEGSRLVHRVGDEKHVIERELPD------HEEALKLILNTLVDEKLGVIKDLKEID 85

Query: 121 AVAQRKELQDSENFNE---VKDDENKVINSLSEVCDAQNPN--MGMNPPMQ 166
           AV  R  +   E F E   V ++  K I  +S +    NP   MG+   M+
Sbjct: 86  AVGHRV-VHGGERFKESVLVDEEVLKAIEEVSPLAPLHNPANLMGIKAAMK 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,539,766
Number of Sequences: 62578
Number of extensions: 261609
Number of successful extensions: 836
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 10
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)