Query 024562
Match_columns 266
No_of_seqs 128 out of 144
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 9.4E-63 2E-67 472.9 15.9 169 1-234 237-406 (406)
2 KOG4711 Predicted membrane pro 100.0 3.3E-48 7.1E-53 387.8 11.2 243 1-243 329-597 (625)
3 PF10334 DUF2421: Protein of u 91.8 6.2 0.00013 35.4 13.5 77 2-87 69-152 (229)
4 PF12841 YvrJ: YvrJ protein fa 64.1 19 0.00041 24.7 4.5 32 205-236 6-37 (38)
5 PF08893 DUF1839: Domain of un 54.4 37 0.00079 33.2 6.3 76 28-107 238-317 (319)
6 PF12805 FUSC-like: FUSC-like 44.5 1.3E+02 0.0029 27.6 8.2 74 29-106 174-252 (284)
7 PTZ00391 transport protein par 40.9 24 0.00052 31.2 2.6 27 207-233 1-27 (168)
8 PF01865 PhoU_div: Protein of 40.1 2.5E+02 0.0054 24.3 13.0 75 24-108 88-163 (214)
9 KOG4514 Uncharacterized conser 37.7 1.2E+02 0.0026 28.0 6.6 107 10-117 76-192 (222)
10 TIGR02849 spore_III_AD stage I 36.9 72 0.0016 26.2 4.6 35 206-240 4-38 (101)
11 PF10158 LOH1CR12: Tumour supp 36.6 2.6E+02 0.0056 23.7 8.1 70 25-109 35-106 (131)
12 COG2178 Predicted RNA-binding 33.4 97 0.0021 28.5 5.3 56 55-113 15-73 (204)
13 PRK14562 haloacid dehalogenase 30.9 1E+02 0.0022 27.7 5.0 62 47-112 12-73 (204)
14 PF05482 Serendipity_A: Serend 26.6 1.7E+02 0.0036 30.8 6.2 71 20-90 308-397 (552)
15 KOG3315 Transport protein part 26.6 79 0.0017 28.7 3.5 30 206-235 26-55 (191)
16 KOG4092 Mitochondrial F1F0-ATP 26.4 18 0.00039 30.0 -0.5 16 4-23 8-24 (108)
17 PF03872 RseA_N: Anti sigma-E 25.7 43 0.00093 26.2 1.5 13 20-32 33-45 (87)
18 PF06686 SpoIIIAC: Stage III s 24.7 1.1E+02 0.0024 21.9 3.4 33 202-234 26-58 (58)
19 PLN02806 complex I subunit 24.4 38 0.00083 27.0 1.0 13 15-27 28-40 (81)
20 PF08285 DPM3: Dolichol-phosph 24.3 1.1E+02 0.0023 24.5 3.6 37 61-106 41-77 (91)
21 TIGR02264 gmx_para_CXXCG Myxoc 24.2 62 0.0013 30.3 2.5 49 9-57 100-153 (237)
22 TIGR00153 conserved hypothetic 23.9 5E+02 0.011 22.8 10.5 22 215-236 187-208 (216)
23 PLN03085 nucleobase:cation sym 23.6 2.8E+02 0.006 26.0 6.5 70 28-110 126-199 (221)
24 PF10280 Med11: Mediator compl 23.1 4.2E+02 0.0091 21.6 7.3 61 25-86 14-74 (117)
25 PF08919 F_actin_bind: F-actin 22.0 78 0.0017 26.3 2.4 52 50-105 56-107 (110)
26 PF10456 BAR_3_WASP_bdg: WASP- 21.3 2.2E+02 0.0047 26.5 5.4 62 21-96 77-138 (237)
27 TIGR02663 nifX nitrogen fixati 20.7 43 0.00092 27.0 0.6 45 61-111 68-112 (119)
28 PF09274 ParG: ParG; InterPro 20.2 1.2E+02 0.0025 23.9 2.9 29 50-78 41-69 (76)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=9.4e-63 Score=472.88 Aligned_cols=169 Identities=53% Similarity=0.836 Sum_probs=152.2
Q ss_pred CCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 1 MEFAIWEPPHGPYRSFNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKV 80 (266)
Q Consensus 1 ~nfA~WEP~HGrF~~frhPW~qY~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~si 80 (266)
+|||+|||+||||+ |||||+||+|||++||||||+|||||||++||||||+++|++|+++|++|+.|++|||||||++|
T Consensus 237 ~~~A~WEP~HG~f~-f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~i 315 (406)
T PF11744_consen 237 ANFARWEPPHGRFR-FRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSI 315 (406)
T ss_pred hhhhhhcccccCCc-cCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCC-cchHHHHHHHHHHHHHHHhhhhhhcccchhhHHHhhhhhhhccccccccccchhhhhcccchhcccCCCCC
Q 024562 81 EKMERLSP-EGILFEVHEAAEELQMKIDQKSYLLVNSESWAAVAQRKELQDSENFNEVKDDENKVINSLSEVCDAQNPNM 159 (266)
Q Consensus 81 k~M~~~s~-~~~l~evh~AaeeLQ~~I~~~s~Llv~se~w~~~~~~~~~~~~~~~~~~~~~~~~~~~s~S~~~~~~~~~~ 159 (266)
|+|+++++ .+++.++|+|+|+||++||++||||+|+++-.
T Consensus 316 k~m~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~--------------------------------------- 356 (406)
T PF11744_consen 316 KTMTKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPE--------------------------------------- 356 (406)
T ss_pred HhcccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhh---------------------------------------
Confidence 99999999 56689999999999999999999999987500
Q ss_pred CCCCCcchhhhccccCCCCCCCCccccccccccccccchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 160 GMNPPMQEWISSENMSRNPVSWPRMSFHNIESTLGLQESKVYESASSLSLATFASLLIEFVARLQNLVEAFEELC 234 (266)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~swpa~~s~~~~~~~~~~e~~s~EsasaLslATFASLLIE~VARLe~vVdaVeELs 234 (266)
++.++++. ..+++.+++|++++||+|||||||||||+|+|+|||+|||||
T Consensus 357 ------------~~~~~~~~-------------~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eLa 406 (406)
T PF11744_consen 357 ------------RSFLRPQS-------------SKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEELA 406 (406)
T ss_pred ------------hhhccccc-------------cccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00111111 123445899999999999999999999999999999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=3.3e-48 Score=387.83 Aligned_cols=243 Identities=45% Similarity=0.618 Sum_probs=180.5
Q ss_pred CCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 1 MEFAIWEPPHGPYRSFNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKV 80 (266)
Q Consensus 1 ~nfA~WEP~HGrF~~frhPW~qY~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~si 80 (266)
+|||+|||+||+|+.|+|||++|+|||+++|||||+|+||||||.|+||||.++|++|+++|.|||.|++|||++++.++
T Consensus 329 ~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~~~l~rva~e~~kvl~~~~~~~ 408 (625)
T KOG4711|consen 329 ANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFRLTLRRVAIEISKVLRPFRAKV 408 (625)
T ss_pred HHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 58999999999666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCC--cchHHHHHHHHHHHHHHHhhhhhhcccchhhHHHhhhhhhhcc--cccc-ccccc----h--hhhhcccc
Q 024562 81 EKMERLSP--EGILFEVHEAAEELQMKIDQKSYLLVNSESWAAVAQRKELQDS--ENFN-EVKDD----E--NKVINSLS 149 (266)
Q Consensus 81 k~M~~~s~--~~~l~evh~AaeeLQ~~I~~~s~Llv~se~w~~~~~~~~~~~~--~~~~-~~~~~----~--~~~~~s~S 149 (266)
++|+++++ .++...++.|+++||.+||++|+++|++++|...+.....+.. .++. ++++. + ...++.++
T Consensus 409 ~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ek~~~~~~~~~~ 488 (625)
T KOG4711|consen 409 ELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEPNLKGTFPVEKYNELIHKLLS 488 (625)
T ss_pred HhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccchhhcccccchhHHHHHHHhhc
Confidence 99999999 4456899999999999999999999999999776553322211 1111 00010 0 11111112
Q ss_pred hhccc-CCCCCCCCCCcchhh------hccccCCCCCCCCcccccccccc---ccc----cchhhhhccccchHHHHHH-
Q 024562 150 EVCDA-QNPNMGMNPPMQEWI------SSENMSRNPVSWPRMSFHNIEST---LGL----QESKVYESASSLSLATFAS- 214 (266)
Q Consensus 150 ~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~swpa~~s~~~~~~---~~~----~e~~s~EsasaLslATFAS- 214 (266)
..-.. ..+..+......... ...-+...+.+||+..++.+..+ ... ...+.++++++|++|||||
T Consensus 489 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~~~~~~~~~~se~l~~a~fas~ 568 (625)
T KOG4711|consen 489 LGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILSRATSKSYESSEALNLATFASN 568 (625)
T ss_pred chhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCccccccccccccccccCchhcCcccccch
Confidence 10000 000000000000000 01123466788887776665221 111 2358999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 024562 215 LLIEFVARLQNLVEAFEELCEKANFKEPV 243 (266)
Q Consensus 215 LLIE~VARLe~vVdaVeELs~lA~FKe~~ 243 (266)
||+|||||++++|++++||+.+|+|++++
T Consensus 569 ll~~~~arl~~vv~~~~el~~~a~f~~~~ 597 (625)
T KOG4711|consen 569 LLLEFVARLDNVVSAVEELSDKANFKEYD 597 (625)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcccc
Confidence 99999999999999999999999999775
No 3
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=91.83 E-value=6.2 Score=35.39 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=49.1
Q ss_pred CcccccCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhccc--cccCCCChHHHHHHHHHHH----HHHHHHHHHHH
Q 024562 2 EFAIWEPP-HGPYRSFNYPWKNYVKVSGALRHCAFMVMAMHGCI--LSEIQAPPEKRQVFASELQ----NVGNEGAKVLR 74 (266)
Q Consensus 2 nfA~WEP~-HGrF~~frhPW~qY~KvG~~lR~CAy~v~AL~gcl--~seiQaP~e~r~~~~~~c~----~v~~e~akvLr 74 (266)
.+++|||+ =||| |=+.|.+|=. .|...+.+|+... .+... |.+.+..|-.... .+..++--||-
T Consensus 69 ~~~k~Ep~l~G~F-----P~~~Y~~l~~---~~~~il~~l~~l~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~ 139 (229)
T PF10334_consen 69 AFAKFEPSLKGRF-----PKETYQRLLE---LCQNILDLLSLLSYVSTRLE-PSEWRERLLRRTGWLRPELIGDIFSVLY 139 (229)
T ss_pred HHhCcCCCCCCCC-----CHHHHHHHHH---HHHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 47899999 5544 6678877654 5555555555443 33444 7666666554332 34455667888
Q ss_pred HHHHHHHhhccCC
Q 024562 75 KLGDKVEKMERLS 87 (266)
Q Consensus 75 eL~~sik~M~~~s 87 (266)
-|+.++++=....
T Consensus 140 ~ls~al~~g~pLP 152 (229)
T PF10334_consen 140 MLSSALRTGQPLP 152 (229)
T ss_pred HHHHHHhcCCCCC
Confidence 8899998766654
No 4
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=64.07 E-value=19 Score=24.71 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=28.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024562 205 SSLSLATFASLLIEFVARLQNLVEAFEELCEK 236 (266)
Q Consensus 205 saLslATFASLLIE~VARLe~vVdaVeELs~l 236 (266)
-..|.|.-.-||+-+=.|||++.+++++|.+.
T Consensus 6 ~GFPi~va~yLL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999863
No 5
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=54.37 E-value=37 Score=33.16 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhccccc----cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 024562 28 GALRHCAFMVMAMHGCILS----EIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQ 103 (266)
Q Consensus 28 ~~lR~CAy~v~AL~gcl~s----eiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ 103 (266)
+.||||+-+.|-+..|+.= .-..|. ...+.|.+|++++=-+-=.|+.+|..-+.....+.++.|..|-+.+=
T Consensus 238 ntlRQlGAnfEL~a~~l~WL~~~g~~~~~----~aa~a~~~ias~Ak~~QFrLARAv~r~r~~~~~~~Ld~~~~ay~~~~ 313 (319)
T PF08893_consen 238 NTLRQLGANFELLASYLRWLDAQGFSGPA----EAAEACRTIASEAKVVQFRLARAVARGRFDDCEDCLDPMEAAYDRAM 313 (319)
T ss_pred hhHHhccccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Confidence 7899999999988888852 122343 38889999999887777789999877776677777888877777665
Q ss_pred HHHh
Q 024562 104 MKID 107 (266)
Q Consensus 104 ~~I~ 107 (266)
..|+
T Consensus 314 ~~L~ 317 (319)
T PF08893_consen 314 DGLA 317 (319)
T ss_pred HHHh
Confidence 5443
No 6
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=44.46 E-value=1.3e+02 Score=27.59 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhccccccCCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 024562 29 ALRHCAFMVMAMHGCILSEIQAPPEKRQVFAS-----ELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQ 103 (266)
Q Consensus 29 ~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~-----~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ 103 (266)
.++..--.++-....+-+.+. .+++++.|++ .|.++-.+.|..|+.+|.+|..-++.. ...+++.++++|+
T Consensus 174 ll~~~~~a~Dl~E~~~as~~~-y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~---~~~~l~~~l~~l~ 249 (284)
T PF12805_consen 174 LLLLFFEAVDLFERALASHYD-YEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYH---HRNRLKRALEALE 249 (284)
T ss_pred HHHHHHHHHHHHHHHHhcccc-HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CchHHHHHHHHHH
Confidence 334333334333333333322 4556666554 789999999999999999999666654 2234455555555
Q ss_pred HHH
Q 024562 104 MKI 106 (266)
Q Consensus 104 ~~I 106 (266)
..|
T Consensus 250 ~~l 252 (284)
T PF12805_consen 250 ESL 252 (284)
T ss_pred HHH
Confidence 554
No 7
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=40.90 E-value=24 Score=31.21 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 207 LSLATFASLLIEFVARLQNLVEAFEEL 233 (266)
Q Consensus 207 LslATFASLLIE~VARLe~vVdaVeEL 233 (266)
+|+++|+.|..|+|...++=++.++||
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~el 27 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRL 27 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 478999999999998887766656544
No 8
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=40.07 E-value=2.5e+02 Score=24.32 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHH
Q 024562 24 VKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGIL-FEVHEAAEEL 102 (266)
Q Consensus 24 ~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l-~evh~AaeeL 102 (266)
.+|-..+..+|..+...+ +..|++++..| ..++..+.+...++...|+.+.......+- .+.-...+.+
T Consensus 88 D~I~d~i~~~a~~l~~~~------~~~~~~~~~~~----~~l~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~I~~~ 157 (214)
T PF01865_consen 88 DDIADYIEDAAKRLSLYK------VEIPEELREEF----QELAEIVVEAIEELVEAIEELKSILESSFEEKELIKEINKL 157 (214)
T ss_dssp HHHHHHHHHHHHHHHHHT----------CCGHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCS-HCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc------cCCCcchhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 356666777777666544 34577666544 455566666667777777777764322221 2333344555
Q ss_pred HHHHhh
Q 024562 103 QMKIDQ 108 (266)
Q Consensus 103 Q~~I~~ 108 (266)
..+.|.
T Consensus 158 E~~~D~ 163 (214)
T PF01865_consen 158 EEEADK 163 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 9
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=1.2e+02 Score=27.97 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhcccc-ccCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024562 10 HGPYRSFNYPWKNYVKVSGALRHCAFMVMAMHGCIL-SEIQAP------PEKRQVFASELQNVGNEGAKVLRKLGDKVEK 82 (266)
Q Consensus 10 HGrF~~frhPW~qY~KvG~~lR~CAy~v~AL~gcl~-seiQaP------~e~r~~~~~~c~~v~~e~akvLreL~~sik~ 82 (266)
||.-.|| ---..-.||-...+--+|.-.+-.+|-- .-||+| +++-.-+....+.++..+-..||-||..+..
T Consensus 76 ~~~~thF-Va~dLe~kiRes~a~s~p~sa~a~plps~~p~~s~~ip~vDp~VL~DlE~~~~el~~~vD~llr~lgg~lh~ 154 (222)
T KOG4514|consen 76 SDGMTHF-VAHDLEAKIRESVAASAPSSAHATPLPSMGPIQSRNIPEVDPSVLSDLELEAQELASSVDNLLRNLGGLLHS 154 (222)
T ss_pred CCCceee-hhhhHHHHHHhccCCCCCCccccCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444443 2333344555555555566666666763 356654 4566667778899999999999999999999
Q ss_pred hccCCCcchH---HHHHHHHHHHHHHHhhhhhhcccch
Q 024562 83 MERLSPEGIL---FEVHEAAEELQMKIDQKSYLLVNSE 117 (266)
Q Consensus 83 M~~~s~~~~l---~evh~AaeeLQ~~I~~~s~Llv~se 117 (266)
|+-.+..++- +.|+++-+.+..-||.+-.||-.-|
T Consensus 155 is~lt~~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~E 192 (222)
T KOG4514|consen 155 ISSLTADNVQVYRNAVNKLTDTLDANIKCQYQLLAKAE 192 (222)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9998877772 5788899999999999988885544
No 10
>TIGR02849 spore_III_AD stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment has been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream.
Probab=36.87 E-value=72 Score=26.18 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024562 206 SLSLATFASLLIEFVARLQNLVEAFEELCEKANFK 240 (266)
Q Consensus 206 aLslATFASLLIE~VARLe~vVdaVeELs~lA~FK 240 (266)
-+++++=.-++.=++.|++.+++.+++|++.|+-.
T Consensus 4 ~lsl~agi~If~~~i~kl~~ii~~l~~l~~~a~i~ 38 (101)
T TIGR02849 4 FLSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLD 38 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35677777788889999999999999999999864
No 11
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=36.61 E-value=2.6e+02 Score=23.73 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch--HHHHHHHHHHH
Q 024562 25 KVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGI--LFEVHEAAEEL 102 (266)
Q Consensus 25 KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~--l~evh~AaeeL 102 (266)
++..-+++||=.|-+ -...|..-|..|-.+.++++..+...-|.+.+... .+ +.+|+..+...
T Consensus 35 R~Q~HL~~cA~~Va~--------------~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 35 RYQEHLNQCAEAVAF--------------DQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRC 99 (131)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455566667665533 46788889999999999999999999999888753 22 45666666666
Q ss_pred HHHHhhh
Q 024562 103 QMKIDQK 109 (266)
Q Consensus 103 Q~~I~~~ 109 (266)
|+-+++.
T Consensus 100 ~~lL~~~ 106 (131)
T PF10158_consen 100 QSLLNQT 106 (131)
T ss_pred HHHHHHH
Confidence 6655443
No 12
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=97 Score=28.54 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHHHHHhhhhhhc
Q 024562 55 RQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPE---GILFEVHEAAEELQMKIDQKSYLL 113 (266)
Q Consensus 55 r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~---~~l~evh~AaeeLQ~~I~~~s~Ll 113 (266)
+...+++..+++.|. .|.-+.+|..|.+.+-+ +-+++++++++.|+..|+..|-+.
T Consensus 15 ~d~~REE~l~lsRei---~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~ 73 (204)
T COG2178 15 KDKAREEALKLSREI---VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELY 73 (204)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344556777777654 45566677777777544 346889999999999999999775
No 13
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=30.91 E-value=1e+02 Score=27.71 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=41.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHhhhhhh
Q 024562 47 EIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMKIDQKSYL 112 (266)
Q Consensus 47 eiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~I~~~s~L 112 (266)
++..=.+.|..+...|..|...|.+++..+=.. ........+.++++-+.+|...+...|++
T Consensus 12 ~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~----~~~~a~~~l~~a~~~~~~l~~~~~~~~~~ 73 (204)
T PRK14562 12 ELEEKDEAREEALKLSREIVRLSGDAIRAIHRG----DFEEAEKLLKEAEELVKELKELLKDHPEL 73 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 444556778888888888888888876655431 11122445667777777788877777766
No 14
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=26.61 E-value=1.7e+02 Score=30.77 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccccCC---CChH------HHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 024562 20 WKNYVKVSGALRHCAFMVMAMHGCILSEIQ---APPE------KRQVFASELQNV----------GNEGAKVLRKLGDKV 80 (266)
Q Consensus 20 W~qY~KvG~~lR~CAy~v~AL~gcl~seiQ---aP~e------~r~~~~~~c~~v----------~~e~akvLreL~~si 80 (266)
+.+=+|....+|-|-...|||+.||.+-+| ++.. +-++|.++..+. .+=+..+|-.|...|
T Consensus 308 ~s~d~K~kt~IRSCLASlEsLDt~LIPalql~~s~~~~~hs~iLe~Hf~eE~~~fr~~I~eIIDS~Af~~~~ld~L~~~I 387 (552)
T PF05482_consen 308 FSPDLKRKTIIRSCLASLESLDTCLIPALQLPDSKSSDHHSEILEQHFNEEMNKFRNAIHEIIDSRAFCQCYLDMLQEGI 387 (552)
T ss_pred hCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999 2211 344555544332 445677899999999
Q ss_pred HhhccCCCcc
Q 024562 81 EKMERLSPEG 90 (266)
Q Consensus 81 k~M~~~s~~~ 90 (266)
..+++.-+..
T Consensus 388 ~~~ek~~~k~ 397 (552)
T PF05482_consen 388 DAAEKRFPKT 397 (552)
T ss_pred HHHHhccchh
Confidence 9998774443
No 15
>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.55 E-value=79 Score=28.74 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024562 206 SLSLATFASLLIEFVARLQNLVEAFEELCE 235 (266)
Q Consensus 206 aLslATFASLLIE~VARLe~vVdaVeELs~ 235 (266)
-.|+-|||-|.-|+|.++|+=|+.|.||-+
T Consensus 26 EvslS~fA~Lfsemiqy~q~qv~tv~d~e~ 55 (191)
T KOG3315|consen 26 EVSLSAFAFLFSEMIQYLQSQVFTVADLET 55 (191)
T ss_pred cccHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 578999999999999999999998877643
No 16
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=26.40 E-value=18 Score=29.95 Aligned_cols=16 Identities=44% Similarity=0.999 Sum_probs=12.3
Q ss_pred ccccC-CCCCCCCCCCCchhH
Q 024562 4 AIWEP-PHGPYRSFNYPWKNY 23 (266)
Q Consensus 4 A~WEP-~HGrF~~frhPW~qY 23 (266)
++|.| -||.|| ||.-|
T Consensus 8 kr~N~~vhgpyc----par~y 24 (108)
T KOG4092|consen 8 KRWNKMVHGPYC----PARVY 24 (108)
T ss_pred hhhCcCCCCCCC----Ccccc
Confidence 67887 599999 56666
No 17
>PF03872 RseA_N: Anti sigma-E protein RseA, N-terminal domain; InterPro: IPR005572 Sigma-E is important for the induction of proteins involved in heat shock response. RseA binds sigma-E via its N-terminal domain, sequestering sigma-E and preventing transcription from heat-shock promoters []. The C-terminal domain is located in the periplasm, and may interact with other protein that signal periplasmic stress.; GO: 0016989 sigma factor antagonist activity; PDB: 1OR7_F 1YFN_G.
Probab=25.65 E-value=43 Score=26.22 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHH
Q 024562 20 WKNYVKVSGALRH 32 (266)
Q Consensus 20 W~qY~KvG~~lR~ 32 (266)
|..|.-||.+||.
T Consensus 33 W~rYhlIgd~lR~ 45 (87)
T PF03872_consen 33 WQRYHLIGDVLRG 45 (87)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999996
No 18
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=24.71 E-value=1.1e+02 Score=21.85 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=29.9
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 202 ESASSLSLATFASLLIEFVARLQNLVEAFEELC 234 (266)
Q Consensus 202 EsasaLslATFASLLIE~VARLe~vVdaVeELs 234 (266)
|.+.-+++|+-..+|.=.+.+++.+.|.+++|.
T Consensus 26 e~a~~isla~~i~I~~~~~~~i~~l~~~i~~l~ 58 (58)
T PF06686_consen 26 EYASLISLAGGILIFLLVLPKISSLFETIQELA 58 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999874
No 19
>PLN02806 complex I subunit
Probab=24.42 E-value=38 Score=26.97 Aligned_cols=13 Identities=15% Similarity=0.618 Sum_probs=10.0
Q ss_pred CCCCCchhHHHHH
Q 024562 15 SFNYPWKNYVKVS 27 (266)
Q Consensus 15 ~frhPW~qY~KvG 27 (266)
.|||||++-+-.|
T Consensus 28 ~mrhPWeHV~~~G 40 (81)
T PLN02806 28 LMRHPWEHVLAMG 40 (81)
T ss_pred cccCcHHHHHHHh
Confidence 3789999977655
No 20
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.35 E-value=1.1e+02 Score=24.53 Aligned_cols=37 Identities=32% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHH
Q 024562 61 ELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMKI 106 (266)
Q Consensus 61 ~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~I 106 (266)
|.--+-.=++-.|-.+|-.|-|...|. +|++|||.+|
T Consensus 41 P~~~Lv~fG~Ysl~~lgy~v~tFnDcp---------eA~~eL~~eI 77 (91)
T PF08285_consen 41 PFYALVSFGCYSLFTLGYGVATFNDCP---------EAAKELQKEI 77 (91)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCH---------HHHHHHHHHH
Confidence 777788888999999999999988885 5555555555
No 21
>TIGR02264 gmx_para_CXXCG Myxococcus xanthus double-CXXCG motif paralogous family. This family consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment.
Probab=24.20 E-value=62 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHhhccccc---cCCCChHHHHH
Q 024562 9 PHGPYRS--FNYPWKNYVKVSGALRHCAFMVMAMHGCILS---EIQAPPEKRQV 57 (266)
Q Consensus 9 ~HGrF~~--frhPW~qY~KvG~~lR~CAy~v~AL~gcl~s---eiQaP~e~r~~ 57 (266)
++|+|+. +.-||.-|+..-++=|-=+--|--|+||-.- .-+.|+++..+
T Consensus 100 asG~FG~l~~q~~~~l~vrreAlerL~~~GvrGL~G~~~~lrfR~k~pPeLleL 153 (237)
T TIGR02264 100 ASGRFGDLALQAWSLLLIRIEALERLRAAGVRGLHGAPGDLRFRGKNPPELLEL 153 (237)
T ss_pred cccccccceecCcchhhhhHHHHHHHHHhccccccCCccceeccCCCCchhhhh
Confidence 5889984 4569999999999999999999999999642 23356665543
No 22
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=23.93 E-value=5e+02 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 024562 215 LLIEFVARLQNLVEAFEELCEK 236 (266)
Q Consensus 215 LLIE~VARLe~vVdaVeELs~l 236 (266)
.+.|++.+|++++|..|+.|+.
T Consensus 187 ~~kei~~~le~iaD~~Edvad~ 208 (216)
T TIGR00153 187 ILCKFIEKLGNISDYAEDAGDR 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998864
No 23
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=23.56 E-value=2.8e+02 Score=25.95 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C---CcchHHHHHHHHHHHH
Q 024562 28 GALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERL-S---PEGILFEVHEAAEELQ 103 (266)
Q Consensus 28 ~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~-s---~~~~l~evh~AaeeLQ 103 (266)
..+|. +|.|+.=+||+ |+++- ++.++..+-.+--..||+. -.++.. . -......+++.+.+|+
T Consensus 126 ~e~r~-~nRILknaG~l------PpwIe--L~KEI~~~i~~lR~~Lr~~----w~~~s~~~~~~W~~~~~~~qe~Ir~LN 192 (221)
T PLN03085 126 PAEDT-LYRILSKNGCA------PEWVE--LNKEIRGQINEWRSALKKA----WANRCEGDDSQWIEDSRLLQEQLRQIN 192 (221)
T ss_pred HHHHH-HHHHHHHCCCC------CHHHH--HHHHHHHHHHHHHHHHHHH----hcccCchhHHHHHHHHHHHHHHHHHHH
Confidence 44554 99999999999 66543 2233322222223333332 112111 1 1123455777888888
Q ss_pred HHHhhhh
Q 024562 104 MKIDQKS 110 (266)
Q Consensus 104 ~~I~~~s 110 (266)
.+|++.-
T Consensus 193 kkIdkYN 199 (221)
T PLN03085 193 NKVFRYN 199 (221)
T ss_pred HHHHHhc
Confidence 8887653
No 24
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=23.08 E-value=4.2e+02 Score=21.64 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024562 25 KVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERL 86 (266)
Q Consensus 25 KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~ 86 (266)
+|..+|++++-+|.+|.-=-... +.|+..+..|...|...-.-...|=.+|..-|+-|+.-
T Consensus 14 ~I~~lL~~A~~ai~~Ls~~~~~~-~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e~ 74 (117)
T PF10280_consen 14 KIVSLLQHAGQAIQELSNPKSPD-QDPESSKEAFESATSEFFSTLSSVEVELRRQIKYLEEV 74 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555554322211 33444555555555554444444444444444444433
No 25
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=22.02 E-value=78 Score=26.31 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHH
Q 024562 50 APPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMK 105 (266)
Q Consensus 50 aP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~ 105 (266)
-|+.-|-.|++...++=.. ++-||--+..=. .+....++.+++..+.|+-+.
T Consensus 56 ~~p~~KF~FREllsrLE~~-~rqLr~~~s~~~---~~~~~~l~~~l~~~ikeI~~~ 107 (110)
T PF08919_consen 56 IQPHAKFAFRELLSRLESQ-SRQLRSCGSSNS---SPENQRLVSDLQNTIKEISNI 107 (110)
T ss_dssp S-CCCHHHHHHHHHHHHHH-HHHHCHSSSSSS---STT--THHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHH-HHHHHhccCCCC---CcccHHHHHHHHHHHHHHHHH
Confidence 3556888999988888554 344554222111 223334456666666665443
No 26
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=21.29 E-value=2.2e+02 Score=26.48 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHH
Q 024562 21 KNYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVH 96 (266)
Q Consensus 21 ~qY~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh 96 (266)
+.|+|||.+.+-.+.+.+ ++++ +.+ .++++.-...|.+++++|.-...-.+-....+++.++
T Consensus 77 kE~qkiG~af~~Ls~afe-~d~~-----~~~--------~~L~~Al~~tg~~y~~Ig~l~~~Qpk~D~~pl~d~L~ 138 (237)
T PF10456_consen 77 KEYQKIGQAFQSLSQAFE-LDQQ-----QAS--------MPLTNALKHTGDTYEEIGDLFAEQPKNDLIPLLDCLK 138 (237)
T ss_dssp HHHHHHHHHHHHHHHHHT-TS-------SSH--------CHHHHHHHHHHHHHHHHHHHHHTSGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHh-cCCc-----hhh--------hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 459999999988888654 3332 122 2344555567788888888776555544444444443
No 27
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=20.68 E-value=43 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHhhhhh
Q 024562 61 ELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMKIDQKSY 111 (266)
Q Consensus 61 ~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~I~~~s~ 111 (266)
-|..||..+.+.|+++|..+ ++.... ..+.+|+++||..++..|-
T Consensus 68 i~~~IG~~a~~~L~~~gI~~--~~~~~~----~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 68 YCLAIGGPAAAKVVAAKIHP--IKVNEP----ESISELLERLQKMLKGNPP 112 (119)
T ss_pred EEhhcCccHHHHHHHcCCee--EecCCC----ccHHHHHHHHHHHHcCCCC
Confidence 37789999999999988655 433222 2377999999999877663
No 28
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=20.20 E-value=1.2e+02 Score=23.94 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 50 APPEKRQVFASELQNVGNEGAKVLRKLGD 78 (266)
Q Consensus 50 aP~e~r~~~~~~c~~v~~e~akvLreL~~ 78 (266)
-|+++...|+-.|.+-|...+.|++||-.
T Consensus 41 i~EelH~r~K~~ca~~G~sisdvv~eLid 69 (76)
T PF09274_consen 41 IDEELHRRFKAACAKQGTSISDVVRELID 69 (76)
T ss_dssp EEHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 37899999999999999999999999854
Done!