Query 024562
Match_columns 266
No_of_seqs 128 out of 144
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 41.5 73 0.0025 28.8 7.4 61 51-114 49-109 (290)
2 1j1j_A Translin; testis/brain 36.1 2.2E+02 0.0075 24.9 10.0 30 49-78 27-56 (240)
3 3cue_B Transport protein parti 26.2 27 0.00094 32.1 1.9 28 205-232 55-82 (283)
4 3zrx_A AF1503 protein, osmolar 22.0 1.9E+02 0.0065 19.6 8.5 19 23-41 36-54 (115)
5 1or7_C Sigma-E factor negative 21.9 33 0.0011 26.1 1.4 13 20-32 33-45 (90)
6 1d0q_A DNA primase; zinc-bindi 20.1 54 0.0018 24.8 2.2 27 216-242 70-98 (103)
7 2yin_A DOCK2, dedicator of cyt 16.4 3.6E+02 0.012 25.4 7.4 72 36-107 341-428 (436)
8 1zv1_A Doublesex protein; UBA 16.1 42 0.0014 24.7 0.7 8 16-23 20-27 (65)
9 3h0g_K DNA-directed RNA polyme 15.1 39 0.0013 27.2 0.4 57 26-82 41-110 (123)
10 1p94_A Plasmid partition prote 12.9 60 0.0021 24.0 0.8 32 47-78 38-69 (76)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=41.46 E-value=73 Score=28.79 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHhhhhhhcc
Q 024562 51 PPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMKIDQKSYLLV 114 (266)
Q Consensus 51 P~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~I~~~s~Llv 114 (266)
=.+.|..+...+..|..+|.+++.-|-... .......++.++.+.+++++..+.+....+-
T Consensus 49 ~~d~REriik~sRdIt~~SK~~If~LhR~~---~~~~~~~il~ea~~~L~~i~~~~~~La~~l~ 109 (290)
T 3qb5_K 49 RHDKYERLVKLSRDITVESKRTIFLLHRIT---SAPDMEDILTESEIKLDGVRQKIFQVAQELS 109 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777788888888888888877654321 2223455666676666666666665444433
No 2
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=36.15 E-value=2.2e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 49 QAPPEKRQVFASELQNVGNEGAKVLRKLGD 78 (266)
Q Consensus 49 QaP~e~r~~~~~~c~~v~~e~akvLreL~~ 78 (266)
..=.+.|..+...+..|...|.+++.-|-.
T Consensus 27 d~~~d~REriik~sRdI~~~Sk~~I~~Lhr 56 (240)
T 1j1j_A 27 AAEQDIREEIRKVVQSLEQTAREILTLLQG 56 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888888888888887776543
No 3
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=26.21 E-value=27 Score=32.07 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 205 SSLSLATFASLLIEFVARLQNLVEAFEE 232 (266)
Q Consensus 205 saLslATFASLLIE~VARLe~vVdaVeE 232 (266)
.-+++.+|+-|+.|+|..+++-++.++|
T Consensus 55 ~~Vs~s~fafLf~EmV~~~~~~~~~~~e 82 (283)
T 3cue_B 55 QEASLSAMAFLFQEMISQLHRTCKTAGD 82 (283)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHCSSHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhcCchHH
Confidence 4688999999999999999988877766
No 4
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=22.04 E-value=1.9e+02 Score=19.59 Aligned_cols=19 Identities=0% Similarity=-0.094 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 024562 23 YVKVSGALRHCAFMVMAMH 41 (266)
Q Consensus 23 Y~KvG~~lR~CAy~v~AL~ 41 (266)
...+|.+.+.+--++..|.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~ 54 (115)
T 3zrx_A 36 ADEIGILAKSIERLRRSLK 54 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 5
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=21.85 E-value=33 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHH
Q 024562 20 WKNYVKVSGALRH 32 (266)
Q Consensus 20 W~qY~KvG~~lR~ 32 (266)
|..|.=||.+||.
T Consensus 33 W~~YhlIgd~lR~ 45 (90)
T 1or7_C 33 WESYHLIRDSMRG 45 (90)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999996
No 6
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=20.13 E-value=54 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhcCCCCC
Q 024562 216 LIEFVARLQN--LVEAFEELCEKANFKEP 242 (266)
Q Consensus 216 LIE~VARLe~--vVdaVeELs~lA~FKe~ 242 (266)
.|.||.++++ ..||++.|++.++..-+
T Consensus 70 ~i~fv~~~~~~sf~eA~~~La~~~gi~~~ 98 (103)
T 1d0q_A 70 AFTFLMDIEGIPFVEAAKRLAAKAGVDLS 98 (103)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCCCC
Confidence 3666777776 59999999999987543
No 7
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=16.37 E-value=3.6e+02 Score=25.44 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=42.6
Q ss_pred HHHHhhccccccCC-CChHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhccCCCcc---hHHHHHHHH
Q 024562 36 MVMAMHGCILSEIQ-APPEKRQVFASE------------LQNVGNEGAKVLRKLGDKVEKMERLSPEG---ILFEVHEAA 99 (266)
Q Consensus 36 ~v~AL~gcl~seiQ-aP~e~r~~~~~~------------c~~v~~e~akvLreL~~sik~M~~~s~~~---~l~evh~Aa 99 (266)
--++|+|||.+.+. .|...+..|=.+ ..++-.....-+.-++.+|+-..+.-+.+ ++..|.+.-
T Consensus 341 Lq~~LqG~V~~~VngG~~~y~~~Fl~~~~~~~~p~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~~~~~~h~~L~~~f 420 (436)
T 2yin_A 341 LSMLLNGIVDPAVMGGFAKYEKAFFTEEYVRDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEECF 420 (436)
T ss_dssp HHHHHHHHHCCSSSCCTHHHHHHHCSHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred HHHHhcccccccccccHHHHHHHhcCchhhhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34789999987654 477776544221 23333334444444555665555554443 456777788
Q ss_pred HHHHHHHh
Q 024562 100 EELQMKID 107 (266)
Q Consensus 100 eeLQ~~I~ 107 (266)
++|+.+|.
T Consensus 421 ~~l~~~le 428 (436)
T 2yin_A 421 KNLKMKVE 428 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 8
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=16.12 E-value=42 Score=24.67 Aligned_cols=8 Identities=50% Similarity=1.452 Sum_probs=6.0
Q ss_pred CCCCchhH
Q 024562 16 FNYPWKNY 23 (266)
Q Consensus 16 frhPW~qY 23 (266)
|+|||..-
T Consensus 20 f~YpWEmM 27 (65)
T 1zv1_A 20 FRYPWELM 27 (65)
T ss_dssp TTCCGGGH
T ss_pred hCCCHHHh
Confidence 67999853
No 9
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=15.08 E-value=39 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHHH----------HHHHHH-HhhccccccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024562 26 VSGALRH----------CAFMVM-AMHGCILSEIQAP--PEKRQVFASELQNVGNEGAKVLRKLGDKVEK 82 (266)
Q Consensus 26 vG~~lR~----------CAy~v~-AL~gcl~seiQaP--~e~r~~~~~~c~~v~~e~akvLreL~~sik~ 82 (266)
+|.+||+ |+|.|. =|..-+.=.||+- ......|++.|..+...|..+.+..-..++.
T Consensus 41 LgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~~~~~l~~~F~~~~~~ 110 (123)
T 3h0g_K 41 LANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMREWEL 110 (123)
T ss_dssp HHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666665 444443 1222333347762 2568999999999999999999998887764
No 10
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=12.91 E-value=60 Score=23.97 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 47 EIQAPPEKRQVFASELQNVGNEGAKVLRKLGD 78 (266)
Q Consensus 47 eiQaP~e~r~~~~~~c~~v~~e~akvLreL~~ 78 (266)
.|.-|+++.+.|+..|.+=+...+.++|||-.
T Consensus 38 ti~i~~~lh~rlK~~Aa~~g~Smsdvvreli~ 69 (76)
T 1p94_A 38 NVNFDEEKHTRFKAACARKGTSITDVVNQLVD 69 (76)
T ss_dssp CEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45579999999999999999999999999854
Done!