Query 024562
Match_columns 266
No_of_seqs 128 out of 144
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 10:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024562.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024562hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b0ha1 a.24.9.2 (A:1838-1973) 71.3 17 0.0012 26.9 10.0 80 25-107 44-125 (136)
2 d1j1ja_ a.118.16.1 (A:) Transl 60.1 27 0.002 27.8 9.5 64 50-113 16-79 (217)
3 d1or7c_ a.180.1.1 (C:) N-termi 30.6 9.5 0.0007 25.7 1.5 14 19-32 32-45 (66)
4 d2j3wb1 d.278.1.2 (B:21-188) T 26.3 10 0.00076 29.7 1.2 26 207-232 4-29 (168)
5 d1tlha_ a.150.1.1 (A:) Anti-si 23.5 28 0.0021 25.1 3.1 29 206-234 7-40 (89)
6 d1r8ea1 a.6.1.3 (A:3-120) Tran 20.8 1.8 0.00013 31.5 -4.2 64 22-86 2-70 (118)
7 d1d0qa_ g.41.3.2 (A:) Zinc-bin 20.3 25 0.0018 25.0 2.2 27 216-242 69-97 (102)
8 d1wa8a1 a.25.3.1 (A:1-99) ESAT 17.8 1.3E+02 0.0097 19.9 8.6 68 46-113 1-75 (99)
9 d1nexa1 a.157.1.1 (A:116-185) 15.5 49 0.0036 22.2 2.8 33 22-59 24-56 (70)
10 d1cnt1_ a.26.1.1 (1:) Ciliary 14.8 1.4E+02 0.01 23.3 5.8 51 212-262 95-150 (177)
No 1
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=71.29 E-value=17 Score=26.87 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhccccc--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 024562 25 KVSGALRHCAFMVMAMHGCILS--EIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEEL 102 (266)
Q Consensus 25 KvG~~lR~CAy~v~AL~gcl~s--eiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeL 102 (266)
++|.+.+.|+..+..|-.|... .....++.+..|-+.+..|+..++++|......-.+ +.-.+...++.+|++++
T Consensus 44 ~L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~~Lv~aak~~~~n---P~d~~~~~~L~~aAr~V 120 (136)
T d2b0ha1 44 ELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCS---PSDVYTKKELIECARRV 120 (136)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCcHHHHHHHHHHHHHH
Confidence 5888999999999888888763 223456789999999999999999888776554442 22223346788888887
Q ss_pred HHHHh
Q 024562 103 QMKID 107 (266)
Q Consensus 103 Q~~I~ 107 (266)
-..|.
T Consensus 121 ~esv~ 125 (136)
T d2b0ha1 121 SEKVS 125 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77663
No 2
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.10 E-value=27 Score=27.80 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHhhhhhhc
Q 024562 50 APPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPEGILFEVHEAAEELQMKIDQKSYLL 113 (266)
Q Consensus 50 aP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~~~l~evh~AaeeLQ~~I~~~s~Ll 113 (266)
.=.+.|..+...|..+...|.++...|-..-++.......+.+.++.+..++++..+++..-.+
T Consensus 16 ~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~l~~~~ 79 (217)
T d1j1ja_ 16 AEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456777777788888877777777775533322222222345555555556666655544444
No 3
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=30.57 E-value=9.5 Score=25.72 Aligned_cols=14 Identities=21% Similarity=0.722 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHH
Q 024562 19 PWKNYVKVSGALRH 32 (266)
Q Consensus 19 PW~qY~KvG~~lR~ 32 (266)
=|..|.-||.+||.
T Consensus 32 ~W~~Yhli~d~lr~ 45 (66)
T d1or7c_ 32 TWESYHLIRDSMRG 45 (66)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 39999999999995
No 4
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=26.31 E-value=10 Score=29.67 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 024562 207 LSLATFASLLIEFVARLQNLVEAFEE 232 (266)
Q Consensus 207 LslATFASLLIE~VARLe~vVdaVeE 232 (266)
+|+.+|+-|+.|+|..++.-++.++|
T Consensus 4 Vs~s~f~~L~~ElV~y~~~~~~~~~e 29 (168)
T d2j3wb1 4 VSVSAFALLFSEMVQYCQSRVYSVSE 29 (168)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hCHHHHHHHHHHHHHHHHhccCCHHH
Confidence 67889999999999988776444444
No 5
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=23.52 E-value=28 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=22.0
Q ss_pred cchHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 024562 206 SLSLATFASLLI-----EFVARLQNLVEAFEELC 234 (266)
Q Consensus 206 aLslATFASLLI-----E~VARLe~vVdaVeELs 234 (266)
+.-.+|.||||| |+|.+=++.|+=..|||
T Consensus 7 v~eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G 40 (89)
T d1tlha_ 7 VREIITVASILIKFSREDIVENRANFIAFLNEIG 40 (89)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccHHHHHHhHHHHHHHHHHhC
Confidence 345789999999 56777777777777765
No 6
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=20.78 E-value=1.8 Score=31.48 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccCCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 024562 22 NYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKR-----QVFASELQNVGNEGAKVLRKLGDKVEKMERL 86 (266)
Q Consensus 22 qY~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r-----~~~~~~c~~v~~e~akvLreL~~sik~M~~~ 86 (266)
.|-+||.+.+.|.-++.+|.=|-.-.+=.|...| +.|.+.....- ...+.||++|-+|+.++..
T Consensus 2 ~yytI~evA~~~gvs~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~~l~~l-~~I~~lr~~g~sl~eIk~~ 70 (118)
T d1r8ea1 2 SYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHL-DLIKSLKYIGTPLEEMKKA 70 (118)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHH-HHHHHHHHTTCCHHHHHHH
T ss_pred CcccHHHHHHHHCcCHHHHHHHHHcCCcccccccCCCCcccccHHHHHHH-HHHHHHHHcCCCHHHHHHH
Confidence 5789999999999999998766543322332221 12222211111 3456788999888887765
No 7
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.31 E-value=25 Score=24.97 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHhhcCCCCC
Q 024562 216 LIEFVARLQNL--VEAFEELCEKANFKEP 242 (266)
Q Consensus 216 LIE~VARLe~v--VdaVeELs~lA~FKe~ 242 (266)
.|.||.+++++ .||++.|++.++..=|
T Consensus 69 ~i~fv~~~~~~sf~eAv~~La~~~gi~l~ 97 (102)
T d1d0qa_ 69 AFTFLMDIEGIPFVEAAKRLAAKAGVDLS 97 (102)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhCCCCC
Confidence 46777777774 8999999999998533
No 8
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.84 E-value=1.3e+02 Score=19.91 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=51.2
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-------chHHHHHHHHHHHHHHHhhhhhhc
Q 024562 46 SEIQAPPEKRQVFASELQNVGNEGAKVLRKLGDKVEKMERLSPE-------GILFEVHEAAEELQMKIDQKSYLL 113 (266)
Q Consensus 46 seiQaP~e~r~~~~~~c~~v~~e~akvLreL~~sik~M~~~s~~-------~~l~evh~AaeeLQ~~I~~~s~Ll 113 (266)
++|+.-++--..+...+...+.+.-..|.+|-..|..+...-.. ....+.+.++.+|+..|+...-.|
T Consensus 1 a~ikvd~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L 75 (99)
T d1wa8a1 1 AEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNI 75 (99)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46787676667778889999999999999999999999865222 223566778888888776666554
No 9
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.49 E-value=49 Score=22.21 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccCCCChHHHHHHH
Q 024562 22 NYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFA 59 (266)
Q Consensus 22 qY~KvG~~lR~CAy~v~AL~gcl~seiQaP~e~r~~~~ 59 (266)
+|+.|-.++-.|.-+|--+-- -++|.|+|..|.
T Consensus 24 nyL~I~~Ll~l~c~~vA~~ik-----gkt~eeiR~~f~ 56 (70)
T d1nexa1 24 NYLNIKPLLDAGCKVVAEMIR-----GRSPEEIRRTFN 56 (70)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT-----TCCHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHHHHHHc-----cCCHHHHHHHhC
Confidence 688888888888777744332 257888888774
No 10
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.83 E-value=1.4e+02 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CcCCch-hhhhhhhhh
Q 024562 212 FASLLIEFVARLQNLVEAFEELCEKANFKEPVEPPI----GKGEVG-FWSRLSRCF 262 (266)
Q Consensus 212 FASLLIE~VARLe~vVdaVeELs~lA~FKe~~~~~~----~~~~~~-~~~~~~~~~ 262 (266)
+..-|=++..++++++..++++-..-.+.-|.+++. +..++| |-.+++.|.
T Consensus 95 l~~~L~~~~~~~~gL~~~i~~im~~Lg~~~p~e~~~~~~~~~~~~~~F~kK~~G~~ 150 (177)
T d1cnt1_ 95 FHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLK 150 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhHHHHHhcCcc
Confidence 445567788899999999999999999886543333 233334 666666553
Done!