Query 024565
Match_columns 265
No_of_seqs 142 out of 1479
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00023 glyceraldehyde-3-phos 100.0 2.1E-58 4.6E-63 408.4 27.4 261 3-265 2-265 (337)
2 PLN02358 glyceraldehyde-3-phos 100.0 4.1E-58 9E-63 408.0 28.7 263 3-265 5-267 (338)
3 PRK15425 gapA glyceraldehyde-3 100.0 3.6E-58 7.8E-63 406.0 28.1 259 3-265 2-261 (331)
4 PLN02272 glyceraldehyde-3-phos 100.0 2.2E-57 4.9E-62 409.3 27.9 262 3-265 85-346 (421)
5 PTZ00434 cytosolic glyceraldeh 100.0 1.4E-57 3.1E-62 402.2 25.9 264 1-265 1-279 (361)
6 PRK07403 glyceraldehyde-3-phos 100.0 1.1E-56 2.3E-61 397.1 26.7 259 3-265 1-264 (337)
7 PLN03096 glyceraldehyde-3-phos 100.0 3.6E-56 7.7E-61 399.7 27.1 260 3-265 60-322 (395)
8 TIGR01534 GAPDH-I glyceraldehy 100.0 7.5E-56 1.6E-60 392.0 27.1 258 5-265 1-262 (327)
9 PRK08955 glyceraldehyde-3-phos 100.0 1.5E-55 3.2E-60 391.2 26.1 258 3-265 2-262 (334)
10 PRK07729 glyceraldehyde-3-phos 100.0 4.5E-55 9.8E-60 387.1 27.2 259 3-265 2-262 (343)
11 PLN02237 glyceraldehyde-3-phos 100.0 2.9E-55 6.3E-60 396.0 26.3 260 3-265 75-340 (442)
12 PRK13535 erythrose 4-phosphate 100.0 2.5E-54 5.4E-59 383.2 25.9 259 3-265 1-264 (336)
13 PTZ00353 glycosomal glyceralde 100.0 1.1E-53 2.5E-58 378.0 25.9 261 3-265 2-265 (342)
14 COG0057 GapA Glyceraldehyde-3- 100.0 1.9E-53 4.1E-58 369.2 26.2 259 3-265 1-262 (335)
15 TIGR01532 E4PD_g-proteo D-eryt 100.0 5.8E-52 1.2E-56 368.0 27.0 257 5-265 1-262 (325)
16 PRK08289 glyceraldehyde-3-phos 100.0 5E-52 1.1E-56 375.6 26.0 261 3-265 127-399 (477)
17 PRK08040 putative semialdehyde 100.0 1.3E-41 2.8E-46 303.2 23.0 232 2-265 3-265 (336)
18 PRK14874 aspartate-semialdehyd 100.0 7.1E-40 1.5E-44 294.0 20.8 230 3-265 1-266 (334)
19 PRK05671 aspartate-semialdehyd 100.0 1.2E-39 2.7E-44 291.1 21.9 232 3-265 4-266 (336)
20 COG0002 ArgC Acetylglutamate s 100.0 3.5E-40 7.6E-45 288.4 17.2 238 2-265 1-267 (349)
21 PRK06728 aspartate-semialdehyd 100.0 2.2E-39 4.7E-44 288.9 22.6 232 3-265 5-274 (347)
22 PLN02383 aspartate semialdehyd 100.0 6E-39 1.3E-43 287.8 19.2 232 3-265 7-274 (344)
23 TIGR01296 asd_B aspartate-semi 100.0 1.9E-38 4.2E-43 284.7 19.5 230 5-265 1-269 (339)
24 PRK06598 aspartate-semialdehyd 100.0 3E-38 6.6E-43 283.0 20.3 232 3-265 1-297 (369)
25 PRK06901 aspartate-semialdehyd 100.0 4.1E-37 8.8E-42 268.9 21.0 229 1-265 1-251 (322)
26 COG0136 Asd Aspartate-semialde 100.0 4.7E-37 1E-41 268.9 20.5 232 3-264 1-265 (334)
27 PRK11863 N-acetyl-gamma-glutam 100.0 6.2E-37 1.3E-41 269.9 18.7 216 3-265 2-233 (313)
28 TIGR01851 argC_other N-acetyl- 100.0 1E-36 2.3E-41 266.7 17.8 215 4-265 2-234 (310)
29 TIGR01850 argC N-acetyl-gamma- 100.0 1.3E-36 2.8E-41 273.9 18.6 235 4-265 1-264 (346)
30 PRK00436 argC N-acetyl-gamma-g 100.0 2.7E-36 5.8E-41 271.7 20.2 235 3-265 2-261 (343)
31 TIGR01745 asd_gamma aspartate- 100.0 7.9E-36 1.7E-40 266.6 18.7 231 4-265 1-295 (366)
32 KOG0657 Glyceraldehyde 3-phosp 100.0 4.8E-37 1E-41 258.4 9.5 238 25-265 8-245 (285)
33 PRK08664 aspartate-semialdehyd 100.0 1E-35 2.2E-40 268.8 18.8 235 1-265 1-264 (349)
34 TIGR01546 GAPDH-II_archae glyc 100.0 3.9E-35 8.4E-40 260.0 21.5 232 6-265 1-239 (333)
35 TIGR00978 asd_EA aspartate-sem 100.0 4.1E-35 9E-40 264.0 21.5 233 4-265 1-261 (341)
36 PRK04207 glyceraldehyde-3-phos 100.0 5.6E-35 1.2E-39 262.5 21.3 233 3-265 1-242 (341)
37 PLN02968 Probable N-acetyl-gam 100.0 1.2E-34 2.7E-39 263.0 18.1 231 3-265 38-299 (381)
38 PF00044 Gp_dh_N: Glyceraldehy 100.0 1E-33 2.2E-38 225.0 12.5 149 4-154 1-151 (151)
39 smart00846 Gp_dh_N Glyceraldeh 100.0 5.2E-30 1.1E-34 204.0 16.6 148 4-154 1-149 (149)
40 KOG4354 N-acetyl-gamma-glutamy 99.9 7.2E-27 1.6E-31 193.7 11.1 229 3-265 19-259 (340)
41 KOG4777 Aspartate-semialdehyde 99.9 1.1E-23 2.3E-28 176.2 9.9 236 1-264 1-273 (361)
42 PF02800 Gp_dh_C: Glyceraldehy 99.8 1.8E-18 3.9E-23 139.0 11.5 106 159-265 1-106 (157)
43 PRK08300 acetaldehyde dehydrog 99.7 5.1E-17 1.1E-21 142.4 8.2 152 1-184 2-160 (302)
44 PF01118 Semialdhyde_dh: Semia 99.7 6.4E-17 1.4E-21 124.7 6.1 114 5-143 1-119 (121)
45 TIGR03215 ac_ald_DH_ac acetald 99.6 4.8E-15 1E-19 129.6 11.0 153 3-185 1-155 (285)
46 PF02774 Semialdhyde_dhC: Semi 99.4 1.5E-12 3.3E-17 107.5 8.7 101 163-264 1-129 (184)
47 smart00859 Semialdhyde_dh Semi 99.0 3.7E-09 8E-14 81.3 8.7 111 5-143 1-121 (122)
48 TIGR01921 DAP-DH diaminopimela 98.9 2.9E-09 6.4E-14 94.6 7.8 90 1-124 1-90 (324)
49 PRK13303 L-aspartate dehydroge 98.8 1.2E-08 2.7E-13 89.0 8.3 90 3-123 1-90 (265)
50 PF01408 GFO_IDH_MocA: Oxidore 98.7 1.5E-08 3.3E-13 77.3 5.5 89 4-123 1-91 (120)
51 PRK11579 putative oxidoreducta 98.7 3E-08 6.5E-13 89.8 8.2 91 1-123 1-93 (346)
52 PRK13302 putative L-aspartate 98.7 3.4E-08 7.4E-13 86.5 7.9 91 1-123 4-96 (271)
53 COG0673 MviM Predicted dehydro 98.6 8.1E-08 1.8E-12 86.3 7.0 93 1-123 1-96 (342)
54 TIGR00036 dapB dihydrodipicoli 98.6 1.1E-07 2.5E-12 83.0 7.0 96 3-123 1-97 (266)
55 PF01113 DapB_N: Dihydrodipico 98.5 1.4E-07 3.1E-12 72.8 5.4 89 4-119 1-93 (124)
56 PRK13301 putative L-aspartate 98.5 2.3E-07 4.9E-12 80.0 7.1 90 3-124 2-93 (267)
57 PRK00048 dihydrodipicolinate r 98.5 3.4E-07 7.4E-12 79.6 7.7 88 3-123 1-89 (257)
58 PRK13304 L-aspartate dehydroge 98.5 3.4E-07 7.3E-12 80.0 7.4 90 3-124 1-92 (265)
59 PRK10206 putative oxidoreducta 98.5 2.1E-07 4.4E-12 84.3 6.1 91 3-123 1-93 (344)
60 COG0289 DapB Dihydrodipicolina 98.5 1.2E-06 2.6E-11 75.1 9.5 98 2-123 1-99 (266)
61 COG4569 MhpF Acetaldehyde dehy 98.4 4.4E-07 9.4E-12 74.6 6.4 139 2-169 3-145 (310)
62 COG1712 Predicted dinucleotide 98.4 1.3E-06 2.7E-11 73.0 7.7 89 4-124 1-91 (255)
63 PRK06349 homoserine dehydrogen 98.3 1E-06 2.2E-11 82.0 7.0 92 1-123 1-102 (426)
64 PRK06270 homoserine dehydrogen 98.3 2.1E-06 4.6E-11 77.6 7.9 102 3-123 2-123 (341)
65 PLN02775 Probable dihydrodipic 98.0 2.4E-05 5.2E-10 68.4 8.2 95 3-122 11-109 (286)
66 TIGR01761 thiaz-red thiazoliny 98.0 1.3E-05 2.7E-10 72.5 6.7 90 2-123 2-95 (343)
67 PF03447 NAD_binding_3: Homose 97.8 2.1E-05 4.5E-10 59.9 3.4 80 10-118 1-84 (117)
68 PF10727 Rossmann-like: Rossma 97.7 3.5E-05 7.6E-10 59.7 4.2 81 3-116 10-91 (127)
69 PRK05472 redox-sensing transcr 97.7 0.00011 2.4E-09 62.0 7.3 92 3-123 84-176 (213)
70 PRK08374 homoserine dehydrogen 97.7 9E-05 2E-09 66.9 6.2 109 3-123 2-120 (336)
71 KOG2741 Dimeric dihydrodiol de 97.6 0.00013 2.9E-09 64.8 6.6 93 3-123 6-101 (351)
72 PRK06813 homoserine dehydrogen 97.6 0.00012 2.5E-09 66.3 6.3 35 3-37 2-45 (346)
73 PRK06392 homoserine dehydrogen 97.6 0.00026 5.6E-09 63.6 8.2 34 4-37 1-41 (326)
74 COG0460 ThrA Homoserine dehydr 97.6 0.00025 5.5E-09 63.3 7.7 99 1-126 1-113 (333)
75 COG4091 Predicted homoserine d 97.6 0.00014 3E-09 64.7 6.0 109 3-123 17-131 (438)
76 PF02629 CoA_binding: CoA bind 97.6 0.00014 3E-09 53.4 5.1 90 3-123 3-92 (96)
77 PLN02819 lysine-ketoglutarate 97.6 0.00015 3.2E-09 73.8 6.7 96 3-123 569-677 (1042)
78 TIGR02130 dapB_plant dihydrodi 97.5 0.00033 7E-09 61.1 6.6 91 4-123 1-98 (275)
79 COG2344 AT-rich DNA-binding pr 97.4 0.00033 7.2E-09 57.1 5.6 92 2-122 83-175 (211)
80 PRK07634 pyrroline-5-carboxyla 97.4 0.00038 8.2E-09 59.7 5.9 84 1-114 2-87 (245)
81 KOG4039 Serine/threonine kinas 97.3 0.00078 1.7E-08 54.7 6.4 36 1-36 16-52 (238)
82 COG1748 LYS9 Saccharopine dehy 97.3 0.00093 2E-08 61.1 7.4 123 3-155 1-124 (389)
83 PF03807 F420_oxidored: NADP o 97.1 0.0006 1.3E-08 49.7 4.2 88 5-124 1-92 (96)
84 PLN02700 homoserine dehydrogen 97.1 0.0016 3.6E-08 59.4 7.6 37 1-37 1-45 (377)
85 PRK11880 pyrroline-5-carboxyla 97.1 0.0011 2.4E-08 57.6 5.9 81 3-115 2-84 (267)
86 PRK05447 1-deoxy-D-xylulose 5- 97.0 0.0023 4.9E-08 58.5 7.1 112 3-123 1-120 (385)
87 PTZ00431 pyrroline carboxylate 97.0 0.0017 3.6E-08 56.5 6.0 26 1-26 1-26 (260)
88 PF13460 NAD_binding_10: NADH( 96.8 0.0026 5.5E-08 51.7 5.3 90 6-126 1-99 (183)
89 PF03446 NAD_binding_2: NAD bi 96.7 0.0016 3.4E-08 52.6 3.8 33 3-37 1-33 (163)
90 PF05368 NmrA: NmrA-like famil 96.7 0.00095 2.1E-08 56.7 2.2 96 6-126 1-103 (233)
91 PF03435 Saccharop_dh: Sacchar 96.6 0.0039 8.5E-08 57.2 5.7 92 6-118 1-92 (386)
92 PRK07417 arogenate dehydrogena 96.6 0.005 1.1E-07 54.1 6.0 30 4-34 1-30 (279)
93 PRK07679 pyrroline-5-carboxyla 96.5 0.0059 1.3E-07 53.6 6.3 26 1-26 1-26 (279)
94 PLN02256 arogenate dehydrogena 96.5 0.0048 1E-07 55.0 5.4 33 1-34 34-66 (304)
95 PRK09466 metL bifunctional asp 96.5 0.01 2.2E-07 59.7 8.1 37 1-37 456-501 (810)
96 cd01076 NAD_bind_1_Glu_DH NAD( 96.5 0.0074 1.6E-07 51.5 6.2 35 2-37 30-64 (227)
97 PF13380 CoA_binding_2: CoA bi 96.4 0.016 3.4E-07 44.1 7.2 81 4-123 1-85 (116)
98 PRK12491 pyrroline-5-carboxyla 96.4 0.0096 2.1E-07 52.2 6.8 90 1-124 1-95 (272)
99 PRK06223 malate dehydrogenase; 96.4 0.016 3.5E-07 51.5 8.1 33 3-36 2-34 (307)
100 COG2085 Predicted dinucleotide 96.3 0.0095 2.1E-07 49.8 5.8 91 3-126 1-93 (211)
101 PRK06476 pyrroline-5-carboxyla 96.3 0.0066 1.4E-07 52.6 5.2 33 4-36 1-34 (258)
102 PRK09436 thrA bifunctional asp 96.3 0.013 2.9E-07 59.0 7.9 103 2-126 464-578 (819)
103 CHL00194 ycf39 Ycf39; Provisio 96.3 0.012 2.5E-07 52.5 6.9 32 4-36 1-33 (317)
104 COG2910 Putative NADH-flavin r 96.3 0.023 4.9E-07 46.6 7.7 32 4-36 1-33 (211)
105 PRK07502 cyclohexadienyl dehyd 96.3 0.0091 2E-07 53.1 6.0 36 2-37 5-40 (307)
106 PRK11559 garR tartronate semia 96.2 0.0075 1.6E-07 53.3 5.1 32 3-36 2-33 (296)
107 PRK07819 3-hydroxybutyryl-CoA 96.2 0.032 7E-07 49.2 9.0 30 3-33 5-34 (286)
108 PRK06249 2-dehydropantoate 2-r 96.2 0.029 6.2E-07 50.1 8.6 33 1-34 3-35 (313)
109 PRK06928 pyrroline-5-carboxyla 96.2 0.013 2.8E-07 51.5 6.2 32 4-35 2-36 (277)
110 PRK00094 gpsA NAD(P)H-dependen 96.1 0.014 3E-07 52.0 6.3 31 4-36 2-32 (325)
111 PRK08818 prephenate dehydrogen 96.1 0.017 3.6E-07 52.9 6.6 70 2-115 3-73 (370)
112 COG0287 TyrA Prephenate dehydr 96.0 0.029 6.2E-07 49.4 7.7 25 2-26 2-26 (279)
113 PRK08507 prephenate dehydrogen 96.0 0.016 3.5E-07 50.7 6.1 79 4-115 1-80 (275)
114 cd05211 NAD_bind_Glu_Leu_Phe_V 95.9 0.045 9.8E-07 46.4 8.2 36 2-38 22-57 (217)
115 PRK08229 2-dehydropantoate 2-r 95.9 0.048 1E-06 49.1 8.9 31 3-34 2-32 (341)
116 PLN02688 pyrroline-5-carboxyla 95.9 0.024 5.3E-07 49.1 6.6 23 4-26 1-23 (266)
117 PRK07680 late competence prote 95.8 0.019 4E-07 50.3 5.7 34 4-37 1-36 (273)
118 TIGR02717 AcCoA-syn-alpha acet 95.8 0.045 9.7E-07 51.5 8.3 83 2-123 6-94 (447)
119 PRK08618 ornithine cyclodeamin 95.7 0.014 3E-07 52.5 4.5 87 4-118 128-215 (325)
120 PF00056 Ldh_1_N: lactate/mala 95.7 0.019 4.1E-07 45.2 4.7 34 4-37 1-35 (141)
121 PLN02696 1-deoxy-D-xylulose-5- 95.6 0.034 7.5E-07 51.8 6.9 112 3-123 57-178 (454)
122 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.041 9E-07 44.0 6.3 91 5-115 1-91 (157)
123 PTZ00117 malate dehydrogenase; 95.5 0.076 1.6E-06 47.6 8.5 34 3-37 5-38 (319)
124 cd05290 LDH_3 A subgroup of L- 95.5 0.062 1.3E-06 48.0 7.8 33 5-37 1-33 (307)
125 PTZ00325 malate dehydrogenase; 95.5 0.1 2.2E-06 46.9 9.1 35 2-36 7-42 (321)
126 PLN02712 arogenate dehydrogena 95.4 0.026 5.6E-07 55.6 5.5 31 3-34 52-82 (667)
127 cd05293 LDH_1 A subgroup of L- 95.4 0.03 6.6E-07 50.0 5.5 35 3-37 3-37 (312)
128 PRK14619 NAD(P)H-dependent gly 95.4 0.076 1.7E-06 47.3 8.0 28 3-31 4-31 (308)
129 PRK09414 glutamate dehydrogena 95.4 0.072 1.6E-06 49.9 8.0 103 3-123 232-341 (445)
130 PTZ00082 L-lactate dehydrogena 95.3 0.034 7.3E-07 50.0 5.7 36 3-39 6-41 (321)
131 TIGR01915 npdG NADPH-dependent 95.3 0.03 6.4E-07 47.3 5.0 31 4-36 1-32 (219)
132 COG0345 ProC Pyrroline-5-carbo 95.3 0.031 6.7E-07 48.7 5.0 90 3-125 1-94 (266)
133 PRK06046 alanine dehydrogenase 95.3 0.024 5.2E-07 51.0 4.5 35 4-38 130-164 (326)
134 PRK14618 NAD(P)H-dependent gly 95.3 0.041 8.9E-07 49.4 6.0 31 3-34 4-34 (328)
135 PLN02602 lactate dehydrogenase 95.2 0.037 8E-07 50.3 5.5 34 4-37 38-71 (350)
136 PRK00066 ldh L-lactate dehydro 95.2 0.15 3.2E-06 45.7 9.3 35 3-37 6-40 (315)
137 TIGR01763 MalateDH_bact malate 95.1 0.095 2.1E-06 46.7 7.9 33 4-37 2-34 (305)
138 TIGR03649 ergot_EASG ergot alk 95.1 0.068 1.5E-06 46.6 6.8 31 5-36 1-32 (285)
139 PRK15461 NADH-dependent gamma- 95.0 0.028 6.1E-07 49.8 4.2 32 4-37 2-33 (296)
140 cd05294 LDH-like_MDH_nadp A la 95.0 0.096 2.1E-06 46.8 7.6 31 4-34 1-33 (309)
141 PRK06522 2-dehydropantoate 2-r 95.0 0.096 2.1E-06 46.1 7.6 31 4-35 1-31 (304)
142 PLN00016 RNA-binding protein; 95.0 0.079 1.7E-06 48.4 7.2 33 3-36 52-89 (378)
143 COG0039 Mdh Malate/lactate deh 95.0 0.17 3.8E-06 45.1 9.0 33 4-36 1-33 (313)
144 PLN02712 arogenate dehydrogena 95.0 0.066 1.4E-06 52.8 6.8 31 3-34 369-399 (667)
145 PRK05479 ketol-acid reductoiso 94.9 0.059 1.3E-06 48.5 5.8 31 3-34 17-47 (330)
146 TIGR00872 gnd_rel 6-phosphoglu 94.8 0.042 9.1E-07 48.7 4.7 31 4-36 1-31 (298)
147 TIGR03026 NDP-sugDHase nucleot 94.8 0.1 2.2E-06 48.4 7.4 30 4-34 1-30 (411)
148 PRK11199 tyrA bifunctional cho 94.7 0.12 2.6E-06 47.5 7.4 24 3-26 98-122 (374)
149 TIGR02371 ala_DH_arch alanine 94.6 0.045 9.8E-07 49.2 4.4 87 4-118 129-216 (325)
150 cd05213 NAD_bind_Glutamyl_tRNA 94.6 0.085 1.8E-06 47.1 6.1 34 3-37 178-211 (311)
151 PLN00106 malate dehydrogenase 94.6 0.22 4.7E-06 44.8 8.7 34 3-36 18-52 (323)
152 PRK15182 Vi polysaccharide bio 94.6 0.1 2.2E-06 48.7 6.8 30 3-34 6-35 (425)
153 PLN00112 malate dehydrogenase 94.5 0.18 3.9E-06 47.2 8.3 23 3-25 100-123 (444)
154 PRK06444 prephenate dehydrogen 94.5 0.095 2.1E-06 43.7 5.7 22 4-25 1-23 (197)
155 PRK08268 3-hydroxy-acyl-CoA de 94.5 0.15 3.2E-06 48.8 7.7 31 4-36 8-38 (507)
156 cd01065 NAD_bind_Shikimate_DH 94.4 0.068 1.5E-06 42.1 4.7 34 3-37 19-52 (155)
157 PRK05086 malate dehydrogenase; 94.4 0.32 6.9E-06 43.5 9.3 33 4-36 1-35 (312)
158 PRK12921 2-dehydropantoate 2-r 94.4 0.17 3.6E-06 44.7 7.5 30 4-34 1-30 (305)
159 cd01337 MDH_glyoxysomal_mitoch 94.4 0.26 5.7E-06 44.0 8.7 33 4-36 1-34 (310)
160 cd05292 LDH_2 A subgroup of L- 94.4 0.1 2.3E-06 46.5 6.1 34 4-37 1-34 (308)
161 PRK05678 succinyl-CoA syntheta 94.3 0.19 4.1E-06 44.5 7.6 85 3-123 8-95 (291)
162 TIGR02853 spore_dpaA dipicolin 94.3 0.061 1.3E-06 47.5 4.4 31 4-36 152-182 (287)
163 PRK13403 ketol-acid reductoiso 94.1 0.14 3E-06 45.9 6.2 33 3-36 16-48 (335)
164 COG3804 Uncharacterized conser 94.0 0.085 1.8E-06 46.0 4.6 35 3-37 2-36 (350)
165 PRK08605 D-lactate dehydrogena 94.0 0.11 2.3E-06 46.9 5.4 30 3-32 146-175 (332)
166 PRK12490 6-phosphogluconate de 94.0 0.11 2.3E-06 46.2 5.3 31 5-37 2-32 (299)
167 PRK11064 wecC UDP-N-acetyl-D-m 93.9 0.077 1.7E-06 49.4 4.6 33 1-34 1-33 (415)
168 PRK09599 6-phosphogluconate de 93.9 0.13 2.9E-06 45.6 5.9 32 4-37 1-32 (301)
169 PRK05808 3-hydroxybutyryl-CoA 93.9 0.081 1.8E-06 46.4 4.4 32 1-33 1-32 (282)
170 TIGR01505 tartro_sem_red 2-hyd 93.9 0.054 1.2E-06 47.7 3.3 31 5-37 1-31 (291)
171 PLN02657 3,8-divinyl protochlo 93.8 0.22 4.7E-06 45.9 7.3 32 3-35 60-92 (390)
172 cd05291 HicDH_like L-2-hydroxy 93.8 0.22 4.8E-06 44.3 7.1 32 5-36 2-33 (306)
173 PRK07574 formate dehydrogenase 93.8 0.083 1.8E-06 48.6 4.5 29 4-33 193-221 (385)
174 PF01488 Shikimate_DH: Shikima 93.8 0.083 1.8E-06 41.1 3.9 34 3-37 12-45 (135)
175 COG1091 RfbD dTDP-4-dehydrorha 93.7 0.079 1.7E-06 46.5 4.0 31 5-37 2-33 (281)
176 PRK08306 dipicolinate synthase 93.7 0.13 2.9E-06 45.6 5.5 30 3-33 152-181 (296)
177 COG0240 GpsA Glycerol-3-phosph 93.7 0.17 3.7E-06 45.3 6.1 90 3-113 1-91 (329)
178 PRK15469 ghrA bifunctional gly 93.7 0.1 2.3E-06 46.6 4.9 30 4-34 137-166 (312)
179 PRK07531 bifunctional 3-hydrox 93.7 0.19 4.2E-06 47.8 6.9 32 4-37 5-36 (495)
180 PRK15059 tartronate semialdehy 93.7 0.1 2.2E-06 46.2 4.6 30 5-36 2-31 (292)
181 PRK08655 prephenate dehydrogen 93.6 0.13 2.9E-06 48.2 5.6 29 4-33 1-30 (437)
182 PRK06545 prephenate dehydrogen 93.6 0.14 3.1E-06 46.6 5.6 22 5-26 2-23 (359)
183 cd00300 LDH_like L-lactate deh 93.5 0.35 7.6E-06 43.0 7.8 32 6-37 1-32 (300)
184 TIGR01019 sucCoAalpha succinyl 93.4 0.32 6.9E-06 43.0 7.3 87 3-123 6-93 (286)
185 PF02826 2-Hacid_dh_C: D-isome 93.4 0.14 3E-06 41.8 4.7 33 3-36 36-68 (178)
186 PTZ00345 glycerol-3-phosphate 93.4 0.34 7.4E-06 44.3 7.6 24 3-26 11-34 (365)
187 TIGR01759 MalateDH-SF1 malate 93.4 0.46 1E-05 42.7 8.4 28 2-29 2-30 (323)
188 COG1893 ApbA Ketopantoate redu 93.3 0.41 8.9E-06 42.7 7.9 85 4-115 1-89 (307)
189 PRK06718 precorrin-2 dehydroge 93.3 1.8 4E-05 36.1 11.4 92 3-126 10-101 (202)
190 TIGR01772 MDH_euk_gproteo mala 93.2 0.58 1.3E-05 41.9 8.8 33 5-37 1-34 (312)
191 PF02670 DXP_reductoisom: 1-de 93.2 0.2 4.3E-06 38.8 5.0 36 6-42 1-38 (129)
192 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.12 2.6E-06 42.6 4.0 30 4-34 1-30 (185)
193 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.1 0.1 2.2E-06 49.9 3.9 30 3-33 5-34 (503)
194 TIGR00465 ilvC ketol-acid redu 93.1 0.28 6.1E-06 43.9 6.5 33 2-35 2-34 (314)
195 PF04321 RmlD_sub_bind: RmlD s 93.0 0.23 5E-06 43.7 5.9 31 4-35 1-32 (286)
196 PRK12439 NAD(P)H-dependent gly 92.9 0.17 3.6E-06 45.9 4.9 24 3-26 7-30 (341)
197 COG0111 SerA Phosphoglycerate 92.9 0.16 3.4E-06 45.8 4.6 30 4-34 143-172 (324)
198 cd01338 MDH_choloroplast_like 92.9 0.28 6E-06 44.1 6.2 34 3-36 2-41 (322)
199 PLN03139 formate dehydrogenase 92.6 0.15 3.2E-06 47.0 4.1 31 4-36 200-230 (386)
200 COG0569 TrkA K+ transport syst 92.6 0.31 6.7E-06 41.5 5.8 32 4-36 1-32 (225)
201 COG0677 WecC UDP-N-acetyl-D-ma 92.6 0.26 5.6E-06 45.2 5.5 29 4-33 10-38 (436)
202 TIGR01470 cysG_Nterm siroheme 92.4 5.7 0.00012 33.2 13.2 85 3-118 9-95 (205)
203 KOG2742 Predicted oxidoreducta 92.2 0.078 1.7E-06 47.3 1.7 92 1-123 1-92 (367)
204 KOG1502 Flavonol reductase/cin 92.1 0.45 9.8E-06 42.7 6.4 36 3-39 6-42 (327)
205 PRK06719 precorrin-2 dehydroge 92.0 2.6 5.5E-05 33.7 10.2 30 3-33 13-42 (157)
206 PLN00203 glutamyl-tRNA reducta 92.0 0.51 1.1E-05 45.2 7.1 34 3-37 266-299 (519)
207 PRK01438 murD UDP-N-acetylmura 91.9 0.82 1.8E-05 43.2 8.4 90 3-123 16-106 (480)
208 PRK05708 2-dehydropantoate 2-r 91.9 1 2.2E-05 40.0 8.6 32 3-35 2-33 (305)
209 PF02558 ApbA: Ketopantoate re 91.9 0.64 1.4E-05 36.4 6.6 30 6-36 1-30 (151)
210 TIGR01757 Malate-DH_plant mala 91.8 0.32 6.9E-06 44.8 5.3 27 3-29 44-71 (387)
211 TIGR00243 Dxr 1-deoxy-D-xylulo 91.7 0.28 6.2E-06 44.9 4.8 108 4-119 2-119 (389)
212 TIGR02441 fa_ox_alpha_mit fatt 91.6 0.8 1.7E-05 45.9 8.2 29 4-33 336-364 (737)
213 cd01339 LDH-like_MDH L-lactate 91.6 0.43 9.4E-06 42.3 5.8 31 6-37 1-31 (300)
214 TIGR02440 FadJ fatty oxidation 91.5 1.1 2.4E-05 44.7 9.1 32 4-36 305-336 (699)
215 PRK06035 3-hydroxyacyl-CoA deh 91.3 0.32 7E-06 42.8 4.7 34 1-36 1-34 (291)
216 TIGR02992 ectoine_eutC ectoine 91.2 0.27 5.8E-06 44.3 4.1 34 4-37 130-163 (326)
217 PRK05442 malate dehydrogenase; 91.1 0.4 8.6E-06 43.2 5.1 26 3-28 4-30 (326)
218 PF02737 3HCDH_N: 3-hydroxyacy 91.1 0.34 7.3E-06 39.7 4.3 29 5-34 1-29 (180)
219 PRK08293 3-hydroxybutyryl-CoA 91.0 0.35 7.7E-06 42.5 4.7 32 1-33 1-32 (287)
220 PRK08291 ectoine utilization p 91.0 0.3 6.5E-06 44.0 4.3 34 4-37 133-166 (330)
221 PLN02166 dTDP-glucose 4,6-dehy 91.0 2.5 5.5E-05 39.6 10.6 31 3-34 120-151 (436)
222 cd00704 MDH Malate dehydrogena 91.0 0.5 1.1E-05 42.5 5.6 26 4-29 1-27 (323)
223 PRK00683 murD UDP-N-acetylmura 90.8 1.1 2.3E-05 41.7 7.9 85 1-119 1-85 (418)
224 PLN02353 probable UDP-glucose 90.8 0.35 7.6E-06 45.8 4.7 32 3-34 1-33 (473)
225 COG0373 HemA Glutamyl-tRNA red 90.7 0.84 1.8E-05 42.3 6.9 92 4-126 179-276 (414)
226 PRK11730 fadB multifunctional 90.6 1.5 3.3E-05 43.7 9.2 29 4-33 314-342 (715)
227 cd01075 NAD_bind_Leu_Phe_Val_D 90.5 0.51 1.1E-05 39.3 5.0 33 3-37 28-60 (200)
228 PF00070 Pyr_redox: Pyridine n 90.4 0.68 1.5E-05 32.2 4.8 30 5-35 1-30 (80)
229 PLN02545 3-hydroxybutyryl-CoA 90.2 0.46 1E-05 41.9 4.7 34 1-36 1-35 (295)
230 PRK11154 fadJ multifunctional 90.1 1.2 2.6E-05 44.5 8.0 29 4-32 310-338 (708)
231 PRK14806 bifunctional cyclohex 90.1 0.6 1.3E-05 46.6 5.9 32 4-36 4-36 (735)
232 cd00401 AdoHcyase S-adenosyl-L 90.1 0.72 1.6E-05 42.9 6.0 31 4-36 203-233 (413)
233 PF13241 NAD_binding_7: Putati 90.1 3.3 7.2E-05 30.4 8.6 33 3-36 7-39 (103)
234 PRK14106 murD UDP-N-acetylmura 90.0 1.6 3.4E-05 40.8 8.4 89 3-118 5-93 (450)
235 COG1063 Tdh Threonine dehydrog 90.0 0.56 1.2E-05 42.6 5.2 32 5-37 171-202 (350)
236 PRK14179 bifunctional 5,10-met 89.9 1.4 2.9E-05 38.9 7.3 26 4-30 159-185 (284)
237 PRK05476 S-adenosyl-L-homocyst 89.9 0.88 1.9E-05 42.5 6.4 32 3-36 212-243 (425)
238 COG0771 MurD UDP-N-acetylmuram 89.8 1.9 4.1E-05 40.5 8.5 89 3-119 7-95 (448)
239 PRK06487 glycerate dehydrogena 89.7 0.47 1E-05 42.5 4.4 29 4-33 149-177 (317)
240 TIGR01202 bchC 2-desacetyl-2-h 89.7 1.3 2.8E-05 39.2 7.2 31 5-36 147-177 (308)
241 cd00650 LDH_MDH_like NAD-depen 89.7 1.5 3.3E-05 38.0 7.5 32 6-37 1-35 (263)
242 PRK14620 NAD(P)H-dependent gly 89.7 0.81 1.7E-05 40.9 5.9 31 4-36 1-31 (326)
243 PRK11908 NAD-dependent epimera 89.6 0.54 1.2E-05 42.3 4.7 31 4-34 2-33 (347)
244 PF07991 IlvN: Acetohydroxy ac 89.5 0.46 1E-05 38.2 3.7 82 3-118 4-89 (165)
245 COG1086 Predicted nucleoside-d 89.5 0.84 1.8E-05 43.8 6.0 35 3-37 116-150 (588)
246 PLN02350 phosphogluconate dehy 89.5 0.41 8.9E-06 45.5 4.0 33 3-37 6-38 (493)
247 PRK06932 glycerate dehydrogena 89.5 0.51 1.1E-05 42.2 4.4 29 4-33 148-176 (314)
248 KOG2711 Glycerol-3-phosphate d 89.5 1.2 2.5E-05 40.1 6.5 24 2-25 20-43 (372)
249 PRK07530 3-hydroxybutyryl-CoA 89.5 0.57 1.2E-05 41.3 4.7 33 2-36 3-35 (292)
250 PRK06130 3-hydroxybutyryl-CoA 89.5 0.57 1.2E-05 41.6 4.7 32 1-33 1-33 (311)
251 PRK08410 2-hydroxyacid dehydro 89.5 0.51 1.1E-05 42.2 4.4 29 4-33 146-174 (311)
252 TIGR03736 PRTRC_ThiF PRTRC sys 89.4 0.98 2.1E-05 38.9 5.9 23 3-25 11-33 (244)
253 COG4529 Uncharacterized protei 89.3 0.49 1.1E-05 44.4 4.2 42 3-44 1-44 (474)
254 TIGR03376 glycerol3P_DH glycer 89.3 1.2 2.6E-05 40.4 6.7 21 5-25 1-21 (342)
255 cd01487 E1_ThiF_like E1_ThiF_l 89.3 0.55 1.2E-05 38.2 4.1 31 5-36 1-31 (174)
256 COG5322 Predicted dehydrogenas 89.1 2.2 4.7E-05 37.3 7.6 24 4-27 168-192 (351)
257 PRK07236 hypothetical protein; 89.0 0.56 1.2E-05 42.9 4.4 32 1-33 4-35 (386)
258 TIGR01035 hemA glutamyl-tRNA r 89.0 0.41 8.9E-06 44.6 3.6 32 4-36 181-212 (417)
259 cd01080 NAD_bind_m-THF_DH_Cycl 89.0 1.7 3.6E-05 35.3 6.7 27 3-30 44-71 (168)
260 PRK12320 hypothetical protein; 88.9 3.4 7.5E-05 41.1 10.0 31 4-35 1-32 (699)
261 PRK14031 glutamate dehydrogena 88.8 1.8 4E-05 40.6 7.6 33 3-36 228-260 (444)
262 TIGR00936 ahcY adenosylhomocys 88.8 1.3 2.8E-05 41.1 6.6 30 3-33 195-224 (406)
263 PRK15409 bifunctional glyoxyla 88.7 0.59 1.3E-05 42.0 4.2 28 4-32 146-174 (323)
264 COG0743 Dxr 1-deoxy-D-xylulose 88.6 0.7 1.5E-05 41.9 4.5 39 3-42 1-41 (385)
265 PRK14194 bifunctional 5,10-met 88.6 1.6 3.6E-05 38.7 6.9 29 4-33 160-189 (301)
266 PRK08219 short chain dehydroge 88.6 0.69 1.5E-05 38.4 4.4 33 1-35 1-34 (227)
267 TIGR01771 L-LDH-NAD L-lactate 88.5 1.3 2.8E-05 39.4 6.3 30 8-37 1-30 (299)
268 PLN02928 oxidoreductase family 88.5 0.66 1.4E-05 42.2 4.4 29 4-33 160-188 (347)
269 KOG0455 Homoserine dehydrogena 88.4 0.64 1.4E-05 40.1 3.9 104 1-118 1-113 (364)
270 PRK06129 3-hydroxyacyl-CoA deh 88.3 0.69 1.5E-05 41.1 4.4 32 3-36 2-33 (308)
271 TIGR03855 NAD_NadX aspartate d 88.2 0.59 1.3E-05 39.9 3.7 38 83-123 29-66 (229)
272 PRK12480 D-lactate dehydrogena 88.2 0.8 1.7E-05 41.3 4.7 29 4-33 147-175 (330)
273 PRK15057 UDP-glucose 6-dehydro 88.2 0.6 1.3E-05 43.1 4.0 29 4-34 1-29 (388)
274 PRK08644 thiamine biosynthesis 88.2 0.54 1.2E-05 39.6 3.4 33 3-36 28-60 (212)
275 PRK06436 glycerate dehydrogena 87.9 0.76 1.7E-05 40.9 4.4 31 3-34 122-152 (303)
276 PRK13243 glyoxylate reductase; 87.7 0.77 1.7E-05 41.4 4.4 31 4-36 151-181 (333)
277 PRK14030 glutamate dehydrogena 87.7 3.4 7.4E-05 38.8 8.6 105 3-123 228-341 (445)
278 PRK04690 murD UDP-N-acetylmura 87.6 2.9 6.2E-05 39.6 8.3 31 3-35 8-38 (468)
279 PRK06407 ornithine cyclodeamin 87.6 0.64 1.4E-05 41.4 3.7 88 4-118 118-206 (301)
280 PRK15181 Vi polysaccharide bio 87.5 0.86 1.9E-05 41.1 4.6 34 1-35 13-47 (348)
281 cd05313 NAD_bind_2_Glu_DH NAD( 87.1 1.3 2.8E-05 38.5 5.2 34 3-37 38-71 (254)
282 PRK15438 erythronate-4-phospha 87.1 0.89 1.9E-05 41.8 4.4 30 3-33 116-145 (378)
283 COG1252 Ndh NADH dehydrogenase 87.1 1.1 2.3E-05 41.6 4.9 36 1-36 1-37 (405)
284 PRK00045 hemA glutamyl-tRNA re 87.0 0.75 1.6E-05 42.9 4.0 33 4-37 183-215 (423)
285 PLN02858 fructose-bisphosphate 87.0 0.99 2.1E-05 48.3 5.2 32 3-36 324-355 (1378)
286 TIGR00873 gnd 6-phosphoglucona 86.9 0.89 1.9E-05 43.0 4.4 30 5-36 1-30 (467)
287 TIGR00518 alaDH alanine dehydr 86.7 1.9 4.1E-05 39.6 6.3 31 4-36 168-198 (370)
288 COG1052 LdhA Lactate dehydroge 86.5 0.95 2.1E-05 40.7 4.2 29 4-33 147-175 (324)
289 PLN02427 UDP-apiose/xylose syn 86.5 1.1 2.5E-05 40.8 4.8 32 3-34 14-46 (386)
290 PRK06199 ornithine cyclodeamin 86.5 1.6 3.5E-05 40.1 5.8 35 4-38 156-191 (379)
291 KOG3923 D-aspartate oxidase [A 86.2 0.94 2E-05 40.1 3.9 37 1-37 1-43 (342)
292 PRK09880 L-idonate 5-dehydroge 86.2 2.9 6.3E-05 37.4 7.2 29 4-33 171-200 (343)
293 PLN02858 fructose-bisphosphate 86.0 1 2.2E-05 48.2 4.7 33 3-37 4-36 (1378)
294 PRK05732 2-octaprenyl-6-methox 85.9 1.1 2.4E-05 40.8 4.4 34 1-34 1-36 (395)
295 PRK11790 D-3-phosphoglycerate 85.7 1.1 2.5E-05 41.6 4.5 29 4-33 152-180 (409)
296 PLN02477 glutamate dehydrogena 85.7 1.5 3.2E-05 40.8 5.1 34 3-37 206-239 (410)
297 PRK07066 3-hydroxybutyryl-CoA 85.5 1.4 3E-05 39.7 4.7 32 3-36 7-38 (321)
298 PLN02306 hydroxypyruvate reduc 85.4 1.3 2.8E-05 40.9 4.5 29 4-33 166-195 (386)
299 PF01073 3Beta_HSD: 3-beta hyd 85.3 4.3 9.3E-05 35.6 7.7 29 8-36 2-31 (280)
300 PLN02662 cinnamyl-alcohol dehy 85.1 2.4 5.2E-05 37.3 6.1 31 4-35 5-36 (322)
301 PRK00257 erythronate-4-phospha 85.0 1.3 2.8E-05 40.8 4.4 30 3-33 116-145 (381)
302 PTZ00079 NADP-specific glutama 84.9 7 0.00015 36.8 9.2 101 3-119 237-347 (454)
303 TIGR01777 yfcH conserved hypot 84.7 6.8 0.00015 33.7 8.7 30 6-36 1-31 (292)
304 COG2084 MmsB 3-hydroxyisobutyr 84.4 1.4 3E-05 39.0 4.1 31 4-36 1-31 (286)
305 PLN00125 Succinyl-CoA ligase [ 84.4 4.4 9.6E-05 36.1 7.3 86 4-123 13-99 (300)
306 PRK00258 aroE shikimate 5-dehy 84.4 3 6.5E-05 36.5 6.3 33 4-37 124-156 (278)
307 PRK04308 murD UDP-N-acetylmura 84.3 7 0.00015 36.5 9.1 91 3-123 5-95 (445)
308 PRK05865 hypothetical protein; 83.9 4.4 9.4E-05 41.3 7.9 31 4-35 1-32 (854)
309 PRK09260 3-hydroxybutyryl-CoA 83.8 1.5 3.3E-05 38.5 4.2 29 4-33 2-30 (288)
310 PRK00141 murD UDP-N-acetylmura 83.8 4.1 8.9E-05 38.6 7.3 32 3-36 15-46 (473)
311 PRK14189 bifunctional 5,10-met 83.6 6.3 0.00014 34.8 7.9 28 4-32 159-187 (285)
312 COG1250 FadB 3-hydroxyacyl-CoA 83.6 1.5 3.2E-05 39.2 4.0 32 1-33 1-32 (307)
313 TIGR01087 murD UDP-N-acetylmur 83.5 5.3 0.00011 37.1 7.9 30 5-36 1-30 (433)
314 PRK12549 shikimate 5-dehydroge 83.3 2.6 5.7E-05 37.1 5.5 33 4-37 128-160 (284)
315 PRK12825 fabG 3-ketoacyl-(acyl 83.3 2.2 4.7E-05 35.7 4.8 34 1-35 4-38 (249)
316 PRK04663 murD UDP-N-acetylmura 83.2 5.8 0.00012 37.1 8.0 84 4-118 8-93 (438)
317 PRK05653 fabG 3-ketoacyl-(acyl 83.0 2.3 5E-05 35.4 4.9 31 3-34 5-36 (246)
318 PRK05562 precorrin-2 dehydroge 83.0 15 0.00033 31.2 9.7 31 3-34 25-55 (223)
319 PRK14188 bifunctional 5,10-met 82.9 4.3 9.3E-05 36.1 6.6 29 4-33 159-188 (296)
320 PRK01710 murD UDP-N-acetylmura 82.8 7.3 0.00016 36.6 8.6 31 4-36 15-45 (458)
321 PRK09310 aroDE bifunctional 3- 82.7 3 6.6E-05 39.6 6.0 32 3-36 332-363 (477)
322 PRK03369 murD UDP-N-acetylmura 82.2 5.7 0.00012 37.8 7.7 82 4-118 13-95 (488)
323 PRK00421 murC UDP-N-acetylmura 82.1 5.1 0.00011 37.7 7.3 84 3-118 7-91 (461)
324 KOG1399 Flavin-containing mono 82.1 1.5 3.3E-05 41.2 3.7 29 2-31 5-33 (448)
325 PF02423 OCD_Mu_crystall: Orni 82.1 0.58 1.3E-05 41.9 0.9 87 4-118 129-218 (313)
326 COG0334 GdhA Glutamate dehydro 82.0 8.6 0.00019 35.6 8.3 35 3-38 207-241 (411)
327 PLN02986 cinnamyl-alcohol dehy 82.0 4.2 9E-05 35.9 6.3 32 4-36 6-38 (322)
328 PLN00141 Tic62-NAD(P)-related 81.9 2.6 5.7E-05 35.9 4.9 32 3-35 17-49 (251)
329 PRK09424 pntA NAD(P) transhydr 81.9 6.6 0.00014 37.6 7.9 33 3-37 165-197 (509)
330 PRK11259 solA N-methyltryptoph 81.8 2.1 4.4E-05 38.7 4.4 32 1-33 1-32 (376)
331 PRK06823 ornithine cyclodeamin 81.7 2.3 5E-05 38.1 4.6 35 4-38 129-163 (315)
332 TIGR01758 MDH_euk_cyt malate d 81.7 3.3 7.1E-05 37.3 5.5 22 5-26 1-23 (324)
333 COG0644 FixC Dehydrogenases (f 81.5 2.1 4.6E-05 39.4 4.4 33 1-34 1-33 (396)
334 TIGR01327 PGDH D-3-phosphoglyc 81.4 2.1 4.6E-05 41.1 4.5 29 4-33 139-167 (525)
335 PRK05597 molybdopterin biosynt 81.3 2.9 6.3E-05 38.1 5.1 33 3-36 28-60 (355)
336 PRK09754 phenylpropionate diox 81.2 2 4.2E-05 39.5 4.1 35 1-35 1-36 (396)
337 TIGR03219 salicylate_mono sali 81.2 2.1 4.5E-05 39.5 4.2 28 4-31 1-28 (414)
338 PRK04965 NADH:flavorubredoxin 81.0 2.3 4.9E-05 38.8 4.4 35 2-36 1-36 (377)
339 PTZ00142 6-phosphogluconate de 80.9 2.1 4.5E-05 40.6 4.1 32 4-37 2-33 (470)
340 KOG1494 NAD-dependent malate d 80.7 1.4 3E-05 38.7 2.6 35 3-37 28-63 (345)
341 PLN00198 anthocyanidin reducta 80.7 2.7 5.9E-05 37.5 4.7 33 1-34 7-40 (338)
342 PRK13512 coenzyme A disulfide 80.7 2.1 4.5E-05 40.0 4.1 34 3-36 1-35 (438)
343 PRK15076 alpha-galactosidase; 80.7 1.4 3.1E-05 41.2 3.0 34 4-37 2-39 (431)
344 KOG2733 Uncharacterized membra 80.5 1.6 3.5E-05 39.6 3.0 108 4-126 6-118 (423)
345 TIGR01692 HIBADH 3-hydroxyisob 80.5 1.9 4.1E-05 37.9 3.6 27 8-36 1-27 (288)
346 PRK13581 D-3-phosphoglycerate 80.5 2.3 5E-05 40.9 4.4 30 4-34 141-170 (526)
347 cd08230 glucose_DH Glucose deh 80.5 11 0.00023 33.9 8.5 31 4-35 174-204 (355)
348 PRK14175 bifunctional 5,10-met 80.4 7.2 0.00016 34.5 7.1 30 4-34 159-189 (286)
349 PLN02240 UDP-glucose 4-epimera 80.4 2.8 6E-05 37.5 4.7 32 2-34 4-36 (352)
350 PRK12409 D-amino acid dehydrog 80.3 2.5 5.3E-05 38.9 4.4 29 4-33 2-30 (410)
351 cd01336 MDH_cytoplasmic_cytoso 79.9 3 6.5E-05 37.5 4.7 24 3-26 2-26 (325)
352 PF10100 DUF2338: Uncharacteri 79.8 4.2 9.1E-05 37.5 5.5 161 3-174 1-196 (429)
353 PRK09126 hypothetical protein; 79.7 2.5 5.4E-05 38.5 4.2 32 1-33 1-32 (392)
354 PRK13940 glutamyl-tRNA reducta 79.6 2.3 5E-05 39.6 3.9 33 4-37 182-214 (414)
355 PLN02695 GDP-D-mannose-3',5'-e 79.5 3.1 6.7E-05 37.9 4.7 32 3-35 21-53 (370)
356 PRK05600 thiamine biosynthesis 79.5 1.6 3.5E-05 40.0 2.8 33 3-36 41-73 (370)
357 COG2423 Predicted ornithine cy 79.4 3.5 7.5E-05 37.2 4.9 88 4-118 131-219 (330)
358 KOG0409 Predicted dehydrogenas 79.3 2.3 5E-05 37.7 3.6 32 3-36 35-66 (327)
359 TIGR00715 precor6x_red precorr 79.1 3.1 6.8E-05 36.1 4.4 30 4-35 1-31 (256)
360 PRK14989 nitrite reductase sub 78.9 2.9 6.4E-05 42.6 4.7 36 1-36 1-39 (847)
361 PRK08163 salicylate hydroxylas 78.9 3 6.4E-05 38.0 4.4 28 3-31 4-31 (396)
362 PTZ00187 succinyl-CoA syntheta 78.6 8.8 0.00019 34.4 7.1 88 4-123 30-118 (317)
363 PRK08223 hypothetical protein; 78.2 3.8 8.2E-05 36.2 4.6 33 3-36 27-59 (287)
364 PRK05335 tRNA (uracil-5-)-meth 78.1 3 6.5E-05 39.0 4.2 30 3-33 2-31 (436)
365 COG1832 Predicted CoA-binding 78.0 15 0.00033 28.7 7.4 38 83-123 66-103 (140)
366 cd05191 NAD_bind_amino_acid_DH 77.9 5.5 0.00012 28.1 4.7 33 3-36 23-55 (86)
367 PLN02586 probable cinnamyl alc 77.7 11 0.00025 34.0 7.9 30 5-35 186-215 (360)
368 COG1064 AdhP Zn-dependent alco 77.7 14 0.00031 33.4 8.3 33 4-37 168-200 (339)
369 PRK08125 bifunctional UDP-gluc 77.6 3.6 7.9E-05 40.6 4.9 33 3-35 315-348 (660)
370 PRK11445 putative oxidoreducta 77.6 3 6.6E-05 37.6 4.0 30 3-34 1-30 (351)
371 PTZ00318 NADH dehydrogenase-li 77.5 4.1 8.9E-05 37.9 5.0 34 1-35 8-41 (424)
372 TIGR00507 aroE shikimate 5-deh 77.2 7.3 0.00016 33.8 6.2 31 4-36 118-148 (270)
373 COG0579 Predicted dehydrogenas 77.2 3.7 8E-05 38.4 4.5 33 1-33 1-34 (429)
374 cd01483 E1_enzyme_family Super 77.1 3.8 8.2E-05 31.8 4.0 31 5-36 1-31 (143)
375 PF00899 ThiF: ThiF family; I 77.1 3 6.6E-05 32.0 3.4 33 3-36 2-34 (135)
376 PRK08849 2-octaprenyl-3-methyl 77.1 3.5 7.6E-05 37.6 4.4 32 1-33 1-32 (384)
377 PRK08013 oxidoreductase; Provi 77.0 3.5 7.7E-05 37.8 4.4 32 1-33 1-32 (400)
378 COG0665 DadA Glycine/D-amino a 77.0 4 8.8E-05 36.9 4.7 32 2-34 3-34 (387)
379 PRK07326 short chain dehydroge 76.9 4.4 9.5E-05 33.8 4.6 30 4-34 7-37 (237)
380 KOG2380 Prephenate dehydrogena 76.9 2.6 5.6E-05 38.1 3.2 25 3-27 52-76 (480)
381 PF02254 TrkA_N: TrkA-N domain 76.9 4.3 9.4E-05 30.0 4.1 30 6-36 1-30 (116)
382 PRK02006 murD UDP-N-acetylmura 76.8 11 0.00023 36.0 7.6 32 3-36 7-38 (498)
383 PRK07877 hypothetical protein; 76.6 2.1 4.5E-05 42.7 2.9 106 3-119 107-223 (722)
384 cd08237 ribitol-5-phosphate_DH 76.4 10 0.00022 33.9 7.1 30 5-34 166-196 (341)
385 TIGR02354 thiF_fam2 thiamine b 76.3 3.8 8.2E-05 34.1 4.0 33 3-36 21-53 (200)
386 cd05212 NAD_bind_m-THF_DH_Cycl 76.2 15 0.00033 28.7 7.2 28 3-31 28-56 (140)
387 PRK02472 murD UDP-N-acetylmura 76.1 15 0.00032 34.3 8.3 29 4-33 6-34 (447)
388 PRK14573 bifunctional D-alanyl 76.0 9.6 0.00021 38.7 7.5 34 1-36 1-36 (809)
389 KOG0069 Glyoxylate/hydroxypyru 75.8 2.3 5.1E-05 38.3 2.7 22 4-25 163-184 (336)
390 PRK09897 hypothetical protein; 75.7 3.7 8.1E-05 39.6 4.3 33 3-36 1-34 (534)
391 COG1023 Gnd Predicted 6-phosph 75.7 3.1 6.8E-05 35.8 3.2 28 4-32 1-28 (300)
392 PF01262 AlaDh_PNT_C: Alanine 75.6 5.3 0.00011 32.1 4.5 31 3-34 20-50 (168)
393 PRK03806 murD UDP-N-acetylmura 75.6 17 0.00037 33.8 8.6 30 4-35 7-36 (438)
394 COG0702 Predicted nucleoside-d 75.5 4.3 9.4E-05 34.5 4.3 32 4-36 1-33 (275)
395 PRK06184 hypothetical protein; 75.4 4 8.6E-05 38.8 4.3 32 1-33 1-32 (502)
396 PLN02172 flavin-containing mon 75.1 4.1 8.9E-05 38.5 4.3 30 3-33 10-39 (461)
397 PF01370 Epimerase: NAD depend 75.1 5.4 0.00012 33.1 4.7 30 6-36 1-31 (236)
398 PRK03659 glutathione-regulated 75.0 7.8 0.00017 37.9 6.3 30 4-34 401-430 (601)
399 PRK06847 hypothetical protein; 74.9 4.4 9.4E-05 36.6 4.4 32 1-33 1-33 (375)
400 TIGR03025 EPS_sugtrans exopoly 74.8 6.5 0.00014 36.8 5.6 33 4-36 126-160 (445)
401 PRK01368 murD UDP-N-acetylmura 74.8 13 0.00028 35.0 7.6 30 4-36 7-36 (454)
402 PRK08850 2-octaprenyl-6-methox 74.6 4.3 9.2E-05 37.3 4.3 32 1-33 2-33 (405)
403 PRK14190 bifunctional 5,10-met 74.5 17 0.00037 32.1 7.7 22 4-25 159-181 (284)
404 KOG0024 Sorbitol dehydrogenase 74.5 9 0.00019 34.4 5.9 31 92-123 241-271 (354)
405 COG0169 AroE Shikimate 5-dehyd 74.2 8.6 0.00019 33.9 5.8 32 4-35 127-158 (283)
406 PRK14982 acyl-ACP reductase; P 74.1 5.4 0.00012 36.2 4.6 31 3-33 155-187 (340)
407 COG0654 UbiH 2-polyprenyl-6-me 74.1 4.4 9.5E-05 37.1 4.2 30 3-33 2-31 (387)
408 PRK11728 hydroxyglutarate oxid 73.9 5 0.00011 36.7 4.5 31 3-33 2-33 (393)
409 PF02882 THF_DHG_CYH_C: Tetrah 73.9 27 0.00058 28.1 8.1 28 3-31 36-64 (160)
410 TIGR03466 HpnA hopanoid-associ 73.9 4.8 0.0001 35.3 4.3 31 4-35 1-32 (328)
411 COG3268 Uncharacterized conser 73.8 3.3 7.2E-05 37.3 3.1 96 4-126 7-106 (382)
412 PRK10217 dTDP-glucose 4,6-dehy 73.7 4.7 0.0001 36.1 4.3 32 4-36 2-34 (355)
413 PF00208 ELFV_dehydrog: Glutam 73.7 7.3 0.00016 33.5 5.2 34 3-37 32-65 (244)
414 PRK08063 enoyl-(acyl carrier p 73.7 6.4 0.00014 33.1 4.9 35 1-36 2-37 (250)
415 PRK09987 dTDP-4-dehydrorhamnos 73.6 4.6 9.9E-05 35.5 4.0 28 4-33 1-29 (299)
416 PF00743 FMO-like: Flavin-bind 73.6 4.6 9.9E-05 38.9 4.3 30 3-33 1-30 (531)
417 TIGR03023 WcaJ_sugtrans Undeca 73.6 6.3 0.00014 36.9 5.2 33 4-36 129-163 (451)
418 PRK06617 2-octaprenyl-6-methox 73.3 4.9 0.00011 36.5 4.3 30 3-33 1-30 (374)
419 TIGR01809 Shik-DH-AROM shikima 73.2 7.1 0.00015 34.3 5.1 33 4-37 126-158 (282)
420 KOG0029 Amine oxidase [Seconda 73.2 5.1 0.00011 38.3 4.5 33 2-35 14-46 (501)
421 PRK03803 murD UDP-N-acetylmura 73.1 17 0.00036 34.0 7.9 30 5-36 8-37 (448)
422 COG2907 Predicted NAD/FAD-bind 73.1 3.3 7.2E-05 37.6 2.9 28 3-30 8-35 (447)
423 PLN02896 cinnamyl-alcohol dehy 73.1 6.4 0.00014 35.4 4.9 32 3-35 10-42 (353)
424 PLN02778 3,5-epimerase/4-reduc 73.0 4.2 9E-05 35.9 3.6 28 3-31 9-37 (298)
425 PRK05868 hypothetical protein; 72.8 4.9 0.00011 36.6 4.2 30 3-33 1-30 (372)
426 PRK14191 bifunctional 5,10-met 72.7 22 0.00048 31.4 8.0 26 4-30 158-184 (285)
427 PRK10675 UDP-galactose-4-epime 72.6 5.4 0.00012 35.4 4.3 30 4-34 1-31 (338)
428 TIGR03022 WbaP_sugtrans Undeca 72.5 8 0.00017 36.3 5.6 34 3-36 125-160 (456)
429 PRK07333 2-octaprenyl-6-methox 72.5 5.3 0.00012 36.4 4.3 31 3-33 1-32 (403)
430 PRK09496 trkA potassium transp 72.4 5 0.00011 37.4 4.2 30 4-34 1-30 (453)
431 PRK07494 2-octaprenyl-6-methox 72.4 5.4 0.00012 36.2 4.4 30 3-33 7-36 (388)
432 PTZ00075 Adenosylhomocysteinas 72.3 5.7 0.00012 37.6 4.5 30 3-33 254-283 (476)
433 PTZ00188 adrenodoxin reductase 72.2 5.9 0.00013 37.8 4.6 28 3-30 39-66 (506)
434 PRK12826 3-ketoacyl-(acyl-carr 72.2 6.8 0.00015 32.8 4.7 32 3-35 6-38 (251)
435 PRK07023 short chain dehydroge 72.1 6.6 0.00014 33.0 4.5 30 4-34 2-32 (243)
436 KOG1430 C-3 sterol dehydrogena 72.0 6.9 0.00015 35.7 4.8 35 2-36 3-38 (361)
437 PRK07208 hypothetical protein; 71.8 5.2 0.00011 37.6 4.2 32 1-33 2-33 (479)
438 PF07992 Pyr_redox_2: Pyridine 71.8 5.8 0.00013 32.1 4.0 28 5-33 1-28 (201)
439 PLN02214 cinnamoyl-CoA reducta 71.8 7.1 0.00015 35.0 4.9 32 3-35 10-42 (342)
440 TIGR03589 PseB UDP-N-acetylglu 71.8 6.5 0.00014 35.0 4.6 33 2-34 3-37 (324)
441 PRK12827 short chain dehydroge 71.7 6.9 0.00015 32.7 4.6 31 3-34 6-37 (249)
442 PRK07589 ornithine cyclodeamin 71.5 5.2 0.00011 36.3 3.9 34 4-37 130-163 (346)
443 COG1232 HemY Protoporphyrinoge 71.4 5 0.00011 37.7 3.9 31 4-34 1-32 (444)
444 cd00757 ThiF_MoeB_HesA_family 71.4 6 0.00013 33.5 4.1 33 3-36 21-53 (228)
445 PLN02206 UDP-glucuronate decar 71.4 5.7 0.00012 37.3 4.3 31 3-34 119-150 (442)
446 COG1004 Ugd Predicted UDP-gluc 71.2 5.4 0.00012 36.8 3.9 29 4-33 1-29 (414)
447 TIGR01181 dTDP_gluc_dehyt dTDP 71.0 5.1 0.00011 34.9 3.7 30 5-34 1-32 (317)
448 TIGR00561 pntA NAD(P) transhyd 70.9 12 0.00026 35.9 6.3 31 4-36 165-195 (511)
449 PLN02852 ferredoxin-NADP+ redu 70.7 6.4 0.00014 37.6 4.5 32 3-34 26-58 (491)
450 PRK14170 bifunctional 5,10-met 70.7 23 0.0005 31.2 7.6 22 4-25 158-180 (284)
451 TIGR03366 HpnZ_proposed putati 70.3 11 0.00024 32.6 5.7 29 4-33 122-151 (280)
452 PRK06182 short chain dehydroge 70.2 8.9 0.00019 32.9 5.0 34 1-35 1-35 (273)
453 PRK06914 short chain dehydroge 70.1 9.1 0.0002 32.9 5.1 35 1-36 1-36 (280)
454 PLN02572 UDP-sulfoquinovose sy 70.1 6.7 0.00015 36.8 4.5 31 3-34 47-78 (442)
455 PLN02260 probable rhamnose bio 69.7 6.5 0.00014 38.8 4.5 32 3-34 6-39 (668)
456 PRK08773 2-octaprenyl-3-methyl 69.4 7.1 0.00015 35.6 4.4 30 3-33 6-35 (392)
457 PF01494 FAD_binding_3: FAD bi 69.4 6.9 0.00015 34.4 4.3 29 4-33 2-30 (356)
458 PRK07045 putative monooxygenas 69.3 6.9 0.00015 35.6 4.3 31 2-33 4-34 (388)
459 PRK06753 hypothetical protein; 69.3 6.8 0.00015 35.3 4.2 27 4-31 1-27 (373)
460 PRK06180 short chain dehydroge 69.2 9 0.0002 33.0 4.9 32 3-35 4-36 (277)
461 PRK11150 rfaD ADP-L-glycero-D- 69.1 7 0.00015 34.2 4.2 30 6-36 2-32 (308)
462 PRK14192 bifunctional 5,10-met 69.1 21 0.00045 31.5 7.1 27 4-31 160-187 (283)
463 COG0451 WcaG Nucleoside-diphos 69.0 7.3 0.00016 33.8 4.3 31 5-36 2-33 (314)
464 PRK09564 coenzyme A disulfide 68.6 6.4 0.00014 36.6 4.0 32 4-35 1-33 (444)
465 PRK00711 D-amino acid dehydrog 68.5 7.5 0.00016 35.6 4.4 29 4-33 1-29 (416)
466 TIGR01214 rmlD dTDP-4-dehydror 68.5 6.6 0.00014 33.8 3.9 30 5-35 1-31 (287)
467 PRK07588 hypothetical protein; 68.3 6.7 0.00015 35.7 4.0 29 4-33 1-29 (391)
468 PRK05257 malate:quinone oxidor 68.3 6.9 0.00015 37.3 4.2 31 3-33 5-36 (494)
469 PRK14172 bifunctional 5,10-met 68.2 30 0.00066 30.4 7.8 22 4-25 159-181 (278)
470 TIGR02622 CDP_4_6_dhtase CDP-g 68.0 9.2 0.0002 34.3 4.8 32 2-34 3-35 (349)
471 PRK05565 fabG 3-ketoacyl-(acyl 68.0 9.4 0.0002 31.8 4.6 33 3-36 5-38 (247)
472 PLN02686 cinnamoyl-CoA reducta 67.7 9.4 0.0002 34.7 4.8 35 1-36 51-86 (367)
473 PRK02318 mannitol-1-phosphate 67.5 6.5 0.00014 36.1 3.7 32 4-35 1-32 (381)
474 PRK02705 murD UDP-N-acetylmura 67.5 22 0.00047 33.3 7.3 30 5-36 2-31 (459)
475 PLN02514 cinnamyl-alcohol dehy 67.4 22 0.00048 32.0 7.2 32 4-36 182-213 (357)
476 cd05297 GH4_alpha_glucosidase_ 67.4 11 0.00025 35.1 5.4 17 4-20 1-17 (423)
477 PRK12829 short chain dehydroge 67.3 9.7 0.00021 32.2 4.6 33 2-35 10-43 (264)
478 PRK10084 dTDP-glucose 4,6 dehy 67.1 7.9 0.00017 34.6 4.2 24 4-27 1-25 (352)
479 COG1648 CysG Siroheme synthase 67.1 27 0.00058 29.4 7.1 33 3-36 12-44 (210)
480 PRK14187 bifunctional 5,10-met 67.0 33 0.00071 30.5 7.8 22 4-25 161-183 (294)
481 PRK05557 fabG 3-ketoacyl-(acyl 67.0 11 0.00025 31.2 4.9 33 3-36 5-38 (248)
482 PRK13394 3-hydroxybutyrate deh 66.9 11 0.00023 31.9 4.8 31 3-34 7-38 (262)
483 PRK07231 fabG 3-ketoacyl-(acyl 66.7 11 0.00025 31.4 4.9 31 4-35 6-37 (251)
484 COG1810 Uncharacterized protei 66.1 41 0.00089 28.5 7.8 127 3-173 1-136 (224)
485 PRK14182 bifunctional 5,10-met 66.0 28 0.00062 30.7 7.2 28 92-123 199-226 (282)
486 COG0059 IlvC Ketol-acid reduct 66.0 14 0.00031 32.9 5.3 82 3-118 18-103 (338)
487 PLN02494 adenosylhomocysteinas 66.0 9.1 0.0002 36.3 4.4 29 4-33 255-283 (477)
488 PRK07340 ornithine cyclodeamin 65.7 9.4 0.0002 33.9 4.3 34 4-37 126-159 (304)
489 PRK07577 short chain dehydroge 65.4 13 0.00028 30.8 4.9 34 1-35 1-35 (234)
490 PRK06019 phosphoribosylaminoim 65.4 12 0.00026 34.1 5.1 32 3-35 2-33 (372)
491 TIGR03570 NeuD_NnaD sugar O-ac 65.3 11 0.00024 30.5 4.4 32 5-37 1-32 (201)
492 cd08281 liver_ADH_like1 Zinc-d 65.0 28 0.0006 31.5 7.4 28 5-33 194-222 (371)
493 PRK10538 malonic semialdehyde 64.9 12 0.00026 31.5 4.7 31 4-35 1-32 (248)
494 PRK08243 4-hydroxybenzoate 3-m 64.8 9.4 0.0002 34.9 4.3 30 3-33 2-31 (392)
495 PRK12416 protoporphyrinogen ox 64.8 9.2 0.0002 35.8 4.3 31 3-33 1-36 (463)
496 PRK11883 protoporphyrinogen ox 64.6 8.8 0.00019 35.5 4.1 28 4-31 1-29 (451)
497 PRK14851 hypothetical protein; 64.2 8.5 0.00018 38.3 4.0 32 3-35 43-74 (679)
498 PRK09291 short chain dehydroge 64.2 14 0.00029 31.2 4.9 32 3-35 2-34 (257)
499 PRK14174 bifunctional 5,10-met 64.2 34 0.00074 30.4 7.4 28 92-123 205-232 (295)
500 PRK06475 salicylate hydroxylas 64.0 9.5 0.00021 35.0 4.1 27 4-31 3-29 (400)
No 1
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-58 Score=408.39 Aligned_cols=261 Identities=68% Similarity=1.073 Sum_probs=243.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|||+|||.++|++.+++++|+++|+|+..+.+.++|||+|||+||+|+ +++..+++ .|.++|+.++++++.
T Consensus 2 ~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 2 VVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFEK 79 (337)
T ss_pred ceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeCC
Confidence 4899999999999999999888889999999997778899999999999999998 77766655 799999999999999
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~ 161 (265)
||++++|+..++|+||||||.+.++++++.++++|+++|++|++.+ ++|++|||+|++.+++..++||||+|+++|++|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 9999999999999999999999999999999999999888888744 479999999999997656799999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeeccccccccCCCC--CCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~--~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+|+||+++|||+++.+|++|++|..|..+|+++ +.+++++|++++|++|+.+|.++++.+++|++.++++.+++|||+
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt 239 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV 239 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence 999999999999999999999999988888865 467899999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++||+.+++++++++++.||++++|+
T Consensus 240 ~~~s~~dltv~l~k~vt~eev~~al~ 265 (337)
T PTZ00023 240 PDVSVVDLTCKLAKPAKYEEIVAAVK 265 (337)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 2
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.1e-58 Score=408.02 Aligned_cols=263 Identities=92% Similarity=1.388 Sum_probs=247.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|+|++|+.++|.+.++|++++++|+|+..+.+.++|||+|||+||+|++..+..++|+.|.++|+.+.++...
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~ 84 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIR 84 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcC
Confidence 58999999999999999999989999999999987788999999999999999982266665676899999999999888
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL 162 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~ 162 (265)
||++++|...++|+||||||.+.++++++.++++|+|++++|++++|.|++|||+|++.+++..++||||+|++++++++
T Consensus 85 ~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~ 164 (338)
T PLN02358 85 NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPL 164 (338)
T ss_pred CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHH
Confidence 89999998889999999999999999999999999999999998878899999999999976568999999999999999
Q ss_pred HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCce
Q 024565 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242 (265)
Q Consensus 163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G 242 (265)
|+||+++|||+++.+|++|++|+.|..+|++++++++++|++++|++|+.+|.++++.+++|++.++++.+++|||+++|
T Consensus 165 lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~g 244 (338)
T PLN02358 165 AKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 244 (338)
T ss_pred HHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCe
Confidence 99999999999999999999999999999876789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCCCHHHHHHHhC
Q 024565 243 SVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 243 ~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+.+++++++++++.||++++|+
T Consensus 245 s~~dl~v~~~~~~t~eev~~~l~ 267 (338)
T PLN02358 245 SVVDLTVRLEKAATYDEIKKAIK 267 (338)
T ss_pred eEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999874
No 3
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.6e-58 Score=406.03 Aligned_cols=259 Identities=64% Similarity=1.031 Sum_probs=242.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|||+|||.++|++.+++++|+++|+|. .+.+.++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence 4899999999999999999888889999999995 47889999999999999998 77766655 799999999998878
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~ 161 (265)
+|++++|.+.++|+||||||.+.+++.++.++++|+|+|++|++.+ +.|++|||+|.+.+++ .++||||+|+++|+++
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 9999999877999999999999999999999999999888998854 4699999999999975 6899999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCc
Q 024565 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241 (265)
Q Consensus 162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~ 241 (265)
+|+||+++|||+++.+|++|++|+.|..+|++++++++++|++++|++|+.+|.++++++++|++.|+++.+++|||+++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999987667999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecCCCCHHHHHHHhC
Q 024565 242 VSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 242 G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
||+.+++++++++++.||++++|+
T Consensus 238 gs~~dltv~l~~~~t~eev~~al~ 261 (331)
T PRK15425 238 VSVVDLTVRLEKAATYEQIKAAVK 261 (331)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999874
No 4
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.2e-57 Score=409.32 Aligned_cols=262 Identities=76% Similarity=1.163 Sum_probs=244.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
|+||||+|||+||+.++|.+...+++++++|+++..+.++++|||+||++||+|+ +.+...+++.|.++|+.+.++...
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecC
Confidence 4799999999999999999887778999999998778899999999999999998 777652344799999999998878
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPL 162 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~ 162 (265)
+|++++|++.++|+||||||.+.+++.++.++++|+|++||+++++|.|++|||+|++.++...++||||+|++++++++
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 99999998779999999999999999999999999999999888778899999999999986568999999999999999
Q ss_pred HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCce
Q 024565 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242 (265)
Q Consensus 163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G 242 (265)
|+||+++|||+++.+|++|++|++++++|++++++++++|++++|++|+.+|.++++.+++|++.|+++.+++|||+++|
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~g 323 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 323 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCce
Confidence 99999999999999999999999999999886779999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCCCHHHHHHHhC
Q 024565 243 SVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 243 ~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+.+++++|+++++.||++++|+
T Consensus 324 s~~dltv~lek~~s~eev~~alk 346 (421)
T PLN02272 324 SVVDLTCRLEKSASYEDVKAAIK 346 (421)
T ss_pred EEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999874
No 5
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-57 Score=402.24 Aligned_cols=264 Identities=59% Similarity=0.952 Sum_probs=244.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC----CCeEEEEEeccccChhhhhhheeecccCCcccccceeee-------CCceE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL 69 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~----p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l 69 (265)
||++||||+|||+|||.++|++.+. +++|+++|+++..+.+.++|||+|||+||+|+ +.+... .++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence 7779999999999999999998864 68999999997778899999999999999998 666541 33479
Q ss_pred EECCEEEEEE-ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CC
Q 024565 70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-EL 146 (265)
Q Consensus 70 ~~~g~~~~~~-~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~ 146 (265)
.++|+.+.++ ++.||++++|.+.++|+|++|||.+.+++.+..++++|+|+|+||++.++ .+++|||+|++.+++ ..
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 77899999999999999999999999999999999999999999999665 578999999999986 36
Q ss_pred CeEEcCCCchhhhHhHHHHH-HHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccC
Q 024565 147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPA 225 (265)
Q Consensus 147 ~~Va~p~C~~ta~~~~L~pL-~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e 225 (265)
++|||.+|+++|++|.++.| +++|||+++.+|++|++++.|+++|++++.+|+.+|..+.|++|..+|.++.+.+++|+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 79999999999999999999 79999999999999999999999999866899999999999999999999999999999
Q ss_pred CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 226 LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 226 ~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+|+++.+++|||+..|++.+++++++++++.|||+++|+
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k 279 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIK 279 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-56 Score=397.06 Aligned_cols=259 Identities=49% Similarity=0.825 Sum_probs=240.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+||||+|||+|||.++|++.++ +++|+++|++.. +.+.++|||+|||+||+|+ +.+..+++ .|.++|+.+.++.
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~-~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~ 77 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTS-DPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS 77 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCC-CHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence 48999999999999999998766 579999999964 7889999999999999998 77665544 7999999999998
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccC-CCCeEEcCCCchh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKP-ELNIVSNASCTTN 157 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~-~~~~Va~p~C~~t 157 (265)
+.||++++|...++|+||||||.+.+++.++.++++|+|+|++|++.. |.|++|||+|.+.+++ ..++||||+|+++
T Consensus 78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence 789999999878999999999999999999999999999898998843 4699999999999974 3579999999999
Q ss_pred hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v 237 (265)
|++|+|+||+++|||+++.+|++|++|++|+++|++ +.+++++|..++|++|+.+|.++++.+++|+++|+++.+++||
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~-~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV 236 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDAS-HRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV 236 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCccccccc-ccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence 999999999999999999999999999999999987 5799999999999999999999999999999999999999999
Q ss_pred eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+..||+++++++++++++.|||+++|+
T Consensus 237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~ 264 (337)
T PRK07403 237 PTPNVSVVDLVVQVEKRTITEQVNEVLK 264 (337)
T ss_pred ccCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999874
No 7
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.6e-56 Score=399.74 Aligned_cols=260 Identities=50% Similarity=0.809 Sum_probs=242.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
++||||+|||++|+.++|+|.++ |.+++++|++.. +.+.++|||+|||+||.|+ +++..+.|+.|.++|+.+.++.
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC-CHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence 47999999999999999999876 789999999865 7889999999999999998 7776656668999999999998
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-CCceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~ 159 (265)
+.||++++|...++|+||||||.+.+++.++.++++|+|+|++|++.+ ++|++|||+|++.+++..++||||+|+++|+
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 889999999888999999999999999999999999999999998843 4799999999999976568999999999999
Q ss_pred HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+|+++||+++|||+++.+|++|++|+.|+.+|++ +.+++++|+.++|++|+.+|.++++.+++|+|.|+++.+++|||+
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~-~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv 296 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 296 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccccccCC-CCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccc
Confidence 9999999999999999999999999999999986 468899999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++||..+++++++++++.||++++|+
T Consensus 297 ~~gs~~dltv~~~~~~t~eev~~al~ 322 (395)
T PLN03096 297 PNVSVVDLVVQVEKKTFAEEVNAAFR 322 (395)
T ss_pred cceEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 8
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=7.5e-56 Score=391.98 Aligned_cols=258 Identities=60% Similarity=0.970 Sum_probs=238.7
Q ss_pred EEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCE-EEEEEec
Q 024565 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~ 81 (265)
||||+|||+|||.++|++.++ +++++++|+|. .+.+.++|||+|||+||+|+ +.+..++++.|.++|+ .+.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998877 57999999997 58899999999999999998 7776555425999999 9999887
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhhH
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCLA 160 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~ 160 (265)
.+|++++|++.++|+||||||.+.+++.++.++++|+|+|++|+++.| +|++|||+|++.++...++||||+|++++++
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 899999998779999999999999999999999999998989988655 7999999999999865679999999999999
Q ss_pred hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240 (265)
Q Consensus 161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~ 240 (265)
++|+||+++|||+++.+|++|++|+++..+|+++ .+++++|+.++|++|+.+|+++++.+++|+++++++.+++|||++
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999864 678999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 241 DVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 241 ~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+||+.+++++++++++.||++++|+
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~ 262 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALK 262 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 9
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-55 Score=391.15 Aligned_cols=258 Identities=41% Similarity=0.746 Sum_probs=239.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|+|+||+.++|.+.+++++++++++++..+.++++||++|||+||+|+ +.+. ..|+.+.++|+.+.+++..
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~-~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVT-AEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEE-EcCCEEEECCEEEEEEecC
Confidence 4899999999999999999999999999999997778899999999999999998 7665 4455899999999998777
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccC-CCCeEEcCCCchhhh
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKP-ELNIVSNASCTTNCL 159 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~ 159 (265)
++++++|+ ++|+||||||.+.++++++.++++|+++|++|+++. |.|++|||+|++.+++ ..++||||+|+++++
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999995 899999999999999999999999999888988843 4699999999999986 267999999999999
Q ss_pred HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+++|+||+++|||+++.+|++|++|.++..+|++. .+++++|+.++|++|+.+|.++++.+++|++.|+++.+++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999874 67899999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++||+.+++++|+++++.||++++|+
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~ 262 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLK 262 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 10
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.5e-55 Score=387.08 Aligned_cols=259 Identities=49% Similarity=0.844 Sum_probs=239.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|||+|||.++|++.+++++|+++|++.. +.+.++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcC
Confidence 48999999999999999998888899999999864 7889999999999999998 77665554 799999999999888
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccC-CCCeEEcCCCchhhhH
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKP-ELNIVSNASCTTNCLA 160 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~-~~~~Va~p~C~~ta~~ 160 (265)
||++++|...++|+||||||.+.+++.++.++++|+++|++|++..+ .+.+|+|+|++.+++ ..++||||+|++++++
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999998889999999999999999999999999998889988544 345689999999975 3579999999999999
Q ss_pred hHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeC
Q 024565 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240 (265)
Q Consensus 161 ~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~ 240 (265)
|+|+||+++|||+++.+|++|++|+.|+++|++ +.+++.+|..+.|++|..+++++.+.+++|+++|+++.+++|||++
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~-~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~ 237 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNP-HKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccc-hhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence 999999999999999999999999999999987 4788889999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 241 DVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 241 ~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+||+.+++++++++++.|+++++|+
T Consensus 238 ~~s~~dltv~l~k~~t~eev~~~l~ 262 (343)
T PRK07729 238 NVSLVDLVVDVKRDVTVEEINEAFK 262 (343)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 11
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.9e-55 Score=395.98 Aligned_cols=260 Identities=52% Similarity=0.848 Sum_probs=240.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
++||||+|||+|||.++|.+.++ +++|+++|++.. +.+.++|||+|||+||.|+ +.+...+++.|.++|+.+.+++
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~-~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCC-CHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEE
Confidence 48999999999999999997755 789999999954 8899999999999999998 7765434457999999999988
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC--CCceEEeeeccccccCC-CCeEEcCCCchh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKPE-LNIVSNASCTTN 157 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~--~~~~~v~~vn~~~~~~~-~~~Va~p~C~~t 157 (265)
..+|.+++|.+.++|+||||||.+.+++.++.++++|+|+|++|++.. ++|++|||+|++.+++. .++||||+|+++
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN 232 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN 232 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence 668999999888999999999999999999999999999999998854 47999999999999854 579999999999
Q ss_pred hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v 237 (265)
|++|+++||+++|||+++.+|++|++|++|+++|++ +.+|+.+|..+.||+|..+|.++.+.+++|+|.|+++.+++||
T Consensus 233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~-h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCC-CcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 999999999999999999999999999999999987 5899999999999999999999999999999999999999999
Q ss_pred eeCceEEEEEEEEecC-CCCHHHHHHHhC
Q 024565 238 PTVDVSVVDLTVRLEK-DASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~v~~~~-~~~~e~v~~~~~ 265 (265)
|+..|++.++++++++ +++.|||+++|+
T Consensus 312 Pt~nvS~vDLt~~l~k~~~t~eein~~~k 340 (442)
T PLN02237 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFR 340 (442)
T ss_pred ccCCceEEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999998 799999999874
No 12
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-54 Score=383.16 Aligned_cols=259 Identities=36% Similarity=0.696 Sum_probs=238.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcC---CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~---p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
|+||||+|||++|+.++|+|.++ +++++++|+|.. +.+.++|||+|||+||+|+ +.+.. .|+.|.++|+.+.++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~-~~v~~-~~~~l~v~g~~i~v~ 77 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELA-DAEGMAHLLKYDTSHGRFA-WDVRQ-ERDQLFVGDDAIRLL 77 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEe-cCCEEEECCEEEEEE
Confidence 48999999999999999999874 579999999964 8899999999999999998 77654 445899999999999
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C-CceEEeeeccccccCCCCeEEcCCCchh
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTN 157 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~-~~~~v~~vn~~~~~~~~~~Va~p~C~~t 157 (265)
++.+|++++|...++|+||+|||.+.++++++.++++|+|++++|++.. | .+++|||+|++.+++..++||||+|+++
T Consensus 78 ~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn 157 (336)
T PRK13535 78 HERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTN 157 (336)
T ss_pred EcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHH
Confidence 8889999999888999999999999999999999999999888988843 3 3489999999999865679999999999
Q ss_pred hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEe
Q 024565 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~v 237 (265)
|++++|+||+++|||+++.+||+|++|..|+++|++ +.+++.+|..++|++|+..+.++++.+++|++.++++.+++||
T Consensus 158 ~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~-~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRV 236 (336)
T PRK13535 158 CIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRV 236 (336)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhch-hhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEe
Confidence 999999999999999999999999999889999987 4788999999999999988888999999999999999999999
Q ss_pred eeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+++||+.+++++++++++.||++++|+
T Consensus 237 Pv~~gs~~dl~v~~~~~~t~eei~~~l~ 264 (336)
T PRK13535 237 PTINVTAIDLSVTVKKPVKVNEVNQLLQ 264 (336)
T ss_pred CccCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999874
No 13
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-53 Score=378.00 Aligned_cols=261 Identities=30% Similarity=0.551 Sum_probs=235.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECC-EEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~ 81 (265)
++||||+|||+|||.++|++.+++++|+++|+++..+.+.++|||+|||+||+|.+..+..+++ .|.++| +.+.++++
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAK 80 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEec
Confidence 3799999999999999999888889999999997668899999999999999995246655554 799998 89999998
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHh
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAP 161 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~ 161 (265)
.+|++++|++.++|+||||||.+.+.+....++++|+|++++|++++|.|++|||+|++.+++..++||||+|+++|++|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999878999999999999999999999999999999999987889999999999998656799999999999999
Q ss_pred HHHHHHHhcCceEEEEEEEeeccccccccCCCC--CCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 162 ~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~--~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+++||+++|||+++.+||+|++. .+...|.+. +++++.+|..+.|++|..++..+++.+++|++.|+++.+++|||+
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt 239 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV 239 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence 99999999999999999998885 343445443 368898988889999999998999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++|++.+++++++++++.||++++|+
T Consensus 240 ~~vs~vdltv~~~k~~t~eein~~l~ 265 (342)
T PTZ00353 240 KKGCAIDMLVRTKQPVSKEVVDSALA 265 (342)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 14
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=369.19 Aligned_cols=259 Identities=61% Similarity=0.957 Sum_probs=242.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||||+|||+|||.++|++.+++ ++|+++|++. .+++.+||+++||++||.|. +.+..+++ .+.++|+.|+++..
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence 489999999999999999999998 7999999996 47899999999999999998 66544444 78899999999988
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhC-CCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~-G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~ 159 (265)
.+|+.++|++.++|+|++|||.+.+++..++++++ |+|+|++|++..+ ++.+||++|.+.++...++|+|.||+|+|+
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL 157 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL 157 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence 89999999999999999999999999999999988 5999999999765 899999999999986678999999999999
Q ss_pred HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+|.+++|.++|||+.+.+|++|+.++.|...|+|. .+|+.+|.++.|++|..+++++++.+++|+|+|+++.+++|||+
T Consensus 158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 99999999999999999999999999999999974 68999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
..+|+.+++++++++++.|||+++|+
T Consensus 237 ~~vs~~dl~v~l~k~~t~eeIn~alk 262 (335)
T COG0057 237 PNVSVVDLTVELEKEVTVEEINAALK 262 (335)
T ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 15
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=5.8e-52 Score=367.99 Aligned_cols=257 Identities=37% Similarity=0.699 Sum_probs=233.7
Q ss_pred EEEEEccChhHHHHHHHHHcCC---CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p---~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
||||+|+|++|+.++|+|.+++ ++++++|++.. +.+.++|+++||++||.|+ +.+..+ |+.|.++|+.+.++..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA-DQASMAHLLRYDTSHGRFP-GEVKVD-GDCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC-CHHHHHHHHhhCccCCCCC-CcEEEe-CCEEEECCeEEEEEEc
Confidence 6999999999999999998764 69999999864 6788999999999999998 776544 4589999999999988
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCC-C-CceEEeeeccccccCCCCeEEcCCCchhhh
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNEHEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~-~-~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~ 159 (265)
.+|++++|...++|+||+|||.+.++++++.++++|++++++|++.. + ..++|||+|++.+++..++||||+|+|+|+
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 89999999888999999999999999999999999999888888832 3 347999999999986567999999999999
Q ss_pred HhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeee
Q 024565 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~ 239 (265)
+++|+||+++|||+++.+|++|++|+.++++|++ +.+++.+|....|++|+..+..+++++++|++.++++.+++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~-~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv 236 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAY-HHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT 236 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccc-hhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence 9999999999999999999999999999999987 468888876666999998888899999999999999999999999
Q ss_pred CceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++||+.+++++++++++.||++++|+
T Consensus 237 ~~~s~~dl~v~~~~~~~~eev~~~l~ 262 (325)
T TIGR01532 237 VNVTALDLSVTTKRDVKANEVNRVLR 262 (325)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 16
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5e-52 Score=375.65 Aligned_cols=261 Identities=39% Similarity=0.618 Sum_probs=240.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcC----CCeEEEEEecc---ccChhhhhhheeecccCCcccccceeeeC-CceEEECCE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDP---FITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEK 74 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~----p~~el~~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~ 74 (265)
+.||||+|||+|||.++|++.++ +++++++|+++ ..+.+.++|||+|||+||+|. +++.... ++.|.+||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCE
Confidence 46999999999999999998866 57999999742 236778999999999999998 7766542 347999999
Q ss_pred EEEEEecCCCCCCCccccccc--EEEEecCCcccHHhHHHHHh-CCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEE
Q 024565 75 PVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVS 150 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~D--vV~~at~~~~~~~~~~~~~~-~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va 150 (265)
.++++++.+|+++||...++| +|+|||+.+.+.+.+..+++ +|+|+|++|++.++ +|++|||+|++.+++..++||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 89999999999654 799999999999976567999
Q ss_pred cCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCce
Q 024565 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKL 230 (265)
Q Consensus 151 ~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v 230 (265)
||+|+++|++|+++||+++|||+++.+|++|++|+.|.++|++ +.+++++|+.++|++|..+|.++++.+++|++.|++
T Consensus 286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~-hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNY-HKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhh-hhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 9999999999999999999999999999999999999999986 468899999999999999999999999999999999
Q ss_pred eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+.+++|||++.|++++++++++++++.|||+++|+
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk 399 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKETSREELNEYLR 399 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 17
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-41 Score=303.15 Aligned_cols=232 Identities=22% Similarity=0.260 Sum_probs=185.3
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
.++||||+|+ |++|++++|+|.+ ||.+++..+++.+..++ .+.+.++++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------------------~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------------------TLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------------------eEEECCcceEE
Confidence 4689999999 9999999999999 89999999987643332 23333444444
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecc---ccccCCCCeEEcC
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNE---HEYKPELNIVSNA 152 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~---~~~~~~~~~Va~p 152 (265)
+++++++| .++|+||+|+|++.+.++++.+.++|++.+..|++ +++.|..+|++|+ +.++ ++++|+||
T Consensus 57 ---~~~~~~~~--~~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnP 130 (336)
T PRK08040 57 ---QDAAEFDW--SQAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVA 130 (336)
T ss_pred ---EeCchhhc--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECC
Confidence 24556666 46999999999999999999999999954445776 3468999999999 6665 47899999
Q ss_pred CCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC------------CCCCCcccCCccCCCceeecC--------
Q 024565 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD------------GPSSKDWRGGRAASFNIIPSS-------- 212 (265)
Q Consensus 153 ~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d------------~~~~~~~~~~~~~a~n~~p~~-------- 212 (265)
||++|+++++|+||+++++|+++.+++++++||+++... +.+.+...++.++++|++||.
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~ 210 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR 210 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence 999999999999999999999999999999999854221 111122567878999999993
Q ss_pred -CCh-hhHHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 213 -TGA-AKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 213 -~~~-~~~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|.| .+|+.|++..-+..++|||++|||+|||++++|++|+++++.++++++|+
T Consensus 211 ~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~ 265 (336)
T PRK08040 211 EERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALE 265 (336)
T ss_pred HhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHh
Confidence 344 56677776322234999999999999999999999999999999999884
No 18
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-40 Score=294.03 Aligned_cols=230 Identities=22% Similarity=0.326 Sum_probs=183.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
|+||+|+|+ |++|++++|+|.+ ||.+++.++++....++ .+.+++..+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--------------------------~l~~~g~~i~v~ 54 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--------------------------ELSFKGKELKVE 54 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--------------------------eeeeCCceeEEe
Confidence 379999999 9999999999999 79999999887642332 122333334442
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCC--CCeEEcCCC
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPE--LNIVSNASC 154 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~--~~~Va~p~C 154 (265)
+++..+| .++|+||+|+|++.+++++++++++|++.+.+|++ +++.|..+||+|++.++.. .++|+||||
T Consensus 55 ---d~~~~~~--~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C 129 (334)
T PRK14874 55 ---DLTTFDF--SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC 129 (334)
T ss_pred ---eCCHHHH--cCCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence 3443446 47999999999999999999999999932333665 2357899999999999752 379999999
Q ss_pred chhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccCCC--CCCcccCCccCCCceeecC-----CCh
Q 024565 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGP--SSKDWRGGRAASFNIIPSS-----TGA 215 (265)
Q Consensus 155 ~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d~~--~~~~~~~~~~~a~n~~p~~-----~~~ 215 (265)
|+|+++++|+||+++++|+++.+++++++||+++ .+|.+ +..+.+++|+++||++|+. ++|
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh 209 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGY 209 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCC
Confidence 9999999999999999999999999999998533 23311 1245678899999999997 667
Q ss_pred hhH-------HHhhc--cCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 216 AKA-------VGKVL--PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 216 ~~~-------~~~~l--~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
.+| +.+++ |++ +++|+|+|||++|||+.++|++++++++.+|++++|+
T Consensus 210 ~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~ 266 (334)
T PRK14874 210 TKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILA 266 (334)
T ss_pred cHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 766 34454 554 4999999999999999999999999999999999884
No 19
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-39 Score=291.13 Aligned_cols=232 Identities=15% Similarity=0.186 Sum_probs=182.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~--~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
|+||+|+|+ |++|++++|+|. +||.+++..+.+.+..++. +.+.|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~--------------------------l~~~~~~l~~~ 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS--------------------------VPFAGKNLRVR 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe--------------------------eccCCcceEEe
Confidence 589999999 999999999999 7899999999876433321 22223233332
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC--CCCCceEEeeeccccccC--CCCeEEcCCCc
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP--SKDAPMFVVGVNEHEYKP--ELNIVSNASCT 155 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~--~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~ 155 (265)
++++.+| .++|+||+|+|++.+.++++.++++|++.+..|++ -++.|..+|++|++.++. ++++|+||||+
T Consensus 58 ---~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~ 132 (336)
T PRK05671 58 ---EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS 132 (336)
T ss_pred ---eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence 2232334 57999999999999999999999999965556777 246899999999998873 26899999999
Q ss_pred hhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCC------------CCCcccCCccCCCceeecCC-----ChhhH
Q 024565 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP------------SSKDWRGGRAASFNIIPSST-----GAAKA 218 (265)
Q Consensus 156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~------------~~~~~~~~~~~a~n~~p~~~-----~~~~~ 218 (265)
+|+++++|+||++.++++++.+++++++||+++..... ......|+++++||++|+.. +|..|
T Consensus 133 ~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~e 212 (336)
T PRK05671 133 AVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTAL 212 (336)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHH
Confidence 99999999999988889999999999999985433211 11234678899999999874 55545
Q ss_pred HHhhccCC-------CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 219 VGKVLPAL-------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 219 ~~~~l~e~-------~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+.||.+|+ +.+++|||++|||+|||+.++|++|+++++.++++++|+
T Consensus 213 E~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~ 266 (336)
T PRK05671 213 ERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE 266 (336)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh
Confidence 45554443 335899999999999999999999999999999999884
No 20
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=288.36 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=186.0
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
+|+||+|+|+ ||+|.|++|+|.+||++|+..+.++...+..+ .+.|++++ +. ..++. +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~-------------~~l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GL-------------VDLPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-cc-------------ccccc-c
Confidence 3699999999 99999999999999999987777765344332 35567665 21 01122 2
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCC--------------C----C-CceEEee---ec
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS--------------K----D-APMFVVG---VN 138 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~--------------~----~-~~~~v~~---vn 138 (265)
..+++++ ...++|+||.|+|++.+.+.++.+++.|++.+.+|+|. + + ...+||| ++
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~ 137 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH 137 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence 2344443 13569999999999999999999999999766679981 0 1 2368887 68
Q ss_pred cccccCCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CCh
Q 024565 139 EHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGA 215 (265)
Q Consensus 139 ~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~ 215 (265)
+++|+. +++|+|||||+||..++|+||.++..|+.....+++++||.+.++..++. ...+. ...+|+.||. |.|
T Consensus 138 ~e~i~~-A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~-~~~~~-e~~~~~~~Y~~~~HrH 214 (349)
T COG0002 138 REKIRG-AKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASV-KNHFP-EVNDSLRPYGLTGHRH 214 (349)
T ss_pred HHHHhc-CCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccc-cccch-hhccccccccccccCc
Confidence 899994 99999999999999999999999977765555689999998777665542 22332 3455677666 788
Q ss_pred hhHHHhhccCCC---CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 216 AKAVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 216 ~~~~~~~l~e~~---~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
.+|+.|++..+. .++.|+||.+|++||+++|+|+++++.++.+|+.++|+
T Consensus 215 ~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~ 267 (349)
T COG0002 215 TPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYE 267 (349)
T ss_pred hHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHH
Confidence 999999998776 45899999999999999999999999999999999873
No 21
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-39 Score=288.88 Aligned_cols=232 Identities=18% Similarity=0.293 Sum_probs=181.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e---l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
.+||||+|+ |++|++++|+|.+||+|+ +..+.+.... |+.+.+.++.+.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~sa--------------------------Gk~~~~~~~~l~v 58 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA--------------------------GKTVQFKGREIII 58 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccC--------------------------CCCeeeCCcceEE
Confidence 479999999 999999999999999998 5555554322 2234444444444
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCCCCeEEcCCCc
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPELNIVSNASCT 155 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~~~~Va~p~C~ 155 (265)
. ..++++ | .++|+||+|+|++.++++++++.++|++.+..|++ +++.|..+|++|++.++...++|+||||+
T Consensus 59 ~-~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~ 133 (347)
T PRK06728 59 Q-EAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCS 133 (347)
T ss_pred E-eCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCH
Confidence 2 234443 3 57999999999999999999999999943444666 46799999999999998523799999999
Q ss_pred hhhhHhHHHHHHHhcCceEEEEEEEeecccccccc-C-----------CCCCCcccCC-------ccCCCceeecC----
Q 024565 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV-D-----------GPSSKDWRGG-------RAASFNIIPSS---- 212 (265)
Q Consensus 156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~-d-----------~~~~~~~~~~-------~~~a~n~~p~~---- 212 (265)
+|+++++|+||+++++|+++.+++++++||+++.. + +.......++ ++++||++|+.
T Consensus 134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~ 213 (347)
T PRK06728 134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFT 213 (347)
T ss_pred HHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccc
Confidence 99999999999999999999999999999974321 1 1112234566 89999999998
Q ss_pred -CChhh-------HHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 213 -TGAAK-------AVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 213 -~~~~~-------~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++..+ |.+|++..-+..+++||+|||||+||..+++++|+++++.++++++|.
T Consensus 214 ~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~ 274 (347)
T PRK06728 214 DNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLF 274 (347)
T ss_pred cCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 34333 355666322335999999999999999999999999999999999873
No 22
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=6e-39 Score=287.79 Aligned_cols=232 Identities=16% Similarity=0.196 Sum_probs=180.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
++||+|+|+ |++|++++|+|.+ ||.+++..+.+.+..++ .+..++..+.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk--------------------------~~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGK--------------------------KVTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCC--------------------------eeeecCceeEE-
Confidence 589999999 9999999999998 89999999977643332 12222323333
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccCC------CCeEE
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKPE------LNIVS 150 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~~------~~~Va 150 (265)
...+++. | .++|+||+|+|++.+.++++++.++|++.+..|++ .++.|..+|++|++.++.. +++|+
T Consensus 60 ~~~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIa 135 (344)
T PLN02383 60 EELTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIA 135 (344)
T ss_pred EeCCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEE
Confidence 2223333 3 57999999999999999999999999954555777 4568999999999998851 23999
Q ss_pred cCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccC------------CCCCCcccCCccCCCceeecCCC----
Q 024565 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD------------GPSSKDWRGGRAASFNIIPSSTG---- 214 (265)
Q Consensus 151 ~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d------------~~~~~~~~~~~~~a~n~~p~~~~---- 214 (265)
||||++|+++++|+||+++++|+++.+++++++||+++... +.+.+...++++.+||++|++|.
T Consensus 136 nPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~ 215 (344)
T PLN02383 136 NPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQEN 215 (344)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccC
Confidence 99999999999999999999999999999999999844221 11124567889999999998863
Q ss_pred -hh-hH------HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 215 -AA-KA------VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 215 -~~-~~------~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+. +| ..+++..-..+++|||+|||++|||++++|++++++++.++++++|.
T Consensus 216 g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~ 274 (344)
T PLN02383 216 GYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILA 274 (344)
T ss_pred CCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 11 22 22454222235999999999999999999999999999999999874
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=1.9e-38 Score=284.70 Aligned_cols=230 Identities=22% Similarity=0.307 Sum_probs=181.3
Q ss_pred EEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 5 KIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~--~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
||+|+|+ |++|++++++|.+ ||.++++.+++....+. .+.+.|..+.+ .+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--------------------------~~~~~~~~~~~-~~ 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--------------------------KVTFKGKELEV-NE 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--------------------------eeeeCCeeEEE-Ee
Confidence 6999999 9999999999998 79899888876542332 22233333333 21
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC--CCCeEEcCCCch
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP--ELNIVSNASCTT 156 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~~ 156 (265)
.+.++ | .++|+||+|+|++.+.+++++++++|++.+..|++ +++.|.++||+|++.+++ ..++|+||||++
T Consensus 54 ~~~~~--~--~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 54 AKIES--F--EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred CChHH--h--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22222 3 57999999999999999999999999932223554 245899999999999875 134999999999
Q ss_pred hhhHhHHHHHHHhcCceEEEEEEEeeccccccc------------cCCCCCCc-------ccCCccCCCceeecC-----
Q 024565 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSSKD-------WRGGRAASFNIIPSS----- 212 (265)
Q Consensus 157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~------------~d~~~~~~-------~~~~~~~a~n~~p~~----- 212 (265)
|+++++|+||+++++|+++.++++|++||+++. .+.+.... ..++++.++|++|+.
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 999999999999999999999999999997432 22221111 577889999999985
Q ss_pred CChhhHHHhhccCCC-------CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 213 TGAAKAVGKVLPALN-------GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 213 ~~~~~~~~~~l~e~~-------~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++|.+|+.|+.+|+. .+++++|+|||++|||++++|++++++++.+|++++|+
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~ 269 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLK 269 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 478888777777764 36999999999999999999999999999999999884
No 24
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3e-38 Score=283.03 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=176.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e---l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
|+||||+|+ |++|++++++|++||+++ +....+.. ++.. .+.++|+...+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~-------------------------~~~f~g~~~~v 54 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGA-------------------------APSFGGKEGTL 54 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCc-------------------------ccccCCCcceE
Confidence 389999999 999999999889999887 55533321 2211 11222333334
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCC---CCCCceEEeeeccccccCCC-----Ce
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYKPEL-----NI 148 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~~~~-----~~ 148 (265)
+...++++ | .++|+||+|+|+++++++++++.++|++.+|| |++ .++.|+++|++|+++++. + ++
T Consensus 55 ~~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~i 129 (369)
T PRK06598 55 QDAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKT 129 (369)
T ss_pred EecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCE
Confidence 32222333 3 57999999999999999999999999543566 555 467999999999998874 3 48
Q ss_pred EEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccc------------cC-------------------------
Q 024565 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD------------------------- 191 (265)
Q Consensus 149 Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~------------~d------------------------- 191 (265)
|+||||++|+++++|+||++.++|+++.++++|++||++.. .+
T Consensus 130 IanPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (369)
T PRK06598 130 FVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMR 209 (369)
T ss_pred EEcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcc
Confidence 99999999999999999999988999999999999998542 11
Q ss_pred CCCCCcccCCccCCCceeecCC-----ChhhH-------HHhhccC--CCCceeEEEEEeeeCceEEEEEEEEecCCCCH
Q 024565 192 GPSSKDWRGGRAASFNIIPSST-----GAAKA-------VGKVLPA--LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASY 257 (265)
Q Consensus 192 ~~~~~~~~~~~~~a~n~~p~~~-----~~~~~-------~~~~l~e--~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~ 257 (265)
+.......|+++++||++|+.. |+.+| .+|++.. -..++++||+||||++||..+++++|+++++.
T Consensus 210 ~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~ 289 (369)
T PRK06598 210 SGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPL 289 (369)
T ss_pred cCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCH
Confidence 1112344678899999999983 44444 4566632 22359999999999999999999999999999
Q ss_pred HHHHHHhC
Q 024565 258 DEIKAAIK 265 (265)
Q Consensus 258 e~v~~~~~ 265 (265)
++++++|+
T Consensus 290 ~~i~~~L~ 297 (369)
T PRK06598 290 AEIEEILA 297 (369)
T ss_pred HHHHHHHH
Confidence 99999873
No 25
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-37 Score=268.86 Aligned_cols=229 Identities=19% Similarity=0.279 Sum_probs=183.3
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCccccccee-eeCCceEEECCEEEEE
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~ 78 (265)
|.+++||| |+ |.+|++++++|.++. |.+ .+.. ++ ++ . .+.|+.+.++|+++.+
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fpv-------~~l~----l~--~s----------~~~s~gk~i~f~g~~~~V 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-LEI-------EQIS----IV--EI----------EPFGEEQGIRFNNKAVEQ 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-Cch-------hhee----ec--cc----------ccccCCCEEEECCEEEEE
Confidence 78899999 99 999999999999874 421 1111 11 01 1 2445678888888877
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccC--CCCeEEc
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKP--ELNIVSN 151 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~--~~~~Va~ 151 (265)
. +.++.+| .++|++|| ++...++++++.+.++|+ +|| |++ ++|+|++||++|.+.++. ..++|+|
T Consensus 56 ~---~l~~~~f--~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIan 127 (322)
T PRK06901 56 I---APEEVEW--ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSL 127 (322)
T ss_pred E---ECCccCc--ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEEC
Confidence 3 3444455 67999999 999999999999999999 777 444 467999999999998874 2579999
Q ss_pred CCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccCCCCCCcccCCccCCCceeecCC-ChhhH
Q 024565 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSSKDWRGGRAASFNIIPSST-GAAKA 218 (265)
Q Consensus 152 p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d~~~~~~~~~~~~~a~n~~p~~~-~~~~~ 218 (265)
|+|++++++++|+||++.|+|+++.++++|++||++. .+++.+. ....++++||++|+.. +-..|
T Consensus 128 PNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~--~~~~~~iAFNviP~ig~~m~~E 205 (322)
T PRK06901 128 PDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL--DEEEQRLAFDVFPANAQNLELQ 205 (322)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC--CCCceeeeccccccCCccHHHH
Confidence 9999999999999999999999999999999999732 1121111 1223789999999994 45678
Q ss_pred HHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 219 VGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 219 ~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
.+|++|++ .+++.||+||||++||+.+++++|+++++.+++.++|.
T Consensus 206 trKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~ 251 (322)
T PRK06901 206 LQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQ 251 (322)
T ss_pred HHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 89999877 24899999999999999999999999999999999873
No 26
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=268.92 Aligned_cols=232 Identities=23% Similarity=0.315 Sum_probs=176.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~-~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
|+||||+|+ |.+|++++++|.+ |+.++.+.+.....+ ++. + +.+.++.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~----------~---------------~~f~~~~~~v~ 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK----------Y---------------IEFGGKSIGVP 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc----------c---------------ccccCccccCc
Confidence 489999999 9999999999998 888886655543222 211 1 22223222221
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccCC--C-CeEEc
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKPE--L-NIVSN 151 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~~--~-~~Va~ 151 (265)
. .-.+..+| +++|+||+|.|..+++++.+++.++|+ +|| |+. .+|+|++||++|.+.+... . ++|+|
T Consensus 56 ~-~~~~~~~~--~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 56 E-DAADEFVF--SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred c-cccccccc--ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEEC
Confidence 1 11344545 579999999999999999999999998 888 444 4679999999999887642 2 39999
Q ss_pred CCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc-ccCCCC---------CCcccCCccCCCceeecCCC-----hh
Q 024565 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPS---------SKDWRGGRAASFNIIPSSTG-----AA 216 (265)
Q Consensus 152 p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~-~~d~~~---------~~~~~~~~~~a~n~~p~~~~-----~~ 216 (265)
|+|++..++++|+||+++++|+++.++|+|++||++. .++... ..-.-.+++++||++|+..+ +.
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t 210 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYT 210 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCcc
Confidence 9999999999999999999999999999999999854 332210 00011157899999999954 55
Q ss_pred hHH-------HhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565 217 KAV-------GKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 264 (265)
Q Consensus 217 ~~~-------~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~ 264 (265)
+|+ +|+++.-..+++++|+|||+++||+..++++|+++++.+|+.+.+
T Consensus 211 ~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~ 265 (334)
T COG0136 211 KEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL 265 (334)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence 554 456665455799999999999999999999999999999998553
No 27
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=6.2e-37 Score=269.89 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=169.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||||+|+ ||+|++++|+|.+||+++++++.+..... +
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~-----------------------------------~----- 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD-----------------------------------A----- 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc-----------------------------------c-----
Confidence 699999999 99999999999999999999997642110 0
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeec---cccccCCCCeEEcCCCc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVN---EHEYKPELNIVSNASCT 155 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn---~~~~~~~~~~Va~p~C~ 155 (265)
.+.++. | .++|+||+|+|++.+.++++++.+.|++.+.+|++ +++.|..+|++| ++.++ .+++|+|||||
T Consensus 42 ~~~~~~-~--~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanPgC~ 117 (313)
T PRK11863 42 AARREL-L--NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANPGCY 117 (313)
T ss_pred cCchhh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcCCcH
Confidence 011111 3 46999999999999999999999999965556887 356788888895 56676 48899999999
Q ss_pred hhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCccc--CCccCCCceeecC----CChhhHHHhhccCCCCc
Q 024565 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWR--GGRAASFNIIPSS----TGAAKAVGKVLPALNGK 229 (265)
Q Consensus 156 ~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~--~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~~ 229 (265)
+|+++++|+||+++..+++...++++++||.+..+.... .... +. .+.+|+.||. |.|.+|+.|++..+ ..
T Consensus 118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~-~~~~~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l~~~-~~ 194 (313)
T PRK11863 118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMI-AAYEAAPD-GKAPAFRLYGLGLAHKHLPEMQAHAGLA-RR 194 (313)
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccch-HHHhhhhh-hhccCeeeccCCcCCcchHHHHHHhccc-cC
Confidence 999999999999987776654589999987755544322 1222 22 4667888887 55778888877655 35
Q ss_pred eeEEEEEeeeCceEEEEEEEEe---cCCCCHHHHHHHhC
Q 024565 230 LTGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK 265 (265)
Q Consensus 230 v~~~~~~vP~~~G~~~~~~v~~---~~~~~~e~v~~~~~ 265 (265)
+.|+|+.+|++|||+.|+|+++ +++++.+|++++|+
T Consensus 195 ~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T PRK11863 195 PIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALA 233 (313)
T ss_pred cEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHH
Confidence 8899999999999999999997 88899999999874
No 28
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=1e-36 Score=266.68 Aligned_cols=215 Identities=12% Similarity=0.071 Sum_probs=167.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.||+|+|+ ||+|.|++|+|.+||++|++.+++.+. . + ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-~---------~------------------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-K---------D------------------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-c---------C------------------------------cC
Confidence 58999999 999999999999999999999987531 0 0 01
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeee---ccccccCCCCeEEcCCCch
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGV---NEHEYKPELNIVSNASCTT 156 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~v---n~~~~~~~~~~Va~p~C~~ 156 (265)
+.+++ + .++|+||+|+|++.+.++++.+.++|++.+.+|++ +++.|..+||+ +++.++ .+++|+|||||+
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC~a 117 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGCYP 117 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCCHH
Confidence 12222 1 46899999999999999999999999965556887 34677888889 456777 489999999999
Q ss_pred hhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCccc----CCccCCCceeecC----CChhhHHHhhccCCCC
Q 024565 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWR----GGRAASFNIIPSS----TGAAKAVGKVLPALNG 228 (265)
Q Consensus 157 ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~----~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~ 228 (265)
|+++++|+||+++..+++..+++++++||.+..+..... ... +. ...+|+.||. |.|.+|+.+.+... .
T Consensus 118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~-~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~ 194 (310)
T TIGR01851 118 TGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIA-DYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-L 194 (310)
T ss_pred HHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhH-Hhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence 999999999999977876556999999996544433221 111 11 2345566665 56778888877654 4
Q ss_pred ceeEEEEEeeeCceEEEEEEEEe---cCCCCHHHHHHHhC
Q 024565 229 KLTGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK 265 (265)
Q Consensus 229 ~v~~~~~~vP~~~G~~~~~~v~~---~~~~~~e~v~~~~~ 265 (265)
++.|+||.+|++||+++|+|+++ ++.++.+|++++|+
T Consensus 195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~ 234 (310)
T TIGR01851 195 PPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALA 234 (310)
T ss_pred CEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHH
Confidence 59999999999999999999999 88899999998874
No 29
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=1.3e-36 Score=273.88 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=171.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
+||+|+|+ |++|++++|+|.+||+++++++.++.. .++.+. +.++++. . . ..+.+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~------~~~~~l~-~---------~----~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS------EVHPHLR-G---------L----VDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH------HhCcccc-c---------c----CCcee-ec
Confidence 58999999 999999999999999999998855432 232221 2232221 0 0 01111 11
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CC-------------------CCceEEeeecc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SK-------------------DAPMFVVGVNE 139 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~-------------------~~~~~v~~vn~ 139 (265)
.+++++ . .++|+||+|+|++.+.+++++++++|++.+.+|++ ++ +.|..+|++|+
T Consensus 60 ~~~~~~--~-~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 60 IDEEEI--A-EDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred CCHHHh--h-cCCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 233333 1 37999999999999999999999999844445776 21 35566778999
Q ss_pred ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhh
Q 024565 140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK 217 (265)
Q Consensus 140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~ 217 (265)
++++. +++|+||||++|+++++|+||+++++++ +..+++++++||+++......+..+..++..++|+.| |.|.+
T Consensus 137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~--h~h~~ 213 (346)
T TIGR01850 137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTG--HRHTP 213 (346)
T ss_pred HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCC--cCcHH
Confidence 99985 8899999999999999999999998886 5778888888888654432222233333344555554 45777
Q ss_pred HHHhhccCCC---CceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 218 AVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 218 ~~~~~l~e~~---~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+.+.+..+. .+++|+|+++|++|||+.++|++++++++.++++++|+
T Consensus 214 Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~ 264 (346)
T TIGR01850 214 EIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYE 264 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHH
Confidence 7777765542 25999999999999999999999999999999999873
No 30
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=2.7e-36 Score=271.68 Aligned_cols=235 Identities=18% Similarity=0.217 Sum_probs=175.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||+|+|+ |++|++++++|.+||++++++++++....+.+. +.++.+. + + .... +.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~------~~~~~~~--------~--~----~~~~-~~- 59 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS------DVHPHLR--------G--L----VDLV-LE- 59 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH------HhCcccc--------c--c----cCce-ee-
Confidence 589999999 999999999999999999999998542332221 1122121 0 0 0011 11
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-C--C-C------------------CceEEeeecc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S--K-D------------------APMFVVGVNE 139 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~--~-~------------------~~~~v~~vn~ 139 (265)
+.++..+ .++|+||+|+|++.+.+.++.++++|+..+..|++ + + + .|..+|++|+
T Consensus 60 -~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~ 136 (343)
T PRK00436 60 -PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNR 136 (343)
T ss_pred -cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCH
Confidence 2222222 56999999999999999999999999843334766 1 2 2 4667788999
Q ss_pred ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCce--EEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhh
Q 024565 140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK 217 (265)
Q Consensus 140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~--~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~ 217 (265)
+++++ +++|+||||++|+++++|+||++.++|+ +..+++++++||+++......+..+..+...+||++|+ .|.+
T Consensus 137 ~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h--~h~~ 213 (343)
T PRK00436 137 EEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGH--RHTP 213 (343)
T ss_pred HHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCC--CCHH
Confidence 99985 7999999999999999999999998887 78899999999986543222222233344456777664 4678
Q ss_pred HHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 218 AVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 218 ~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|+.+.+..+.+.++|+|+++|++|||+.+++++|+++++.+|++++|+
T Consensus 214 Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~ 261 (343)
T PRK00436 214 EIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYE 261 (343)
T ss_pred HHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 887777655336999999999999999999999999999999999883
No 31
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=7.9e-36 Score=266.58 Aligned_cols=231 Identities=16% Similarity=0.191 Sum_probs=175.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEE---EEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVEL---VAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
+||||+|+ |.+|++++++|.+|++|.+ ....+.+ ++|+.+.++|+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--------------------------s~g~~~~f~~~~~~v~ 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--------------------------LGQAAPSFGGTTGTLQ 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--------------------------hCCCcCCCCCCcceEE
Confidence 48999999 9999999999998877753 2222221 1222333444444342
Q ss_pred ecCCCCCC-CcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE---cCC--CCCCceEEeeeccccccCC--CCe--E
Q 024565 80 GVRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNEHEYKPE--LNI--V 149 (265)
Q Consensus 80 ~~~~~~~~-~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi---s~~--~~~~~~~v~~vn~~~~~~~--~~~--V 149 (265)
+.++. +| .++|+||+|+|..+++++.+.+.++|+..+|| |++ ++|+|++||++|++.++.. ..+ |
T Consensus 55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i 129 (366)
T TIGR01745 55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF 129 (366)
T ss_pred ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence 23222 23 67999999999999999999999999433777 333 4679999999999887742 346 8
Q ss_pred EcCCCchhhhHhHHHHHHHhcCceEEEEEEEeecccccc------------ccC--------C-----------------
Q 024565 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVD--------G----------------- 192 (265)
Q Consensus 150 a~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~------------~~d--------~----------------- 192 (265)
+||+|+++.++++|+||++.++|+++.++|+|++||++. ..+ +
T Consensus 130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~ 209 (366)
T TIGR01745 130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS 209 (366)
T ss_pred ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence 999999999999999999999999999999999999852 011 0
Q ss_pred CCCCcccCCccCCCceeecCC-----ChhhH-------HHhhccC-CCCceeEEEEEeeeCceEEEEEEEEecCCCCHHH
Q 024565 193 PSSKDWRGGRAASFNIIPSST-----GAAKA-------VGKVLPA-LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDE 259 (265)
Q Consensus 193 ~~~~~~~~~~~~a~n~~p~~~-----~~~~~-------~~~~l~e-~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~ 259 (265)
.......|+++++||++|+.. |+.+| .+|++.. -+.++++||+||||++||..+++++|+++++.++
T Consensus 210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~ 289 (366)
T TIGR01745 210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET 289 (366)
T ss_pred CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence 011344678999999999984 44444 4566643 2345999999999999999999999999999999
Q ss_pred HHHHhC
Q 024565 260 IKAAIK 265 (265)
Q Consensus 260 v~~~~~ 265 (265)
++++|+
T Consensus 290 i~~~L~ 295 (366)
T TIGR01745 290 IEEIIR 295 (366)
T ss_pred HHHHHH
Confidence 999873
No 32
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-37 Score=258.35 Aligned_cols=238 Identities=67% Similarity=1.074 Sum_probs=222.5
Q ss_pred CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCCCCCcccccccEEEEecCCc
Q 024565 25 RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 104 (265)
Q Consensus 25 ~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~ 104 (265)
..+++++++++++.++.++.|+++||++||+|. +.++.+++ .+.++|+.+.++++.+|.+++|...+.|+|+++|+.+
T Consensus 8 ~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f 85 (285)
T KOG0657|consen 8 RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVF 85 (285)
T ss_pred cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccc
Confidence 445999999999889999999999999999999 77666666 4556799999999999999999999999999999999
Q ss_pred ccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeecc
Q 024565 105 TDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (265)
Q Consensus 105 ~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~s 184 (265)
++.+.+..++++|+|++++|+++.|.|++|+|+|.+.+.+...+|||.+|++.|++|..+.++.+|||.++.+|++|+.+
T Consensus 86 ~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~t 165 (285)
T KOG0657|consen 86 TTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIT 165 (285)
T ss_pred cccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeec
Confidence 99999999999999999999999999999999999999875668999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHh
Q 024565 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 264 (265)
Q Consensus 185 g~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~ 264 (265)
++|+++|+|+...|+.+|...+|++|...|.++++.+.+||++++++.++++||+. ....+++++++++.+.|+++++.
T Consensus 166 atQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvv 244 (285)
T KOG0657|consen 166 ATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVV 244 (285)
T ss_pred cccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999876
Q ss_pred C
Q 024565 265 K 265 (265)
Q Consensus 265 ~ 265 (265)
+
T Consensus 245 k 245 (285)
T KOG0657|consen 245 K 245 (285)
T ss_pred H
Confidence 3
No 33
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1e-35 Score=268.76 Aligned_cols=235 Identities=21% Similarity=0.259 Sum_probs=176.2
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccccChhhhhhheeecccCCcccccceeeeCCceEEECC--EEE
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPV 76 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~ 76 (265)
|||+||+|+|+ |++|++++++|.+||+++++.+ .+.+..++.+. +.++... .++ + .+ ..+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~------~~~~~~~------~~~--~--~~~~~~~ 64 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYG------EAVRWQL------DGP--I--PEEVADM 64 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccc------ccccccc------ccc--c--cccccce
Confidence 78899999999 9999999999999999999999 55432332221 1111100 000 0 00 112
Q ss_pred EEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecccccc----------
Q 024565 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYK---------- 143 (265)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~---------- 143 (265)
.+ ...+++.+ .++|+||+|+|++.+.++++.+.+.|++.++.|++ .++.|..++++|.+.+.
T Consensus 65 ~v-~~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~ 139 (349)
T PRK08664 65 EV-VSTDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRG 139 (349)
T ss_pred EE-EeCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhcc
Confidence 22 22344443 47999999999999999999999999965556776 23466778888865331
Q ss_pred CCCCeEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC----CChhhHH
Q 024565 144 PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAV 219 (265)
Q Consensus 144 ~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~----~~~~~~~ 219 (265)
++.++|+|||||+|+++++|+||++ ++|+++.+++++++||+++... . ...+++|++||. |.|.+|+
T Consensus 140 ~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~-----~---~~~~~~N~~p~~~~~ehrh~~Ei 210 (349)
T PRK08664 140 WDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV-----P---SMDIVDNVIPYIGGEEEKIEKET 210 (349)
T ss_pred CCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc-----h---hhhhhcCcccccCchhhhhhHHH
Confidence 1257999999999999999999999 8999999999999998765322 1 235899999988 4456777
Q ss_pred HhhccCC--------CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 220 GKVLPAL--------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 220 ~~~l~e~--------~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
.+++... ..+++|+|++||++|||++++|++++++++.+|++++|+
T Consensus 211 ~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~ 264 (349)
T PRK08664 211 LKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALE 264 (349)
T ss_pred HHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 7776543 556999999999999999999999999999999999874
No 34
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=3.9e-35 Score=260.02 Aligned_cols=232 Identities=24% Similarity=0.309 Sum_probs=190.3
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 84 (265)
|||+|+|+||+.++|.+.++|++++++|++...+ ...+++++.||++|+.+. ..+..++ ..+.+. .++
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~-~~~~~~~--------~~l~v~--g~~ 69 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEE-FIPRFEE--------AGIEVA--GTL 69 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCC-cceEecc--------CceEec--CCH
Confidence 6999999999999999998999999999995322 236777777888773332 1222111 123332 345
Q ss_pred CCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCeEEcCCCchhhhHhH
Q 024565 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASCTTNCLAPL 162 (265)
Q Consensus 85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~Va~p~C~~ta~~~~ 162 (265)
+++. .++|+|++|||.+.+.+..+.+++.|+|.+++|++..+ .+.|++++|.+.+.+ .++|+|.||+|||+++.
T Consensus 70 eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~-~~~vs~aSCtTn~Lap~ 145 (333)
T TIGR01546 70 EDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG-KDYVRVVSCNTTGLVRT 145 (333)
T ss_pred HHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc-CceEEecCchHhhHHHH
Confidence 6662 57999999999999999999999999998989999765 468999999998875 45999999999999999
Q ss_pred HHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeec-CC---ChhhHHHhhccCCCCceeEEEEEee
Q 024565 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMAFRVP 238 (265)
Q Consensus 163 L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~-~~---~~~~~~~~~l~e~~~~v~~~~~~vP 238 (265)
+++|.++|||+.+.+|++|+ ++.+. +++.+| +.|++|. .. .+++.+.+++|+++ ++.+++|||
T Consensus 146 ~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVP 212 (333)
T TIGR01546 146 LNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVP 212 (333)
T ss_pred HHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeC
Confidence 99999999999999999997 54442 456665 6899998 22 45899999999998 999999999
Q ss_pred eCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 239 ~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+..+|+++++++++++++.|||+++|+
T Consensus 213 t~~vs~~dl~v~l~~~~t~eeV~~~l~ 239 (333)
T TIGR01546 213 TTLMHVHSIMVELKKPVTKDDIIDILE 239 (333)
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999884
No 35
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=4.1e-35 Score=263.99 Aligned_cols=233 Identities=20% Similarity=0.260 Sum_probs=176.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECC--EEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPVTVF 79 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~ 79 (265)
+||+|+|+ |++|++++++|.+||+++++++.+...+ ++.+. ..++.+. .++ + .+ ..+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~------~~~~~~~------~~~--~--~~~~~~~~~- 63 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYG------EAVKWIE------PGD--M--PEYVRDLPI- 63 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcch------hhccccc------cCC--C--ccccceeEE-
Confidence 58999999 9999999999999999999999754322 22221 1122110 000 0 00 11222
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeeccccccC---------CCC
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYKP---------ELN 147 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~~---------~~~ 147 (265)
...+++. | .++|+||+|+|++.+.++.+.+.++|++.++.|++ +++.|.++|++|.+.+.. +++
T Consensus 64 ~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~ 139 (341)
T TIGR00978 64 VEPEPVA--S--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGF 139 (341)
T ss_pred EeCCHHH--h--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCcc
Confidence 2223332 2 57999999999999999999999999965555777 355788888887653321 357
Q ss_pred eEEcCCCchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCC----ChhhHHHhhc
Q 024565 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST----GAAKAVGKVL 223 (265)
Q Consensus 148 ~Va~p~C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~----~~~~~~~~~l 223 (265)
+|+|||||+|+++++|+||+++++|+++.+++++++||+++... . .+.+++|++||.. .|.+|+.+++
T Consensus 140 iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il 211 (341)
T TIGR00978 140 IVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKIL 211 (341)
T ss_pred EEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999865421 1 2468999999984 4567888888
Q ss_pred cCCCC--------ceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 224 PALNG--------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 224 ~e~~~--------~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+.+.+ +++|+|++||++|||++++|++++++++.++++++|+
T Consensus 212 ~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~ 261 (341)
T TIGR00978 212 GKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALK 261 (341)
T ss_pred CccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 77632 5999999999999999999999999999999999884
No 36
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.6e-35 Score=262.52 Aligned_cols=233 Identities=27% Similarity=0.345 Sum_probs=177.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeec--ccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+||||+|+|+||+.+++++.++|++||+++++.. .++.+|+.++. ..++.++ .... .+++..+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~--~~~~~~la~~~G~~~~~~~~-~~~~-------~~~~~~i~V~- 69 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK--PDYEARVAVEKGYPLYVADP-EREK-------AFEEAGIPVA- 69 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC--hHHHHHHHHhcCCCccccCc-cccc-------cccCCceEEc-
Confidence 48999999999999999999999999999999863 44444444321 1233332 1100 0112223342
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-CCCCc--eEEeeeccccccCCCCeEEcCCCchh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAP--MFVVGVNEHEYKPELNIVSNASCTTN 157 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-~~~~~--~~v~~vn~~~~~~~~~~Va~p~C~~t 157 (265)
.+++++ + .++|+||+|||.+.+.+.++.++++|+ ++|+++. ..++| .++|++|.+.+.+ .++|+||+|+||
T Consensus 70 -~~~~el-~--~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~ 143 (341)
T PRK04207 70 -GTIEDL-L--EKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTT 143 (341)
T ss_pred -CChhHh-h--ccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHH
Confidence 234444 2 579999999999999999999999995 4666544 23322 4799999998874 458999999999
Q ss_pred hhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC----CChhhHHHhhccCCCCceeEE
Q 024565 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM 233 (265)
Q Consensus 158 a~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~----~~~~~~~~~~l~e~~~~v~~~ 233 (265)
+++++|+||+++|||+++.+|++|+.|+ + .++ .|....|++|+. ..+.+++.+++|++. ++.+
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~ 210 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM 210 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence 9999999999999999999999999773 1 122 245667777641 223478899999997 9999
Q ss_pred EEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 234 ~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
++|||+++||+.+++++|+++++.||++++|+
T Consensus 211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~ 242 (341)
T PRK04207 211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALE 242 (341)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999874
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=1.2e-34 Score=262.99 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=161.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
++||+|+|+ |++|++++|+|.+||+++++.+.+....++.+. ..++++. +.....+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~------~~~~~l~---------------~~~~~~~~- 95 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG------SVFPHLI---------------TQDLPNLV- 95 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch------hhCcccc---------------Ccccccee-
Confidence 579999999 999999999999999999999987643443211 1122221 00111111
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCC--------Cce--------EEe---eecc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKD--------APM--------FVV---GVNE 139 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~--------~~~--------~v~---~vn~ 139 (265)
+.+..+| .++|+||+|+|++.+.++++.+ +.|++.+.+|++ +++ .|. ++| ++|+
T Consensus 96 -~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r 171 (381)
T PLN02968 96 -AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQR 171 (381)
T ss_pred -cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCH
Confidence 1222223 5799999999999999999985 788754556777 222 232 233 3577
Q ss_pred ccccCCCCeEEcCCCchhhhHhHHHHHHHhcCc--eEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CC
Q 024565 140 HEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TG 214 (265)
Q Consensus 140 ~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i--~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~ 214 (265)
++++ .+++|+|||||+|+++++|+||+++++| ++..+.+++++||+++.....++ +. +...|+.||. |.
T Consensus 172 ~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l----~~-e~~~n~~~y~~~~h~ 245 (381)
T PLN02968 172 EEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANL----YT-EIAEGIGAYGVTRHR 245 (381)
T ss_pred HHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhh----HH-HhcccceeeccCCCC
Confidence 7787 4889999999999999999999999999 56777888888887654432211 11 2333455555 34
Q ss_pred hhhHHHhhccCC---CCceeEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 215 AAKAVGKVLPAL---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 215 ~~~~~~~~l~e~---~~~v~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
|.+|+.+.+..+ +.+++|||+++|++|||+.++|++++++++.+|++++|+
T Consensus 246 h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~ 299 (381)
T PLN02968 246 HVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLK 299 (381)
T ss_pred CcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 445543322111 235999999999999999999999999999999999874
No 38
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1e-33 Score=224.98 Aligned_cols=149 Identities=56% Similarity=0.993 Sum_probs=135.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 83 (265)
|||||+|||+|||.++|++..+|++|+++|++...+.+.++|+++|||+||.|. +.+..+++ .|.++|+.++++++.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999878999999999999999998 77666665 7999999999999899
Q ss_pred CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC--CceEEeeeccccccCCCCeEEcCCC
Q 024565 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNEHEYKPELNIVSNASC 154 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~--~~~~v~~vn~~~~~~~~~~Va~p~C 154 (265)
|++++|...++|+|++|||.+.+++.++.++++|+|+|++|++.++ .|++|+|+|.+.+.++.++||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999655 8999999999999975599999999
No 39
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.97 E-value=5.2e-30 Score=204.05 Aligned_cols=148 Identities=55% Similarity=0.942 Sum_probs=134.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 83 (265)
+||||+|+|+||+.+++.+.+++++++++++++ .+.+.++||++||++||.|. .++..+++ .+.++|+.+++++..+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 589999999999999999999999999999996 57899999999999999998 66665555 6889999999998889
Q ss_pred CCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCC-CceEEeeeccccccCCCCeEEcCCC
Q 024565 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNEHEYKPELNIVSNASC 154 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~-~~~~v~~vn~~~~~~~~~~Va~p~C 154 (265)
|.+++|.+.++|+|+|||+.+.+++..+.++++|+|+|++|++.++ .+++|+|+|.+.++++.++|||.||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999765 4589999999999865569999999
No 40
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.94 E-value=7.2e-27 Score=193.71 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=163.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
.+|||.+|+ ||.|+.+++++.+||.+|+..+.++...++.+. .|++.. +... .+..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-------~ytk~e-----------iqy~--~lst--- 75 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-------VYTKLE-----------IQYA--DLST--- 75 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-------Ccchhh-----------eeec--ccch---
Confidence 589999999 999999999999999999999998865554321 122221 1000 0111
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE--cCCCCCCc--eEEee---ec-cccccCCCCeEEcCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAP--MFVVG---VN-EHEYKPELNIVSNAS 153 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi--s~~~~~~~--~~v~~---vn-~~~~~~~~~~Va~p~ 153 (265)
.|...+.. ...+|..+.++|..+.+.++.......-|..+| |++....| .++|| +| +++|++ ++.|+|||
T Consensus 76 ~D~~klee-~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n-a~~iaNPG 153 (340)
T KOG4354|consen 76 VDAVKLEE-PHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN-ARLIANPG 153 (340)
T ss_pred hhHHHhhc-CCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh-hhhccCCC
Confidence 12211110 135788889999988877776655544444444 77743344 68887 57 788985 89999999
Q ss_pred CchhhhHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecC---CChhhHHHhhccCCCCce
Q 024565 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKL 230 (265)
Q Consensus 154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~---~~~~~~~~~~l~e~~~~v 230 (265)
||+|.+.+.|.||.+...... .+.++||.+.++.+++. ...-..++.|++||. |-|.+|+.+- +...+
T Consensus 154 CYaTgsQl~l~Pllk~i~g~p----~ifgvSGySGAGtkpsp--kNd~~~l~nnlipY~ltdHiHerEIs~r---~k~~V 224 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAILGKP----EIFGVSGYSGAGTKPSP--KNDYSELANNLIPYGLTDHIHEREISQR---SKVTV 224 (340)
T ss_pred cccccCcccchHHHHHhcCCc----ceeeeccccCCCCCCCC--ccCHHHHhcCCccccccccchhHhHHHh---hCCce
Confidence 999999999999998654432 25677777666655543 233456889999998 4455665553 23469
Q ss_pred eEEEEEeeeCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 231 ~~~~~~vP~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
.|+||..|+|+|+..|+++.+++.++.||+.+.|+
T Consensus 225 aF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk 259 (340)
T KOG4354|consen 225 AFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYK 259 (340)
T ss_pred eechhHHHHhhhceEEEEEeecCcccHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 41
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=176.16 Aligned_cols=236 Identities=18% Similarity=0.229 Sum_probs=171.6
Q ss_pred CCccEEE-EEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565 1 MGKVKIG-INGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~i~vg-I~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 77 (265)
|+-.|+| |+|+ |.+|++.+.+|.+||++++..+..... .+.+.+ ..++|++... ++-.-+++.
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya-------~a~~wkqt~~-------lp~~~~e~~ 66 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYA-------FAGNWKQTDL-------LPESAHEYT 66 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceE-------ecccchhccc-------ccchhhhhh
Confidence 6666777 9999 999999999999999999888744332 343321 1345542110 110112233
Q ss_pred EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC-----CCCCceEEeeeccccccC--------
Q 024565 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-----SKDAPMFVVGVNEHEYKP-------- 144 (265)
Q Consensus 78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~-----~~~~~~~v~~vn~~~~~~-------- 144 (265)
+ .+.+++.| .++|+||+.++...+.+.-+.+.++|. +++|.. .+++|++||++|+++++.
T Consensus 67 V-~ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~ 139 (361)
T KOG4777|consen 67 V-EECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTG 139 (361)
T ss_pred H-hhcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccC
Confidence 3 33567777 789999999999999999999999998 777655 245999999999987762
Q ss_pred ---CCCeEEcCCCchhhhHhHHHHHHHhcC-ceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChh----
Q 024565 145 ---ELNIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA---- 216 (265)
Q Consensus 145 ---~~~~Va~p~C~~ta~~~~L~pL~~~~~-i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~---- 216 (265)
..-+|+|++|.+..+..+|+||+.+|| |.+..++++|+.||++-.-..+ +-++.+|++|++.+..
T Consensus 140 k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv~-------~vdildnilp~iggee~k~e 212 (361)
T KOG4777|consen 140 KMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGVE-------LVDILDNILPGIGGEENKFE 212 (361)
T ss_pred CCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCch-------HHHHHHhhcCCCCccchhhh
Confidence 356999999999999999999999995 8888889999999975321111 2246778899886642
Q ss_pred hHHHhhccCCC-----------CceeEEEEEeeeCceEEEEEEEEecCC--CCHHHHHHHh
Q 024565 217 KAVGKVLPALN-----------GKLTGMAFRVPTVDVSVVDLTVRLEKD--ASYDEIKAAI 264 (265)
Q Consensus 217 ~~~~~~l~e~~-----------~~v~~~~~~vP~~~G~~~~~~v~~~~~--~~~e~v~~~~ 264 (265)
.|..++|...+ ..++..|-|+|+..||+..+.++|+-+ .+.+++..++
T Consensus 213 wet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l 273 (361)
T KOG4777|consen 213 WETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL 273 (361)
T ss_pred HHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence 34455554332 136788999999999999999999844 3456766554
No 42
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.78 E-value=1.8e-18 Score=138.95 Aligned_cols=106 Identities=66% Similarity=0.986 Sum_probs=99.5
Q ss_pred hHhHHHHHHHhcCceEEEEEEEeeccccccccCCCCCCcccCCccCCCceeecCCChhhHHHhhccCCCCceeEEEEEee
Q 024565 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238 (265)
Q Consensus 159 ~~~~L~pL~~~~~i~~~~v~~v~~~sg~~~~~d~~~~~~~~~~~~~a~n~~p~~~~~~~~~~~~l~e~~~~v~~~~~~vP 238 (265)
|++.+++|+++|||+++.+|++|+.+..|..+|++. .+++.||..+.|++|..+++++++.+++|+|+++++.+++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 689999999999999999999999999999999976 8999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEEEecCCCCHHHHHHHhC
Q 024565 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 239 ~~~G~~~~~~v~~~~~~~~e~v~~~~~ 265 (265)
+..||+++++++++++++.|||+++|+
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~ 106 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALK 106 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHH
T ss_pred ecccCceEEEEecccchhhhhhhhhhh
Confidence 999999999999999999999999874
No 43
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.69 E-value=5.1e-17 Score=142.44 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=109.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+++||||+|.|.+|..++..+.+.|+++++++++...+...++.- . +.| ++.+.
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A----~------------~~G---------i~~~~ 56 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA----R------------RLG---------VATSA 56 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH----H------------HcC---------CCccc
Confidence 5679999999999999999999999999999999874332111100 0 001 00000
Q ss_pred cCCCC----CCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE-cCCCCCCceEEeeeccccccC--CCCeEEcCC
Q 024565 81 VRNPE----EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNEHEYKP--ELNIVSNAS 153 (265)
Q Consensus 81 ~~~~~----~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi-s~~~~~~~~~v~~vn~~~~~~--~~~~Va~p~ 153 (265)
.+.+ +.+| +++|+||+|||+..|.++++.++++|+ .++ ..+....|++||++|.+++.. +.++|+||+
T Consensus 57 -~~ie~LL~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~ 131 (302)
T PRK08300 57 -EGIDGLLAMPEF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGG 131 (302)
T ss_pred -CCHHHHHhCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECcc
Confidence 1111 1122 579999999999999999999999997 444 222236899999999887764 358999999
Q ss_pred CchhhhHhHHHHHHHhcCceEEEEEEEeecc
Q 024565 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (265)
Q Consensus 154 C~~ta~~~~L~pL~~~~~i~~~~v~~v~~~s 184 (265)
|.++.++.+|+|+.+. .+.+.. .+++++|
T Consensus 132 ~ati~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 132 QATIPIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHHHHHhcccCcC-ceeeee-eeehhhc
Confidence 9999999999996543 555543 6778887
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.67 E-value=6.4e-17 Score=124.75 Aligned_cols=114 Identities=26% Similarity=0.331 Sum_probs=82.9
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
||+|+|+ |++|++++++|.+||+++++.+.+++. .+..+. ..++.+. + ...+.+.. .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~------~~~~~~~--------~------~~~~~~~~-~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS------EVFPHPK--------G------FEDLSVED-A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH------HTTGGGT--------T------TEEEBEEE-T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee------hhccccc--------c------ccceeEee-c
Confidence 7999998 999999999999999999999998875 343332 2233221 0 11222321 2
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC---CCCCceEEeeecccccc
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNEHEYK 143 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~---~~~~~~~v~~vn~~~~~ 143 (265)
+.+++ .++|+||+|+|++.+.++++.+++.|++.+..|++ .++.|..+|++|+++++
T Consensus 60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred chhHh----hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 34444 68999999999999999999999999944444666 34688899999999886
No 45
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.60 E-value=4.8e-15 Score=129.61 Aligned_cols=153 Identities=21% Similarity=0.202 Sum_probs=110.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
++||||+|.|.+|+.++..+.+.+++++++++++..+...+... .+.| ++.+. .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A----------------~~~G---------i~~~~-~ 54 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA----------------RELG---------VKTSA-E 54 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH----------------HHCC---------CCEEE-C
Confidence 47999999999999998888888899999999874321111100 0111 11111 1
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccC--CCCeEEcCCCchhhhH
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP--ELNIVSNASCTTNCLA 160 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~--~~~~Va~p~C~~ta~~ 160 (265)
+.+++ ....++|+||+|||+..|.+++..++++|+ +++.-.+....|++++++|.+++.. +.++|++|+|.++.+.
T Consensus 55 ~~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 55 GVDGL-LANPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 22322 223579999999999999999999999997 3444333235789999999877653 4689999999999999
Q ss_pred hHHHHHHHhcCceEEEEEEEeeccc
Q 024565 161 PLAKVIHDKFGIVEGLMTTVHSITA 185 (265)
Q Consensus 161 ~~L~pL~~~~~i~~~~v~~v~~~sg 185 (265)
.+|+++++...+ ..+.++++.|+
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999987655 23467888885
No 46
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.38 E-value=1.5e-12 Score=107.55 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=74.3
Q ss_pred HHHHHHh-cCceEEEEEEEeeccccccc------------cCCCCCCcccCCccCCCceeecCC----ChhhHHH-----
Q 024565 163 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSST----GAAKAVG----- 220 (265)
Q Consensus 163 L~pL~~~-~~i~~~~v~~v~~~sg~~~~------------~d~~~~~~~~~~~~~a~n~~p~~~----~~~~~~~----- 220 (265)
|+||+++ ++++++.+++++++||+++. ..+.......+..++++|++||.. .|.++..
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899998 88999999999999998663 111111233556789999999994 3433322
Q ss_pred -----hhccCCCCceeEEEEEeeeCceEEEEEEEEec-CCCCHHHHHHHh
Q 024565 221 -----KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLE-KDASYDEIKAAI 264 (265)
Q Consensus 221 -----~~l~e~~~~v~~~~~~vP~~~G~~~~~~v~~~-~~~~~e~v~~~~ 264 (265)
+++.... +++++|++||++|||++++|++++ ++.+.+++.++|
T Consensus 81 ~~~~~~~l~~~~-~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~ 129 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAF 129 (184)
T ss_dssp HHHHHHHCTETT-EEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHH
T ss_pred hccccceeeccc-cccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHH
Confidence 2222223 799999999999999999999996 777777777765
No 47
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.96 E-value=3.7e-09 Score=81.35 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=71.9
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
|++|+|+ |++|..+++.|.++|+++++++++...+ .+... ..+++.. .. .+ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~------~~~~~~~-----------------~~-~~--~ 54 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS------EAGPHLK-----------------GE-VV--L 54 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH------HHCcccc-----------------cc-cc--c
Confidence 6899998 9999999999999999999999664322 22111 1111110 00 01 1
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHH---HHHhCCCCeEEE--cCC---CCCCceEEeeecccccc
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVII--SAP---SKDAPMFVVGVNEHEYK 143 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~---~~~~~G~~~vvi--s~~---~~~~~~~v~~vn~~~~~ 143 (265)
+.+..+|...++|+||.|+|...+.+.+. ..++.|+ +++ |+. .++.+..++++|+++++
T Consensus 55 ~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 55 ELEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred ccccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 12212233357999999999998888544 3346776 555 544 34578888999987664
No 48
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.92 E-value=2.9e-09 Score=94.59 Aligned_cols=90 Identities=27% Similarity=0.374 Sum_probs=66.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+++||||+|+|.+|+.+++.+.++|++||+++.++.. ..... . . +.++.
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~-~~~~~------~------------~-----------~~v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG-AETLD------T------------E-----------TPVYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc-HHHHh------h------------c-----------CCccc
Confidence 78899999999999999999999999999999998752 11110 0 0 01111
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis 124 (265)
..+.+++ ..++|+|+.|+|+..+.+.+..++++|+ ++|.|
T Consensus 51 ~~d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 51 VADDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred cCCHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 1222222 2579999999999999999999999997 34444
No 49
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.83 E-value=1.2e-08 Score=88.97 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=65.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
|+||||+|+|.+|+.+++.+.++|++++++++.+.......... + + ..+.++ .
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~---------~---------~-------~~~~~~--~ 53 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRA---------L---------G-------EAVRVV--S 53 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhh---------h---------c-------cCCeee--C
Confidence 47999999999999999999999999999998653222111100 0 0 012233 3
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
|.+++ ..++|+|++|+|+..+.+++.+++++|+. +++
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi 90 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAV 90 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 44444 25699999999999999999999999974 444
No 50
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.75 E-value=1.5e-08 Score=77.27 Aligned_cols=89 Identities=30% Similarity=0.471 Sum_probs=66.7
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
+||||+|+|.+|+..++.+.++ |++++++|+++.... ..++ ...+ ++.+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~------------------~~~~---------~~~~-- 51 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA------------------EKYG---------IPVY-- 51 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH------------------HHTT---------SEEE--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH------------------HHhc---------ccch--
Confidence 6999999999999999999887 899999999985321 1111 0111 1233
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.|.+++ ++..++|+|+.|||...+.+.+..++++|+ ++++
T Consensus 52 ~~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 52 TDLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SSHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEE
T ss_pred hHHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEE
Confidence 345555 334579999999999999999999999997 5555
No 51
>PRK11579 putative oxidoreductase; Provisional
Probab=98.74 E-value=3e-08 Score=89.77 Aligned_cols=91 Identities=26% Similarity=0.453 Sum_probs=67.1
Q ss_pred CC-ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~-~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
|+ ++||||+|+|.+|+. +++.+...|++++++|+++. ....+ . .+. + .+.
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~--------~---------~~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD--ATKVK------A---DWP--------T---------VTV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC--HHHHH------h---hCC--------C---------Cce
Confidence 54 589999999999984 78888888999999999874 22211 0 010 0 122
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+ .|++++ .++.++|+|+.|||+..|.+.+..++++|+ +|++
T Consensus 53 ~--~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~ 93 (346)
T PRK11579 53 V--SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVV 93 (346)
T ss_pred e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEE
Confidence 2 345555 344679999999999999999999999994 6666
No 52
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.73 E-value=3.4e-08 Score=86.48 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
|+++||||+|+|++|+.+++.|.+ .+++++++++++..+. +..+ . ..+ . ...
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a------~------------~~g------~--~~~ 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFI------W------------GLR------R--PPP 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHH------H------------hcC------C--Ccc
Confidence 667999999999999999999988 4899999999874221 1111 0 000 0 011
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+ .+++++. .++|+|++|+|+..+.++...++++|+ ++++
T Consensus 58 ~--~~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 58 V--VPLDQLA---THADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred c--CCHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 1 3455552 468999999999999999999999996 3443
No 53
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.61 E-value=8.1e-08 Score=86.33 Aligned_cols=93 Identities=24% Similarity=0.314 Sum_probs=68.1
Q ss_pred CCccEEEEEccC-hhHHHHHHHHHcCCC-eEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565 1 MGKVKIGINGFG-RIGRLVARVILQRDD-VELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~i~vgI~G~G-~~G~~l~~~L~~~p~-~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 77 (265)
|+++||||+|+| .+++.++..+.+.++ +++++++++.... ..++. .| + + . .
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~---------~~---------~--~-----~-~ 54 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE---------EF---------G--I-----A-K 54 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH---------Hc---------C--C-----C-c
Confidence 788999999996 666779999999987 7999999985332 22110 00 1 0 0 1
Q ss_pred EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+ .|.+++ +++.++|+|+.|||+..|.+.+.+++++|+ +|++
T Consensus 55 ~~--~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~ 96 (342)
T COG0673 55 AY--TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLC 96 (342)
T ss_pred cc--CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEE
Confidence 22 345555 344669999999999999999999999995 6666
No 54
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.59 E-value=1.1e-07 Score=82.97 Aligned_cols=96 Identities=22% Similarity=0.356 Sum_probs=65.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||+|+|+ |+||+.+++.+.++|++++++++++..... .. .+ .+.+. + . ....+.++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~-~~----~~--~~~~~--------~--~--~~~gv~~~-- 59 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL-QG----TD--AGELA--------G--I--GKVGVPVT-- 59 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-cC----CC--HHHhc--------C--c--CcCCceee--
Confidence 389999996 999999999999999999999998532110 00 00 00000 0 0 00012333
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.|++++ ..++|+|++||++..+.+.+..++++|+. +|+
T Consensus 60 ~d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 60 DDLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CCHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 345554 24689999999999999999999999974 555
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.53 E-value=1.4e-07 Score=72.81 Aligned_cols=89 Identities=29% Similarity=0.359 Sum_probs=60.1
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC---hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT---TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
|||+|+|+ |+||+.+++.+.++++++|+++.++..+ ++.+. .+. + .....++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g----------~~~--------~----~~~~~~~v~ 58 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVG----------ELA--------G----IGPLGVPVT 58 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCH----------HHC--------T----SST-SSBEB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhh----------hhh--------C----cCCcccccc
Confidence 69999999 9999999999999999999999988642 11111 010 0 000112232
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~ 119 (265)
.+.+++ ...+|+++|+|-+....+.++.+++.|+.
T Consensus 59 --~~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 59 --DDLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp --S-HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred --hhHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 344444 14599999999888888999999999974
No 56
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.53 E-value=2.3e-07 Score=80.04 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=65.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
++||||+|+|.+|+.+++.|... +.+++++|+++..+. ... +. + . .+++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~--~~~----------~~--------~-------~-~~~~- 52 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL--PPA----------LA--------G-------R-VALL- 52 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH--HHH----------hh--------c-------c-Cccc-
Confidence 68999999999999999998864 459999998874211 000 00 0 0 1222
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis 124 (265)
.+++++- ...+|+|++|.++...+++.++.|++|+..+++|
T Consensus 53 -~~l~~ll--~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 -DGLPGLL--AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred -CCHHHHh--hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3455531 2468999999999999999999999999877765
No 57
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.51 E-value=3.4e-07 Score=79.56 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=64.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||+|+|+ |+||+.+++.+.++|++++++++++..+.. . .. ..+ .+..+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--~------~~-~~~------------------~i~~~-- 51 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--V------GQ-GAL------------------GVAIT-- 51 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--c------cc-CCC------------------Ccccc--
Confidence 489999999 999999999999999999999998742211 0 00 000 11122
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.|.+++ + .++|+|++||++..+.+.+..++++|+. +|+
T Consensus 52 ~dl~~l-l--~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 52 DDLEAV-L--ADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CCHHHh-c--cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 344444 1 3689999999999999999999999974 555
No 58
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.49 E-value=3.4e-07 Score=79.96 Aligned_cols=90 Identities=28% Similarity=0.419 Sum_probs=64.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+||||+|+|.+|+.+++.+.+.+ ++++++++++..+. +.++ . ..+ ...+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a------~------------~~~---------~~~~- 52 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLA------S------------KTG---------AKAC- 52 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHH------H------------hcC---------CeeE-
Confidence 379999999999999999998874 79999999874321 1111 0 001 1122
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis 124 (265)
.+.+++. .++|+|++|+++..+.++.+.++++|+..+++|
T Consensus 53 -~~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 53 -LSIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred -CCHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence 3455552 469999999999999999999999997433333
No 59
>PRK10206 putative oxidoreductase; Provisional
Probab=98.49 E-value=2.1e-07 Score=84.34 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=63.7
Q ss_pred ccEEEEEccChhHH-HHHHHHHc-CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~-~l~~~L~~-~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+||||+|+|.+++ .+++.+.+ .+++++++|+|+..+....+ . .|. + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~------~---~~~--------~---------~~~~- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------P---IYS--------H---------IHFT- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH------H---hcC--------C---------Cccc-
Confidence 48999999998764 46776655 47899999999843221111 0 010 0 1222
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.|.+++ ++..++|+|+.|||+..|.+++.+++++| |+|++
T Consensus 54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~ 93 (344)
T PRK10206 54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLV 93 (344)
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEE
Confidence 345555 44468999999999999999999999999 46776
No 60
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.45 E-value=1.2e-06 Score=75.06 Aligned_cols=98 Identities=26% Similarity=0.309 Sum_probs=66.4
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
+||||+|+|+ |+||+++++++.+.|+++|++..++..+... .+..+.+. | .+...+++.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~-------g~d~ge~~--------g----~~~~gv~v~- 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSL-------GSDAGELA--------G----LGLLGVPVT- 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccc-------ccchhhhc--------c----ccccCceee-
Confidence 3699999999 9999999999999999999999887533210 00000110 0 000112332
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.++... ..++|+++|-|-+..+.++++.+++.|.+.|+-
T Consensus 61 -~~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIG 99 (266)
T COG0289 61 -DDLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIG 99 (266)
T ss_pred -cchhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEE
Confidence 222222 367999999999999999999999999754443
No 61
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=4.4e-07 Score=74.59 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=91.5
Q ss_pred CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc--ccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEE
Q 024565 2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP--FITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 77 (265)
++.||+|+|.|.+|..|+-.+++| .++|..+.+.. ..++ .+.+. +-...+ ..|..-
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraar-lgv~tt------------------~egv~~- 62 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAAR-LGVATT------------------HEGVIG- 62 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHh-cCCcch------------------hhHHHH-
Confidence 367999999999999999988888 56787766643 2222 11111 000000 011000
Q ss_pred EEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCchh
Q 024565 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCTTN 157 (265)
Q Consensus 78 ~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~~t 157 (265)
.+ .-| ++ +++|+||++|..+.+.+.+.++.++|++-+.++ +..-.|-++|-+|.++-.+ +..|+.-.|..+
T Consensus 63 ll--~~p-~~----~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~~-a~nvnmvtcggq 133 (310)
T COG4569 63 LL--NMP-EF----ADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHVD-ALNVNMVTCGGQ 133 (310)
T ss_pred HH--hCC-CC----CCcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhcC-CCCcceEeecCc
Confidence 00 012 22 578999999999999999999999999655552 1122577888899655442 667888888888
Q ss_pred hhHhHHHHHHHh
Q 024565 158 CLAPLAKVIHDK 169 (265)
Q Consensus 158 a~~~~L~pL~~~ 169 (265)
+.++.++...+-
T Consensus 134 atipiv~avsrv 145 (310)
T COG4569 134 ATIPIVAAVSRV 145 (310)
T ss_pred ccchhhhhhhhh
Confidence 888888776553
No 62
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=73.04 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=65.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
++|||+|+|.||+.+++++.+.+ ++|+++++|+..+- ..+... +.++. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~------------------------~~~~~--~--- 51 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS------------------------VGRRC--V--- 51 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh------------------------cCCCc--c---
Confidence 47999999999999999999773 59999999985331 111100 01111 1
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis 124 (265)
.+.+++ ..++|++++|.++...++++++++++|+..+|+|
T Consensus 52 s~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S 91 (255)
T COG1712 52 SDIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMS 91 (255)
T ss_pred ccHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEe
Confidence 234444 2679999999999999999999999999877764
No 63
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.34 E-value=1e-06 Score=82.00 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=63.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 71 (265)
|+++||||+|+|.+|+.+++.|.+|+ ++++++|+++...-.. . +. +
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------~----~~-----------~-- 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------G----VD-----------L-- 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------C----CC-----------C--
Confidence 77899999999999999999997764 6899999986421100 0 00 0
Q ss_pred CCEEEEEEecCCCCCCCcccccccEEEEecCC-cccHHhHHHHHhCCCCeEEE
Q 024565 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~-~~~~~~~~~~~~~G~~~vvi 123 (265)
.+ ...+ .|++++ ..+.++|+|++|++. ..+.+++.+++++|+ +||.
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVt 102 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVT 102 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEE
Confidence 00 1122 344444 334679999999876 456788999999995 5554
No 64
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.30 E-value=2.1e-06 Score=77.64 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=60.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccCh-h----hhhhheeecccCCcccccceeeeCCce
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITT-D----YMTYMFKYDSVHGQWKHHELKVKDDKT 68 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (265)
++||+|+|+|.+|+.+++.|.+++ ++++++|+++.... + ....+..+.. ..+ .
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~------------~~~-~ 68 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE------------ETG-K 68 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh------------ccC-C
Confidence 699999999999999999998764 79999999863211 0 0000000000 000 0
Q ss_pred EEECCEEEE-EEecCCCCCCCcccccccEEEEecCCccc-----HHhHHHHHhCCCCeEEE
Q 024565 69 LLFGEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVII 123 (265)
Q Consensus 69 l~~~g~~~~-~~~~~~~~~~~~~~~~~DvV~~at~~~~~-----~~~~~~~~~~G~~~vvi 123 (265)
+. ... .....+++++ +.+.++|+|++|||+..+ .+++..++++|+ +||+
T Consensus 69 ~~----~~~~~~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk-hVVt 123 (341)
T PRK06270 69 LA----DYPEGGGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK-HVVT 123 (341)
T ss_pred cc----cCccccccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC-EEEc
Confidence 00 000 0000233333 233578999999997554 678899999996 4444
No 65
>PLN02775 Probable dihydrodipicolinate reductase
Probab=98.01 E-value=2.4e-05 Score=68.41 Aligned_cols=95 Identities=23% Similarity=0.191 Sum_probs=65.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
.+||.|+|+ |+||+++++++.+ ++++|++..+....+.... +.+.|..++++..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~~ 65 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVGP 65 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeecC
Confidence 589999999 9999999999999 9999999888643332110 1112223444422
Q ss_pred CCCCCCC--ccccccc-EEEEecCCcccHHhHHHHHhCCCCeEE
Q 024565 82 RNPEEIP--WAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVI 122 (265)
Q Consensus 82 ~~~~~~~--~~~~~~D-vV~~at~~~~~~~~~~~~~~~G~~~vv 122 (265)
.|.++.- .+...+| +++|-|-+....+.++.+++.|+..|+
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~Vv 109 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVM 109 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 3333320 0112588 899999999999999999999985333
No 66
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.01 E-value=1.3e-05 Score=72.47 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=61.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
.++||||+|+ .+|+.+++.+.+.| ++++++|+|+..+ .+.++.- | | ++.+
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---------~---------g---------i~~y 53 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---------L---------G---------VPLY 53 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---------h---------C---------CCcc
Confidence 3689999999 56999999999988 8999999998533 2222210 0 1 1222
Q ss_pred ecCCCCCCCcccccccEEEE--ecCCcccHHhHHHHHhCCCCeEEE
Q 024565 80 GVRNPEEIPWAETGAEYVVE--STGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~--at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.+++ ..+.++|+|.. ++|++.+.+.+.+++++|+ +|++
T Consensus 54 --~~~eel-l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~ 95 (343)
T TIGR01761 54 --CEVEEL-PDDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQ 95 (343)
T ss_pred --CCHHHH-hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEE
Confidence 345555 22234555555 3467899999999999995 6666
No 67
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.78 E-value=2.1e-05 Score=59.90 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=50.9
Q ss_pred ccChhHHHHHHHHHcCC---CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCC
Q 024565 10 GFGRIGRLVARVILQRD---DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (265)
Q Consensus 10 G~G~~G~~l~~~L~~~p---~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 85 (265)
|+|.+|+.++++|.+++ ++++++|+++. .. .... .. . ..+ .... .+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-----~~---~--------~~~---------~~~~--~~~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-----AA---S--------FPD---------EAFT--TDLE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-----HH---H--------HTH---------SCEE--SSHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-----hh---h--------ccc---------cccc--CCHH
Confidence 78999999999999886 79999999875 21 1000 00 0 000 0011 2333
Q ss_pred CCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 86 ~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
++ ....++|+|+||++.....++.+.++++|+
T Consensus 53 ~~-~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~ 84 (117)
T PF03447_consen 53 EL-IDDPDIDVVVECTSSEAVAEYYEKALERGK 84 (117)
T ss_dssp HH-HTHTT-SEEEE-SSCHHHHHHHHHHHHTTC
T ss_pred HH-hcCcCCCEEEECCCchHHHHHHHHHHHCCC
Confidence 32 111369999999999999999999999997
No 68
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.75 E-value=3.5e-05 Score=59.66 Aligned_cols=81 Identities=25% Similarity=0.277 Sum_probs=51.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
.+||+|||+|++|..|.++|.+.. .++.++.+++... ++.+.. +.+ ..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~------------------------~~~--~~~--- 59 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF------------------------IGA--GAI--- 59 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--------------------------TT--------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc------------------------ccc--ccc---
Confidence 589999999999999999999875 7899998875332 222110 001 112
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG 116 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~ 116 (265)
.+++++ ..+.|++|.|+|...-.+.++.+.+.
T Consensus 60 ~~~~~~---~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 60 LDLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence 234333 25799999999998888888777665
No 69
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.73 E-value=0.00011 Score=62.03 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=61.9
Q ss_pred ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
+.||+|+|+|.+|+.+++.+. ..++++++++.|.. ..... . .+.| +++...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d--~~~~~----------~--------------~i~g--~~v~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD--PEKIG----------T--------------KIGG--IPVYHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC--hhhcC----------C--------------EeCC--eEEcCH
Confidence 579999999999999998643 34679999999863 21100 0 0011 112111
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.+++ ....++|.|+.|+|...+.+....++++|++.++.
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence 223333 22346999999999999888899999999876665
No 70
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.67 E-value=9e-05 Score=66.91 Aligned_cols=109 Identities=31% Similarity=0.381 Sum_probs=61.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEE-EC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL-FG 72 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 72 (265)
++||+|+|+|.+|+.++++|.++. ++++++|+++....-. ..-+ | ...+. ......+ .+. +.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~-~~Gi--d--~~~l~--~~~~~~~-~~~~~~ 73 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWL-PEDI--D--LREAK--EVKENFG-KLSNWG 73 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccC-CCCC--C--hHHHH--HhhhccC-chhhcc
Confidence 699999999999999999987731 4889999886422100 0000 0 00000 0000001 000 00
Q ss_pred CEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
..... ...+++++ +...++|+|++|++.....++..++++.|+ ++|.
T Consensus 74 -~~~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~-~VVt 120 (336)
T PRK08374 74 -NDYEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK-SVVT 120 (336)
T ss_pred -ccccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC-cEEE
Confidence 00000 00123333 323579999999999888899999999997 3443
No 71
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.00013 Score=64.81 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=68.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
.+|.||+|+|.+++.+++.|..-| +.++++|++++.+. ..+|.- | +++ ..+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~------~--------------~~~----~~k~y 61 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQR------H--------------NIP----NPKAY 61 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHh------c--------------CCC----CCccc
Confidence 589999999999999999999888 89999999985331 112100 0 011 12233
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.|++ .++..+|+|...+|+-.|.+++..+++.|+ +|++
T Consensus 62 --~syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~ 101 (351)
T KOG2741|consen 62 --GSYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLC 101 (351)
T ss_pred --cCHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEe
Confidence 234555 345789999999999999999999999994 5666
No 72
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.62 E-value=0.00012 Score=66.26 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=29.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~ 37 (265)
+++|+|+|+|.+|+.++++|.++. ++++++|+++.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~ 45 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRN 45 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecc
Confidence 599999999999999999997542 47889998753
No 73
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.60 E-value=0.00026 Score=63.61 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=29.8
Q ss_pred cEEEEEccChhHHHHHHHHHcC-------CCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-------p~~el~~v~~~~ 37 (265)
|||+|+|+|.+|+.++++|.++ .++++++|+++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 4899999999999999999874 468999998864
No 74
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00025 Score=63.31 Aligned_cols=99 Identities=24% Similarity=0.388 Sum_probs=60.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccccChhhhhhheeecccC-CcccccceeeeCCceEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLL 70 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 70 (265)
|+++||+|+|+|.+|+.++++|.++. ++++++|.++.....+ .+|-.. ..|. .++
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-----~~~~~~~~~~~------~~~---- 65 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-----DLDLLNAEVWT------TDG---- 65 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-----cccccchhhhe------ecc----
Confidence 78899999999999999999998752 5788888877422110 000000 0000 000
Q ss_pred ECCEEEEEEecCCCCCCCcccccccEEEEecCCcc--cH--HhHHHHHhCCCCeEEEcCC
Q 024565 71 FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT--DK--DKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~--~~--~~~~~~~~~G~~~vvis~~ 126 (265)
... .+ .++.+ ..+.|+|+++++... +. ++..++++.|. .|+++.
T Consensus 66 ------~~~--~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN 113 (333)
T COG0460 66 ------ALS--LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN 113 (333)
T ss_pred ------ccc--cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence 000 00 12212 367899999998732 33 67889999996 666554
No 75
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00014 Score=64.67 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=66.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeC--Cc---eEEECCEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD--DK---TLLFGEKPVT 77 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~l~~~g~~~~ 77 (265)
.+|||+||+|.+|+-++.....-|++++++|.+++.+..+.+| |..+..- ..+.+.. .+ .+ -.|+ +.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~--~~~~e~~~~s~~a~Ai-~aGK-i~ 88 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPK--IEAVEADDASKMADAI-EAGK-IA 88 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCc--ccccccchhhHHHHHH-hcCc-EE
Confidence 6899999999999999999998899999999998755444332 2111110 0000000 00 00 0121 22
Q ss_pred EEecCCCCCCCcccccccEEEEecCCc-ccHHhHHHHHhCCCCeEEE
Q 024565 78 VFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 78 ~~~~~~~~~~~~~~~~~DvV~~at~~~-~~~~~~~~~~~~G~~~vvi 123 (265)
+. .|.+.+ .....+|+|+++|+.- ...+....++..| |++|.
T Consensus 89 vT--~D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~-KHlVM 131 (438)
T COG4091 89 VT--DDAELI-IANDLIDVIIDATGVPEVGAKIALEAILHG-KHLVM 131 (438)
T ss_pred Ee--cchhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcC-CeEEE
Confidence 22 344444 4456799999999974 4556666777777 45554
No 76
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.58 E-value=0.00014 Score=53.45 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=62.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
+.|+.|+|+|..|+.++....+..+++++++.|.. .+.. |+ .++| ++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--~~~~----------------------G~--~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--PEKI----------------------GK--EIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--TTTT----------------------TS--EETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--CCcc----------------------Cc--EECC--EEeec--
Confidence 57999999999999998777777789999998863 2111 10 1122 55652
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+.+++.-. -++|+.+.|.|.....+.+.+++++|+|.++.
T Consensus 53 ~~~~l~~~-~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 53 SMDELEEF-IEIDIAIITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp SHHHHHHH-CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred cHHHhhhh-hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 23333100 13899999999999999999999999987764
No 77
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.56 E-value=0.00015 Score=73.80 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=64.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeE------------EEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTL 69 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~e------------l~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (265)
|.||+|+|+|++|+.+++.|.++|+++ +++|+|.... .+.++. . +++.. .+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-----~-~~~~~----------~v 632 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-----G-IENAE----------AV 632 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-----h-cCCCc----------eE
Confidence 579999999999999999999998877 7888887422 221110 0 00000 01
Q ss_pred EECCEEEEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 70 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 70 ~~~g~~~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.+ .|.+++.-...++|+|+.|+|...+.+.+..++++|+ +++.
T Consensus 633 -----~lDv---~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk-Hvv~ 677 (1042)
T PLN02819 633 -----QLDV---SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK-HLVT 677 (1042)
T ss_pred -----Eeec---CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC-CEEE
Confidence 1111 2333331001469999999999999999999999996 4554
No 78
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.46 E-value=0.00033 Score=61.09 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=60.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
+||.|+|+ |.||+++++++.+ ++++|++. .+......... . +.|..+++..+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~---------------~----------~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEA---------------E----------VAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchh---------------h----------hcccceeeecc
Confidence 58999999 9999999999888 89999987 44322221111 0 11112333211
Q ss_pred ----CCCCCCCccccccc-EEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 ----RNPEEIPWAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ----~~~~~~~~~~~~~D-vV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+++++ + ...+| +++|-|-+....+.++.+++.|+. +|+
T Consensus 55 ~~~~~~l~~~-~-~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~-~Vi 98 (275)
T TIGR02130 55 SEREARIGEV-F-AKYPELICIDYTHPSAVNDNAAFYGKHGIP-FVM 98 (275)
T ss_pred ccccccHHHH-H-hhcCCEEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 223333 1 12378 999999999999999999999985 444
No 79
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.40 E-value=0.00033 Score=57.10 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=63.5
Q ss_pred CccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 2 GKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
++.++.|+|+|.+|+.++.--.. +-++.++++.|.. .+.+ |... . ++++..
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~--~~~V----------G~~~--------------~--~v~V~~ 134 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVD--PDKV----------GTKI--------------G--DVPVYD 134 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCC--HHHh----------Cccc--------------C--Ceeeec
Confidence 36899999999999998764433 4569999998863 2211 1110 1 134433
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEE
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vv 122 (265)
-.+.+++ .+..++|+++.|.|...+.+.+..+.++|+|.+.
T Consensus 135 ~d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 135 LDDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred hHHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence 2334433 2335899999999999999999999999998665
No 80
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.36 E-value=0.00038 Score=59.72 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
|..+||+|+|+|.+|..+++.|.++. +++.+.+.++. +.++...+. . ..+ +..
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~---~------------~~~---------~~~ 56 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS-NVEKLDQLQ---A------------RYN---------VST 56 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC-CHHHHHHHH---H------------HcC---------cEE
Confidence 33689999999999999999987663 35423333332 111111000 0 001 112
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHH
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~ 114 (265)
+ .+.+++ ..++|+||.|+|...+.+..+.+.
T Consensus 57 ~--~~~~~~---~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 57 T--TDWKQH---VTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred e--CChHHH---HhcCCEEEEecCHHHHHHHHHHHH
Confidence 1 233332 156899999999998888776654
No 81
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.29 E-value=0.00078 Score=54.68 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=30.4
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+++.+-|+|+ |..|+.+++.+++.|.|.-+.+..+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 67889999999 9999999999999999865444433
No 82
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00093 Score=61.12 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=72.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc-ChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
|+||-|+|+|.+|+.+++.|+++.+.++. |+|++. ..+++. ++..++.. .+ .+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~-----~~~~~~v~----------~~-----~vD~--- 56 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIA-----ELIGGKVE----------AL-----QVDA--- 56 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHH-----hhccccce----------eE-----Eecc---
Confidence 48999999999999999999999776654 555542 233332 11111110 11 1111
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCCeEEcCCCc
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIVSNASCT 155 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~~Va~p~C~ 155 (265)
.+.+.+.=.-.+.|+|+.|.|...+....+.+++.|+.-+.+|...+. ...++ +..+ ++.+.+.++|.
T Consensus 57 ~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~-~~a~-~Agit~v~~~G 124 (389)
T COG1748 57 ADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP----PWKLD-EEAK-KAGITAVLGCG 124 (389)
T ss_pred cChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch----hhhhh-HHHH-HcCeEEEcccC
Confidence 222111000145699999999999999999999999854444433211 12222 2333 35677777774
No 83
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.15 E-value=0.0006 Score=49.65 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=51.7
Q ss_pred EEEEEccChhHHHHHHHHHcCC--CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
||||+|+|.+|..+++.|.++. ..++..+++++ .+...++. . ..+ ..+.. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~------------~~~---------~~~~~-~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---K------------EYG---------VQATA-D 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---H------------HCT---------TEEES-E
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---H------------hhc---------ccccc-C
Confidence 7999999999999999999884 25666565653 22222111 0 000 01111 0
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHH--HhCCCCeEEEc
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAH--LKGGAKKVIIS 124 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~--~~~G~~~vvis 124 (265)
+..++ ....|+||.|.+.....+..... ...+. .++|
T Consensus 54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~--~vis 92 (96)
T PF03807_consen 54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGK--LVIS 92 (96)
T ss_dssp EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEE
T ss_pred ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEE
Confidence 12222 14689999999998888877665 45564 6654
No 84
>PLN02700 homoserine dehydrogenase family protein
Probab=97.12 E-value=0.0016 Score=59.36 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=31.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPF 37 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~ 37 (265)
|++++|+|+|+|.+|+.++++|.++. ++++++|++..
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~ 45 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSK 45 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCC
Confidence 88899999999999999999987542 36788888753
No 85
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.07 E-value=0.0011 Score=57.61 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=49.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+||+|+|+|.+|..+++.|.+.. ..+.+.+.+++.. .+.+. . ..| +.+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~------~------------~~g---------~~~~- 53 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALA------E------------EYG---------VRAA- 53 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHH------H------------hcC---------Ceec-
Confidence 589999999999999999988653 1233455555321 11111 0 001 1111
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~ 115 (265)
.+.++. ..++|+||.|++.....+..+.+..
T Consensus 54 -~~~~~~---~~~advVil~v~~~~~~~v~~~l~~ 84 (267)
T PRK11880 54 -TDNQEA---AQEADVVVLAVKPQVMEEVLSELKG 84 (267)
T ss_pred -CChHHH---HhcCCEEEEEcCHHHHHHHHHHHHh
Confidence 223332 1468999999999887777766554
No 86
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.99 E-value=0.0023 Score=58.46 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=64.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--ECCEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEKP 75 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~g~~ 75 (265)
|.||+|+|+ |.||+..++.+.++| .+++++++... +.+.+..+. ....+.+- ...+. +.+. ..+..
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAG 73 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCC
Confidence 379999998 999999999999987 59999998543 333222111 11111111 00000 0000 00101
Q ss_pred EEEEec-CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 76 VTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+.++.. ....++ ....++|+|+.+.+.....+..-.++++|+ ++.+
T Consensus 74 ~~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 74 IEVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred ceEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 122221 112222 122579999999999888888889999996 3444
No 87
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.97 E-value=0.0017 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
|+.+||+|+|+|.+|..+++.|.+..
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 77789999999999999999998764
No 88
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.78 E-value=0.0026 Score=51.69 Aligned_cols=90 Identities=27% Similarity=0.378 Sum_probs=55.5
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe--cC
Q 024565 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VR 82 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~ 82 (265)
|.|.|+ |++|+.+++.|.+++ .++.+++........ . .+ +.++. ..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~----------~-----------~~---------~~~~~~d~~ 49 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED----------S-----------PG---------VEIIQGDLF 49 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH----------C-----------TT---------EEEEESCTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc----------c-----------cc---------cccceeeeh
Confidence 689999 999999999999997 899988865322210 0 01 11111 11
Q ss_pred CCCCCCcccccccEEEEecCCcc-----cHHhHHHHHhCCCCeEEE-cCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFT-----DKDKAAAHLKGGAKKVII-SAP 126 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~-----~~~~~~~~~~~G~~~vvi-s~~ 126 (265)
|++.+.-...++|+||.|.+... .+...+.+.+.|++++++ |+.
T Consensus 50 d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 50 DPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp CHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred hhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 22211101147999999998432 333445566789887775 444
No 89
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.75 E-value=0.0016 Score=52.56 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|+|||++|+|.+|..+++.|.++. +++. +++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~-~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-YEVT-VYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-TEEE-EEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-CeEE-eeccc
Confidence 489999999999999999999874 6654 45553
No 90
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.00095 Score=56.65 Aligned_cols=96 Identities=22% Similarity=0.206 Sum_probs=57.4
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 84 (265)
|.|.|+ |.+|+.+++.|.. +++++.+++....+. ... -+ . ..|-.+ + .....|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~-~~~-~l---------~------~~g~~v------v-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSD-RAQ-QL---------Q------ALGAEV------V-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHH-HHH-HH---------H------HTTTEE------E-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchh-hhh-hh---------h------cccceE------e-ecccCCH
Confidence 789999 9999999999999 679999988754211 110 00 0 011001 0 0011222
Q ss_pred CCCCcccccccEEEEecCCc------ccHHhHHHHHhCCCCeEEEcCC
Q 024565 85 EEIPWAETGAEYVVESTGVF------TDKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 85 ~~~~~~~~~~DvV~~at~~~------~~~~~~~~~~~~G~~~vvis~~ 126 (265)
+.+.=...++|.||.+++.. .....+.++.++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 22211126899999999943 3445677888899998887543
No 91
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.59 E-value=0.0039 Score=57.22 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=52.8
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCCC
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 85 (265)
|.|+|+|++|+.+++.|.+++.++-+.+++++.. ....+. +.. .+..+ ........|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~--~~~~~~--~~~------------~~~~~-----~~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE--KAERLA--EKL------------LGDRV-----EAVQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH--HHHHHH--T--------------TTTTE-----EEEE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH--HHHHHH--hhc------------cccce-----eEEEEecCCHH
Confidence 6899999999999999999988855666666422 211111 000 00001 11111112322
Q ss_pred CCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 86 ~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
++.=...+.|+|+.|+|.......++.+++.|+
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~ 92 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV 92 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC
Confidence 221012578999999999988899999999998
No 92
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.56 E-value=0.005 Score=54.07 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||+|+|+|.+|..+++.|.++. .++.++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence 37999999999999999998774 5655443
No 93
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.55 E-value=0.0059 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
|+.+||+|+|+|.+|..+++.|.++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC
Confidence 77789999999999999999998774
No 94
>PLN02256 arogenate dehydrogenase
Probab=96.48 E-value=0.0048 Score=54.97 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=27.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|.++||+|+|+|.+|+.+++.|.+.+ .++.++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d 66 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATS 66 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEE
Confidence 35689999999999999999998764 6766554
No 95
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.46 E-value=0.01 Score=59.65 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF 37 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p---------~~el~~v~~~~ 37 (265)
|++++|+|+|+|.+|+.++++|.++. ++++++|+++.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~ 501 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR 501 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC
Confidence 35689999999999999999997642 47889998753
No 96
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.46 E-value=0.0074 Score=51.48 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=31.3
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+.+||+|.|+|.+|+.+++.|.+. ++++++|+|..
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~~ 64 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDSD 64 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 468999999999999999999877 69999999863
No 97
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.42 E-value=0.016 Score=44.10 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=53.3
Q ss_pred cEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEE
Q 024565 4 VKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 i~vgI~G~----G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 79 (265)
.+|+|+|+ +..|..+++.|.++ ++++..|+-...+ +.| .+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~~~-------------------------------i~G--~~~y 46 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKGGE-------------------------------ILG--IKCY 46 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTCSE-------------------------------ETT--EE-B
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCceE-------------------------------ECc--EEee
Confidence 37999995 77899999999995 4787777643211 112 2233
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.++.+ ..+|+++.|+|.....+.++++.+.|++.+++
T Consensus 47 --~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 47 --PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp --SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred --ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 2333332 57899999999999999999999999998887
No 98
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.42 E-value=0.0096 Score=52.18 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCC--eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~--~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 78 (265)
|+ +||+++|+|.||..+++.|.+... .+-+.+.+++ ......+. + ..| +..
T Consensus 1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~--~~~~~~l~--~-------------~~g---------~~~ 53 (272)
T PRK12491 1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN--VSNLKNAS--D-------------KYG---------ITI 53 (272)
T ss_pred CC-CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC--HHHHHHHH--H-------------hcC---------cEE
Confidence 54 689999999999999999987642 2223455543 21111110 0 001 112
Q ss_pred EecCCCCCCCcccccccEEEEecCCcccHHhHHHHH---hCCCCeEEEc
Q 024565 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL---KGGAKKVIIS 124 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~---~~G~~~vvis 124 (265)
. .+.+++ ..++|+||.|++.....+..+.+. +.+. +++|
T Consensus 54 ~--~~~~e~---~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~--lvIS 95 (272)
T PRK12491 54 T--TNNNEV---ANSADILILSIKPDLYSSVINQIKDQIKNDV--IVVT 95 (272)
T ss_pred e--CCcHHH---HhhCCEEEEEeChHHHHHHHHHHHHhhcCCc--EEEE
Confidence 1 223333 146899999999877766665543 3443 6664
No 99
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.37 E-value=0.016 Score=51.54 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+||+|+|+|.+|..++..+..++-.+++ +.|.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 57999999999999999999877533543 4454
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.31 E-value=0.0095 Score=49.82 Aligned_cols=91 Identities=21% Similarity=0.142 Sum_probs=55.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
|++++|+|.|.+|..+.+.|.... .|++..+++..+. .+.+.+ .-+ ..+... .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~--~~a~a~---------------~l~-------~~i~~~--~ 53 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKA--LAAAAA---------------ALG-------PLITGG--S 53 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCCChhH--HHHHHH---------------hhc-------cccccC--C
Confidence 489999999999999999998774 6766555543221 111100 000 001111 1
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHh--CCCCeEEEcCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIISAP 126 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~--~G~~~vvis~~ 126 (265)
..+.. +..|+||.+.|-.......+.+.. .|+ +||+..
T Consensus 54 ~~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~K--IvID~t 93 (211)
T COG2085 54 NEDAA----ALADVVVLAVPFEAIPDVLAELRDALGGK--IVIDAT 93 (211)
T ss_pred hHHHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCe--EEEecC
Confidence 12222 568999999998877777766653 344 777433
No 101
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.31 E-value=0.0066 Score=52.59 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~ 36 (265)
|||||+|+|.+|..+++.|.+.. ..+.+.+.++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 38999999999999999998764 2333456655
No 102
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.31 E-value=0.013 Score=59.04 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=57.7
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECC
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE 73 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 73 (265)
+.++|+|+|+|.+|+.++++|.++. ++++++|.+.....-. ..-+ + ...|. .. ...
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~-~~g~--~--~~~~~-~~---~~~------- 527 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLD-EHGI--D--LDNWR-EE---LAE------- 527 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccC-CCCC--C--HHHHH-HH---Hhh-------
Confidence 3689999999999999999997643 4778888764322100 0000 0 00111 00 000
Q ss_pred EEEEEEecCCCCCC-Ccc---cccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565 74 KPVTVFGVRNPEEI-PWA---ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~---~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~ 126 (265)
.....+.+.+ ++- ....|+|+|||+..........++++|+ .|+++.
T Consensus 528 ----~~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN 578 (819)
T PRK09436 528 ----AGEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN 578 (819)
T ss_pred ----ccCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence 0000000000 000 0135899999998766777789999998 666544
No 103
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.31 E-value=0.012 Score=52.50 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||.|.|+ |++|+.+++.|.++. .++.++...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRN 33 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcC
Confidence 48999999 999999999999874 788777643
No 104
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.29 E-value=0.023 Score=46.63 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||||+|+ |.+|.+++.-+..+. -|+++|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeC
Confidence 58999999 999999999888774 899999864
No 105
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.29 E-value=0.0091 Score=53.14 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=26.3
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+..||+|+|+|.+|..+++.|.+.....-+.+.+++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 347899999999999999999876432223455553
No 106
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.22 E-value=0.0075 Score=53.27 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=25.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
++||||+|+|.+|..+++.|.+. +.++. +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g~~v~-~~d~ 33 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-GYSLV-VYDR 33 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-CCeEE-EEcC
Confidence 47999999999999999999876 46665 4555
No 107
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.032 Score=49.24 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+.||||+|+|.+|..++..++.+ +++++..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~ 34 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-GVDVLVF 34 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-CCEEEEE
Confidence 35899999999999999999887 4665544
No 108
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.17 E-value=0.029 Score=50.11 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=26.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|+++||+|+|+|.+|..+...|.+.. .++..+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~ 35 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL 35 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 45689999999999999999998763 5555444
No 109
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.17 E-value=0.013 Score=51.49 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC---eEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~---~el~~v~~ 35 (265)
+||+|+|+|.+|..+++.|.+... .++..+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 789999999999999999987642 35554443
No 110
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.10 E-value=0.014 Score=52.05 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+||+|+|+|.+|..++..|.+.. .++. +.++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~-~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVT-LWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEE-EEEC
Confidence 69999999999999999998764 5653 4444
No 111
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.06 E-value=0.017 Score=52.88 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=47.6
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
.+.||+|+|. |.||+.+++.|.+..+.++.++ |+. + . + .
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~~-d-----------~--------------~-----------~-- 42 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DPA-D-----------P--------------G-----------S-- 42 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cCC-c-----------c--------------c-----------c--
Confidence 3679999999 9999999999986535665433 221 0 0 0 0
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~ 115 (265)
.++++. ..++|+||.|+|-....+..+++..
T Consensus 43 -~~~~~~---v~~aDlVilavPv~~~~~~l~~l~~ 73 (370)
T PRK08818 43 -LDPATL---LQRADVLIFSAPIRHTAALIEEYVA 73 (370)
T ss_pred -CCHHHH---hcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 111111 1578999999999988888876643
No 112
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.029 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
++++|+|+|+|.||+.+++.|.+..
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4689999999999999999999764
No 113
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.00 E-value=0.016 Score=50.70 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=47.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
+||+|+|+|.+|..+++.|.+... .++. +.+++.+. ..... ..| + .... .
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~~~~~--~~~~~----------------~~g--~------~~~~--~ 51 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDHNELH--LKKAL----------------ELG--L------VDEI--V 51 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcCCHHH--HHHHH----------------HCC--C------Cccc--C
Confidence 389999999999999999987642 3443 34443121 11000 011 0 0011 1
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~ 115 (265)
+++++ .++|+||.|+|.....+.+..+..
T Consensus 52 ~~~~~----~~aD~Vilavp~~~~~~~~~~l~~ 80 (275)
T PRK08507 52 SFEEL----KKCDVIFLAIPVDAIIEILPKLLD 80 (275)
T ss_pred CHHHH----hcCCEEEEeCcHHHHHHHHHHHhc
Confidence 23333 248999999999887777766543
No 114
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.92 E-value=0.045 Score=46.35 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=31.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~ 38 (265)
+.+||+|.|+|.+|+.+++.|.+. +..+++|+|...
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 457999999999999999999987 588999998753
No 115
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.90 E-value=0.048 Score=49.10 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|+||+|+|+|.+|..++..|.++. .++..+.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~ 32 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-ADVTLIG 32 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence 479999999999999999998874 5655554
No 116
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.87 E-value=0.024 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=20.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCC
Q 024565 4 VKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
|||+++|+|.||..+++.|.+..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g 23 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG 23 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC
Confidence 57999999999999999998764
No 117
>PRK07680 late competence protein ComER; Validated
Probab=95.83 E-value=0.019 Score=50.26 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=25.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCe--EEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDV--ELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~--el~~v~~~~ 37 (265)
|||+|+|+|.+|..+++.|.+...+ +-+.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~ 36 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT 36 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 3799999999999999999876522 335566653
No 118
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.77 E-value=0.045 Score=51.47 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=59.5
Q ss_pred CccEEEEEcc----ChhHHHHHHHHHcCCCe--EEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEE
Q 024565 2 GKVKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 75 (265)
Q Consensus 2 ~~i~vgI~G~----G~~G~~l~~~L~~~p~~--el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 75 (265)
...+|+|+|+ |..|..+++.|.++. + ++..|+-.. . + +.|
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~~-~-----------~-------------------i~G-- 51 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPKA-G-----------E-------------------ILG-- 51 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCCC-C-----------c-------------------cCC--
Confidence 4578999999 678999999999875 3 444443211 0 0 011
Q ss_pred EEEEecCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
++++ .+.++++ ..+|+++.|+|.....+.++++.+.|+|.+++
T Consensus 52 ~~~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 52 VKAY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cccc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 2333 3455553 56899999999999999999999999998876
No 119
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.71 E-value=0.014 Score=52.50 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=55.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.+++|+|+|.+|+.+++.+....+++.+.|.++..+ ...++..+ .. .+ + + .+..+ .
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~--~~---~~---------~--~-----~~~~~--~ 184 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI--QS---KF---------N--T-----EIYVV--N 184 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH--HH---hc---------C--C-----cEEEe--C
Confidence 589999999999999998876667888999987532 22221100 00 00 1 0 11222 3
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
+.++. ..++|+|+.|||.. +.... ..++.|+
T Consensus 185 ~~~~~---~~~aDiVi~aT~s~-~p~i~-~~l~~G~ 215 (325)
T PRK08618 185 SADEA---IEEADIIVTVTNAK-TPVFS-EKLKKGV 215 (325)
T ss_pred CHHHH---HhcCCEEEEccCCC-CcchH-HhcCCCc
Confidence 33333 15789999999987 55555 7788997
No 120
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.67 E-value=0.019 Score=45.19 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+||+|+|+ |.+|..++..|...+-.+-+.+.|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 58999999 99999999999988766656677764
No 121
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.64 E-value=0.034 Score=51.76 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=63.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--ECCE-
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEK- 74 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~g~- 74 (265)
++||+|+|+ |-||...++.+.++|+ |+++++...+ ..+.++...+ .-.+++- ...+. +.+. ..+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~-Ni~lL~~q~~--~f~p~~v----~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGS-NVTLLADQVR--KFKPKLV----AVRNESLVDELKEALADLD 129 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCC-CHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHhhcCCC
Confidence 479999999 9999999999999976 9999998754 3333322110 0011110 00000 0000 0000
Q ss_pred -EEEEEe-cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 75 -PVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 75 -~~~~~~-~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
...++. .++..++ -...++|+|+.+........-.-.++++|. .+.+
T Consensus 130 ~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaGK-~VAL 178 (454)
T PLN02696 130 DKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAGK-DIAL 178 (454)
T ss_pred CCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCCC-cEEE
Confidence 112221 1122222 122568999999988777767778899996 3444
No 122
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.55 E-value=0.041 Score=43.97 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=50.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 84 (265)
||+|+|+|.+|..++..|.++. .+ +.+.++.. +....+. ..+.+.. ...+..+.. .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~~~--~~~~~i~---~~~~n~~-----~~~~~~l~~---~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGRDE--EQIEEIN---ETRQNPK-----YLPGIKLPE---NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EE-EEEETSCH--HHHHHHH---HHTSETT-----TSTTSBEET---TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CE-EEEEeccH--HHHHHHH---HhCCCCC-----CCCCcccCc---ccccc--cCH
Confidence 7999999999999999999886 33 34444432 2111111 1111100 000101111 13332 455
Q ss_pred CCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 85 ~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~ 115 (265)
++. ..+.|+++.|+|+...++..+.+..
T Consensus 64 ~~a---~~~ad~IiiavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 64 EEA---LEDADIIIIAVPSQAHREVLEQLAP 91 (157)
T ss_dssp HHH---HTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred HHH---hCcccEEEecccHHHHHHHHHHHhh
Confidence 433 2678999999999999888776644
No 123
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.52 E-value=0.076 Score=47.64 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=27.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+||+|+|+|.+|..++.++..+.-.+ +.+.|..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 579999999999999999888775345 6666664
No 124
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.48 E-value=0.062 Score=47.98 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=27.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
||+|+|+|.+|..++.+|..++-++-+.+.|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 799999999999999999888766656666653
No 125
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.46 E-value=0.1 Score=46.90 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.4
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|.||+|+|+ |.+|..++..|..++...-+.+.|.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3679999999 9999999999986655544455554
No 126
>PLN02712 arogenate dehydrogenase
Probab=95.40 E-value=0.026 Score=55.65 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
++||||||+|.+|+.+++.|.++. +++.++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~d 82 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHS 82 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998874 6776543
No 127
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.40 E-value=0.03 Score=50.05 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..||+|+|+|.+|..++..|...+-..-+.+.|..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 57999999999999999999888665555666654
No 128
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.37 E-value=0.076 Score=47.27 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
.+||+|+|+|.+|..+.+.|.+.. .+|.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~ 31 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVR 31 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEE
Confidence 579999999999999999998774 4553
No 129
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.36 E-value=0.072 Score=49.88 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=58.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-----hhhhhheeecccC-CcccccceeeeCCceEEECCEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-----DYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEKPV 76 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~ 76 (265)
-.||+|.|+|.+|+.+++.|.+. +..|++|+|.+... =.+..++++-... +... .... . . + .
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-----~~~~-~--~-~--~ 299 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-----EYAE-E--F-G--A 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-----hhhh-h--c-C--C
Confidence 47999999999999999999876 59999998853211 0011111110000 0010 0000 0 0 0 0
Q ss_pred EEEecCCCCCCCcccccccEEEEecCCcc-cHHhHHHHHhCCCCeEEE
Q 024565 77 TVFGVRNPEEIPWAETGAEYVVESTGVFT-DKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~DvV~~at~~~~-~~~~~~~~~~~G~~~vvi 123 (265)
.. .+.+++ |. .++|+.+-|+.... +.+.+..+.+.+|| +|+
T Consensus 300 ~~---i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 EY---LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred ee---cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 11 234444 53 57999999987654 67777777766775 444
No 130
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.35 E-value=0.034 Score=49.95 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=27.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT 39 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~ 39 (265)
+.||+|+|+|.+|..++..+..+.-.+ +.+.|...+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence 358999999999999999888765346 677776433
No 131
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.33 E-value=0.03 Score=47.35 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.0
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G-~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||+|+| +|.+|..+++.|.+.. .++.. .++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v-~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIII-GSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEE-EEc
Confidence 4899998 6999999999998774 45543 344
No 132
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.28 E-value=0.031 Score=48.74 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC--eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~--~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|+|||++|+|.||..+++-|.+.+. -+-+.|+++..+-.. ++. ..| | +.. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~------~~~---------g---------~~~-~ 53 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALA------AEY---------G---------VVT-T 53 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHH------HHc---------C---------Ccc-c
Confidence 4799999999999999999998862 345666666433221 111 011 1 011 1
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHh--CCCCeEEEcC
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIISA 125 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~--~G~~~vvis~ 125 (265)
.+.++. ....|+||.|.-+....+...++.. .+. .|||.
T Consensus 54 -~~~~~~---~~~advv~LavKPq~~~~vl~~l~~~~~~~--lvISi 94 (266)
T COG0345 54 -TDNQEA---VEEADVVFLAVKPQDLEEVLSKLKPLTKDK--LVISI 94 (266)
T ss_pred -CcHHHH---HhhCCEEEEEeChHhHHHHHHHhhcccCCC--EEEEE
Confidence 222222 2568999999998877777766643 443 55643
No 133
>PRK06046 alanine dehydrogenase; Validated
Probab=95.27 E-value=0.024 Score=50.99 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=31.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~ 38 (265)
.++||+|+|..|+.+++.+...+.++.+.|.++..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~ 164 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK 164 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH
Confidence 58999999999999999999888899999999853
No 134
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.27 E-value=0.041 Score=49.40 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+|||+|+|+|.+|..++..|.+.. .++....
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~ 34 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG-VPVRLWA 34 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CeEEEEe
Confidence 579999999999999999998774 5554443
No 135
>PLN02602 lactate dehydrogenase
Probab=95.21 E-value=0.037 Score=50.31 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=27.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.||+|+|+|.+|..++.+|...+-+.-+.+.|..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~ 71 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN 71 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 6999999999999999999887655555666653
No 136
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.20 E-value=0.15 Score=45.72 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..||+|+|+|.+|..++.+|...+-+.-+.+.|..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 36999999999999999999988766555666653
No 137
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.14 E-value=0.095 Score=46.72 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+||+|+|+|++|..++..++.+...+ +.+.|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCC
Confidence 58999999999999999998875445 4555553
No 138
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.11 E-value=0.068 Score=46.60 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.3
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|.|.|+ |.+|+.+++.|.+. +.++.++...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCC
Confidence 4889999 99999999999876 4677666643
No 139
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.04 E-value=0.028 Score=49.81 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=25.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.||+|+|+|.+|..+++.|.++. .++ .+++++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V-~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQL-QVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeE-EEEcCC
Confidence 58999999999999999999875 555 455553
No 140
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.03 E-value=0.096 Score=46.77 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=25.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v~ 34 (265)
+||+|+|+ |++|..++..|...+.. +++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 58999999 99999999999988754 455543
No 141
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.02 E-value=0.096 Score=46.11 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||+|+|+|.+|..++..|.+.. .++..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 47999999999999999998764 56655543
No 142
>PLN00016 RNA-binding protein; Provisional
Probab=95.02 E-value=0.079 Score=48.44 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=28.1
Q ss_pred ccEEEEE----cc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGIN----GF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~----G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
++||.|. |+ |++|+.+++.|.+.. .+|.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 4789999 99 999999999999874 688777654
No 143
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.99 E-value=0.17 Score=45.09 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+||+|+|+|.+|..++.+|....-..-..+.|.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 589999999999999999977653313344444
No 144
>PLN02712 arogenate dehydrogenase
Probab=94.96 E-value=0.066 Score=52.84 Aligned_cols=31 Identities=32% Similarity=0.689 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
++||||||+|.||+.+++.|.+.. .++.+..
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~d 399 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYS 399 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc-CEEEEEE
Confidence 589999999999999999998764 6766443
No 145
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.89 E-value=0.059 Score=48.51 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
..+|||+|+|.+|..+++.|.... ++++...
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~ 47 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-VDVVVGL 47 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-CEEEEEE
Confidence 478999999999999999998774 6765443
No 146
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.83 E-value=0.042 Score=48.74 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||||+|+|.+|..+++.|.++. .++.. .++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-~~V~~-~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-HDCVG-YDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 38999999999999999998774 66654 455
No 147
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.77 E-value=0.1 Score=48.39 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||+|+|+|++|..++..|.+.. .++.++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 38999999999999999998764 5665553
No 148
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.69 E-value=0.12 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCC
Q 024565 3 KVKIGING-FGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~i~vgI~G-~G~~G~~l~~~L~~~p 26 (265)
+.||+|+| +|.+|+.+++.|.+..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G 122 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG 122 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC
Confidence 47899999 6999999999999764
No 149
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.62 E-value=0.045 Score=49.23 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=54.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.++||+|+|.+|+.+++.+.....++-+.|.+++.+- +.++..+ ..+ | ..+... .
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------~~~---------g-------~~v~~~--~ 184 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------SDY---------E-------VPVRAA--T 184 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------Hhh---------C-------CcEEEe--C
Confidence 6899999999999999999887778999999885332 2221100 000 1 011222 3
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
++++. ..++|+|+.|||... .-.....++.|+
T Consensus 185 ~~~ea---v~~aDiVitaT~s~~-P~~~~~~l~~g~ 216 (325)
T TIGR02371 185 DPREA---VEGCDILVTTTPSRK-PVVKADWVSEGT 216 (325)
T ss_pred CHHHH---hccCCEEEEecCCCC-cEecHHHcCCCC
Confidence 44443 267999999998743 212234568887
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.59 E-value=0.085 Score=47.12 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=26.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..||+|+|+|.+|+.+++.|..+ +.+-+.+++++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~ 211 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRT 211 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 47899999999999999999874 34555666664
No 151
>PLN00106 malate dehydrogenase
Probab=94.58 E-value=0.22 Score=44.81 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||+|+|+ |.+|..++..|..++.++-..+.|.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 469999999 9999999999997765554555554
No 152
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.55 E-value=0.1 Score=48.70 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+|||||+|.||+|..++..|.+. ++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~--~~V~g~D 35 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKS--RQVVGFD 35 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcC--CEEEEEe
Confidence 57999999999999999998763 7776654
No 153
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.54 E-value=0.18 Score=47.19 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=21.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC
Q 024565 3 KVKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
.+||+|+|+ |.+|..++..|...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999999 99999999999877
No 154
>PRK06444 prephenate dehydrogenase; Provisional
Probab=94.47 E-value=0.095 Score=43.70 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024565 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
|||+|+|+ |.+|+.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 48999999 99999999876543
No 155
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.45 E-value=0.15 Score=48.75 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.||||+|+|.||..++..++.+ +++|+ +.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~-l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVL-LYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 5799999999999999999877 47765 4444
No 156
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.45 E-value=0.068 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=27.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..||+|+|+|.+|+.+++.|.++. .+.+.+.++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~ 52 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRT 52 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCC
Confidence 478999999999999999998875 4445566653
No 157
>PRK05086 malate dehydrogenase; Provisional
Probab=94.42 E-value=0.32 Score=43.52 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~-~p~~el~~v~~~ 36 (265)
|||+|+|+ |.+|..++..|.. .+....+.+.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~ 35 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence 58999999 9999999998855 454455555554
No 158
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.40 E-value=0.17 Score=44.71 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||+|+|+|.+|..++..|.+.. .++..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 48999999999999999998763 4555544
No 159
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.40 E-value=0.26 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||+|+|+ |.+|..++..|..++-..-+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi 34 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 34 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence 58999999 9999999999987765544455554
No 160
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.35 E-value=0.1 Score=46.49 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|||+|+|+|.+|..++..|...+-.+-+.+.|..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4899999999999999999987645555666654
No 161
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.33 E-value=0.19 Score=44.51 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=58.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
+-||-|.|- |.+|..+++.|.+.+ ++.++-+.+....+ . +.| ++.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~~~~~---------~-------------------v~G--~~~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPGKGGT---------T-------------------VLG--LPVF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCCCCCC---------e-------------------EeC--eecc--
Confidence 468999999 999999999998875 33332222310010 0 011 2343
Q ss_pred CCCCCCCccccc--ccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETG--AEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~--~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.++++ .. +|+++.|+|.....+.++++.++|+|.++|
T Consensus 55 ~sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 3455553 33 899999999999999999999999998776
No 162
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.26 E-value=0.061 Score=47.53 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|+|+|+|.+|+.+++.|..+. +++. +.++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~-v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVF-VGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 58999999999999999999885 6655 4444
No 163
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.09 E-value=0.14 Score=45.94 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-.+|||||+|.+|+.+++.|... ++++....++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 36899999999999999999877 4887655443
No 164
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=94.04 E-value=0.085 Score=46.00 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.++|-+.|.|++|.+.+|.|..+|++++++....+
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 48999999999999999999999999999988764
No 165
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.96 E-value=0.11 Score=46.94 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=23.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~ 32 (265)
-++|||+|+|.+|+.+++.|.+.-++++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~ 175 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVA 175 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 368999999999999999984322466554
No 166
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.95 E-value=0.11 Score=46.18 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=25.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
||||||+|.+|..+++.|.++. .+|. +.++.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~-v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVV-GYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEE-EEECC
Confidence 7999999999999999998864 6665 45553
No 167
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.94 E-value=0.077 Score=49.40 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|.++||+|+|.|++|..++..|.++. .++.++.
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 88899999999999999999999874 6766654
No 168
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.93 E-value=0.13 Score=45.55 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|||||+|+|.+|..+++.|.+.. .++. +.+++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-~~v~-v~dr~ 32 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-HEVV-GYDRN 32 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-CeEE-EEECC
Confidence 38999999999999999998774 6654 45553
No 169
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.081 Score=46.41 Aligned_cols=32 Identities=38% Similarity=0.550 Sum_probs=27.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++.||+|+|+|++|..++..+..+. .+++.+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~ 32 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV 32 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence 77789999999999999999999884 566554
No 170
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.86 E-value=0.054 Score=47.72 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
||||+|+|.+|..+++.|.++. +++. +.+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~-~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLH-VTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence 6999999999999999999774 6765 44553
No 171
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.82 E-value=0.22 Score=45.94 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=27.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
++||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 579999999 999999999998874 67777654
No 172
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.82 E-value=0.22 Score=44.32 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=25.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
||+|+|+|.+|..++..|...+-..-+.+.|.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 89999999999999999988764423444444
No 173
>PRK07574 formate dehydrogenase; Provisional
Probab=93.81 E-value=0.083 Score=48.62 Aligned_cols=29 Identities=41% Similarity=0.544 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
++|||+|+|.||+.+++.|... ++++.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~ 221 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYT 221 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 6899999999999999999876 4776654
No 174
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.80 E-value=0.083 Score=41.14 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=27.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..|+.|+|+|-+|+.++..|..+ +++-+.|+.++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 46899999999999999999988 46655566564
No 175
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.75 E-value=0.079 Score=46.51 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=26.6
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
||-|.|+ |..|.+|.+.|. ++.+++++....
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~ 33 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAE 33 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcc
Confidence 4999999 999999999988 678888886654
No 176
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.74 E-value=0.13 Score=45.56 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
..||.|+|+|.+|+.+++.|.... .++...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~ 181 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG-ANVTVG 181 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEEEE
Confidence 368999999999999999999875 665544
No 177
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.74 E-value=0.17 Score=45.31 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=49.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
++||+|+|+|..|..++..|.++. .+. .|..++. ....+ . .+....+|- .|..++ ..+...
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~-lw~r~~~-~~~~i---~-~~~~N~~yL-------p~i~lp---~~l~at-- 62 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVR-LWGRDEE-IVAEI---N-ETRENPKYL-------PGILLP---PNLKAT-- 62 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeE-EEecCHH-HHHHH---H-hcCcCcccc-------CCccCC---cccccc--
Confidence 479999999999999999999884 232 2222211 11111 1 111112221 010010 012221
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHH
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAH 113 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~ 113 (265)
.|.++. ..++|+|+++.|+...++.+.++
T Consensus 63 ~Dl~~a---~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 63 TDLAEA---LDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred cCHHHH---HhcCCEEEEECChHHHHHHHHHH
Confidence 344433 25699999999999888877664
No 178
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.74 E-value=0.1 Score=46.63 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+|||+|+|.||+++++.|... ++++.+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 6899999999999999999976 47776553
No 179
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.68 E-value=0.19 Score=47.83 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=25.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+||||||+|.||..++..|.++. ++|. +.++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeCC
Confidence 58999999999999999999884 6654 55553
No 180
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.66 E-value=0.1 Score=46.21 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=24.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||+||.|.||..+++.|.+.. +++. +.++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~-v~~~ 31 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLH-VTTI 31 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEE-EEeC
Confidence 7999999999999999999875 5654 4443
No 181
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.63 E-value=0.13 Score=48.17 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=23.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v 33 (265)
|||+|+|+ |.+|..+++.|.+.. .++...
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~ 30 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVT 30 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEE
Confidence 48999985 999999999998764 555444
No 182
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.59 E-value=0.14 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEccChhHHHHHHHHHcCC
Q 024565 5 KIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p 26 (265)
||+|+|+|.||..+++.|.+..
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999998763
No 183
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.52 E-value=0.35 Score=42.96 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=25.7
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|+|+|+|++|..++..|...+-++-+.+.|..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 68999999999999999888755555666654
No 184
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.44 E-value=0.32 Score=42.96 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=58.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
.-||-|.|. |..|..+++.|...+ +.+++=+.+....+ . -.| ++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~p~~~~~---------~------------v~G---------~~~y-- 52 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVTPGKGGT---------T------------VLG---------LPVF-- 52 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCC-CCEEEEECCCCCcc---------e------------ecC---------eecc--
Confidence 358999999 999999999998775 44444222320010 0 011 3343
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.++++.. .++|+++.|.|.....+.++++.++|+|.+++
T Consensus 53 ~sv~dlp~~-~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 53 DSVKEAVEE-TGANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CCHHHHhhc-cCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 345555310 03799999999999999999999999988776
No 185
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.41 E-value=0.14 Score=41.81 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=26.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-.+|||+|+|.||+++++.|.... +++.+....
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence 368999999999999999999774 787766543
No 186
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.37 E-value=0.34 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
++||+|+|+|..|..++..|.++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~ 34 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENT 34 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC
Confidence 479999999999999999998763
No 187
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.36 E-value=0.46 Score=42.71 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.6
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVE 29 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~e 29 (265)
+++||+|+|+ |.+|..++..|...+-+.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~ 30 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFG 30 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCccc
Confidence 3689999999 999999999998776443
No 188
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.32 E-value=0.41 Score=42.73 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=49.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC---C-EEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG---E-KPVTVF 79 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-~~~~~~ 79 (265)
|||.|+|+|.+|..+...|.+.+ -.++.+.... ..+.+. +.| |.+. + ......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~-~~~~l~-------------------~~G--L~i~~~~~~~~~~~~ 57 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR-RLEALK-------------------KKG--LRIEDEGGNFTTPVV 57 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH-HHHHHH-------------------hCC--eEEecCCCccccccc
Confidence 58999999999999999999887 3444444332 122110 001 1111 1 011122
Q ss_pred ecCCCCCCCcccccccEEEEecCCcccHHhHHHHHh
Q 024565 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 80 ~~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~ 115 (265)
...+++.. ..+|+||.++-+....+..+.+..
T Consensus 58 ~~~~~~~~----~~~Dlviv~vKa~q~~~al~~l~~ 89 (307)
T COG1893 58 AATDAEAL----GPADLVIVTVKAYQLEEALPSLAP 89 (307)
T ss_pred cccChhhc----CCCCEEEEEeccccHHHHHHHhhh
Confidence 22334443 578999999988877776665543
No 189
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.27 E-value=1.8 Score=36.08 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
-.||-|+|+|.+|...++.|.+.. .+++.|. +.... .+..+. ..+ .+.. .....
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs-~~~~~-~l~~l~----------------~~~-~i~~------~~~~~ 63 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVIS-PELTE-NLVKLV----------------EEG-KIRW------KQKEF 63 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEc-CCCCH-HHHHHH----------------hCC-CEEE------EecCC
Confidence 468999999999999999998875 5666553 42111 111110 001 1111 00011
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEEcCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvis~~ 126 (265)
..+++ .++|+||.||+....-+.+....+.+. .+-.++
T Consensus 64 ~~~~l----~~adlViaaT~d~elN~~i~~~a~~~~--lvn~~d 101 (202)
T PRK06718 64 EPSDI----VDAFLVIAATNDPRVNEQVKEDLPENA--LFNVIT 101 (202)
T ss_pred Chhhc----CCceEEEEcCCCHHHHHHHHHHHHhCC--cEEECC
Confidence 22334 578999999998876666655556664 433444
No 190
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.24 E-value=0.58 Score=41.86 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.3
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
||+|+|+ |.+|..++.+|...+-+.-..+.|..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIA 34 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 7999999 99999999999877655545566653
No 191
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=93.21 E-value=0.2 Score=38.83 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=30.8
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccccChhh
Q 024565 6 IGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDY 42 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~ 42 (265)
|.|+|+ |-||++.++.+.+|| .|++++++..+ +.+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~ 38 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEK 38 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHH
Confidence 689999 999999999999997 59999998854 4433
No 192
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.14 E-value=0.12 Score=42.56 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=23.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||+|+|.||+|..++-.|+++. ++++++=
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEe
Confidence 68999999999999999999885 7777763
No 193
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.11 E-value=0.1 Score=49.86 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
..||||||+|.||..++..++.+. ++|+..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG-~~V~l~ 34 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAG-HQVLLY 34 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence 468999999999999999998874 666544
No 194
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.05 E-value=0.28 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=25.8
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+-.||||+|+|.+|..+++.|.++. ++++...+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~ 34 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR 34 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence 3478999999999999999999774 56543333
No 195
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.04 E-value=0.23 Score=43.71 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=26.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||-|+|+ |++|..+.+.|.++ +.+++++..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 68999999 99999999999975 478777743
No 196
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.93 E-value=0.17 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p 26 (265)
++||+|+|+|.+|..++..|.++.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 579999999999999999999775
No 197
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.90 E-value=0.16 Score=45.75 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+|||+|+|.||+++++.|... ++++.+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence 5899999999999999999877 47766553
No 198
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.89 E-value=0.28 Score=44.13 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=25.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeE-----EEEEecc
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVE-----LVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e-----l~~v~~~ 36 (265)
+.||+|+|+ |.+|..++..|..+.-+. -+.+.|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 579999999 999999999988654343 3445554
No 199
>PLN03139 formate dehydrogenase; Provisional
Probab=92.63 E-value=0.15 Score=47.04 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|||+|+|+||+.+++.|... ++++.+ +++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~-~d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY-HDR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 5899999999999999999865 588754 454
No 200
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.58 E-value=0.31 Score=41.46 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=26.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|++.|+|+|.+|..+++.|.+.. .+++.|-..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC
Confidence 58999999999999999999885 566666543
No 201
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.55 E-value=0.26 Score=45.16 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+||+|.-++-.++.+ ++.++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 7999999999999999888877 4888777
No 202
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.37 E-value=5.7 Score=33.18 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=50.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-c
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-V 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~ 81 (265)
-.||.|+|+|.+|..-++.|.+.. .+++.| ++..+. .+..+. ..+ .+ .... +
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~-~l~~l~----------------~~~-~i-------~~~~~~ 61 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELES-ELTLLA----------------EQG-GI-------TWLARC 61 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCH-HHHHHH----------------HcC-CE-------EEEeCC
Confidence 358999999999999999999875 565544 443221 111110 011 11 1111 1
Q ss_pred CCCCCCCcccccccEEEEecCCc-ccHHhHHHHHhCCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGA 118 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~-~~~~~~~~~~~~G~ 118 (265)
...+++ .++|+||-||+.. ........+.+.|+
T Consensus 62 ~~~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 62 FDADIL----EGAFLVIAATDDEELNRRVAHAARARGV 95 (205)
T ss_pred CCHHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence 122333 5789999999986 55556666777886
No 203
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=92.15 E-value=0.078 Score=47.34 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|.+. |||.|.|...+-++-+|.+-+ +++.++-.+..... ... + . . . ..+.+.
T Consensus 1 m~Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt~~ea---------~a~-----a----a-~--~-----~v~~~t 52 (367)
T KOG2742|consen 1 MSPG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRTKTEA---------KAK-----A----A-E--M-----NVRKYT 52 (367)
T ss_pred CCCc-eeEeccChhHhhhhhhhhhcc-chHhhhhchhhhHH---------HHh-----h----h-c--c-----chhhcc
Confidence 6666 999999999999988888888 88877766521111 000 0 0 0 0 111221
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
...+++ |.+.++|+|+.+.|+..+++.+.+++..|. +|++
T Consensus 53 -~~~dei-Ll~~~vdlv~i~lpp~~~~eI~~kal~~Gk-~Vvc 92 (367)
T KOG2742|consen 53 -SRLDEI-LLDQDVDLVCISLPPPLHAEIVVKALGIGK-HVVC 92 (367)
T ss_pred -ccchhh-hccCCcceeEeccCCccceeeeeccccCCc-eEEe
Confidence 234555 667899999999999999999999999995 5666
No 204
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=92.11 E-value=0.45 Score=42.66 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT 39 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~ 39 (265)
+++|.|-|+ |+||..+++.|+.+. .+|.+-+....+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPED 42 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcch
Confidence 479999999 999999999999995 677777765434
No 205
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.00 E-value=2.6 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
-.||-|+|+|.+|...++.|.+.. .+++.|
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 468999999999999999998764 666655
No 206
>PLN00203 glutamyl-tRNA reductase
Probab=91.99 E-value=0.51 Score=45.23 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=26.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..+|+|+|+|.+|+.+++.|..++ ++-+.|++++
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs 299 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRS 299 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCC
Confidence 468999999999999999999875 5444555553
No 207
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.91 E-value=0.82 Score=43.20 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=52.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
..||.|+|+|.+|.++++.|.++. .+++.+-...... ..+...+ . ..| +.++..
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l---------~------~~g---------v~~~~~ 70 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAIL---------E------ALG---------ATVRLG 70 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHH---------H------HcC---------CEEEEC
Confidence 358999999999999999998774 6755443221111 1111000 0 111 122211
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
.+.+ . ..++|+|+.+++..........+.+.|+ .++
T Consensus 71 ~~~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~ 106 (480)
T PRK01438 71 PGPT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVW 106 (480)
T ss_pred CCcc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence 2222 1 1468999999887666667777788887 455
No 208
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.86 E-value=1 Score=40.02 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.|||+|+|+|.+|..+.-.|.+.. .+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r 33 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLILR 33 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEEEe
Confidence 479999999999999999888763 45555543
No 209
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.85 E-value=0.64 Score=36.35 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+|+|+|.+|..++..|.+ ...++..+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 7899999999999999987 45676666654
No 210
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.81 E-value=0.32 Score=44.80 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVE 29 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~e 29 (265)
..||+|+|+ |.+|..++..|....-+.
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~ 71 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFG 71 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccC
Confidence 579999999 999999999998775443
No 211
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=91.69 E-value=0.28 Score=44.86 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=60.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCC---ceEE--EC--CE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FG--EK 74 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~--~~--g~ 74 (265)
.||+|+|+ |-||++.++.+.++|+ +++++++..+ ..+.+..+.+ .-.+++- ...+. +.+. .. +.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~-n~~~L~~q~~--~f~p~~v----~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGK-NVALMVEQIL--EFRPKFV----AIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHH--HcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence 79999999 9999999999999975 9999998764 3333322211 1011110 00000 0000 00 10
Q ss_pred EEEEEec-CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565 75 PVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 75 ~~~~~~~-~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~ 119 (265)
.++++.. ....++ -...++|+|+.+.-......-.-.++++|.+
T Consensus 75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~ 119 (389)
T TIGR00243 75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAGKT 119 (389)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCCc
Confidence 1223221 111111 0114689999998877777777788889963
No 212
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.59 E-value=0.8 Score=45.88 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.||+|+|+|.||..++..++.+ +++|+.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~ 364 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLK 364 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEe
Confidence 5899999999999999999887 4766543
No 213
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.59 E-value=0.43 Score=42.27 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=23.4
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|+|+|+|.+|..++..+..+.-.+ +.+.|..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~e-V~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGD-VVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcE-EEEEeCC
Confidence 689999999999999888764235 4455654
No 214
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.54 E-value=1.1 Score=44.66 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.||+|+|+|.||..++..++.+-+++|+. .|.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l-~d~ 336 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRI-KDI 336 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEE-EeC
Confidence 58999999999999999887432465543 444
No 215
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.28 E-value=0.32 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+..||+|+|+|.+|..++..+.++. ++++. .+.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G-~~V~l-~d~ 34 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTG-YDVTI-VDV 34 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcC-CeEEE-EeC
Confidence 55568999999999999999998874 56554 444
No 216
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.20 E-value=0.27 Score=44.26 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=29.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+++|+|+|..|+.+++.|.....++-+.|.+++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~ 163 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARD 163 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC
Confidence 5899999999999999999854568888888875
No 217
>PRK05442 malate dehydrogenase; Provisional
Probab=91.12 E-value=0.4 Score=43.21 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDV 28 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~ 28 (265)
+.||+|+|+ |.+|..++..|....-+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~ 30 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDML 30 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhc
Confidence 689999999 99999999988765433
No 218
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.12 E-value=0.34 Score=39.69 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=23.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
||+|+|+|.+|+.++..++.+ ++++..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 799999999999999999988 57765443
No 219
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.04 E-value=0.35 Score=42.50 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|.+.||+|+|+|.+|..++..+.++. .++..+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G-~~V~l~ 32 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHG-FDVTIY 32 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 55679999999999999999998763 554433
No 220
>PRK08291 ectoine utilization protein EutC; Validated
Probab=91.02 E-value=0.3 Score=43.99 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=28.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+++|+|+|..|+.+++.+.....++-+.|.+++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~ 166 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARD 166 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 5899999999999999999864458888888875
No 221
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=91.02 E-value=2.5 Score=39.58 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=26.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+||-|.|+ |++|+.+++.|.++. .+|+++.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999 999999999999874 6777764
No 222
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.00 E-value=0.5 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVE 29 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~e 29 (265)
.||+|+|+ |.+|..++..|...+-+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~ 27 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFG 27 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccC
Confidence 48999999 999999999998765443
No 223
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.85 E-value=1.1 Score=41.69 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=51.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
|...||.|+|.|.+|+.+++.|.+.. .++. ..|...... . . .+ .+ +. ...
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~-g~D~~~~~~-----~---~-------------~~-~~---~~--~~~- 50 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVI-GVDKSLEAL-----Q---S-------------CP-YI---HE--RYL- 50 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEE-EEeCCcccc-----c---h-------------hH-HH---hh--hhc-
Confidence 66789999999999999999998775 4543 344321110 0 0 00 00 00 000
Q ss_pred cCCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~ 119 (265)
.+.+.+ ..++|+||.+.|.......+..++++|++
T Consensus 51 -~~~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 51 -ENAEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred -CCcHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 112222 14579999888766667788899999983
No 224
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.81 E-value=0.35 Score=45.81 Aligned_cols=32 Identities=38% Similarity=0.458 Sum_probs=27.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~ 34 (265)
||||+|+|+||+|..++-.|+++. +++++++-
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 379999999999999999999773 68888774
No 225
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=90.75 E-value=0.84 Score=42.33 Aligned_cols=92 Identities=22% Similarity=0.348 Sum_probs=55.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.||-|+|+|-||..+++.|.++. +.-+.|+.+... ...++.-+ ++..+.. .
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~erA~~La~~~------------------------~~~~~~l---~ 230 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLERAEELAKKL------------------------GAEAVAL---E 230 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHh------------------------CCeeecH---H
Confidence 57999999999999999999996 566666666432 23333111 0111111 1
Q ss_pred CCCCCCcccccccEEEEecCCc---ccHHhHHHHHhCCCCeEE--EcCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVF---TDKDKAAAHLKGGAKKVI--ISAP 126 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~---~~~~~~~~~~~~G~~~vv--is~~ 126 (265)
+..+. ..++|+||.||+.. ...+.++.+++...+.++ |+-|
T Consensus 231 el~~~---l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 231 ELLEA---LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHh---hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 11111 15799999998753 467777777766543133 4555
No 226
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.58 E-value=1.5 Score=43.74 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=23.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.||+|+|+|.||..++..++.+ +++|+-+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~ 342 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMK 342 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEE
Confidence 5899999999999999998887 4665433
No 227
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.52 E-value=0.51 Score=39.32 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=27.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
-++|+|+|+|.+|+.+++.|.+.. .+++ ++|..
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcCC
Confidence 478999999999999999999874 7877 66653
No 228
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.41 E-value=0.68 Score=32.19 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
||.|+|+|++|.+++..|.+.. .+++-+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEec
Confidence 7899999999999999998864 67665553
No 229
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.24 E-value=0.46 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+ +.||||+|+|.||..+++.+.++. .++.. .++
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G-~~V~~-~d~ 35 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG-MDVWL-LDS 35 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC-CeEEE-EeC
Confidence 54 368999999999999999999874 66654 444
No 230
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.15 E-value=1.2 Score=44.45 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=23.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~ 32 (265)
.||+|+|+|.||..++..++..-+++|+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l 338 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRI 338 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEE
Confidence 58999999999999999888343466554
No 231
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=90.13 E-value=0.6 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~ 36 (265)
.||+|+|+|.+|..+++.|.+.. ..++. +.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~-~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVV-AVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEE-EEEC
Confidence 68999999999999999998764 23443 4454
No 232
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.12 E-value=0.72 Score=42.88 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|+|+|+|.+|+.+++.+.... ++++. ++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 58999999999999999988774 56544 444
No 233
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.12 E-value=3.3 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=27.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..+|-|+|.|.+|..=++.|.+.. .+++.+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 478999999999999999999885 777766644
No 234
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=1.6 Score=40.83 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=52.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
..+|.|+|+|.+|..+++.|++.. .++.. ++..... .+...+ + .+. ..| +.++...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~-~d~~~~~-~~~~~~--~----~l~------~~~---------~~~~~~~ 60 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVIL-TDEKEED-QLKEAL--E----ELG------ELG---------IELVLGE 60 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCCchH-HHHHHH--H----HHH------hcC---------CEEEeCC
Confidence 478999999889999999999885 56554 4443111 110000 0 000 001 1122212
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
.+++. ..++|+||.+++.....+....+.+.|+
T Consensus 61 ~~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 61 YPEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred cchhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22222 1568999999987777777778888887
No 235
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.03 E-value=0.56 Score=42.59 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+|.|+|+|.+|...+.++....--+++ +.|.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi-v~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVI-VVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEE-EeCCC
Confidence 699999999999987777766544444 44553
No 236
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.93 E-value=1.4 Score=38.93 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=21.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVEL 30 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el 30 (265)
.+|+|+|. |.+|+-++.+|.+.. ..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~g-atV 185 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKN-ATV 185 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCC-CEE
Confidence 68999999 999999999998763 444
No 237
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.90 E-value=0.88 Score=42.46 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-.+|+|+|+|.+|+.+++.|.... ++++ +++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~G-a~Vi-V~d~ 243 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLG-ARVI-VTEV 243 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEE-EEcC
Confidence 358999999999999999998774 6644 4443
No 238
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.81 E-value=1.9 Score=40.53 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=53.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.+||.|+|+|..|+.+++.|.++. .++ .++|......... . .+.. ..+ +.+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~~~------~-~~~~-------~~~---------i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEGLA------A-QPLL-------LEG---------IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccchh------h-hhhh-------ccC---------ceeecCc
Confidence 579999999999999999999885 544 4444321211000 0 0000 011 1221111
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~ 119 (265)
.+. .+| ..+|+|+.+-+-..+-.++.++.++|++
T Consensus 62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 222 334 5689999987766666788999999983
No 239
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.75 E-value=0.47 Score=42.50 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.+... ++++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~ 177 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIG 177 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence 5899999999999999999866 4777654
No 240
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.74 E-value=1.3 Score=39.16 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|.|+|+|.+|...++++... +++.+.+.+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~ 177 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWET 177 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 689999999999999877766 4765555554
No 241
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.67 E-value=1.5 Score=37.95 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=24.3
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC--CeEEEEEeccc
Q 024565 6 IGINGF-GRIGRLVARVILQRD--DVELVAVNDPF 37 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p--~~el~~v~~~~ 37 (265)
|+|+|+ |.+|..++..|...+ ...-+.+.|..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCC
Confidence 689999 999999999998776 33344555653
No 242
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.66 E-value=0.81 Score=40.94 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=24.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|||+|+|+|.+|..+...|.+.. .++. +.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-ISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CeEE-EEec
Confidence 37999999999999999998763 4444 4444
No 243
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=89.63 E-value=0.54 Score=42.25 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=27.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+||-|.|+ |++|..+++.|.+..+.+|.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 68999999 99999999999876557887775
No 244
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=89.55 E-value=0.46 Score=38.24 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=44.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
..+|+|+|||.-|...+..|.++. ++++.-.......... .+++| ..++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr~~s~s~~~------------------A~~~G---------f~v~--- 52 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG-VNVIVGLREGSASWEK------------------AKADG---------FEVM--- 52 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHH------------------HHHTT----------ECC---
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-CCEEEEecCCCcCHHH------------------HHHCC---------Ceec---
Confidence 478999999999999999999884 7765443322111111 11333 1121
Q ss_pred CCCCCCcccccccEEEEecCCcccHHh----HHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDK----AAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~----~~~~~~~G~ 118 (265)
+.++. .+..|+|+..+|.....+. +...++.|.
T Consensus 53 ~~~eA---v~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~ 89 (165)
T PF07991_consen 53 SVAEA---VKKADVVMLLLPDEVQPEVYEEEIAPNLKPGA 89 (165)
T ss_dssp EHHHH---HHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-
T ss_pred cHHHH---HhhCCEEEEeCChHHHHHHHHHHHHhhCCCCC
Confidence 11111 2568999999998766554 455677886
No 245
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.54 E-value=0.84 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+.++-|+|+|..|..++|.+..+|+...+++.|+.
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd 150 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDD 150 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCCCcceEEEECCC
Confidence 47899999999999999999999999999999873
No 246
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=89.50 E-value=0.41 Score=45.54 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=27.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
+.+||+||.|.||..+++.|.++. ++|. |.+++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G-~~V~-V~NRt 38 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRT 38 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC-CeEE-EECCC
Confidence 578999999999999999999885 6654 55553
No 247
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.50 E-value=0.51 Score=42.22 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.+... ++++.+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999998766 4777654
No 248
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=89.50 E-value=1.2 Score=40.13 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred CccEEEEEccChhHHHHHHHHHcC
Q 024565 2 GKVKIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~ 25 (265)
.++||+|+|.|..|..+++.+.+.
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n 43 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGEN 43 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhh
Confidence 468999999999999999998753
No 249
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.49 E-value=0.57 Score=41.25 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=26.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+..||+|+|+|.+|..++..|..+. .++.. .+.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l-~d~ 35 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAG-YDVLL-NDV 35 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CeEEE-EeC
Confidence 3468999999999999999998774 56553 444
No 250
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.48 E-value=0.57 Score=41.59 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCc-cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~-i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++ .||+|+|+|.+|..++..|.+.. .++..+
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~ 33 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKG-LQVVLI 33 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence 554 58999999999999999998764 666554
No 251
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.47 E-value=0.51 Score=42.19 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.+... ++++.+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~ 174 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYY 174 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEE
Confidence 6899999999999999998766 4776654
No 252
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.41 E-value=0.98 Score=38.94 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcC
Q 024565 3 KVKIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~ 25 (265)
..||.|+|+|-+|.+++..|++.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~ 33 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARL 33 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHc
Confidence 57999999999999999999864
No 253
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.31 E-value=0.49 Score=44.39 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=32.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEE-EEEeccccC-hhhhh
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVEL-VAVNDPFIT-TDYMT 44 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el-~~v~~~~~~-~~~~~ 44 (265)
|++|+|||.|..|-.++..|.++|..+- +.|..+..+ +..++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 4899999999999999999999976654 777766433 34444
No 254
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.29 E-value=1.2 Score=40.39 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEccChhHHHHHHHHHcC
Q 024565 5 KIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~ 25 (265)
||+|+|+|..|..++..|.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 699999999999999999874
No 255
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.28 E-value=0.55 Score=38.24 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=24.7
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
||.|+|+|-+|.+++..|.... +.-+.+.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6899999999999999998774 544455554
No 256
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=89.06 E-value=2.2 Score=37.33 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDD 27 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~ 27 (265)
-.|||+|+ |-+|..++|.|..|-+
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~ 192 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG 192 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC
Confidence 46999999 9999999999997743
No 257
>PRK07236 hypothetical protein; Provisional
Probab=89.05 E-value=0.56 Score=42.89 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=26.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++++|.|||+|..|..++..|.++ +++++-+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~ 35 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVF 35 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 6778999999999999999999987 3665433
No 258
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.02 E-value=0.41 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|+|+|+|.+|..+++.|..+. +.-+.+.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG-VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC-CCEEEEEeC
Confidence 58999999999999999998874 443445555
No 259
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.95 E-value=1.7 Score=35.25 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=21.3
Q ss_pred ccEEEEEccCh-hHHHHHHHHHcCCCeEE
Q 024565 3 KVKIGINGFGR-IGRLVARVILQRDDVEL 30 (265)
Q Consensus 3 ~i~vgI~G~G~-~G~~l~~~L~~~p~~el 30 (265)
-.||.|+|+|. +|..+++.|.++. +++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g-~~V 71 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN-ATV 71 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC-CEE
Confidence 36899999986 5888999998874 453
No 260
>PRK12320 hypothetical protein; Provisional
Probab=88.92 E-value=3.4 Score=41.08 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=25.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||-|.|+ |++|+.+++.|.+.. .++.++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 38999999 999999999998764 57766653
No 261
>PRK14031 glutamate dehydrogenase; Provisional
Probab=88.82 E-value=1.8 Score=40.56 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-.||+|-|+|.+|...++.|.+. +..|++|+|.
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~ 260 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS 260 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 36999999999999999999876 5999999984
No 262
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.76 E-value=1.3 Score=41.14 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
-.+|+|+|+|.+|+.+++.+... +++++.+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~ 224 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVT 224 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEE
Confidence 35899999999999999998866 4775543
No 263
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=88.69 E-value=0.59 Score=42.01 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.5
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCeEEEE
Q 024565 4 VKIGINGFGRIGRLVARVIL-QRDDVELVA 32 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~-~~p~~el~~ 32 (265)
.+|||+|+|.||+++++.+. .. ++++.+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~ 174 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY 174 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEE
Confidence 68999999999999999987 55 477653
No 264
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=88.63 E-value=0.7 Score=41.88 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=33.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccccChhh
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDY 42 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~ 42 (265)
|.|+.|+|. |-||.+.+..+.++|+ |++++++... ..+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~~ 41 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVEL 41 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHHH
Confidence 479999999 9999999999999986 8999998764 4443
No 265
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.63 E-value=1.6 Score=38.74 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|+|+|. |.+|+.++++|.++. ..++..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~ 189 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVV 189 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEE
Confidence 68999999 699999999998763 555444
No 266
>PRK08219 short chain dehydrogenase; Provisional
Probab=88.62 E-value=0.69 Score=38.36 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|+|+++-|.|+ |.+|+.+++.|.++ .++..+..
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 65678999999 99999999999987 66666653
No 267
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.54 E-value=1.3 Score=39.36 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.4
Q ss_pred EEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 8 INGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 8 I~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
|+|+|.+|..++..|..++-+.-+.+.|..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 30 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN 30 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 689999999999999988766656666653
No 268
>PLN02928 oxidoreductase family protein
Probab=88.46 E-value=0.66 Score=42.16 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.|... ++++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~ 188 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLAT 188 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence 6899999999999999999877 4787765
No 269
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.36 E-value=0.64 Score=40.09 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=58.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEEC
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p--------~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (265)
|..++|+++|+|.+|++++..+.... .++++++++........-++- ......|. ..+..+.+
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p--~nl~sewk-~~L~~st~------ 71 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLP--ENLNSEWK-SELIKSTG------ 71 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccCh--hhhchHHH-HHHHHhcC------
Confidence 67789999999999999998886422 378899988643321111100 01011121 11011111
Q ss_pred CEEEEEEecCCC-CCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 73 EKPVTVFGVRNP-EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 73 g~~~~~~~~~~~-~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
..++. .+. +.+ ......=+++|||......+...++++.|+
T Consensus 72 -~alsL---daLia~L-~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi 113 (364)
T KOG0455|consen 72 -SALSL---DALIAKL-LGSPTPLILVDNTASMEIAEIYMKFVDLGI 113 (364)
T ss_pred -CcccH---HHHHHHH-cCCCCceEEEecccHHHHHHHHHHHHhcCc
Confidence 11110 000 111 111234588999999988899999999998
No 270
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.33 E-value=0.69 Score=41.14 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
++||+|+|+|.+|..++..|.++. .+|+.. ++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G-~~V~v~-d~ 33 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG-HEVRLW-DA 33 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC-CeeEEE-eC
Confidence 368999999999999999999884 565544 44
No 271
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=88.23 E-value=0.59 Score=39.92 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+.+++ .. .++|+|++|+|+..+.+++.+++++|+. +++
T Consensus 29 d~~eL-l~-~~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~ 66 (229)
T TIGR03855 29 DFDEF-LP-EDVDIVVEAASQEAVKEYAEKILKNGKD-LLI 66 (229)
T ss_pred CHHHH-hc-CCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 45554 22 4699999999999999999999999964 544
No 272
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.18 E-value=0.8 Score=41.31 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
++|||+|+|.+|+.+++.|... ++++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~ 175 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAY 175 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 5899999999999999999876 4776654
No 273
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.17 E-value=0.6 Score=43.08 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=23.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||+|+|+||+|..++..++. +.+|+++-
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~--G~~VigvD 29 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ--NHEVVALD 29 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCcEEEEE
Confidence 389999999999999977764 47766664
No 274
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.16 E-value=0.54 Score=39.58 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=26.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~ 60 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDF 60 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 468999999999999999999774 554455554
No 275
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.93 E-value=0.76 Score=40.93 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
-.+|||+|+|.||+++++.|... ++++.+..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G~~V~~~~ 152 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-GMNIYAYT 152 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 36899999999999999988755 47776553
No 276
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.73 E-value=0.77 Score=41.43 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|||+|+|.||+.+++.|... ++++.+ +++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILY-YSR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 6899999999999999999876 477654 444
No 277
>PRK14030 glutamate dehydrogenase; Provisional
Probab=87.67 E-value=3.4 Score=38.79 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=59.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh--------hhhhhheeecccCCcccccceeeeCCceEEECCE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 74 (265)
-.||+|=|+|.+|..+++.|.+. +..|++|.|..... ..+.+++++-...+.. ....- -.+.|
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~-----~~~~~--~~~~g- 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDI-----VAPYA--EKFPG- 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCcc-----HHHHH--hcCCC-
Confidence 46999999999999999999876 69999998764221 1111122111100000 00000 00111
Q ss_pred EEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCCeEEE
Q 024565 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~~vvi 123 (265)
... .+.+++ |. .+||+.+=|. +...+.+.++.+.+.+|| +|+
T Consensus 299 -a~~---i~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 299 -STF---FAGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred -CEE---cCCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 111 134455 64 5799887764 456688888888888885 444
No 278
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.60 E-value=2.9 Score=39.57 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
..||+|+|+|..|+..+++|.++. .++ .+.|
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d 38 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-PAQ-ALTL 38 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-CEE-EEEc
Confidence 468999999999999999999874 554 3344
No 279
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=87.58 E-value=0.64 Score=41.36 Aligned_cols=88 Identities=13% Similarity=-0.030 Sum_probs=53.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
.++||+|+|..|+..++++..-..++=+.|.++..+ ...++..+ ....| .++.+. .
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~--------------~~~~~-------~~v~~~--~ 174 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF--------------SKEFG-------VDIRPV--D 174 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH--------------HHhcC-------CcEEEe--C
Confidence 579999999999999999998766888888887532 12221110 00001 112222 3
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
++++. ..++|+|+-||+... .-.-...++.|.
T Consensus 175 ~~~ea---v~~aDIV~taT~s~~-P~~~~~~l~pg~ 206 (301)
T PRK06407 175 NAEAA---LRDADTITSITNSDT-PIFNRKYLGDEY 206 (301)
T ss_pred CHHHH---HhcCCEEEEecCCCC-cEecHHHcCCCc
Confidence 44443 267999999999753 112234567786
No 280
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.49 E-value=0.86 Score=41.08 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|+++||-|.|+ |++|..+++.|.++. .+|+++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 45689999999 999999999999884 67777753
No 281
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=87.08 E-value=1.3 Score=38.45 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=30.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
-.||+|-|+|.+|+.+++.|.+. +..+++|+|..
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~ 71 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSK 71 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 37999999999999999999877 59999999853
No 282
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.06 E-value=0.89 Score=41.79 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
-.+|||+|+|.||+.+++.|... ++++.+.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~~~ 145 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-GIKTLLC 145 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEE
Confidence 36899999999999999999877 4777654
No 283
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.05 E-value=1.1 Score=41.59 Aligned_cols=36 Identities=33% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~ 36 (265)
|++.||-|+|+|+.|..+++.|.+++ +++++-|...
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~ 37 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence 67899999999999999999999885 7877777654
No 284
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=87.02 E-value=0.75 Score=42.93 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=25.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+|+|+|+|.+|+.+++.|.... ++-+.+.+++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r~ 215 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANRT 215 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeCC
Confidence 68999999999999999998764 5444555553
No 285
>PLN02858 fructose-bisphosphate aldolase
Probab=86.96 E-value=0.99 Score=48.33 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+.|||++|.|+||..+++.|.... +++. +.++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G-~~V~-v~dr 355 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN-FSVC-GYDV 355 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 478999999999999999998774 6654 4444
No 286
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=86.88 E-value=0.89 Score=43.04 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|||+|.|.||..+++.|.++. ++|. +.++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~-v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVS-VYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEE-EEeC
Confidence 4899999999999999999885 5654 4444
No 287
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.68 E-value=1.9 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.||.|+|+|.+|+..++.+.... +++.. .++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v-~d~ 198 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTI-LDI 198 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEE-EEC
Confidence 57999999999999999999874 66444 444
No 288
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=86.51 E-value=0.95 Score=40.73 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=23.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.++||+|.|+||+.+++.+..- ++++.+-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~ 175 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYY 175 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999998844 3665443
No 289
>PLN02427 UDP-apiose/xylose synthase
Probab=86.47 E-value=1.1 Score=40.85 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
++||-|.|+ |++|+.+++.|.++.+.+++++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 478999999 99999999999987556777775
No 290
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.47 E-value=1.6 Score=40.12 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=30.5
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCeEEEEEecccc
Q 024565 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFI 38 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~~~~~ 38 (265)
.+++|+|+|..++..++++.. +|+++-+.|.++..
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~ 191 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQ 191 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCH
Confidence 579999999999999999987 57798889988853
No 291
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=86.23 E-value=0.94 Score=40.06 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHc------CCCeEEEEEeccc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPF 37 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~------~p~~el~~v~~~~ 37 (265)
|+++||+|+|+|.+|..-+-.+.+ -|.+++..+.|++
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 568999999999999888755554 3667777777764
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.17 E-value=2.9 Score=37.45 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeE-EEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~e-l~~v 33 (265)
-+|.|+|+|.+|...+.++... +.+ ++++
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~ 200 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCA 200 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEE
Confidence 3789999999999999887766 354 4443
No 293
>PLN02858 fructose-bisphosphate aldolase
Probab=85.97 E-value=1 Score=48.22 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=26.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..|||+||+|.||..+++.|.++. +++. +.+++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G-~~v~-v~dr~ 36 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG-FKVQ-AFEIS 36 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC-CeEE-EEcCC
Confidence 368999999999999999999875 6654 55553
No 294
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.93 E-value=1.1 Score=40.82 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC--CCeEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~--p~~el~~v~ 34 (265)
|++++|.|||+|..|..++..|.++ .+++++-+-
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E 36 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIE 36 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEe
Confidence 8889999999999999999999876 257655443
No 295
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.74 E-value=1.1 Score=41.57 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.+... ++++.+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~ 180 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFY 180 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 5899999999999999999876 4777654
No 296
>PLN02477 glutamate dehydrogenase
Probab=85.69 E-value=1.5 Score=40.84 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
-.||+|.|+|.+|+.++++|.+. +..+++|+|.+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 36899999999999999999877 59999999874
No 297
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.54 E-value=1.4 Score=39.67 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||||+|+|.||..++..++++ +++|. +.|+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~ 38 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVV-AWDP 38 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeC
Confidence 35899999999999999999887 47765 4444
No 298
>PLN02306 hydroxypyruvate reductase
Probab=85.35 E-value=1.3 Score=40.91 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~-~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.+. .. ++++.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~ 195 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY 195 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE
Confidence 68999999999999999985 44 5776654
No 299
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=85.28 E-value=4.3 Score=35.59 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 8 INGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 8 I~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|.|+ |++|+.+++.|.++.+..-+.+.+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 6789 9999999999999875333334443
No 300
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.06 E-value=2.4 Score=37.31 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
++|-|.|+ |++|+.+++.|.++. .++.++..
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEEc
Confidence 58999999 999999999999884 57766653
No 301
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.98 E-value=1.3 Score=40.76 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
-.+|||+|+|.||+.+++.|... ++++.+.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G~~V~~~ 145 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-GWKVLVC 145 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 36899999999999999999876 4776543
No 302
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=84.94 E-value=7 Score=36.78 Aligned_cols=101 Identities=14% Similarity=0.241 Sum_probs=58.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh--------hhhhhheeeccc-CCcccccceeeeCCceEEECC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGE 73 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g 73 (265)
-.||+|=|+|.+|..+++.|.+. +..+++|+|..... ..+.+++++-.. .+... .... . ..+
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-----~~~~--~-~~~ 307 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-----EYAK--H-SST 307 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-----hhhh--c-cCC
Confidence 36999999999999999999876 59999999875111 111111100000 00000 0000 0 001
Q ss_pred EEEEEEecCCCCCCCcccccccEEEEec-CCcccHHhHHHHHhCCCC
Q 024565 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~DvV~~at-~~~~~~~~~~~~~~~G~~ 119 (265)
.... +.+++ |. .+||+.+=|. ....+.+.++.+.+.|||
T Consensus 308 --a~~~---~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak 347 (454)
T PTZ00079 308 --AKYV---PGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK 347 (454)
T ss_pred --cEEe---CCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe
Confidence 1111 23445 65 5799888765 455677888888888986
No 303
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=84.74 E-value=6.8 Score=33.67 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.4
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|-|.|+ |++|..+++.|.+.. .++.++...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 31 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRS 31 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCC
Confidence 458899 999999999998764 787777643
No 304
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=84.45 E-value=1.4 Score=38.95 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|||+||+|.+|..+++.|.+.. +++. +.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~-v~~r 31 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVT-VYNR 31 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEE-EEeC
Confidence 48999999999999999999875 5543 4444
No 305
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=84.45 E-value=4.4 Score=36.05 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=58.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
-||-|.|- |..|..+.+.+.+.+ -++++=+.+....+ + +.| ++.+ .
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~yg-t~~~~gV~p~~~~~---------~-------------------i~G--~~~y--~ 59 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---------E-------------------HLG--LPVF--N 59 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHhC-CcEEEEECCCCCCc---------e-------------------EcC--eecc--C
Confidence 58999999 999999999888775 34443333321111 0 011 3343 3
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+.++++- ..++|+++.++|.....+.++++.++|+|.++|
T Consensus 60 sv~dlp~-~~~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vI 99 (300)
T PLN00125 60 TVAEAKA-ETKANASVIYVPPPFAAAAILEAMEAELDLVVC 99 (300)
T ss_pred CHHHHhh-ccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence 4445530 013799999999999999999999999987766
No 306
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.40 E-value=3 Score=36.50 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.++.|+|+|.+|+.+++.|.... +.-+.|.+++
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g-~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLG-VAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 58999999999999999999775 3334555553
No 307
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.29 E-value=7 Score=36.53 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=51.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
..+|.|+|.|.+|...++.|.++. .+++. .|.......... +. ....| +.++...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g-~~v~~-~d~~~~~~~~~~----------l~----~~~~g---------i~~~~g~ 59 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG-AEVAA-YDAELKPERVAQ----------IG----KMFDG---------LVFYTGR 59 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeCCCCchhHHH----------Hh----hccCC---------cEEEeCC
Confidence 358999999999999999999885 66554 343211110000 00 00011 2222211
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
..+.+ + .+.|+|+-+.+-.........+.+.|+ .++
T Consensus 60 ~~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~ 95 (445)
T PRK04308 60 LKDAL-D--NGFDILALSPGISERQPDIEAFKQNGG--RVL 95 (445)
T ss_pred CCHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEE
Confidence 12221 1 468999987665555566777778887 444
No 308
>PRK05865 hypothetical protein; Provisional
Probab=83.91 E-value=4.4 Score=41.32 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=25.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 47999999 999999999998874 67766653
No 309
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.78 E-value=1.5 Score=38.46 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.||+|+|+|.+|..++..|.++. .+|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV 30 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC-CcEEEE
Confidence 58999999999999999998773 555543
No 310
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.76 E-value=4.1 Score=38.57 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+.||.|+|+|.+|+.+++.|.+.. .+ +.+.|.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G-~~-V~~~D~ 46 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG-CD-VVVADD 46 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC-CE-EEEECC
Confidence 468999999999999999998775 44 444554
No 311
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.62 E-value=6.3 Score=34.82 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=21.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~ 32 (265)
.+|.|+|. +.+|+.++.+|.+. +..++.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~atVt~ 187 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-GATVTI 187 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEE
Confidence 58999999 66699999988865 355443
No 312
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.59 E-value=1.5 Score=39.15 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|+..||||+|+|.||..++..++. .+++|+..
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~ 32 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVLK 32 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceEEE
Confidence 456799999999999999999888 44665433
No 313
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=83.51 E-value=5.3 Score=37.14 Aligned_cols=30 Identities=43% Similarity=0.654 Sum_probs=23.7
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
||.|+|.|.+|+.++++|.++. .+|. ++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~-~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEVT-VTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEEE-EEeC
Confidence 5899999999999999999874 5543 4554
No 314
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.29 E-value=2.6 Score=37.08 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=26.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.||.|+|+|-+|+.++..|.... +.-+.|.++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 47999999999999999999774 5445666663
No 315
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.25 E-value=2.2 Score=35.68 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|++++|-|.|+ |.+|+++++.|.++. .+++.+..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~ 38 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAG-ADVVVHYR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeC
Confidence 34578999999 999999999998875 46554443
No 316
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.21 E-value=5.8 Score=37.08 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC-eEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec-
Q 024565 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV- 81 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~-~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~- 81 (265)
.||.|+|.|..|+..++.|..+.+ +++. +.|.......... +. . | +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~----------l~------~-g---------~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ----------LP------E-D---------VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH----------hh------c-C---------CEEEeCC
Confidence 679999999999999999998754 6654 4553211110000 00 0 1 222211
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
.+++.+ .++|+|+-+.+-..+......+.+.|+
T Consensus 61 ~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWL----LEADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHh----ccCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 233334 468988876655445556667778887
No 317
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.03 E-value=2.3 Score=35.45 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+++|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~ 36 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYD 36 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 368999999 999999999999885 5665554
No 318
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=82.95 E-value=15 Score=31.21 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=24.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
..+|-|+|+|.++.+=++.|.+.. .+++.|+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-CYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 468999999999999888888764 5555554
No 319
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.87 E-value=4.3 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=23.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|+|+|- |.+|+.+++.|.+.. .+++..
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g-~tVtv~ 188 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVTIA 188 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCC-CEEEEE
Confidence 68999997 999999999998763 554433
No 320
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.77 E-value=7.3 Score=36.64 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.||+|+|+|..|+.+++.|.+.. .++ .++|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 58999999999999999999885 554 44554
No 321
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.66 E-value=3 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..+++|+|+|.+|+.++..|.+.. +++. +.++
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G-~~V~-i~~R 363 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAG-AELL-IFNR 363 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 468999999999999999999875 5665 4444
No 322
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.23 E-value=5.7 Score=37.79 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=50.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe-cC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~ 82 (265)
.||.|+|+|..|...++.|.... .++.. +|.... ....+. ..| +.++. ..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~~~~--~~~~l~----------------~~g---------~~~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDDDPD--ALRPHA----------------ERG---------VATVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcCCHH--HHHHHH----------------hCC---------CEEEcCcc
Confidence 58999999999999999888764 66554 664211 111100 011 11111 11
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
.++.+ .++|+||.+.+-..+......+.+.|+
T Consensus 64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 12223 468999998876666667778888887
No 323
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.15 E-value=5.1 Score=37.66 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=48.8
Q ss_pred ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~-l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
..||.|+|.|..|.. ++++|.++. .++ .++|..... ....+. +.| +.++..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~~~~~-~~~~l~----------------~~g---------i~~~~~ 58 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDLKESA-VTQRLL----------------ELG---------AIIFIG 58 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECCCCCh-HHHHHH----------------HCC---------CEEeCC
Confidence 368999999999999 799998885 664 345432111 111110 111 122211
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
.+++.+ .++|+|+-+.+-.........+.+.|+
T Consensus 59 ~~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 59 HDAENI----KDADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CCHHHC----CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 233333 468988886555445556677778887
No 324
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.14 E-value=1.5 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=24.1
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
+..+|+|||||..|...++.|.++ +++++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~ 33 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE-GHEVV 33 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC-CCCce
Confidence 467999999999999999999987 34443
No 325
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=82.12 E-value=0.58 Score=41.86 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=43.5
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
.+++|+|+|..++..++++... | ++-+.|.+++.. .+.++.-++ . + + ..+...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~--~----~---------~-------~~v~~~-- 183 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLR--D----L---------G-------VPVVAV-- 183 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHH--C----C---------C-------TCEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhc--c----c---------c-------ccceec--
Confidence 5799999999999999999874 6 888899888533 222221110 0 0 1 112222
Q ss_pred CCCCCCCcccccccEEEEecCCccc-HHhHHHHHhCCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTD-KDKAAAHLKGGA 118 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~-~~~~~~~~~~G~ 118 (265)
.++++. ..++|+|+.||++... .-.-...++.|.
T Consensus 184 ~~~~~a---v~~aDii~taT~s~~~~P~~~~~~l~~g~ 218 (313)
T PF02423_consen 184 DSAEEA---VRGADIIVTATPSTTPAPVFDAEWLKPGT 218 (313)
T ss_dssp SSHHHH---HTTSSEEEE----SSEEESB-GGGS-TT-
T ss_pred cchhhh---cccCCEEEEccCCCCCCccccHHHcCCCc
Confidence 344433 2689999999998662 112223456776
No 326
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=82.05 E-value=8.6 Score=35.61 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=30.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~ 38 (265)
-.||+|=|+|.+|+.+++.|.+. +.+|+++.|...
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g 241 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG 241 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 36899999999999999999877 799999988753
No 327
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=81.97 E-value=4.2 Score=35.95 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.+|-|.|+ |++|+.+++.|.++. .++.++...
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 68999999 999999999999874 677766654
No 328
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=81.92 E-value=2.6 Score=35.91 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
++||.|.|+ |.+|+.+++.|.++. .++.++..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence 579999999 999999999998874 67766653
No 329
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.90 E-value=6.6 Score=37.65 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.-||.|+|+|.+|...++.+.... .+ +.+.|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCC
Confidence 368999999999999999988775 45 5555553
No 330
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=81.77 E-value=2.1 Score=38.72 Aligned_cols=32 Identities=13% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++..|.|||+|.+|..++..|.++ +.+++-|
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~li 32 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGL 32 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEE
Confidence 6678899999999999999999988 4665544
No 331
>PRK06823 ornithine cyclodeaminase; Validated
Probab=81.72 E-value=2.3 Score=38.08 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=30.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~ 38 (265)
.+++|+|+|..++..++++..-..++-+.|.+++.
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~ 163 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSE 163 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCH
Confidence 57999999999999999998776688888888753
No 332
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=81.68 E-value=3.3 Score=37.27 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCC
Q 024565 5 KIGINGF-GRIGRLVARVILQRD 26 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p 26 (265)
||+|+|+ |.+|..++..|....
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~ 23 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGR 23 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhcc
Confidence 6999999 999999999998754
No 333
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=81.49 E-value=2.1 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|+++.|.|||+|..|...++.|.+.. ++++-+=
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlE 33 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLE 33 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence 56789999999999999999999886 7766553
No 334
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.38 E-value=2.1 Score=41.14 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|||+|+|.||+++++.|... ++++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~ 167 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAY 167 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE
Confidence 6899999999999999999876 4776654
No 335
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.28 E-value=2.9 Score=38.09 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~ 60 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDD 60 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 469999999999999999998763 655566654
No 336
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.21 E-value=2 Score=39.55 Aligned_cols=35 Identities=29% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~ 35 (265)
|++.||.|||+|..|...++.|.++ ++.+++-|..
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~ 36 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSD 36 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 7778999999999999999999876 4567766654
No 337
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=81.20 E-value=2.1 Score=39.51 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
+||.|||+|..|..++..|.++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~ 28 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQ 28 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 5899999999999999999987655543
No 338
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=80.95 E-value=2.3 Score=38.78 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=28.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565 2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~ 36 (265)
|+.+|.|+|+|..|..+++.|.++ ++.+++-|...
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 136899999999999999999864 77888877643
No 339
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.89 E-value=2.1 Score=40.62 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+|||+|+|.+|..+++.|.++. ++|. +.+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~-v~dr~ 33 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKIS-VYNRT 33 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEE-EEeCC
Confidence 68999999999999999999885 5544 45553
No 340
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=80.70 E-value=1.4 Score=38.71 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
..||+|+|+ |-||+.|--+|..+|.+.-.+++|..
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~ 63 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIA 63 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeecc
Confidence 579999999 99999999888888999888888765
No 341
>PLN00198 anthocyanidin reductase; Provisional
Probab=80.69 E-value=2.7 Score=37.47 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.3
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|++++|-|.|+ |++|+.+++.|.+.. .++.++.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 34688999999 999999999999874 5776554
No 342
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.67 E-value=2.1 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~ 36 (265)
|+||.|||+|..|...++.|.++ ++.+++-|...
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 36999999999999999999764 67888777643
No 343
>PRK15076 alpha-galactosidase; Provisional
Probab=80.65 E-value=1.4 Score=41.21 Aligned_cols=34 Identities=24% Similarity=0.072 Sum_probs=20.1
Q ss_pred cEEEEEccChhHH--HHHHHHHcCCCeE--EEEEeccc
Q 024565 4 VKIGINGFGRIGR--LVARVILQRDDVE--LVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~--~l~~~L~~~p~~e--l~~v~~~~ 37 (265)
+||+|+|+|.+|. .+++.+.....+. -+.+.|..
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid 39 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDID 39 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCC
Confidence 7999999999873 3333454232232 24566653
No 344
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=80.54 E-value=1.6 Score=39.58 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=60.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEE--EEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVEL--VAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 80 (265)
..+-|.|| |+.|+-+++.+.+...++. .+|+.++ ..++...++. . .+..++.|. ...+-+..
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn--~~KL~~vL~~--~---------~~k~~~~ls--~~~i~i~D 70 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRN--EKKLQEVLEK--V---------GEKTGTDLS--SSVILIAD 70 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccCceEEEecCC--HHHHHHHHHH--H---------hhccCCCcc--cceEEEec
Confidence 56899999 9999999999887433332 3455553 2232222210 0 001111111 11122222
Q ss_pred cCCCCCCCcccccccEEEEecCCcc--cHHhHHHHHhCCCCeEEEcCC
Q 024565 81 VRNPEEIPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 81 ~~~~~~~~~~~~~~DvV~~at~~~~--~~~~~~~~~~~G~~~vvis~~ 126 (265)
..|++.++=-+.++.+|+-|.++.. -...++.+.+.|+.++.||+.
T Consensus 71 ~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 71 SANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred CCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 2334333211467899999999864 234567888999988888876
No 345
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=80.53 E-value=1.9 Score=37.88 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=20.8
Q ss_pred EEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 8 I~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+|.|.+|..+++.|.+.. .++ .+.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G-~~V-~v~dr 27 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-HPV-RVFDL 27 (288)
T ss_pred CCcccHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 5899999999999998774 454 34455
No 346
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.52 E-value=2.3 Score=40.87 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+|||+|+|.||+.+++.|... ++++.+..
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999999876 47766543
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.50 E-value=11 Score=33.94 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
-+|.|+|+|.+|...+.++.... .+++++..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~ 204 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNR 204 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence 47999999999999998877664 67766654
No 348
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.43 E-value=7.2 Score=34.45 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=22.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+|.|+|. +.+|+.++.+|.+. +..++...
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~-gatVtv~~ 189 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK-NASVTILH 189 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEe
Confidence 68999999 55999999999876 35554443
No 349
>PLN02240 UDP-glucose 4-epimerase
Probab=80.38 E-value=2.8 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=27.0
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+..||-|.|+ |.+|..+++.|.+.. .+|+++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 3469999999 999999999999875 6777764
No 350
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.35 E-value=2.5 Score=38.89 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|.|||+|.+|...++.|++. +.+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vl 30 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVF 30 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEE
Confidence 6999999999999999999986 4665444
No 351
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.94 E-value=3 Score=37.51 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCC
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p 26 (265)
++||+|+|+ |.+|..+++.|..++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 579999999 999999999998865
No 352
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.78 E-value=4.2 Score=37.52 Aligned_cols=161 Identities=12% Similarity=0.120 Sum_probs=82.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCE-EEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~ 81 (265)
|-||=|+|.|.++-+++..+.++-..+|--++..+...+.+..-+ ......+. +.....+.-...|+ .+..+.
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL--~~~~~~~~---v~vqn~~h~~l~G~~~id~~~- 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEAL--ARSDGLFE---VSVQNEQHQALSGECTIDHVF- 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHH--HhCCCEEE---EeecchhhhhhcCeEEhhHhh-
Confidence 368999999999999999999886555433333322222221111 11011111 01111111111221 222111
Q ss_pred CCCCCCCcccccccEEEEecCCcccHHhHHHH---HhCCCCeEEE-cCC--C---------C-C-CceEE-----ee---
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAH---LKGGAKKVII-SAP--S---------K-D-APMFV-----VG--- 136 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~---~~~G~~~vvi-s~~--~---------~-~-~~~~v-----~~--- 136 (265)
++.+++. .+-|.+++|+|.+.-.+...+. .=.+.|++|+ |.. + . . +..++ +|
T Consensus 75 ~~~~~i~---g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr 151 (429)
T PF10100_consen 75 QDYEEIE---GEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTR 151 (429)
T ss_pred cCHHHhc---ccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccce
Confidence 4555552 5569999999987655444322 1234566665 544 1 0 0 12222 11
Q ss_pred ---------eccccccCCCCeEEcCCCchhhhHhHHHHHHHhcCceE
Q 024565 137 ---------VNEHEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (265)
Q Consensus 137 ---------vn~~~~~~~~~~Va~p~C~~ta~~~~L~pL~~~~~i~~ 174 (265)
+-...+| .++--..++.....+--|.-++++.||+-
T Consensus 152 ~~d~~~~~~vlt~~vK--~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 152 WSDGEQPNRVLTTAVK--KKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred eccCCCcceehhhhhh--ceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 1112333 35555555667777778888889989874
No 353
>PRK09126 hypothetical protein; Provisional
Probab=79.71 E-value=2.5 Score=38.47 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
||..+|.|+|+|..|..++..|.++ +++++-+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~ 32 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLI 32 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEE
Confidence 7788999999999999999999876 4665444
No 354
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=79.60 E-value=2.3 Score=39.61 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.||.|+|+|-+|+.++..|..+. +.-+.|+.++
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g-~~~I~V~nRt 214 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANRT 214 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 68999999999999999999874 5445566554
No 355
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.54 E-value=3.1 Score=37.93 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=27.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.+||.|.|+ |++|+.+++.|.++. .++.++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 579999999 999999999999874 67777753
No 356
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.46 E-value=1.6 Score=40.01 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=26.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.-+.+.|.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~ 73 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLIDD 73 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 468999999999999999999874 544455554
No 357
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=79.42 E-value=3.5 Score=37.22 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=54.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccCh-hhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
-.+||||+|..++-.++++...-+++=+.|.++..+. +.++.-+ . ...+ . ++....
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l---------~-----~~~~-------~--~v~a~~ 187 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL---------R-----KRGG-------E--AVGAAD 187 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH---------H-----hhcC-------c--cceecc
Confidence 3689999999999999999987668888888875432 2222111 0 0111 0 111113
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~ 118 (265)
+.++. -.++|+|+-||+... .-.....++.|.
T Consensus 188 s~~~a---v~~aDiIvt~T~s~~-Pil~~~~l~~G~ 219 (330)
T COG2423 188 SAEEA---VEGADIVVTATPSTE-PVLKAEWLKPGT 219 (330)
T ss_pred CHHHH---hhcCCEEEEecCCCC-CeecHhhcCCCc
Confidence 33332 267999999999765 333445677886
No 358
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=79.33 E-value=2.3 Score=37.68 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=25.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+.|||-+|.|.+|......|..+. ..| .|.++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G-~kV-tV~dr 66 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAG-YKV-TVYDR 66 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcC-CEE-EEEeC
Confidence 579999999999999999999885 433 34444
No 359
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.08 E-value=3.1 Score=36.11 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=23.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||-|.|+ |. |+.+++.|.+.+ .++++.+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~ 31 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVT 31 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEc
Confidence 47999999 99 999999998775 66655443
No 360
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=78.95 E-value=2.9 Score=42.61 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC---CCeEEEEEecc
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~---p~~el~~v~~~ 36 (265)
|+++||.|||+|+.|...++.|.++ ++++++-+...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 7778999999999999999988753 46888887654
No 361
>PRK08163 salicylate hydroxylase; Provisional
Probab=78.87 E-value=3 Score=38.04 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=23.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
+.+|.|||+|..|..++..|.++. ++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g-~~v~ 31 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG-IKVK 31 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC-CcEE
Confidence 479999999999999999998763 6654
No 362
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=78.57 E-value=8.8 Score=34.44 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=59.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
-||-|-|. |.-|..+.+...+.. -++++=+.+...++ .+..-| +++| .
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~yg-t~iv~GV~Pgkgg~--------------------------~v~~~G--vpvy--~ 78 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEYG-TKMVGGVNPKKAGT--------------------------THLKHG--LPVF--A 78 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHhC-CcEEEEECCCCCCc--------------------------eEecCC--cccc--C
Confidence 58999999 999999999988874 45554444432221 010001 3444 2
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+.++++ ...++|+++.+.|.....+.+.++.++|++.+|+
T Consensus 79 sv~ea~-~~~~~D~avI~VPa~~v~dai~Ea~~aGI~~~Vi 118 (317)
T PTZ00187 79 TVKEAK-KATGADASVIYVPPPHAASAIIEAIEAEIPLVVC 118 (317)
T ss_pred CHHHHh-cccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence 334442 1124899999999999999999999999998776
No 363
>PRK08223 hypothetical protein; Validated
Probab=78.21 E-value=3.8 Score=36.23 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=26.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.-||.|+|+|-+|..++..|.... +.-..+.|.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADF 59 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 468999999999999999998774 555556654
No 364
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=78.14 E-value=3 Score=39.02 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+.+|.|+|+|.+|.+++..|+++. ++++-+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-l~V~Li 31 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-VPVELY 31 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 478999999999999999999874 554444
No 365
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=78.04 E-value=15 Score=28.66 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=30.1
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
+..+++ ..+|+|-.--++....+.++++++.|+|.+..
T Consensus 66 sL~dIp---e~IDiVdvFR~~e~~~~i~~eal~~~~kv~W~ 103 (140)
T COG1832 66 SLADIP---EPIDIVDVFRRSEAAPEVAREALEKGAKVVWL 103 (140)
T ss_pred cHHhCC---CCCcEEEEecChhhhHHHHHHHHhhCCCeEEE
Confidence 345564 56899888888889999999999999875554
No 366
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=77.90 E-value=5.5 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..|++|+|+|.+|+.+++.|.+.. ...+.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999998873 333455544
No 367
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=77.72 E-value=11 Score=33.98 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=23.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+|.|.|+|.+|..+++++... +.+++.+..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 688999999999999887766 467665544
No 368
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.68 E-value=14 Score=33.38 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
-+|+|+|+|-.|-..++.+.... .+++++....
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~ 200 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSE 200 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCCh
Confidence 48999999877887777777665 8999887653
No 369
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=77.64 E-value=3.6 Score=40.64 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=28.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
++||-|.|+ |++|+.+++.|.++.+.+++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 578999999 999999999999865688888754
No 370
>PRK11445 putative oxidoreductase; Provisional
Probab=77.56 E-value=3 Score=37.61 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|+.|.|+|+|..|..++..|.++ ++++.+=
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~liE 30 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK--MKVIAID 30 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc--CCEEEEE
Confidence 37899999999999999999876 6655443
No 371
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=77.46 E-value=4.1 Score=37.87 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=26.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|.+.||.|+|+|+.|..+++.|. .++++++-|..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~-~~~~~ItlI~~ 41 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLD-PKKYNITVISP 41 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhC-cCCCeEEEEcC
Confidence 35689999999999999998885 34578777654
No 372
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=77.23 E-value=7.3 Score=33.84 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.++.|+|+|-+|+.+++.|.+.. .++. +.++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~-v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVI-IANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 57999999999999999999875 5554 4444
No 373
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=77.19 E-value=3.7 Score=38.41 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v 33 (265)
|+++.|-|||+|-+|..+.+.|.+. |+.+++-+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~ll 34 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALL 34 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEE
Confidence 6789999999999999999999976 66766555
No 374
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=77.12 E-value=3.8 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
||.|+|+|.+|.++++.|.... +.-..+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 6899999999999999998775 554555554
No 375
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=77.08 E-value=3 Score=32.05 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=26.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|+|.+|.+++..|.... +.-..+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCC
Confidence 368999999999999999998774 555556664
No 376
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=77.06 E-value=3.5 Score=37.60 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|.+.+|.|+|+|..|..++..|.+.. ++++-+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~ 32 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQG-RSVAVI 32 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence 66679999999999999999998764 665444
No 377
>PRK08013 oxidoreductase; Provisional
Probab=77.02 E-value=3.5 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|+..+|.|+|+|.+|..++..|.++ +++++-+
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~-G~~v~vi 32 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS-GLRVAVL 32 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC-CCEEEEE
Confidence 6678999999999999999988776 4776544
No 378
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=76.96 E-value=4 Score=36.86 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.3
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
++.+|.|||+|.+|...+..|.++.. +|+-+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEe
Confidence 46899999999999999999998863 555553
No 379
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.87 E-value=4.4 Score=33.78 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.++-|.|+ |.+|+.+++.|.++ +.+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 57999999 99999999999987 57766664
No 380
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=76.87 E-value=2.6 Score=38.12 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDD 27 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~ 27 (265)
..+|||+|+|.+|+-+++-|..+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 5799999999999999999998864
No 381
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.87 E-value=4.3 Score=29.98 Aligned_cols=30 Identities=30% Similarity=0.655 Sum_probs=23.5
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|-|+|+|.+|+.+++.|.+ .+.+++.|-..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECC
Confidence 5689999999999999998 45677777654
No 382
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.78 E-value=11 Score=35.97 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|.|..|..++++|.++. .++. +.|.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG-ARLR-VADT 38 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC-CEEE-EEcC
Confidence 358999999999999999999885 5654 3443
No 383
>PRK07877 hypothetical protein; Provisional
Probab=76.63 E-value=2.1 Score=42.74 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=53.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc----cChhhhhhheeecccCCcccccceeeeCCceE-EECC-EEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF----ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL-LFGE-KPV 76 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g-~~~ 76 (265)
..||+|+|+| +|..++..|....-+--..++|.- .+.++..| ..+..|..+ ..+... .+ .+|. -.+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~---~~~diG~~K-v~~a~~---~l~~inp~i~v 178 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPA---GVFDLGVNK-AVVAAR---RIAELDPYLPV 178 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccC---ChhhcccHH-HHHHHH---HHHHHCCCCEE
Confidence 4689999999 899999999876422333444431 11222111 011122221 100000 00 0111 122
Q ss_pred EEEe----cCCCCCCCcccccccEEEEecCCcccHHhHH-HHHhCCCC
Q 024565 77 TVFG----VRNPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (265)
Q Consensus 77 ~~~~----~~~~~~~~~~~~~~DvV~~at~~~~~~~~~~-~~~~~G~~ 119 (265)
..+. ..+.+++ ..++|+||+|+....++-.+. .+.+.|+.
T Consensus 179 ~~~~~~i~~~n~~~~---l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 179 EVFTDGLTEDNVDAF---LDGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred EEEeccCCHHHHHHH---hcCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 2322 1122233 157999999999988876664 55678874
No 384
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.40 E-value=10 Score=33.93 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.5
Q ss_pred EEEEEccChhHHHHHHHHHc-CCCeEEEEEe
Q 024565 5 KIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~ 34 (265)
+|.|+|+|.+|..++.++.. ....+++++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 79999999999998887775 4445555543
No 385
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.30 E-value=3.8 Score=34.13 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||+|+|+|-+|..++..|.... +.-+.+.|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 578999999999999999999874 654555554
No 386
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=76.23 E-value=15 Score=28.71 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=20.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~ 31 (265)
-.+|.|+|- ..+|+.+..+|.++ +..+.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~-gatV~ 56 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRD-GATVY 56 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEE
Confidence 357888888 88888888888765 34443
No 387
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.10 E-value=15 Score=34.29 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|.|+|+|.+|+..++.|.+.. .+++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~~ 34 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTVN 34 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence 57999999889999999999875 665443
No 388
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=76.01 E-value=9.6 Score=38.69 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.3
Q ss_pred CCc-cEEEEEccChhHHHH-HHHHHcCCCeEEEEEecc
Q 024565 1 MGK-VKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~-i~vgI~G~G~~G~~l-~~~L~~~p~~el~~v~~~ 36 (265)
|++ .+|.|+|.|..|... +++|.++. .++. ++|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V~-~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSVS-GSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeEE-EECC
Confidence 443 469999999999998 88888774 6654 4554
No 389
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.77 E-value=2.3 Score=38.31 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.7
Q ss_pred cEEEEEccChhHHHHHHHHHcC
Q 024565 4 VKIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~ 25 (265)
.+|||+|+|+||+.+++.|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 6899999999999999988753
No 390
>PRK09897 hypothetical protein; Provisional
Probab=75.72 E-value=3.7 Score=39.55 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~~ 36 (265)
|.+|+|||+|..|..++..|.++ ..++| .|.++
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V-~lfEp 34 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSI-SIFEQ 34 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcE-EEEec
Confidence 37999999999999999999865 33453 34444
No 391
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.70 E-value=3.1 Score=35.81 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=23.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~ 32 (265)
|++|+||+|++|.-+.+.|.++. .++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~ 28 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVG 28 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEE
Confidence 47999999999999999999885 55543
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.57 E-value=5.3 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
..||.|+|+|.+|...++.+...+ ++++..-
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d 50 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPD 50 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEecc
Confidence 579999999999999999999996 7765553
No 393
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.55 E-value=17 Score=33.79 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=24.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.+|.|+|.|..|+..+++|.++. .++.+ .|
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D 36 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-ID 36 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-Ec
Confidence 47999999999999999888774 56543 44
No 394
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=75.45 E-value=4.3 Score=34.52 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
++|-|.|+ |.+|+.+++.|.++ ..++.+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 47999999 99999999999999 5777777654
No 395
>PRK06184 hypothetical protein; Provisional
Probab=75.36 E-value=4 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|.+.+|.|||+|..|..++..|.++. ++++-+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~G-i~v~vi 32 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRG-VSFRLI 32 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEE
Confidence 77889999999999999999998874 665444
No 396
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=75.14 E-value=4.1 Score=38.48 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
..+|+|||+|..|...++.|.+.. ++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEE
Confidence 479999999999999999998764 555433
No 397
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=75.06 E-value=5.4 Score=33.07 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=24.2
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|-|.|+ |++|..+++.|.+.. .+++.+...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 579999 999999999999885 455556554
No 398
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.01 E-value=7.8 Score=37.95 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+|-|+|+|++|+.+++.|.++. .+++.|-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID 430 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLE 430 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEE
Confidence 47999999999999999998763 6666554
No 399
>PRK06847 hypothetical protein; Provisional
Probab=74.93 E-value=4.4 Score=36.60 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=25.1
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~-~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|+ +.+|.|||+|..|..++..|.++ +++++-+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~ 33 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLV 33 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 54 46899999999999999999876 3664433
No 400
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=74.85 E-value=6.5 Score=36.77 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCC--CeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~ 36 (265)
.|+-|+|+|..|.++++.+.++| +++++++.+.
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd 160 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDD 160 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeC
Confidence 57999999999999999998876 4889998875
No 401
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.78 E-value=13 Score=35.04 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.||.|+|+|..|+..+++|.+ +.++ .+.|.
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~--g~~v-~v~D~ 36 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN--KYDV-IVYDD 36 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC--CCEE-EEECC
Confidence 589999999999999999984 5665 45553
No 402
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=74.62 E-value=4.3 Score=37.31 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|+..+|.|+|+|.+|..++-.|.++ +++++-+
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~vi 33 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKES-DLRIAVI 33 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhC-CCEEEEE
Confidence 3356899999999999999998876 5775433
No 403
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.48 E-value=17 Score=32.05 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024565 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
.+|.|+|- ..+|+-++.+|.++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~ 181 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE 181 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC
Confidence 57888888 88888888888765
No 404
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.47 E-value=9 Score=34.45 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=22.9
Q ss_pred ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 92 ~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
...|++|+|++...+.+.+-.+++.|=. +++
T Consensus 241 ~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vl 271 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVTIRAAIKATRSGGT-VVL 271 (354)
T ss_pred cCCCeEEEccCchHHHHHHHHHhccCCE-EEE
Confidence 3489999999999888877766665432 444
No 405
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.23 E-value=8.6 Score=33.93 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.++.|+|+|-+++.++..|.++.--+++-++.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57999999999999999999886345555554
No 406
>PRK14982 acyl-ACP reductase; Provisional
Probab=74.14 E-value=5.4 Score=36.18 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=23.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDV-ELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~-el~~v 33 (265)
..+|.|+|+ |.+|+.+++.|.++.++ +++.+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv 187 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLV 187 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE
Confidence 468999999 99999999999854233 44444
No 407
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=74.05 E-value=4.4 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+++|.|+|+|.+|..++-+|.++. ++++-+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~ 31 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLL 31 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 578999999999999999999886 665444
No 408
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=73.90 E-value=5 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v 33 (265)
+..|.|||+|.+|..++..|.+. |+.+++-+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~ll 33 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVL 33 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEE
Confidence 47999999999999999999875 56665443
No 409
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=73.88 E-value=27 Score=28.08 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=19.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~ 31 (265)
-.+|.|+|. +.+|+-+..+|.++ +..+.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~-~atVt 64 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNK-GATVT 64 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHT-T-EEE
T ss_pred CCEEEEECCcCCCChHHHHHHHhC-CCeEE
Confidence 368999999 88999999988887 35443
No 410
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=73.88 E-value=4.8 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=26.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
++|-|.|+ |++|+.+++.|.++. .++.++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 37999999 999999999999885 57766654
No 411
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=73.81 E-value=3.3 Score=37.28 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccccC-hhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
..+-|.|+ ||.|+.+++.|..+. ... ++..++.. .+.+...| +.....| +...+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs~~kl~~l~~~L--G~~~~~~--------------------p~~~p 62 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRSSAKLDALRASL--GPEAAVF--------------------PLGVP 62 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC-Cch-hhccCCHHHHHHHHHhc--Ccccccc--------------------CCCCH
Confidence 46889999 999999999999873 322 45544321 22222111 1111111 11100
Q ss_pred CCCCCCCcccccccEEEEecCCcc--cHHhHHHHHhCCCCeEEEcCC
Q 024565 82 RNPEEIPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~at~~~~--~~~~~~~~~~~G~~~vvis~~ 126 (265)
...+++ ..++++|+.|.++++ ...+++.++.+|..-..|++.
T Consensus 63 ~~~~~~---~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 63 AALEAM---ASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred HHHHHH---HhcceEEEeccccccccccHHHHHHHHhCCCeeecccc
Confidence 112223 367899999999875 445778888888755556544
No 412
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=73.74 E-value=4.7 Score=36.09 Aligned_cols=32 Identities=38% Similarity=0.439 Sum_probs=25.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+||-|.|+ |++|+.+++.|.++. .+++.+.++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEec
Confidence 68999999 999999999999874 444444443
No 413
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=73.73 E-value=7.3 Score=33.54 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=30.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
-.||+|-|+|.+|..+++.|.+. +..+++|.|..
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~ 65 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSS 65 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 46899999999999999999988 59999997753
No 414
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.68 E-value=6.4 Score=33.05 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+..++-|.|+ |.+|+++++.|.++. .+++.+.++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC
Confidence 44578999999 999999999999885 566554443
No 415
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=73.60 E-value=4.6 Score=35.53 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v 33 (265)
|||-|.|+ |++|+.+++.|.++. +++++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 38999999 999999999998775 44444
No 416
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=73.56 E-value=4.6 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=21.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+.||+|||+|..|...++.|.+. +++++..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~-g~~~~~f 30 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEE-GLEVTCF 30 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHT-T-EEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCeEE
Confidence 36999999999999999999887 5887644
No 417
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=73.56 E-value=6.3 Score=36.93 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCC--CeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~ 36 (265)
.|+.|+|+|..|.++++.+.+++ +++++++.+.
T Consensus 129 ~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd 163 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDD 163 (451)
T ss_pred CcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeC
Confidence 57999999999999999998876 4888888875
No 418
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=73.31 E-value=4.9 Score=36.51 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=24.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++|.|+|+|.+|..++..|.++. ++++-+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G-~~v~l~ 30 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG-IKTTIF 30 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC-CeEEEe
Confidence 478999999999999999998764 665433
No 419
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=73.21 E-value=7.1 Score=34.31 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=26.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.++.|+|+|-+|+.++..|.+.. ++-+.|+.++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G-~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLG-VTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 57999999999999999998774 5545555553
No 420
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.16 E-value=5.1 Score=38.30 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.8
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.+.+|.|||||..|...+|.|.+.. ++++..=+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G-~~V~VLEA 46 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFG-FDVLVLEA 46 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC-CceEEEec
Confidence 4579999999999999999999874 76554433
No 421
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.15 E-value=17 Score=34.00 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
.|.|+|.|.+|+.++++|.+.. .++. ++|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPFA-VMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeEE-EEeC
Confidence 5899999999999999999875 5543 4553
No 422
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=73.09 E-value=3.3 Score=37.64 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el 30 (265)
++||+|||.|..|...+.+|..+-++.|
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTL 35 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTL 35 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEE
Confidence 6899999999999999999998877755
No 423
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=73.09 E-value=6.4 Score=35.36 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.+||-|.|+ |++|+.+++.|.++. .+|+++..
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 479999999 999999999999885 67776643
No 424
>PLN02778 3,5-epimerase/4-reductase
Probab=72.95 E-value=4.2 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~ 31 (265)
++||-|.|+ |++|..+++.|.++. .+++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 579999999 999999999998874 4554
No 425
>PRK05868 hypothetical protein; Validated
Probab=72.84 E-value=4.9 Score=36.60 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=23.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|.+|.|+|+|..|..++..|.++ +++++-+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G~~v~vi 30 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-GYSVTMV 30 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 47999999999999999988776 3664433
No 426
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.72 E-value=22 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=20.1
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVEL 30 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el 30 (265)
.+|.|+|. ..+|+-++.+|.++ +..+
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~-gAtV 184 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA-GASV 184 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCEE
Confidence 57889999 58999999888765 3444
No 427
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=72.65 E-value=5.4 Score=35.37 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||-|.|+ |.+|+.+++.|.+.. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 47999999 999999999998774 6777664
No 428
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=72.52 E-value=8 Score=36.29 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p--~~el~~v~~~ 36 (265)
+.|+.|+|+|..|+++++.+.+++ +++++++.|.
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd 160 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDT 160 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeC
Confidence 357999999999999999998775 4788888875
No 429
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=72.50 E-value=5.3 Score=36.43 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v 33 (265)
|.+|.|+|+|..|..++..|.++ ++++++-+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~li 32 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVV 32 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEE
Confidence 37899999999999999999987 46776544
No 430
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.44 E-value=5 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
|||.|+|+|++|+.+++.|.+. +.+++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 4899999999999999999876 46777664
No 431
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=72.44 E-value=5.4 Score=36.23 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
..+|.|||+|.+|..++..|.++ +++++-+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~-G~~v~li 36 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA-GASVALV 36 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCeEEEE
Confidence 35799999999999999999877 4775544
No 432
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=72.27 E-value=5.7 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=24.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
-.+|+|+|+|.+|+.+++.|.... ++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 368999999999999999998764 675443
No 433
>PTZ00188 adrenodoxin reductase; Provisional
Probab=72.19 E-value=5.9 Score=37.79 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=22.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el 30 (265)
..||+|||+|..|...++.|+.+.+.++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~V 66 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKV 66 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeE
Confidence 4799999999999999986665445553
No 434
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=72.18 E-value=6.8 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.++|.|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 457999999 999999999999874 67766654
No 435
>PRK07023 short chain dehydrogenase; Provisional
Probab=72.11 E-value=6.6 Score=32.97 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 68999999 999999999999874 7776654
No 436
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=72.05 E-value=6.9 Score=35.73 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.4
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
++.++-|.|. |++|+.+++.|.+.....-+.+.|.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~ 38 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDK 38 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEecc
Confidence 4678999999 9999999999998864444455554
No 437
>PRK07208 hypothetical protein; Provisional
Probab=71.83 E-value=5.2 Score=37.61 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|++.+|.|||+|..|...+..|.+. +++++-+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~ 33 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVL 33 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEE
Confidence 4567899999999999999999876 3554433
No 438
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=71.82 E-value=5.8 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
||.|||+|..|...+..|.+. +.++.-|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEE
Confidence 689999999999999999944 5887777
No 439
>PLN02214 cinnamoyl-CoA reductase
Probab=71.76 E-value=7.1 Score=35.03 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+++|-|.|+ |++|+.+++.|.++. .+++++..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 468999999 999999999999874 67776654
No 440
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=71.76 E-value=6.5 Score=35.02 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=26.0
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRD-DVELVAVN 34 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~ 34 (265)
+.++|-|.|+ |.+|+.+++.|.++. ..+++.+.
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4578999999 999999999999873 35655443
No 441
>PRK12827 short chain dehydrogenase; Provisional
Probab=71.67 E-value=6.9 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=26.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
.+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 478999999 999999999999885 5666654
No 442
>PRK07589 ornithine cyclodeaminase; Validated
Probab=71.53 E-value=5.2 Score=36.34 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=28.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+++|+|+|..++..++++..--.++-+.|.+++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~ 163 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDID 163 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCC
Confidence 5799999999999999988765458878888775
No 443
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=71.43 E-value=5 Score=37.72 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=26.1
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024565 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~ 34 (265)
++|+|+|+|..|...+..|.++ |+++++-.=
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE 32 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFE 32 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEe
Confidence 5899999999999999999876 777776553
No 444
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.43 E-value=6 Score=33.49 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=27.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.-..+.|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 469999999999999999999874 655566654
No 445
>PLN02206 UDP-glucuronate decarboxylase
Probab=71.39 E-value=5.7 Score=37.32 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
-+||-|.|+ |++|+.+++.|.++. .+|.++.
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 378999999 999999999999874 6777664
No 446
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.16 E-value=5.4 Score=36.78 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|||.|+|.||+|....-.|+++. -+++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~v 29 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCV 29 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 58999999999999999888874 566666
No 447
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=70.96 E-value=5.1 Score=34.85 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=24.9
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEe
Q 024565 5 KIGINGF-GRIGRLVARVILQRD-DVELVAVN 34 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p-~~el~~v~ 34 (265)
||-|.|+ |.+|+.+++.|.++. +.+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999 999999999998763 57777664
No 448
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=70.86 E-value=12 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-||.|+|+|.+|...++.+.... .. +.+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~-V~v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AI-VRAFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CE-EEEEeC
Confidence 58999999999999999988874 45 444444
No 449
>PLN02852 ferredoxin-NADP+ reductase
Probab=70.67 E-value=6.4 Score=37.55 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHc-CCCeEEEEEe
Q 024565 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~-~p~~el~~v~ 34 (265)
..||+|||+|..|...++.|.+ +++.+++-+-
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E 58 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIE 58 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4689999999999999999985 3567655443
No 450
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.66 E-value=23 Score=31.24 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=16.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024565 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
.+|.|+|- ..+|+-+..+|.++
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~ 180 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE 180 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC
Confidence 56788888 77888887777755
No 451
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.29 E-value=11 Score=32.61 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeE-EEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~e-l~~v 33 (265)
-+|.|+|+|.+|...++++... +++ ++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~ 151 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA-GAARVVAA 151 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 3789999999999998887766 465 4444
No 452
>PRK06182 short chain dehydrogenase; Validated
Probab=70.15 E-value=8.9 Score=32.87 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|++.++-|.|+ |.+|+++++.|.+.. .+|+.+..
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r 35 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG-YTVYGAAR 35 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 66678999999 999999999998774 67766543
No 453
>PRK06914 short chain dehydrogenase; Provisional
Probab=70.07 E-value=9.1 Score=32.87 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|+..++-|.|+ |.+|+.+++.|.++ +.+++.+...
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRN 36 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCC
Confidence 66667899999 99999999999987 4777776543
No 454
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.07 E-value=6.7 Score=36.78 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
++||-|.|+ |++|+.+++.|.+.. .+++.+.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 578999999 999999999999874 6766653
No 455
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=69.69 E-value=6.5 Score=38.84 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~-p~~el~~v~ 34 (265)
.+||-|.|+ |++|+.+++.|.++ ++.+++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 479999999 99999999999876 467877664
No 456
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=69.39 E-value=7.1 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+.+|.|+|+|.+|..++..|.++ +++++-+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~-G~~v~li 35 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA-GLSVALV 35 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCEEEEE
Confidence 46899999999999999998876 4664433
No 457
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.38 E-value=6.9 Score=34.43 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|.|||+|..|..++..|.++. ++++-+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-~~v~i~ 30 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-IDVTII 30 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-CEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-cccccc
Confidence 58999999999999999999884 664433
No 458
>PRK07045 putative monooxygenase; Reviewed
Probab=69.32 E-value=6.9 Score=35.64 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=24.9
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 2 ~~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
++++|.|+|+|..|..++..|.+. +++++-+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~ 34 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVV 34 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEE
Confidence 357999999999999999988876 4665444
No 459
>PRK06753 hypothetical protein; Provisional
Probab=69.29 E-value=6.8 Score=35.35 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
+||.|+|+|..|..++..|.++ +++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~ 27 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-GHEVK 27 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEE
Confidence 4899999999999999999876 46643
No 460
>PRK06180 short chain dehydrogenase; Provisional
Probab=69.22 E-value=9 Score=33.00 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+.++-|.|+ |.+|+.+++.|.++ +.+++.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 467999999 99999999999887 477766654
No 461
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=69.15 E-value=7 Score=34.21 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.1
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|-|.|+ |++|+.+++.|.++. .+++.+.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 679999 999999999999885 566677665
No 462
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.13 E-value=21 Score=31.50 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=21.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~ 31 (265)
.+|.|+|. |.+|+.++.+|.+.. ..++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g-atVt 187 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN-ATVT 187 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC-CEEE
Confidence 58999999 569999999998764 4433
No 463
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.03 E-value=7.3 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.9
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+|-|.|+ |++|+.+++.|.+. +.++.++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence 4899999 99999999999987 5677777643
No 464
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.61 E-value=6.4 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=26.2
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v~~ 35 (265)
+||.|+|+|..|...++.|.++ ++.+++-|..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~ 33 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEK 33 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC
Confidence 4899999999999999998875 5677776653
No 465
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=68.52 E-value=7.5 Score=35.65 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=23.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
|+|.|||+|.+|...+..|.++. .+|+-+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g-~~V~vl 29 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG-HEVTVI 29 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEE
Confidence 38999999999999999998773 554433
No 466
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=68.46 E-value=6.6 Score=33.85 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.7
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
||.|.|+ |++|+.+++.|.++ +.++..+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCC
Confidence 5889999 99999999999887 467666643
No 467
>PRK07588 hypothetical protein; Provisional
Probab=68.33 E-value=6.7 Score=35.74 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
++|.|||+|..|..++..|.++ +++++-+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G~~v~v~ 29 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-GHEPTLI 29 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCceEEE
Confidence 4899999999999999999877 4665443
No 468
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=68.26 E-value=6.9 Score=37.32 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-p~~el~~v 33 (265)
+..|.|||+|-+|..+++.|.+. |+.+++-+
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~Vl 36 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMF 36 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 46899999999999999999865 76665444
No 469
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.17 E-value=30 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024565 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
.+|.|+|- ..+|+-+..+|.++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~ 181 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE 181 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC
Confidence 57788888 88888888777755
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=68.05 E-value=9.2 Score=34.27 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.7
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
+.+||-|.|+ |++|..+++.|.+.. .+|+++.
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 4478999999 999999999999874 6776654
No 471
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.03 E-value=9.4 Score=31.82 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
+.++-|.|+ |.+|.++++.|.++ +.+++.+.++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r 38 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDI 38 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 468999999 99999999999877 4777666343
No 472
>PLN02686 cinnamoyl-CoA reductase
Probab=67.66 E-value=9.4 Score=34.70 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
|++++|-|-|+ |.+|+.+++.|.++ +.++..+.+.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~ 86 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDT 86 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 34678999999 99999999999987 4677666543
No 473
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=67.52 E-value=6.5 Score=36.12 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|||.++|+|.+|+.++..+..+.+.+++.|.-
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~ 32 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDV 32 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEEC
Confidence 48999999999997766565555678777763
No 474
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.46 E-value=22 Score=33.30 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=24.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
||.|+|+|..|...++.|.+.. .++. +.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EECC
Confidence 7999999999999999999875 5544 4554
No 475
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=67.44 E-value=22 Score=31.99 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
-+|.|+|.|.+|..+++++... +++++.+.+.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~ 213 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS 213 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 3688998899999999887766 4676666543
No 476
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=67.40 E-value=11 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.1
Q ss_pred cEEEEEccChhHHHHHH
Q 024565 4 VKIGINGFGRIGRLVAR 20 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~ 20 (265)
+||+|+|+|.+|..+.-
T Consensus 1 ~KIaIIGaGs~G~a~a~ 17 (423)
T cd05297 1 IKIAFIGAGSVVFTKNL 17 (423)
T ss_pred CeEEEECCChHHhHHHH
Confidence 58999999999987543
No 477
>PRK12829 short chain dehydrogenase; Provisional
Probab=67.32 E-value=9.7 Score=32.20 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.0
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 2 ~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+..++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDV 43 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 3578999999 999999999999885 56665553
No 478
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=67.07 E-value=7.9 Score=34.58 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCC
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDD 27 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~ 27 (265)
|||-|.|+ |.+|..+++.|.++..
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC
Confidence 48999999 9999999999998753
No 479
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=67.05 E-value=27 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..+|.|+|.|-+|..=+++|.+-. .+++.++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~ 44 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPE 44 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCC
Confidence 468999999999999999998774 555555443
No 480
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.97 E-value=33 Score=30.48 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024565 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~ 25 (265)
.+|.|+|- ..+|+-+..+|.++
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~ 183 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE 183 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC
Confidence 46777777 77777777777655
No 481
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.96 E-value=11 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=26.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~~ 36 (265)
..++-|.|+ |.+|+.+++.|.++ +.+++.+...
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~ 38 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ-GANVVINYAS 38 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 368999999 99999999999977 4676555543
No 482
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.91 E-value=11 Score=31.90 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=25.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~ 34 (265)
..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~ 38 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG-AAVAIAD 38 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 467999999 999999999999885 5766554
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.71 E-value=11 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=25.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
.++-|.|+ |.+|+++++.|.++. .+++.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 68999999 999999999999884 67655543
No 484
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.11 E-value=41 Score=28.46 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=69.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p-~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 81 (265)
||||+|+..|.-|.+....+..+. .-++++|....... ..+-
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~------------------------------------~~fi- 43 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYPEEL------------------------------------PDFI- 43 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhccccceEEEEeccccc------------------------------------cchh-
Confidence 489999999999999999998653 12334443321000 0000
Q ss_pred CCCCCCCcccccccEEEEe-cCCcccHHhHHHHHhCCCCeEEEcCCCCCCceEEeeeccccccCCCC------eEEcCCC
Q 024565 82 RNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELN------IVSNASC 154 (265)
Q Consensus 82 ~~~~~~~~~~~~~DvV~~a-t~~~~~~~~~~~~~~~G~~~vvis~~~~~~~~~v~~vn~~~~~~~~~------~Va~p~C 154 (265)
.+|+++-=...++|+++-- ...+...++.+.+...|.+-+++.+..++ |+ +++|+.... ..--|.|
T Consensus 44 e~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~------g~-rkqL~~~~~~~g~e~~~p~p~C 116 (224)
T COG1810 44 EEPEDLLPKLPEADIVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPE------GL-RKQLKEFCEELGVEFEAPEPFC 116 (224)
T ss_pred hCHHHhcCCCCCCCEEEEeccCccHHHHHHHHHHhCCccEEEEecCCCh------hH-HHHHHHHhhhcceeeecCCccc
Confidence 1222220001478988876 55677778888888888776666444222 11 222221000 1223455
Q ss_pred chhhhH-hHHHHHHHhcCce
Q 024565 155 TTNCLA-PLAKVIHDKFGIV 173 (265)
Q Consensus 155 ~~ta~~-~~L~pL~~~~~i~ 173 (265)
.-.--. +.+..+.+.||-.
T Consensus 117 ~Le~~~~p~i~~F~e~FG~P 136 (224)
T COG1810 117 SLEPNENPHIDEFAERFGKP 136 (224)
T ss_pred cCCCCCChHHHHHHHHcCCc
Confidence 544444 7777888888743
No 485
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.02 E-value=28 Score=30.67 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=18.6
Q ss_pred ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 92 ~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
..+|+|+.|+|..- -.-....+.|+ +||
T Consensus 199 ~~ADIvI~AvGk~~--~i~~~~ik~ga--iVI 226 (282)
T PRK14182 199 GRADILVAAIGKAE--LVKGAWVKEGA--VVI 226 (282)
T ss_pred hhCCEEEEecCCcC--ccCHHHcCCCC--EEE
Confidence 46899999998532 12345567787 665
No 486
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=66.02 E-value=14 Score=32.94 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=49.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccccChhhhhhheeecccCCcccccceeeeCCceEEECCEEEEEEecC
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 82 (265)
-.+|+|||+|.=|......|..+. ++++ |.-+..+.. |. . ..++| ..++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSG-lnVi-iGlr~g~~s--------------~~-k--A~~dG---------f~V~--- 66 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSG-LNVI-IGLRKGSSS--------------WK-K--AKEDG---------FKVY--- 66 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcC-CcEE-EEecCCchh--------------HH-H--HHhcC---------CEee---
Confidence 368999999999999998888774 6632 222221111 00 0 11233 2233
Q ss_pred CCCCCCcccccccEEEEecCCcccHHhH----HHHHhCCC
Q 024565 83 NPEEIPWAETGAEYVVESTGVFTDKDKA----AAHLKGGA 118 (265)
Q Consensus 83 ~~~~~~~~~~~~DvV~~at~~~~~~~~~----~~~~~~G~ 118 (265)
++++. .+..|+|..-+|.....+.. ...++.|.
T Consensus 67 ~v~ea---~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~ 103 (338)
T COG0059 67 TVEEA---AKRADVVMILLPDEQQKEVYEKEIAPNLKEGA 103 (338)
T ss_pred cHHHH---hhcCCEEEEeCchhhHHHHHHHHhhhhhcCCc
Confidence 23322 25689999999987766654 46677786
No 487
>PLN02494 adenosylhomocysteinase
Probab=65.98 E-value=9.1 Score=36.26 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
.+|+|+|+|.+|+.+++.+... +++|+.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~ 283 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVT 283 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 6899999999999999999877 4675554
No 488
>PRK07340 ornithine cyclodeaminase; Validated
Probab=65.72 E-value=9.4 Score=33.94 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=28.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
.+++|+|+|.+|+.+++.+..-..++-+.|.++.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 6899999999999999999763336778888774
No 489
>PRK07577 short chain dehydrogenase; Provisional
Probab=65.45 E-value=13 Score=30.81 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|...++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIAR 35 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 55568999999 999999999999875 67766653
No 490
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=65.39 E-value=12 Score=34.13 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=26.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|++|||+|.|..|+.++..+.+. ++++..+..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l-G~~v~~~d~ 33 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL-GYKVIVLDP 33 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeC
Confidence 46899999999999999988877 488766643
No 491
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=65.29 E-value=11 Score=30.45 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccc
Q 024565 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~~~ 37 (265)
++.|+|+|..|+++++.|.++ ++++++..|..
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~~ 32 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDDN 32 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence 478999999999999999865 68999988763
No 492
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=64.97 E-value=28 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEEccChhHHHHHHHHHcCCCe-EEEEE
Q 024565 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (265)
Q Consensus 5 ~vgI~G~G~~G~~l~~~L~~~p~~-el~~v 33 (265)
+|.|.|+|.+|..++.++... ++ +++++
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~ 222 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAA-GASQVVAV 222 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCcEEEE
Confidence 789999999999998877766 46 35444
No 493
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=64.92 E-value=12 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
|+|-|.|+ |.+|..+++.|.++. .+++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence 47899999 999999999999874 67665543
No 494
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=64.82 E-value=9.4 Score=34.89 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v 33 (265)
+.+|.|+|+|..|..++..|.++ +++++-+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~ 31 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVL 31 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEE
Confidence 58999999999999999988876 4665444
No 495
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=64.81 E-value=9.2 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=24.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-----CCeEEEEE
Q 024565 3 KVKIGINGFGRIGRLVARVILQR-----DDVELVAV 33 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~-----p~~el~~v 33 (265)
|.+|.|||+|..|...++.|.+. ++++++-+
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vl 36 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILV 36 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEE
Confidence 36899999999999999999874 23555544
No 496
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=64.58 E-value=8.8 Score=35.48 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.8
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQR-DDVELV 31 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~-p~~el~ 31 (265)
+||+|||+|..|...++.|.++ ++.+++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~ 29 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADIT 29 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEE
Confidence 4799999999999999999986 334444
No 497
>PRK14851 hypothetical protein; Provisional
Probab=64.25 E-value=8.5 Score=38.29 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
..||+|+|+|-+|..++..|.... +--..+.|
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD 74 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG-IGRFHIAD 74 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEc
Confidence 468999999999999999998774 44444554
No 498
>PRK09291 short chain dehydrogenase; Provisional
Probab=64.22 E-value=14 Score=31.18 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024565 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~i~vgI~G~-G~~G~~l~~~L~~~p~~el~~v~~ 35 (265)
+.++-|.|+ |.+|+.+++.|.++. .+++++..
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 357999999 999999999999874 77776654
No 499
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.19 E-value=34 Score=30.38 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=18.8
Q ss_pred ccccEEEEecCCcccHHhHHHHHhCCCCeEEE
Q 024565 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 92 ~~~DvV~~at~~~~~~~~~~~~~~~G~~~vvi 123 (265)
..+|+|+-|.|... -.-+..++.|. +|+
T Consensus 205 ~~ADIvI~Avg~~~--li~~~~vk~Ga--vVI 232 (295)
T PRK14174 205 RQADILIAAIGKAR--FITADMVKPGA--VVI 232 (295)
T ss_pred HhCCEEEEecCccC--ccCHHHcCCCC--EEE
Confidence 56899999997641 13345568887 555
No 500
>PRK06475 salicylate hydroxylase; Provisional
Probab=63.98 E-value=9.5 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=22.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024565 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 i~vgI~G~G~~G~~l~~~L~~~p~~el~ 31 (265)
-||.|+|+|..|..++.+|.++ ++++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~ 29 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVT 29 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEE
Confidence 6899999999999999988876 46543
Done!