Query 024566
Match_columns 265
No_of_seqs 249 out of 1463
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 2.7E-18 9.3E-23 122.2 3.3 88 18-106 2-91 (94)
2 1wd2_A Ariadne-1 protein homol 99.7 4.5E-18 1.5E-22 109.5 2.1 39 179-217 4-45 (60)
3 2ct7_A Ring finger protein 31; 99.4 4.8E-15 1.6E-19 103.2 -2.1 75 89-169 3-81 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.3 2.2E-14 7.6E-19 98.2 -2.8 69 87-160 2-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.1 2.3E-11 7.7E-16 91.5 1.0 119 19-194 5-126 (133)
6 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.4E-15 90.8 5.3 133 17-194 14-150 (170)
7 2ct2_A Tripartite motif protei 98.9 1.3E-09 4.4E-14 75.9 4.9 67 15-88 9-75 (88)
8 2djb_A Polycomb group ring fin 98.8 6.6E-09 2.2E-13 69.5 6.3 60 17-89 11-70 (72)
9 2ecv_A Tripartite motif-contai 98.8 8.4E-09 2.9E-13 71.1 6.6 61 17-85 15-75 (85)
10 2ysl_A Tripartite motif-contai 98.8 5E-09 1.7E-13 70.2 5.0 57 17-84 16-72 (73)
11 2ecw_A Tripartite motif-contai 98.8 9.7E-09 3.3E-13 70.7 6.1 60 18-85 16-75 (85)
12 2ecy_A TNF receptor-associated 98.8 7E-09 2.4E-13 68.1 5.0 54 18-84 12-65 (66)
13 1g25_A CDK-activating kinase a 98.8 2.9E-09 9.9E-14 69.7 3.1 59 21-88 3-62 (65)
14 1jm7_A BRCA1, breast cancer ty 98.8 1.2E-08 4E-13 74.3 6.1 72 19-101 19-91 (112)
15 1rmd_A RAG1; V(D)J recombinati 98.8 6.2E-09 2.1E-13 76.4 4.6 84 19-126 21-104 (116)
16 2ecm_A Ring finger and CHY zin 98.7 6.4E-09 2.2E-13 65.6 3.1 52 19-80 3-54 (55)
17 3ng2_A RNF4, snurf, ring finge 98.7 9.1E-09 3.1E-13 68.4 3.8 60 18-87 7-69 (71)
18 3hct_A TNF receptor-associated 98.7 3.1E-08 1.1E-12 72.8 7.0 86 17-127 14-99 (118)
19 2egp_A Tripartite motif-contai 98.7 2.8E-09 9.5E-14 72.6 0.6 61 18-85 9-69 (79)
20 2ysj_A Tripartite motif-contai 98.7 3.1E-08 1E-12 64.3 5.6 47 17-72 16-62 (63)
21 2yur_A Retinoblastoma-binding 98.7 1.6E-08 5.5E-13 68.0 4.1 55 14-80 8-63 (74)
22 3ztg_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 71.0 3.7 50 18-79 10-60 (92)
23 1t1h_A Gspef-atpub14, armadill 98.6 2.9E-08 9.8E-13 67.4 4.7 66 19-97 6-72 (78)
24 2ea6_A Ring finger protein 4; 98.6 2.5E-08 8.5E-13 65.8 4.1 56 16-81 10-68 (69)
25 1e4u_A Transcriptional repress 98.6 3.1E-08 1E-12 67.2 4.5 58 18-84 8-65 (78)
26 2ect_A Ring finger protein 126 98.6 1.9E-08 6.4E-13 68.3 3.5 60 16-86 10-69 (78)
27 2xeu_A Ring finger protein 4; 98.6 1.7E-08 5.8E-13 65.6 2.7 58 20-87 2-62 (64)
28 3lrq_A E3 ubiquitin-protein li 98.6 5.1E-08 1.8E-12 69.5 5.2 57 19-87 20-76 (100)
29 2kiz_A E3 ubiquitin-protein li 98.6 5.9E-08 2E-12 64.1 5.1 55 16-81 9-63 (69)
30 3knv_A TNF receptor-associated 98.6 4.9E-09 1.7E-13 79.6 -0.4 92 17-126 27-120 (141)
31 2d8t_A Dactylidin, ring finger 98.6 1.5E-08 5.2E-13 67.5 1.8 57 16-86 10-66 (71)
32 2csy_A Zinc finger protein 183 98.6 6.9E-08 2.3E-12 66.0 5.0 50 17-80 11-60 (81)
33 2ecj_A Tripartite motif-contai 98.5 6.8E-08 2.3E-12 61.4 4.1 47 17-72 11-57 (58)
34 2ep4_A Ring finger protein 24; 98.5 6.7E-08 2.3E-12 64.8 3.6 54 17-81 11-64 (74)
35 2y43_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 70.2 1.9 53 19-84 20-72 (99)
36 2yu4_A E3 SUMO-protein ligase 98.5 1.6E-07 5.6E-12 66.0 5.1 61 18-84 4-66 (94)
37 3htk_C E3 SUMO-protein ligase 98.4 1.3E-07 4.4E-12 77.9 4.4 67 9-84 169-235 (267)
38 1iym_A EL5; ring-H2 finger, ub 98.4 5.6E-08 1.9E-12 61.1 1.7 51 19-80 3-54 (55)
39 3fl2_A E3 ubiquitin-protein li 98.4 1.1E-07 3.6E-12 70.6 3.2 50 19-81 50-99 (124)
40 1bor_A Transcription factor PM 98.4 4.1E-08 1.4E-12 62.2 0.7 48 18-82 3-50 (56)
41 1x4j_A Ring finger protein 38; 98.4 8.2E-08 2.8E-12 64.6 2.2 53 18-81 20-72 (75)
42 1v87_A Deltex protein 2; ring- 98.4 2.1E-07 7.3E-12 67.8 4.2 58 19-81 23-94 (114)
43 1z6u_A NP95-like ring finger p 98.3 6.7E-07 2.3E-11 68.5 5.6 50 20-82 77-126 (150)
44 2l0b_A E3 ubiquitin-protein li 98.3 2.6E-07 8.9E-12 64.6 2.8 53 18-81 37-89 (91)
45 2ecn_A Ring finger protein 141 98.3 5.7E-08 1.9E-12 64.4 -0.9 52 18-84 12-63 (70)
46 4ayc_A E3 ubiquitin-protein li 98.3 2.6E-07 8.7E-12 69.8 2.2 48 21-82 53-100 (138)
47 1chc_A Equine herpes virus-1 r 98.3 2.9E-07 9.8E-12 60.5 2.1 50 19-81 3-52 (68)
48 2kr4_A Ubiquitin conjugation f 98.3 1.1E-06 3.8E-11 60.5 5.1 52 18-83 11-62 (85)
49 2ckl_A Polycomb group ring fin 98.2 5.6E-07 1.9E-11 64.9 3.5 52 18-82 12-63 (108)
50 3l11_A E3 ubiquitin-protein li 98.2 2.4E-07 8.2E-12 67.7 1.2 52 17-81 11-62 (115)
51 2kre_A Ubiquitin conjugation f 98.2 1.3E-06 4.4E-11 62.1 4.2 52 18-83 26-77 (100)
52 1jm7_B BARD1, BRCA1-associated 98.2 5.7E-07 1.9E-11 65.9 2.3 50 19-84 20-70 (117)
53 1wgm_A Ubiquitin conjugation f 98.2 3E-06 1E-10 59.9 6.0 51 19-83 20-71 (98)
54 2ckl_B Ubiquitin ligase protei 98.2 1.3E-06 4.5E-11 67.9 4.0 51 19-81 52-102 (165)
55 2ecg_A Baculoviral IAP repeat- 98.0 1.2E-06 4E-11 58.9 1.2 45 19-81 23-68 (75)
56 2ecl_A Ring-box protein 2; RNF 98.0 1.1E-06 3.8E-11 59.9 0.7 56 18-83 12-78 (81)
57 4ic3_A E3 ubiquitin-protein li 97.9 7.1E-07 2.4E-11 59.8 -1.2 45 19-81 22-67 (74)
58 4ap4_A E3 ubiquitin ligase RNF 97.9 5.3E-06 1.8E-10 61.7 2.4 59 18-86 69-130 (133)
59 2ct7_A Ring finger protein 31; 97.8 9.8E-06 3.4E-10 55.8 3.2 41 180-220 24-68 (86)
60 2d8s_A Cellular modulator of i 97.8 2.6E-05 9E-10 52.8 4.7 56 18-83 12-72 (80)
61 3dpl_R Ring-box protein 1; ubi 97.8 1.3E-05 4.4E-10 57.4 3.0 54 19-82 35-102 (106)
62 2jmo_A Parkin; IBR, E3 ligase, 97.7 1.3E-05 4.4E-10 54.4 2.6 44 179-223 23-74 (80)
63 2ea5_A Cell growth regulator w 97.7 1.5E-05 5.1E-10 52.3 2.8 47 17-81 11-58 (68)
64 2c2l_A CHIP, carboxy terminus 97.7 1.7E-05 5.7E-10 66.6 3.5 53 18-83 205-257 (281)
65 2vje_B MDM4 protein; proto-onc 97.7 1.9E-05 6.5E-10 50.9 2.6 50 19-80 5-55 (63)
66 2vje_A E3 ubiquitin-protein li 97.7 1.6E-05 5.4E-10 51.5 2.1 50 19-80 6-56 (64)
67 2f42_A STIP1 homology and U-bo 97.7 3E-05 1E-09 60.7 3.7 53 18-83 103-155 (179)
68 2y1n_A E3 ubiquitin-protein li 97.6 3.3E-05 1.1E-09 67.5 4.0 51 21-84 332-382 (389)
69 2yho_A E3 ubiquitin-protein li 97.5 5.8E-06 2E-10 56.0 -2.0 46 19-82 16-62 (79)
70 2ct0_A Non-SMC element 1 homol 97.4 0.00016 5.4E-09 48.0 3.8 52 19-81 13-64 (74)
71 4a0k_B E3 ubiquitin-protein li 97.3 4E-05 1.4E-09 55.7 0.4 53 19-81 46-112 (117)
72 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.00079 2.7E-08 57.5 4.0 64 17-82 304-374 (381)
73 3t6p_A Baculoviral IAP repeat- 96.6 0.00027 9.4E-09 61.1 -0.5 45 19-81 293-338 (345)
74 1vyx_A ORF K3, K3RING; zinc-bi 96.4 0.0055 1.9E-07 38.7 4.8 52 18-81 3-59 (60)
75 2bay_A PRE-mRNA splicing facto 96.3 0.0028 9.6E-08 40.3 3.0 53 21-86 3-55 (61)
76 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0043 1.5E-07 43.6 3.2 26 132-157 69-95 (101)
77 1wd2_A Ariadne-1 protein homol 95.8 0.0052 1.8E-07 38.8 2.4 39 108-152 4-44 (60)
78 3vk6_A E3 ubiquitin-protein li 94.8 0.013 4.4E-07 40.7 2.1 48 22-81 2-49 (101)
79 2cs3_A Protein C14ORF4, MY039 94.8 0.036 1.2E-06 36.5 4.0 49 17-72 11-63 (93)
80 3nw0_A Non-structural maintena 93.2 0.086 3E-06 43.0 4.5 53 19-82 178-230 (238)
81 2jrp_A Putative cytoplasmic pr 89.9 0.25 8.5E-06 32.9 3.0 27 183-217 33-62 (81)
82 2k4x_A 30S ribosomal protein S 88.6 0.18 6.1E-06 31.0 1.5 29 180-208 17-46 (55)
83 3j20_Y 30S ribosomal protein S 88.2 0.23 7.7E-06 29.9 1.7 29 180-208 18-47 (50)
84 1pft_A TFIIB, PFTFIIBN; N-term 87.2 0.58 2E-05 27.9 3.2 29 180-208 4-34 (50)
85 1wfh_A Zinc finger (AN1-like) 86.8 0.68 2.3E-05 29.2 3.4 40 180-223 14-53 (64)
86 2jrp_A Putative cytoplasmic pr 86.5 0.49 1.7E-05 31.4 2.8 34 182-217 3-42 (81)
87 3lrq_A E3 ubiquitin-protein li 86.3 0.16 5.4E-06 35.3 0.3 32 181-217 22-54 (100)
88 1vq8_Z 50S ribosomal protein L 86.1 0.44 1.5E-05 31.9 2.4 31 179-209 25-56 (83)
89 3qt1_I DNA-directed RNA polyme 85.5 0.53 1.8E-05 34.6 2.8 36 107-144 21-56 (133)
90 1wg2_A Zinc finger (AN1-like) 84.1 1 3.5E-05 28.4 3.2 41 180-224 14-54 (64)
91 1wfl_A Zinc finger protein 216 83.9 1 3.5E-05 29.2 3.3 40 180-223 24-63 (74)
92 2ysj_A Tripartite motif-contai 83.6 0.21 7.2E-06 31.2 -0.1 33 180-217 19-51 (63)
93 1weo_A Cellulose synthase, cat 83.1 2.8 9.6E-05 28.2 5.2 53 19-80 14-69 (93)
94 1weo_A Cellulose synthase, cat 82.1 1.1 3.8E-05 30.1 3.0 59 111-198 17-75 (93)
95 2ysl_A Tripartite motif-contai 82.1 0.41 1.4E-05 30.7 0.9 34 180-218 19-52 (73)
96 2jr6_A UPF0434 protein NMA0874 80.5 1.2 4.2E-05 28.5 2.7 29 180-208 7-36 (68)
97 2yur_A Retinoblastoma-binding 80.4 1.1 3.6E-05 28.9 2.5 33 138-193 32-64 (74)
98 2ct2_A Tripartite motif protei 78.5 0.44 1.5E-05 31.7 0.1 37 180-217 14-50 (88)
99 3vk6_A E3 ubiquitin-protein li 78.5 0.74 2.5E-05 31.8 1.2 17 179-195 35-51 (101)
100 3h0g_I DNA-directed RNA polyme 77.8 1.6 5.4E-05 31.0 2.9 33 110-144 4-36 (113)
101 2jne_A Hypothetical protein YF 77.3 1.6 5.5E-05 29.8 2.6 35 181-217 32-72 (101)
102 1wfp_A Zinc finger (AN1-like) 77.0 2 7E-05 27.8 2.9 42 179-224 23-64 (74)
103 1wff_A Riken cDNA 2810002D23 p 76.2 2 7E-05 28.7 2.9 41 179-222 23-63 (85)
104 3ng2_A RNF4, snurf, ring finge 74.8 0.62 2.1E-05 29.6 0.0 38 180-217 9-48 (71)
105 2ckl_B Ubiquitin ligase protei 74.5 0.87 3E-05 34.5 0.8 31 182-217 55-86 (165)
106 2ckl_A Polycomb group ring fin 73.5 0.81 2.8E-05 32.0 0.4 32 181-217 15-47 (108)
107 2d8v_A Zinc finger FYVE domain 73.5 0.91 3.1E-05 28.7 0.6 35 17-56 4-39 (67)
108 3qt1_I DNA-directed RNA polyme 73.4 1.6 5.5E-05 32.0 2.0 33 176-208 19-56 (133)
109 1twf_I B12.6, DNA-directed RNA 72.8 2.1 7.1E-05 30.8 2.5 34 109-144 3-36 (122)
110 3fl2_A E3 ubiquitin-protein li 71.1 0.95 3.2E-05 32.5 0.3 31 182-217 53-83 (124)
111 2y43_A E3 ubiquitin-protein li 70.6 0.95 3.3E-05 31.0 0.2 33 181-218 22-55 (99)
112 4ayc_A E3 ubiquitin-protein li 70.5 1.1 3.8E-05 32.8 0.6 31 182-217 54-84 (138)
113 2ect_A Ring finger protein 126 70.1 1.9 6.4E-05 27.9 1.6 36 180-217 14-49 (78)
114 3knv_A TNF receptor-associated 69.0 0.97 3.3E-05 33.5 -0.1 32 181-217 31-62 (141)
115 2hf1_A Tetraacyldisaccharide-1 68.8 3.2 0.00011 26.5 2.4 28 181-208 8-36 (68)
116 3h0g_I DNA-directed RNA polyme 68.6 3.6 0.00012 29.1 2.9 28 181-208 4-36 (113)
117 2js4_A UPF0434 protein BB2007; 67.3 4.8 0.00017 25.8 3.0 29 180-208 7-36 (70)
118 2pk7_A Uncharacterized protein 66.9 4 0.00014 26.2 2.5 29 180-208 7-36 (69)
119 3nyb_B Protein AIR2; polya RNA 66.6 3.6 0.00012 27.4 2.4 58 142-224 5-66 (83)
120 3hct_A TNF receptor-associated 66.3 1.2 4E-05 31.7 -0.1 32 181-217 18-49 (118)
121 1twf_I B12.6, DNA-directed RNA 65.8 3.3 0.00011 29.7 2.3 29 180-208 3-36 (122)
122 3u5c_f 40S ribosomal protein S 65.3 3.4 0.00012 30.9 2.3 31 181-211 118-151 (152)
123 1jm7_B BARD1, BRCA1-associated 64.0 2.2 7.7E-05 30.1 1.1 36 181-221 22-59 (117)
124 3l11_A E3 ubiquitin-protein li 63.3 2.1 7.3E-05 30.1 0.8 32 182-218 16-47 (115)
125 1fre_A Nuclear factor XNF7; zi 63.1 5 0.00017 22.4 2.3 26 132-157 12-38 (42)
126 1z2q_A LM5-1; membrane protein 62.8 3.6 0.00012 27.3 1.9 38 17-54 17-54 (84)
127 1wii_A Hypothetical UPF0222 pr 62.7 4.2 0.00015 27.2 2.1 29 180-208 22-57 (85)
128 1vq8_Z 50S ribosomal protein L 62.6 5.9 0.0002 26.4 2.8 31 109-145 26-56 (83)
129 2yvr_A Transcription intermedi 62.0 2.9 9.8E-05 24.6 1.1 27 132-158 16-42 (50)
130 3na7_A HP0958; flagellar bioge 61.8 24 0.00082 28.6 7.1 18 84-101 169-186 (256)
131 3u5c_f 40S ribosomal protein S 61.5 3.8 0.00013 30.7 2.0 33 110-146 118-150 (152)
132 2jny_A Uncharacterized BCR; st 60.4 5.8 0.0002 25.2 2.4 29 180-208 9-38 (67)
133 3hcs_A TNF receptor-associated 58.1 2 7E-05 32.5 -0.1 32 181-217 18-49 (170)
134 2yw8_A RUN and FYVE domain-con 54.9 3.6 0.00012 27.2 0.7 37 18-54 16-52 (82)
135 3ddt_A E3 ubiquitin-protein li 54.3 4.6 0.00016 23.4 1.1 26 132-157 16-42 (48)
136 1z60_A TFIIH basal transcripti 54.1 4 0.00014 25.3 0.8 36 111-155 16-51 (59)
137 1dl6_A Transcription factor II 53.3 8.5 0.00029 23.6 2.2 27 180-206 10-38 (58)
138 2xzm_9 RPS31E; ribosome, trans 53.2 5.5 0.00019 31.0 1.6 28 181-209 113-142 (189)
139 2k5c_A Uncharacterized protein 52.0 4.7 0.00016 26.5 0.9 23 67-91 8-31 (95)
140 1twf_L ABC10-alpha, DNA-direct 52.0 4.7 0.00016 25.9 0.9 24 182-206 29-53 (70)
141 1x4w_A Hypothetical protein FL 51.9 3 0.0001 26.5 -0.0 43 180-223 14-56 (67)
142 2kpi_A Uncharacterized protein 51.5 12 0.0004 22.8 2.6 27 180-208 9-38 (56)
143 1gh9_A 8.3 kDa protein (gene M 51.4 6.6 0.00022 25.3 1.5 26 111-144 5-30 (71)
144 1joc_A EEA1, early endosomal a 50.8 4.1 0.00014 29.4 0.6 37 18-54 66-102 (125)
145 1wep_A PHF8; structural genomi 50.6 24 0.00081 22.9 4.3 63 18-86 9-71 (79)
146 3t7l_A Zinc finger FYVE domain 50.6 4.2 0.00015 27.4 0.6 37 18-54 17-53 (90)
147 3m7n_A Putative uncharacterize 50.3 8 0.00027 29.7 2.2 24 182-207 141-165 (179)
148 2did_A Tripartite motif protei 49.8 6.1 0.00021 23.4 1.2 27 132-158 17-44 (53)
149 2ko5_A Ring finger protein Z; 49.3 9.6 0.00033 25.9 2.1 48 19-82 26-74 (99)
150 1x4u_A Zinc finger, FYVE domai 49.1 4.8 0.00016 26.7 0.7 36 18-53 11-46 (84)
151 1x4v_A Hypothetical protein LO 48.0 9.3 0.00032 23.9 1.8 33 110-151 12-44 (63)
152 2xzm_6 RPS27E; ribosome, trans 47.4 9.3 0.00032 25.2 1.8 32 111-147 33-64 (81)
153 2csv_A Tripartite motif protei 46.9 6.9 0.00023 24.9 1.1 30 132-161 27-56 (72)
154 2lli_A Protein AIR2; RNA surve 46.0 14 0.00049 26.2 2.9 16 144-159 44-59 (124)
155 1wfe_A Riken cDNA 2310008M20 p 46.0 16 0.00054 24.4 2.8 33 110-151 25-57 (86)
156 2yrg_A Tripartite motif-contai 45.8 8.3 0.00029 23.5 1.4 27 132-158 23-50 (59)
157 3iz6_X 40S ribosomal protein S 45.3 11 0.00039 25.0 2.0 35 111-150 37-71 (86)
158 1wfk_A Zinc finger, FYVE domai 45.1 5.9 0.0002 26.6 0.6 36 18-53 6-41 (88)
159 1vfy_A Phosphatidylinositol-3- 45.0 5.6 0.00019 25.6 0.5 32 22-53 12-43 (73)
160 3mjh_B Early endosome antigen 44.8 4.8 0.00016 21.9 0.1 18 19-36 3-20 (34)
161 2dja_A Midline-2; tripartite m 43.4 8.3 0.00028 25.3 1.1 29 132-160 28-57 (84)
162 2d8u_A Ubiquitin ligase TRIM63 42.7 8.9 0.00031 23.6 1.2 28 132-159 18-46 (64)
163 3u5c_b RP61, YS20, 40S ribosom 42.6 8.2 0.00028 25.4 1.0 32 111-147 35-66 (82)
164 4esj_A Type-2 restriction enzy 42.5 5 0.00017 32.2 -0.1 38 109-148 33-70 (257)
165 1ee8_A MUTM (FPG) protein; bet 42.4 12 0.00039 30.8 2.1 26 181-206 235-263 (266)
166 2hu9_A MERP, mercuric transpor 41.4 4.4 0.00015 29.5 -0.6 44 69-124 3-49 (130)
167 2xzf_A Formamidopyrimidine-DNA 41.3 10 0.00036 31.1 1.6 25 182-206 243-270 (271)
168 2o35_A Hypothetical protein DU 41.1 12 0.00041 25.6 1.6 16 47-62 43-58 (105)
169 3fyb_A Protein of unknown func 40.6 12 0.00042 25.5 1.6 16 47-62 42-57 (104)
170 2akl_A PHNA-like protein PA012 40.2 11 0.00037 27.3 1.3 29 109-144 26-54 (138)
171 1joc_A EEA1, early endosomal a 40.2 21 0.0007 25.6 2.9 34 109-150 68-101 (125)
172 1k82_A Formamidopyrimidine-DNA 40.2 11 0.00038 30.9 1.6 24 182-205 241-267 (268)
173 3u6p_A Formamidopyrimidine-DNA 40.1 11 0.00038 31.0 1.6 24 182-205 246-272 (273)
174 1k3x_A Endonuclease VIII; hydr 39.8 11 0.00039 30.8 1.6 24 182-205 235-261 (262)
175 4a0k_B E3 ubiquitin-protein li 39.7 6.2 0.00021 28.1 0.0 25 194-218 74-98 (117)
176 3vth_A Hydrogenase maturation 36.5 25 0.00086 33.4 3.6 59 19-79 109-193 (761)
177 1y02_A CARP2, FYVE-ring finger 36.2 9.2 0.00031 27.3 0.5 39 18-56 16-54 (120)
178 2f9y_B Acetyl-coenzyme A carbo 35.3 6.7 0.00023 32.9 -0.4 31 178-208 21-53 (304)
179 1k81_A EIF-2-beta, probable tr 35.2 19 0.00064 19.6 1.5 25 183-207 2-30 (36)
180 2vpb_A Hpygo1, pygopus homolog 35.2 18 0.00062 22.6 1.7 37 18-54 5-42 (65)
181 2dlq_A GLI-kruppel family memb 35.1 1E+02 0.0034 20.6 6.2 93 19-144 5-104 (124)
182 4ayb_P DNA-directed RNA polyme 34.2 19 0.00066 21.0 1.5 26 117-144 8-33 (48)
183 1nui_A DNA primase/helicase; z 33.6 21 0.00072 28.7 2.3 22 182-206 15-41 (255)
184 1qxf_A GR2, 30S ribosomal prot 33.5 28 0.00095 21.9 2.3 32 111-147 8-39 (66)
185 3a1b_A DNA (cytosine-5)-methyl 33.0 22 0.00074 26.7 2.1 53 17-77 75-133 (159)
186 1wys_A Riken cDNA 2310008M20 p 31.3 36 0.0012 22.0 2.7 42 111-163 15-56 (75)
187 2apo_B Ribosome biogenesis pro 30.6 54 0.0018 20.2 3.2 35 69-105 20-54 (60)
188 2lbm_A Transcriptional regulat 30.2 32 0.0011 25.3 2.6 54 17-77 59-116 (142)
189 2yww_A Aspartate carbamoyltran 29.4 29 0.001 25.7 2.2 33 109-144 104-143 (149)
190 2y1n_A E3 ubiquitin-protein li 29.1 28 0.00096 30.2 2.4 33 180-217 331-363 (389)
191 3j20_W 30S ribosomal protein S 28.6 39 0.0013 21.0 2.4 31 111-146 16-46 (63)
192 1lv3_A Hypothetical protein YA 28.3 19 0.00064 22.9 0.9 14 179-192 7-20 (68)
193 3v43_A Histone acetyltransfera 28.1 57 0.0019 22.6 3.5 52 20-76 4-62 (112)
194 3ql9_A Transcriptional regulat 27.7 76 0.0026 22.8 4.2 51 18-76 54-109 (129)
195 2jx1_A Myelin transcription fa 26.8 28 0.00096 18.4 1.3 11 68-78 2-12 (31)
196 1we9_A PHD finger family prote 26.2 15 0.00053 22.6 0.2 35 18-52 3-37 (64)
197 2jyp_A Aragonite protein AP7; 26.2 31 0.0011 17.9 1.3 28 17-48 5-32 (36)
198 2egm_A Tripartite motif-contai 25.6 10 0.00034 23.0 -0.8 25 132-156 27-52 (57)
199 2ri7_A Nucleosome-remodeling f 25.3 10 0.00035 28.7 -0.9 78 18-101 5-82 (174)
200 3a43_A HYPD, hydrogenase nicke 25.3 77 0.0026 23.0 3.9 37 88-126 39-84 (139)
201 2kdx_A HYPA, hydrogenase/ureas 25.2 55 0.0019 22.9 3.0 47 88-142 41-98 (119)
202 1qf8_A Casein kinase II; casei 25.1 1E+02 0.0035 23.5 4.7 37 107-143 103-143 (182)
203 3h0g_L DNA-directed RNA polyme 25.0 27 0.00093 21.8 1.2 11 181-191 38-48 (63)
204 2k16_A Transcription initiatio 24.9 53 0.0018 20.8 2.7 37 16-53 13-49 (75)
205 3zyq_A Hepatocyte growth facto 24.9 16 0.00056 29.0 0.2 34 21-54 164-197 (226)
206 1dvp_A HRS, hepatocyte growth 24.8 15 0.00051 29.1 -0.1 34 21-54 161-194 (220)
207 3j21_g 50S ribosomal protein L 23.7 21 0.00071 21.3 0.4 11 180-190 13-23 (51)
208 2k2d_A Ring finger and CHY zin 22.9 30 0.001 22.6 1.1 25 111-141 38-62 (79)
209 3jyw_9 60S ribosomal protein L 22.8 36 0.0012 21.8 1.4 27 180-206 25-52 (72)
210 3v2d_5 50S ribosomal protein L 22.8 38 0.0013 20.8 1.5 14 179-192 28-41 (60)
211 3i2d_A E3 SUMO-protein ligase 22.0 34 0.0011 29.5 1.5 64 13-85 241-304 (371)
212 3w0f_A Endonuclease 8-like 3; 21.9 47 0.0016 27.5 2.4 25 182-206 252-281 (287)
213 2pv0_B DNA (cytosine-5)-methyl 21.7 46 0.0016 28.8 2.3 36 17-56 89-126 (386)
214 3j21_i 50S ribosomal protein L 21.4 41 0.0014 22.2 1.5 29 180-208 34-63 (83)
215 1pg5_B Aspartate carbamoyltran 21.3 55 0.0019 24.7 2.4 36 109-144 113-153 (168)
216 2kvh_A Zinc finger and BTB dom 20.4 42 0.0014 15.3 1.2 11 134-144 3-13 (27)
217 2a20_A Regulating synaptic mem 20.1 38 0.0013 20.8 1.0 21 134-154 25-45 (62)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.71 E-value=2.7e-18 Score=122.24 Aligned_cols=88 Identities=18% Similarity=0.479 Sum_probs=76.1
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCC--CCccCccCCCChhHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHN--LDPFACEPVIPASLFSK 95 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--l~~~~i~~~l~~~~~~~ 95 (265)
+.+.++|+||++++..+.. +.+.+|+|.||.+||++|++.+|.+|...+++||.++|+.. ++++.++.+|+++++++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~k 80 (94)
T 1wim_A 2 SSGSSGCKLCLGEYPVEQM-TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQR 80 (94)
T ss_dssp CCSBCCCSSSCCCCBGGGE-EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHH
T ss_pred CCCCcCCcccCcccccccc-eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHH
Confidence 3467899999999876554 33458999999999999999999876667899999999999 99999999999999999
Q ss_pred HHHHHHHHhhc
Q 024566 96 WCDVLCEDYVL 106 (265)
Q Consensus 96 ~~~~~~~~~~~ 106 (265)
|.+++.+.+++
T Consensus 81 y~~~~~~~~v~ 91 (94)
T 1wim_A 81 YKKLQFERSGP 91 (94)
T ss_dssp HHHHHHHSSCS
T ss_pred HHHHHHHhhhc
Confidence 99988887764
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.69 E-value=4.5e-18 Score=109.46 Aligned_cols=39 Identities=31% Similarity=0.916 Sum_probs=37.1
Q ss_pred CCcccCCCCCceeeecCCCceeEee---cCCceeeccCcccc
Q 024566 179 MKWARCPACGHCVERKDGCSVVMCR---CNTRFCYECGRKIS 217 (265)
Q Consensus 179 ~~~k~CP~C~~~iek~~GCnhm~C~---C~~~FC~~C~~~~~ 217 (265)
.++|+||+|+++|||++|||||+|+ |+++|||+|+++|.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 5789999999999999999999995 99999999999986
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.42 E-value=4.8e-15 Score=103.16 Aligned_cols=75 Identities=29% Similarity=0.616 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHHhhc-CCCccccCCcCcccceeccccccCCcCeeeCCCccccccccccccc---CCCCCChhHHhc
Q 024566 89 PASLFSKWCDVLCEDYVL-GFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKW---HAGYRCEESRNL 164 (265)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~ 164 (265)
+++++++|++++.+.++. +++++||| +|+++++.+.. ...+.|+.|+..||+.|+.+| |.|.+|+++++|
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 346777888888888884 56778999 89999977653 567999999999999999999 999999999999
Q ss_pred hhhch
Q 024566 165 RDQND 169 (265)
Q Consensus 165 ~~~~d 169 (265)
.++++
T Consensus 77 ~~~n~ 81 (86)
T 2ct7_A 77 KRMNS 81 (86)
T ss_dssp HHHHT
T ss_pred HHhCc
Confidence 87654
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.35 E-value=2.2e-14 Score=98.22 Aligned_cols=69 Identities=25% Similarity=0.548 Sum_probs=60.8
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCccccCCcCcccceeccccccCCcCeeeCC-----CcccccccccccccCCCCCChh
Q 024566 87 VIPASLFSKWCDVLCEDYVLGFERSYCPNTNCMALVVNECERSGKVKKTQCP-----NCKQWFCFQCKLKWHAGYRCEE 160 (265)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~ 160 (265)
+|+++++++|++++.+.++.....+|||.|+|+.++..+.. ...+.|+ .|++.||+.|+.+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 57888999999999888886666999999999999987653 5679998 9999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=2.3e-11 Score=91.52 Aligned_cols=119 Identities=22% Similarity=0.563 Sum_probs=80.3
Q ss_pred Cccccccccccccccc---ccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHH
Q 024566 19 GSSFTCEICIEPMAAS---KKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSK 95 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~ 95 (265)
.+.++|+||++.+.++ ......++|||.||.+|+.+|+.. ...||. |+..+....+..+.-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~i------ 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIYI------ 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECBC------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCcccccccccc------
Confidence 4578999999998655 111235899999999999999862 238999 999988766554311
Q ss_pred HHHHHHHHhhcCCCccccCCcCcccceeccccccCCcCeeeCCCcccccccccccccCCCCCChhHHhchhhchHHHHHH
Q 024566 96 WCDVLCEDYVLGFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQL 175 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~ 175 (265)
..+...||- |...+...... ........|++.||..|...|.
T Consensus 69 -----------~~~~~~C~i--C~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~---------------------- 110 (133)
T 4ap4_A 69 -----------GSGTVSCPI--CMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDSL---------------------- 110 (133)
T ss_dssp -----------SSSSCBCTT--TCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHHH----------------------
T ss_pred -----------CCCCCCCCC--CCCcccccccc---CcceEeCCCCChhhHHHHHHHH----------------------
Confidence 234566773 76655432111 1222344799999999965442
Q ss_pred HhcCCcccCCCCCceeeec
Q 024566 176 VERMKWARCPACGHCVERK 194 (265)
Q Consensus 176 ~~~~~~k~CP~C~~~iek~ 194 (265)
+ ..+.||.|+..+.++
T Consensus 111 -~--~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 -K--NANTCPTCRKKINHK 126 (133)
T ss_dssp -H--HCSBCTTTCCBCCGG
T ss_pred -H--cCCCCCCCCCcCChh
Confidence 1 136999999998865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.05 E-value=1.6e-10 Score=90.84 Aligned_cols=133 Identities=21% Similarity=0.440 Sum_probs=84.2
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHHH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKW 96 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 96 (265)
.-.+.+.|+||++.+.++. .++|||.||.+|+..++.... .+||. |+..+....+. ....+++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv----~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~~~~- 76 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV----QTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR- 76 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH-
T ss_pred CCCCCCCCCCCChhhcCcE----ECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhh---hhHHHHH-
Confidence 3456789999999997664 379999999999999997531 28999 99888775432 2222221
Q ss_pred HHHHHHHhhcCCCccccCCcCcccceecccccc----CCcCeeeCCCcccccccccccccCCCCCChhHHhchhhchHHH
Q 024566 97 CDVLCEDYVLGFERSYCPNTNCMALVVNECERS----GKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVF 172 (265)
Q Consensus 97 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~----~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~ 172 (265)
.+. .-.++||+.+|+..+....... -.-..+.|+.|+..+ .+....+|....|.
T Consensus 77 -------~i~-~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~------------- 134 (170)
T 3hcs_A 77 -------EIL-SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCP------------- 134 (170)
T ss_dssp -------HHH-TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCT-------------
T ss_pred -------HHh-hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCC-------------
Confidence 111 3458899999999887655321 013456676666554 22333333332332
Q ss_pred HHHHhcCCcccCCCCCceeeec
Q 024566 173 GQLVERMKWARCPACGHCVERK 194 (265)
Q Consensus 173 ~~~~~~~~~k~CP~C~~~iek~ 194 (265)
.....||.|+..+...
T Consensus 135 ------~r~~~C~~C~~~~~~~ 150 (170)
T 3hcs_A 135 ------RRQVSCDNCAASMAFE 150 (170)
T ss_dssp ------TCEEECTTTCCEEEGG
T ss_pred ------CCCeECCCCCCccCHH
Confidence 2446688887777643
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=75.85 Aligned_cols=67 Identities=16% Similarity=0.435 Sum_probs=50.3
Q ss_pred cCCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCC
Q 024566 15 KGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVI 88 (265)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 88 (265)
.....+..+|+||++.+.+.......++|||.||.+|+..|+... .....||. |+..+....+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTSE
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHHH
Confidence 334466789999999987633222357999999999999999853 23579999 99988877665543
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=6.6e-09 Score=69.48 Aligned_cols=60 Identities=22% Similarity=0.423 Sum_probs=47.2
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIP 89 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~ 89 (265)
...+...|+||++.+.++.. +.+|+|.||..|+..|+.. ...||. |+..+...++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~~ 70 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATT---ITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGPS 70 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEE---CSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCE---ECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccCC
Confidence 34567899999999876543 3599999999999999974 248999 999988876655443
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=8.4e-09 Score=71.05 Aligned_cols=61 Identities=26% Similarity=0.602 Sum_probs=48.4
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCcc
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (265)
.-.+...|+||++.+.++. .++|+|.||.+|+..|+......+ ....||. |+..+..+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSMLDK--GESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHHTT--SCCCCTT--TCCSSCSSSCC
T ss_pred HccCCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhcCC--CCCcCCC--CCCccCHHhcC
Confidence 3456789999999986543 479999999999999999876542 3679999 99988876544
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5e-09 Score=70.17 Aligned_cols=57 Identities=25% Similarity=0.538 Sum_probs=45.0
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
...+...|+||++.+.++. .++|+|.||.+|+..|+.. ......||. |+..+..+.+
T Consensus 16 ~~~~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPV----TIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEE----ECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeE----EcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccC
Confidence 3456789999999987544 3699999999999999861 234679999 9998877655
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=9.7e-09 Score=70.74 Aligned_cols=60 Identities=25% Similarity=0.517 Sum_probs=47.3
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCcc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (265)
-.+.+.|+||++.+..+. .++|+|.||..|+..|+...... .....||. |+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred CccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 456789999999986654 47899999999999999876532 34679999 99988776543
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=7e-09 Score=68.08 Aligned_cols=54 Identities=22% Similarity=0.636 Sum_probs=43.2
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
..+.+.|+||++.+.++. .++|||.||.+|+..|+. .....||. |+..+..+++
T Consensus 12 ~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK----QTECGHRFCESCMAALLS-------SSSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCC----CCSSSCCCCHHHHHHHHT-------TSSCCCTT--TCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCee----ECCCCCHHHHHHHHHHHH-------hCcCCCCC--CCcCCChhhc
Confidence 356789999999986554 379999999999999985 13458999 9998877553
No 13
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.9e-09 Score=69.74 Aligned_cols=59 Identities=19% Similarity=0.417 Sum_probs=44.4
Q ss_pred ccccccccc-cccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCC
Q 024566 21 SFTCEICIE-PMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVI 88 (265)
Q Consensus 21 ~~~C~IC~~-~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l 88 (265)
...|+||++ .+.++......++|||.||.+|+.+++.. ....||. |+..+....+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 578999999 66555432224799999999999999762 2468999 99999887765543
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.2e-08 Score=74.32 Aligned_cols=72 Identities=22% Similarity=0.610 Sum_probs=53.0
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCC-hhHHHHHH
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIP-ASLFSKWC 97 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~-~~~~~~~~ 97 (265)
.+...|+||++.+.++. .++|||.||..|+..|+... .....||. |+..+....+..... .++++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPV----STKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCC----BCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeE----ECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHH
Confidence 34679999999886554 37999999999999998732 23478999 999988876654332 35666666
Q ss_pred HHHH
Q 024566 98 DVLC 101 (265)
Q Consensus 98 ~~~~ 101 (265)
+.+.
T Consensus 88 ~~~~ 91 (112)
T 1jm7_A 88 KIIC 91 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 15
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.76 E-value=6.2e-09 Score=76.36 Aligned_cols=84 Identities=30% Similarity=0.558 Sum_probs=60.0
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHHHHH
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWCD 98 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 98 (265)
.+.+.|+||++.+.++. .++|||.||..|+..|+... ...||. |+..+....+...+ .. +.+
T Consensus 21 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~-~~----l~~ 82 (116)
T 1rmd_A 21 VKSISCQICEHILADPV----ETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV-KS----FLN 82 (116)
T ss_dssp HHHTBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC-HH----HHH
T ss_pred cCCCCCCCCCcHhcCcE----EcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH-HH----HHH
Confidence 34679999999987654 37999999999999999752 347999 99998887665431 11 111
Q ss_pred HHHHHhhcCCCccccCCcCcccceeccc
Q 024566 99 VLCEDYVLGFERSYCPNTNCMALVVNEC 126 (265)
Q Consensus 99 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 126 (265)
.+. .-.++||+.+|+..+....
T Consensus 83 ~i~------~l~v~C~~~gC~~~~~~~~ 104 (116)
T 1rmd_A 83 ILN------SLMVKCPAQDCNEEVSLEK 104 (116)
T ss_dssp HHH------HCEEECCSTTCCCEEEHHH
T ss_pred HHH------HhcCCCCCCCCcchhhHhH
Confidence 111 2347899989988876544
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.72 E-value=6.4e-09 Score=65.58 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=40.9
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.....|+||++.+.+.......++|+|.||.+|+..|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45688999999986533333468999999999999999853 57999 987764
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.71 E-value=9.1e-09 Score=68.45 Aligned_cols=60 Identities=20% Similarity=0.647 Sum_probs=46.4
Q ss_pred CCcccccccccccccccc---cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCC
Q 024566 18 GGSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (265)
..+...|+||++.+.++. .....++|+|.||.+|+..|+... ..||. |+..+....+..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheeec
Confidence 355789999999986541 122358999999999999998732 38999 9999988777654
No 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.70 E-value=3.1e-08 Score=72.81 Aligned_cols=86 Identities=23% Similarity=0.433 Sum_probs=61.1
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHHH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKW 96 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~ 96 (265)
.-.+.+.|+||++.+.++. .++|||.||..|+..|+...- ..||. |+..+....+. ....+++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~l~~- 76 (118)
T 3hct_A 14 PLESKYECPICLMALREAV----QTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR- 76 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH-
T ss_pred CCCCCCCCCcCChhhcCeE----ECCcCChhhHHHHHHHHhhCC-------CCCCC--CCCCcCHHhcc---cCHHHHH-
Confidence 3456789999999987654 378999999999999997531 28999 99888765432 2222221
Q ss_pred HHHHHHHhhcCCCccccCCcCcccceecccc
Q 024566 97 CDVLCEDYVLGFERSYCPNTNCMALVVNECE 127 (265)
Q Consensus 97 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 127 (265)
.+. .-.++||+.+|...+.....
T Consensus 77 -------~i~-~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 77 -------EIL-SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp -------HHH-TSEEECSSTTCCCEEEGGGS
T ss_pred -------HHc-cceeECCCCCCCCEEeeHHH
Confidence 111 34589999999988876554
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.68 E-value=2.8e-09 Score=72.57 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=46.2
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCcc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (265)
-.+...|+||++.+.++. .++|||.||.+|+..|+...... ......||. |+..+....+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL----SLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECSSCC----CCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred cccCCCCcCCCcccCCee----ECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 355789999999986554 37999999999999998754332 234679999 99888765443
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=64.30 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=37.0
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (265)
...+...|+||++.+.++. .++|||.||.+|+.+|+... .....||.
T Consensus 16 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPV----TIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCE----ECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred hCccCCCCCcCCchhCCeE----EeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 3456789999999987654 36999999999999999841 23568987
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=67.96 Aligned_cols=55 Identities=24% Similarity=0.536 Sum_probs=42.7
Q ss_pred ccCCCCcccccccccccccccccccccCC-CCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 14 EKGGGGSSFTCEICIEPMAASKKFKNRNL-CTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
+.....+.+.|+||++.+.++.. ++ |+|.||..|+..|+... ....||. |+..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~----~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVV----IPCCGNSYCDECIRTALLES------DEHTCPT--CHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEE----CSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeE----cCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcCC
Confidence 34445667999999999976543 67 99999999999999852 2468999 998643
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=71.03 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=40.5
Q ss_pred CCcccccccccccccccccccccCC-CCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNL-CTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNL 79 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 79 (265)
-.+.+.|+||++.+.++. .++ |||.||..|+..|+... ....||. |+..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~----~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV----VIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCE----ECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCce----ECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 356789999999987664 367 99999999999998732 2368999 99886
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.64 E-value=2.9e-08 Score=67.35 Aligned_cols=66 Identities=20% Similarity=0.416 Sum_probs=48.2
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCcc-CCCChhHHHHHH
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE-PVIPASLFSKWC 97 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~-~~l~~~~~~~~~ 97 (265)
.+.+.|+||++.+.++.. ++|||.||..|+..|+.. ....||. |+..+....+. ...-.++++.|.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~----~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVI----VSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSEEE----ETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCCEE----cCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 457899999999976643 689999999999999962 2468999 99988765443 222234455554
No 24
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.5e-08 Score=65.84 Aligned_cols=56 Identities=20% Similarity=0.622 Sum_probs=42.3
Q ss_pred CCCCcccccccccccccccc---cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 16 GGGGSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
........|+||++.+.++. ..+..++|+|.||.+|+..|+.. ...||. |+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccCc
Confidence 34466789999999986542 11235899999999999999974 237999 9987753
No 25
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.63 E-value=3.1e-08 Score=67.20 Aligned_cols=58 Identities=19% Similarity=0.411 Sum_probs=41.4
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
..+..+|+||++.+......+..++|||.||..|+.+++.. ....||. |+..+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 35578999999988432221112359999999999988641 2468999 9998876543
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.62 E-value=1.9e-08 Score=68.28 Aligned_cols=60 Identities=25% Similarity=0.577 Sum_probs=45.7
Q ss_pred CCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccC
Q 024566 16 GGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (265)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (265)
........|+||++.+...... ..++|+|.||..|+..|+.. ...||. |+..+....+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCSCSCC
T ss_pred ccCCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCcccCC
Confidence 3445678999999998655432 25789999999999999852 148999 999887766543
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.60 E-value=1.7e-08 Score=65.61 Aligned_cols=58 Identities=21% Similarity=0.664 Sum_probs=44.6
Q ss_pred cccccccccccccccc---cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCC
Q 024566 20 SSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (265)
Q Consensus 20 ~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (265)
+..+|+||++.+.++. .....++|||.||.+|+..|+.. ...||. |+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 4578999999986541 11235899999999999999974 238999 9999888766544
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.59 E-value=5.1e-08 Score=69.48 Aligned_cols=57 Identities=25% Similarity=0.631 Sum_probs=45.6
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPV 87 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~ 87 (265)
.+.+.|+||++.+.++.. .++|||.||..|+..|+... ...||. |+..+....+...
T Consensus 20 ~~~~~C~IC~~~~~~p~~---~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARL---CPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccCccc---cCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhh
Confidence 457899999999976542 38999999999999999853 158999 9999987665443
No 29
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=5.9e-08 Score=64.13 Aligned_cols=55 Identities=22% Similarity=0.620 Sum_probs=41.9
Q ss_pred CCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 16 GGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
........|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 3456678999999988544332 358999999999999999741 25999 9987755
No 30
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.58 E-value=4.9e-09 Score=79.59 Aligned_cols=92 Identities=17% Similarity=0.339 Sum_probs=59.7
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChh-HH-H
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPAS-LF-S 94 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~-~~-~ 94 (265)
.-.+.+.|+||++.+.++. .++|||.||..|+..|+.. ....||. |+..+..+....+++.+ ++ +
T Consensus 27 ~l~~~~~C~IC~~~~~~pv----~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d 93 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPF----QAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAFPD 93 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEE----ECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCEEC
T ss_pred cCCcCcCCCCCChhhcCcE----ECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhccc
Confidence 3456789999999987664 3799999999999999851 2358998 98766544332222211 11 0
Q ss_pred HHHHHHHHHhhcCCCccccCCcCcccceeccc
Q 024566 95 KWCDVLCEDYVLGFERSYCPNTNCMALVVNEC 126 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 126 (265)
... +..+. .-.++||+.+|...+....
T Consensus 94 ~~~----~~~i~-~L~v~Cpn~GC~~~~~l~~ 120 (141)
T 3knv_A 94 NAA----RREVE-SLPAVCPSDGCTWKGTLKE 120 (141)
T ss_dssp HHH----HHHHH-TSEEECCSTTCCCEEEHHH
T ss_pred HHH----HHHHc-ccccccCCCCCCCEeEHHH
Confidence 111 11121 3458999989988877654
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=67.49 Aligned_cols=57 Identities=18% Similarity=0.400 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccC
Q 024566 16 GGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (265)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (265)
....+...|+||++.+.++. .++|+|.||.+|+..|+.. ...||. |+..+....+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPV----SLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEE----EETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSC
T ss_pred ccCCCCCCCccCCcccCCCE----EccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccC
Confidence 34566789999999986553 3689999999999998752 258999 999887765543
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=6.9e-08 Score=65.98 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=41.1
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.....+.|+||++.+.++. .++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPV----VTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred cCCCCCCCcCCCchhcCee----EccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 3456789999999986653 4899999999999999973 347999 998886
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=6.8e-08 Score=61.42 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=36.0
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (265)
...+...|+||++.+.++. .++|+|.||.+|+..|+.. ......||.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~ 57 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPV----IIECGHNFCKACITRWWED-----LERDFPCPV 57 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCC----CCSSCCCCCHHHHHHHTTS-----SCCSCCCSC
T ss_pred ccccCCCCccCCcccCccE----eCCCCCccCHHHHHHHHHh-----cCCCCCCCC
Confidence 3456789999999987653 4799999999999999752 123468886
No 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.7e-08 Score=64.79 Aligned_cols=54 Identities=20% Similarity=0.570 Sum_probs=41.7
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
+......|+||++.+..+... ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCccccc
Confidence 345577999999998765543 246899999999999999742 27999 9987644
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.49 E-value=3.5e-08 Score=70.19 Aligned_cols=53 Identities=25% Similarity=0.636 Sum_probs=42.3
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
.+.+.|+||++.+.++.. ..+|||.||..|+..|+.. ...||. |+..+....+
T Consensus 20 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMI---IPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBCSSEEE---CTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGC
T ss_pred CCCCCcccCChhhCCcCE---ECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhC
Confidence 456899999999976543 3589999999999999862 258999 9998876543
No 36
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=66.03 Aligned_cols=61 Identities=34% Similarity=0.673 Sum_probs=47.6
Q ss_pred CCcccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCC-CCccCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHN-LDPFAC 84 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-l~~~~i 84 (265)
....+.|+||++.+.++.. + .|||.||+.|+..|+...-. ......||..+|... +....+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~----~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK----NKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE----ESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGGE
T ss_pred CCcEeECcCcCchhcCCEE----cCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhhC
Confidence 4567899999999987764 5 59999999999999986532 124578999999977 766443
No 37
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-07 Score=77.94 Aligned_cols=67 Identities=28% Similarity=0.492 Sum_probs=53.8
Q ss_pred CCcccccCCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 9 PNEYLEKGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
.++.+........+.|+||++.+.++.. ...|||.||+.|+..|+.. .....||..||+..+....+
T Consensus 169 dDDDI~v~~~~~el~CPIcl~~f~DPVt---s~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 169 DEDDLQIEGGKIELTCPITCKPYEAPLI---SRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSSCCCCCSSBCCSBCTTTSSBCSSEEE---ESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECGGGE
T ss_pred CCccceecCCceeeECcCccCcccCCee---eCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCchhhC
Confidence 4455666677889999999999988764 3689999999999999862 23478999999998877554
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.43 E-value=5.6e-08 Score=61.14 Aligned_cols=51 Identities=18% Similarity=0.604 Sum_probs=38.3
Q ss_pred CcccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.+..+|+||++++....... .+ .|+|.||.+|+..|+.. ...||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCE-ECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCCcCccCCccccCCCceE-ECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 34678999999987644333 35 49999999999999742 247999 987764
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=70.58 Aligned_cols=50 Identities=28% Similarity=0.773 Sum_probs=40.9
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
...+.|+||++.+.++. .++|||.||..|+..|+.. ....||. |+..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPI----TTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred ccCCCCCcCChHHcCcE----EeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 34578999999997654 3799999999999999971 2358999 9998866
No 40
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=4.1e-08 Score=62.16 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=38.2
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
+.+.+.|+||++.+.++. .++|+|.||..|+.. ....||. |+..+...
T Consensus 3 e~~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPK----LLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBCCS----CSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSCC
T ss_pred cccCCCceEeCCccCCeE----EcCCCCcccHHHHcc-----------CCCCCCc--CCcEeecC
Confidence 456789999999987653 488999999999766 2468999 99877653
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=8.2e-08 Score=64.57 Aligned_cols=53 Identities=19% Similarity=0.625 Sum_probs=41.7
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
..+...|+||++++...... ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 45668999999998765433 357899999999999998642 37999 9987765
No 42
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.39 E-value=2.1e-07 Score=67.78 Aligned_cols=58 Identities=22% Similarity=0.500 Sum_probs=42.1
Q ss_pred Ccccccccccccccccc--------------cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.....|+||++++..+. .....++|+|.||.+||..|+...-. .....||. |+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCTT--TCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCCC--CCCccCC
Confidence 34569999999985432 12225889999999999999964321 23568999 9987754
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.32 E-value=6.7e-07 Score=68.45 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=41.6
Q ss_pred cccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 20 SSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 20 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
+.+.|+||++.+.++. .++|+|.||..|+..|+.. ....||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~~pv----~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV----TTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCCE----EcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 4578999999987664 3899999999999999972 2458999 99988775
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.31 E-value=2.6e-07 Score=64.56 Aligned_cols=53 Identities=25% Similarity=0.596 Sum_probs=40.6
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
......|+||++.+...... ..++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 34567899999998654432 34789999999999999852 238999 9988764
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=5.7e-08 Score=64.40 Aligned_cols=52 Identities=27% Similarity=0.595 Sum_probs=40.8
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
..+...|+||++.+.+ ..++|+|.||.+|+..|+. ....||. |+..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccCCCc
Confidence 4557899999999865 2589999999999999875 2458998 9887765543
No 46
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.27 E-value=2.6e-07 Score=69.83 Aligned_cols=48 Identities=31% Similarity=0.814 Sum_probs=38.6
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
.+.|+||++.+.++. .++|||.||.+|+..|+.. ...||. |+..+...
T Consensus 53 ~~~C~iC~~~~~~~~----~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAV----TLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEE----EETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCCCE
T ss_pred cCCCcccCcccCCce----ECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCCCC
Confidence 468999999987654 4799999999999998751 347999 99887643
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.27 E-value=2.9e-07 Score=60.52 Aligned_cols=50 Identities=32% Similarity=0.702 Sum_probs=39.2
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.....|+||++.+.++.. .++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~---~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSM---ALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEE---ETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCCC
T ss_pred CCCCCCeeCCccccCCcE---ecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhHh
Confidence 345789999999865432 58999999999999998631 37999 9987753
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.26 E-value=1.1e-06 Score=60.51 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=43.2
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
-.+.+.|+||++.+.++.. ++|||.||+.|+..|+.. ...||. |+..+....
T Consensus 11 ~p~~~~CpI~~~~m~dPV~----~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVR----LPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGG
T ss_pred CchheECcccCchhcCCeE----CCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHh
Confidence 3567999999999987764 789999999999999973 247999 998887654
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.25 E-value=5.6e-07 Score=64.91 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=41.8
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
-.+.+.|+||++.+.++.. ..+|||.||..|+..|+.. ...||. |+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEE---ETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCE---eCCCCChhhHHHHHHHHHh--------CCcCcC--CCcccccc
Confidence 3567899999999976543 3599999999999999862 268999 99887654
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.23 E-value=2.4e-07 Score=67.66 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=41.1
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
...+.+.|+||++.+..+. .++|||.||..|+..|+.. ....||. |+..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPV----TLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCE----ECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCCCCCccCCcccCcee----EcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 3455789999999987654 3799999999999988741 2468999 9998764
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.19 E-value=1.3e-06 Score=62.10 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
-.+.+.|+||++.+.++.. ++|||.||+.|+..|+.. ...||. |+..+....
T Consensus 26 ~p~~~~CpI~~~~m~dPV~----~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVR----LPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEE----ETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTTS
T ss_pred CcHhhCCcCccCcccCCeE----CCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChhh
Confidence 3557999999999987764 779999999999999862 247999 998887643
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=5.7e-07 Score=65.89 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=40.6
Q ss_pred CcccccccccccccccccccccC-CCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
.+.+.|+||++.+.++.. + +|||.||..|+..|+. ..||. |+..+....+
T Consensus 20 ~~~~~C~IC~~~~~~pv~----~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~~~ 70 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVC----LGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQDL 70 (117)
T ss_dssp HHTTSCSSSCSCCSSCBC----CCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCSSC
T ss_pred hhCCCCCCCChHhhCccE----eCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccccc
Confidence 457899999999976543 5 9999999999998874 57999 9998865443
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.18 E-value=3e-06 Score=59.90 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=42.4
Q ss_pred CcccccccccccccccccccccCCCC-ChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCT-HPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
.+.+.|+||++.+.++.. ++|| |.||+.|+..|+.. ...||. |+..+....
T Consensus 20 p~~~~CpI~~~~m~dPV~----~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV----LPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE----CTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred cHhcCCcCccccccCCeE----CCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 457999999999987764 8899 99999999999973 237999 998887643
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.15 E-value=1.3e-06 Score=67.89 Aligned_cols=51 Identities=29% Similarity=0.804 Sum_probs=40.6
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
...+.|+||++.+.++.. .++|||.||..|+..|+.. ....||. |+..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMT---TKECLHRFCADCIITALRS-------GNKECPT--CRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEE---ETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCS
T ss_pred CCCCCCcccChHhhCcCE---eCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCCC
Confidence 345799999999976543 3599999999999999872 1457999 9988754
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.2e-06 Score=58.87 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=35.3
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.+...|+||++.+.++. .++|||. ||.+|+.. ...||. |+..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~----~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIV----FVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBC----CSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCCcCCCCCCCEE----EecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 45678999999885443 4899999 99999852 147999 9988755
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.1e-06 Score=59.91 Aligned_cols=56 Identities=20% Similarity=0.424 Sum_probs=40.3
Q ss_pred CCccccccccccccccc-----------ccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAAS-----------KKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~-----------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
+.+..+|+||++++.+. +....+..|+|.|+.+|+.+|+... -.||. |+..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~ 78 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQR 78 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchhh
Confidence 34567799999988541 1122345699999999999998621 28999 998876654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.93 E-value=7.1e-07 Score=59.79 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=36.1
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.+...|.||++.+.++. .++|||. ||.+|+..+ ..||. |+..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~----~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIV----FVPCGHLVTCKQCAEAV------------DKCPM--CYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEE----EETTCCBCCCHHHHTTC------------SBCTT--TCCBCSE
T ss_pred ccCCCCCCCCCCCCCEE----EcCCCChhHHHHhhhcC------------ccCCC--cCcCccC
Confidence 45679999999886543 4799999 999998765 58999 9988754
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.86 E-value=5.3e-06 Score=61.71 Aligned_cols=59 Identities=22% Similarity=0.687 Sum_probs=45.0
Q ss_pred CCcccccccccccccccc---cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccC
Q 024566 18 GGSSFTCEICIEPMAASK---KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (265)
+.....|+||++.+..+. .....++|+|.||..|+..|+... ..||. |+..+..+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhccee
Confidence 456788999999886531 111357899999999999999741 38999 999998876543
No 59
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.83 E-value=9.8e-06 Score=55.79 Aligned_cols=41 Identities=24% Similarity=0.621 Sum_probs=35.8
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCceeeccCccc---cCCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKI---SSGC 220 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~---~~g~ 220 (265)
+.+-||+|...+...++-..++| .|++.||+.|+.+| |.+-
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCC
Confidence 45669999999988888888999 69999999999999 7663
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=2.6e-05 Score=52.80 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=43.2
Q ss_pred CCcccccccccccccccccccccCCCC-----ChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCT-----HPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
..+...|.||++++.+...+ +++|. |.|+.+||.+|+... ....||. |+..+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeecCc
Confidence 34567899999988655444 47886 999999999999864 2358999 998876543
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.76 E-value=1.3e-05 Score=57.43 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=39.8
Q ss_pred Ccccccccccccccccc--------------cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 19 GSSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
.+...|+||++.+...- .....++|+|.|+..|+..|+.. ...||. |+..+...
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcceee
Confidence 35578999999986431 01234789999999999999862 247999 99876543
No 62
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.75 E-value=1.3e-05 Score=54.37 Aligned_cols=44 Identities=30% Similarity=0.664 Sum_probs=38.5
Q ss_pred CCcccCCC--CCceeeecCCCceeEe------ecCCceeeccCccccCCCCCC
Q 024566 179 MKWARCPA--CGHCVERKDGCSVVMC------RCNTRFCYECGRKISSGCSCQ 223 (265)
Q Consensus 179 ~~~k~CP~--C~~~iek~~GCnhm~C------~C~~~FC~~C~~~~~~g~~~~ 223 (265)
...+-||. |+..|...++.+.++| .|++.||+.|+..||. .++.
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECS 74 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Cccc
Confidence 45788998 9999999889999999 7999999999999987 5443
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=1.5e-05 Score=52.27 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=36.2
Q ss_pred CCCcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.+.+...|.||++...+. .+++|+|. ||.+|+.. .-.||. |+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 445578999999987532 25899999 99999883 137999 9987754
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.72 E-value=1.7e-05 Score=66.64 Aligned_cols=53 Identities=13% Similarity=-0.034 Sum_probs=42.7
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
....+.|+||++.+.++.. ++|||+||+.|+..|+... ...||. |+.+++...
T Consensus 205 ~~~~~~c~i~~~~~~dPv~----~~~gh~f~~~~i~~~~~~~-------~~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCI----TPSGITYDRKDIEEHLQRV-------GHFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEE----CSSCCEEETTHHHHHHHHT-------CSSCTT--TCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCCeE----CCCCCEECHHHHHHHHHHC-------CCCCcC--CCCCCchhc
Confidence 3467899999999987764 7899999999999999741 123999 999887654
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.69 E-value=1.9e-05 Score=50.93 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=37.5
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.....|.||++...+... ...+|||. ||.+|...+... .-+||. |+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~--~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNI--IHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEE--EETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCeEE--EecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 446789999998754432 13599998 999999987752 147999 998874
No 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.68 E-value=1.6e-05 Score=51.48 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=37.2
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.+..+|.||++...+... ..++|||. ||.+|+..+... .-.||. |+..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~--~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCI--VHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEE--EETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCCCCEEE--ECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 356689999998754431 12499999 899999988751 137999 998874
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.65 E-value=3e-05 Score=60.71 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=43.0
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFA 83 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 83 (265)
-...+.|+||++.+.+|.. ++|||+||+.|+..|+... + . .||. |+.+++...
T Consensus 103 ip~~f~CPI~~elm~DPV~----~~~Ghtfer~~I~~~l~~~---~---~-tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCI----TPSGITYDRKDIEEHLQRV---G---H-FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHT---C---S-BCTT--TCCBCCGGG
T ss_pred CcHhhcccCccccCCCCeE----CCCCCEECHHHHHHHHHhC---C---C-CCCC--CcCCCChhh
Confidence 3567999999999987764 7999999999999999742 1 1 6999 998887653
No 68
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.63 E-value=3.3e-05 Score=67.53 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=40.6
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCc
Q 024566 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFAC 84 (265)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i 84 (265)
...|+||++...++. .++|||.||..|+..|... ....||. |+..+....+
T Consensus 332 ~~~C~ICle~~~~pv----~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVK----IEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEE----EETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEEE
T ss_pred CCCCCccCcCCCCeE----EeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCcee
Confidence 479999999886543 4899999999999998873 1348999 9998876543
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.49 E-value=5.8e-06 Score=56.02 Aligned_cols=46 Identities=26% Similarity=0.686 Sum_probs=35.7
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
.+...|.||++...+.. +++|||. ||.+|+..+ ..||. |+..+...
T Consensus 16 ~~~~~C~IC~~~~~~~v----~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINST----FCPCGHTVCCESCAAQL------------QSCPV--CRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEE----EETTCBCCBCHHHHTTC------------SBCTT--TCCBCCEE
T ss_pred CCCCEeEEeCcccCcEE----EECCCCHHHHHHHHHhc------------CcCCC--CCchhhCe
Confidence 34578999999875432 4899999 999998743 28999 99887653
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00016 Score=48.02 Aligned_cols=52 Identities=23% Similarity=0.543 Sum_probs=40.6
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
....+|.||++.+.+... ...|+|.|...|+.+|+..+ ..-.||. |+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~------~~~~CP~--Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTC------SSCCCTT--TCSCCCS
T ss_pred CCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhc------CCCCCCC--CcCcCCC
Confidence 456799999999975543 35899999999999999632 2258999 9987754
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.31 E-value=4e-05 Score=55.74 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=1.3
Q ss_pred Ccccccccccccccccc--------------cccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASK--------------KFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.....|.||++++.... ..+..++|+|.|+..|+..|+.. ...||. |+..+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 112 (117)
T ss_dssp CCC--------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeee
Confidence 34478999999986421 11123589999999999999874 237998 9887643
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.84 E-value=0.00079 Score=57.50 Aligned_cols=64 Identities=16% Similarity=0.396 Sum_probs=45.1
Q ss_pred CCCccccccccccccccccccc----ccCCCCChhHHHHHHHHHHHHhhCCCCCc---ccCCCCCCCCCCCcc
Q 024566 17 GGGSSFTCEICIEPMAASKKFK----NRNLCTHPFCQDCIARYIQVKVQDDNTAK---IDCPGLDCKHNLDPF 82 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~---i~CP~~~C~~~l~~~ 82 (265)
.+....+|+|||+.+.+....+ ....|+|.|...|+..|+.+.-.....+. =.||. |+.+++-.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 3456789999999886523221 12479999999999999998654322222 36998 99987643
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.60 E-value=0.00027 Score=61.14 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=36.0
Q ss_pred CcccccccccccccccccccccCCCCCh-hHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHP-FCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
.+...|+||++.+.++. .++|||. ||..|+..+ ..||. |+..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v----~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVV----FIPCGHLVVCQECAPSL------------RKCPI--CRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEE----EETTCCEEECTTTGGGC------------SBCTT--TCCBCCE
T ss_pred cCCCCCCccCCcCCceE----EcCCCChhHhHHHHhcC------------CcCCC--CCCCccC
Confidence 34578999999886543 4799999 999998754 47999 9988754
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.38 E-value=0.0055 Score=38.73 Aligned_cols=52 Identities=15% Similarity=0.401 Sum_probs=37.8
Q ss_pred CCcccccccccccccccccccccCCCC--C---hhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCT--H---PFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
+.+...|-||+++..+ .+ ..+|. + .|..+||.+|+...- ...||. |+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~--~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--ER--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSC--CC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCCC
T ss_pred CCCCCEeEEeecCCCC--ce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeeec
Confidence 3556789999997532 23 36654 4 899999999997542 358999 9987643
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.29 E-value=0.0028 Score=40.27 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=40.4
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccC
Q 024566 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (265)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (265)
.+.|+|+++.+.++.. ...+||.|+++++.+|+... + +||. .+..|..+++..
T Consensus 3 ~~~CpIs~~~m~dPV~---~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL---SPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEE---ETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCEE---eCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChhhcEE
Confidence 4789999999987653 23899999999999999842 1 4998 777777765543
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.04 E-value=0.0043 Score=43.56 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.7
Q ss_pred cCeeeCCCccccccccccc-ccCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (265)
...++|..|+..+|..|.. ..|.++.
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~~H~ 95 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHRDHQ 95 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTSSSC
T ss_pred cceEECCCCCCccchhcCCCCCcCCCC
Confidence 5789999999999999986 6888875
No 77
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.78 E-value=0.0052 Score=38.85 Aligned_cols=39 Identities=28% Similarity=0.767 Sum_probs=32.9
Q ss_pred CCccccCCcCcccceeccccccCCcCeeeCCC--ccccccccccccc
Q 024566 108 FERSYCPNTNCMALVVNECERSGKVKKTQCPN--CKQWFCFQCKLKW 152 (265)
Q Consensus 108 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~ 152 (265)
.+.+.|| +|+..+..... -+.+.|.. |+..||+.|..+|
T Consensus 4 ~~~k~CP--~C~~~Iek~~G----CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGG----CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCS----CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ccceECc--CCCCeeEeCCC----CCcEEECCCCcCCEEeeCcCCCc
Confidence 4567898 59999877655 78999988 9999999999987
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.81 E-value=0.013 Score=40.67 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=33.0
Q ss_pred cccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCc
Q 024566 22 FTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDP 81 (265)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 81 (265)
..|.+|--++.. +..+.+|.|.||.+|...+....- =.||. |+..+..
T Consensus 2 hfC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBCSE
T ss_pred eecCccCCCeEE---EeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCeeee
Confidence 357788666532 223689999999999988876321 25887 8876543
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.76 E-value=0.036 Score=36.51 Aligned_cols=49 Identities=27% Similarity=0.715 Sum_probs=37.8
Q ss_pred CCCcccccccccccccccccccccCCC----CChhHHHHHHHHHHHHhhCCCCCcccCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLC----THPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C----~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (265)
.....+.|.+|.+.+.+.. | ..| .|.||..|-+.+|+.+-.. ..+.||.
T Consensus 11 ~~~a~l~CtlC~erLEdtH-F---VQCPsv~~HkFCFpCsr~sIk~q~~~---~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTH-F---VQCPSVPSHKFCFPCSRESIKAQGAT---GEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTT-S---EECSSCSSCEECHHHHHHHHHHHHSS---SCCCCTT
T ss_pred CCCCeeEeecchhhhccCc-e---eeCCCccCCeeeccccHHHHHhcCCC---CcEECCC
Confidence 3577899999999886432 3 444 6999999999999987543 5677885
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.24 E-value=0.086 Score=42.98 Aligned_cols=53 Identities=23% Similarity=0.507 Sum_probs=41.4
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
.....|.||.+-...... ...|+|.|...|+..|+.. .....||. |+..++.+
T Consensus 178 ~~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCCCC
Confidence 357899999998865543 3459999999999999863 34568998 99887665
No 81
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=89.88 E-value=0.25 Score=32.86 Aligned_cols=27 Identities=30% Similarity=0.643 Sum_probs=20.9
Q ss_pred cCCCCCceeeecCCCceeEe-ecC--CceeeccCcccc
Q 024566 183 RCPACGHCVERKDGCSVVMC-RCN--TRFCYECGRKIS 217 (265)
Q Consensus 183 ~CP~C~~~iek~~GCnhm~C-~C~--~~FC~~C~~~~~ 217 (265)
.||.|+.++++ | .|| ..||=.|++-++
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEee
Confidence 89999999987 7 477 458888877654
No 82
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=88.62 E-value=0.18 Score=31.04 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=21.4
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
..+.||+|+..+.-...-+.++| +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 35889999986553334478999 799875
No 83
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.22 E-value=0.23 Score=29.91 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=19.9
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
..+.||+|+..+.-...=+.+.| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 46889999984443322378899 798754
No 84
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.21 E-value=0.58 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=22.4
Q ss_pred CcccCCCCCc-eeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGH-CVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~-~iek~~GCnhm~C-~C~~~F 208 (265)
....||.|+. .+.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3568999998 7777777778999 588754
No 85
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.76 E-value=0.68 Score=29.21 Aligned_cols=40 Identities=33% Similarity=0.671 Sum_probs=32.4
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSCQ 223 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~~ 223 (265)
...+|..|+..+... -+.|+||..||-.-.-+-.|.|++.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~e~H~C~fD 53 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYPEVHGCTFD 53 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTTCSTTTTTCCCC
T ss_pred cCCcChhhCCccCcc----CEEeecCCEeccccCCcccCCCCch
Confidence 457899999988765 3899999999998887777777654
No 86
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=86.50 E-value=0.49 Score=31.42 Aligned_cols=34 Identities=29% Similarity=0.926 Sum_probs=27.2
Q ss_pred ccCCCCCceeeecCCCceeEe-ecCCc-----eeeccCcccc
Q 024566 182 ARCPACGHCVERKDGCSVVMC-RCNTR-----FCYECGRKIS 217 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C-~C~~~-----FC~~C~~~~~ 217 (265)
..||.|+..++.+++ +..| .|+.. ||-.|+++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHH
Confidence 579999999999888 6668 68744 7888888863
No 87
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.30 E-value=0.16 Score=35.30 Aligned_cols=32 Identities=25% Similarity=0.675 Sum_probs=26.6
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCceeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~ 217 (265)
.-.||-|...+. +-+++ .|||.||+.|...|-
T Consensus 22 ~~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 22 VFRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWL 54 (100)
T ss_dssp HTBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHH
T ss_pred CCCCccCCcccc-----CccccCCCCChhhHHHHHHHH
Confidence 457999998886 46787 799999999999873
No 88
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=86.11 E-value=0.44 Score=31.94 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=25.8
Q ss_pred CCcccCCCCCceeeecCCCceeEe-ecCCcee
Q 024566 179 MKWARCPACGHCVERKDGCSVVMC-RCNTRFC 209 (265)
Q Consensus 179 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC 209 (265)
...-.||+|+....+..+=..+.| .|++.|-
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 345789999999999888889999 6988764
No 89
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=85.45 E-value=0.53 Score=34.58 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCccccCCcCcccceeccccccCCcCeeeCCCccccc
Q 024566 107 GFERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 107 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
.....+|| .|++.+.+....+.....+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 45679999 6999998876544446788999888754
No 90
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=84.07 E-value=1 Score=28.40 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=32.3
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCCCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSCQT 224 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~~~ 224 (265)
...+|..|+..+... -+.|+||..||-.-.-+-.|.|++..
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~e~H~C~fDy 54 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYPEKHECSFDF 54 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSSTTTTCCCCC
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCccccCCCcch
Confidence 457899999887655 38999999999988877777776543
No 91
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=83.92 E-value=1 Score=29.22 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=31.9
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSCQ 223 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~~ 223 (265)
...+|..|+..+...+ +.|+||..||-.=.-+-.|.|++.
T Consensus 24 ~~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~e~H~C~fD 63 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYSDKHNCPYD 63 (74)
T ss_dssp CTTBCSSSCCBCGGGC----EECTTSCEECSSSCSTTTTTCCCC
T ss_pred cCCcChhhCCcccccC----eecCCCCEechhcCCCccCCCcch
Confidence 3468999999988764 899999999988777766776653
No 92
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.57 E-value=0.21 Score=31.17 Aligned_cols=33 Identities=27% Similarity=0.701 Sum_probs=25.9
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
....||-|...+.. .++-.||+.||+.|...|.
T Consensus 19 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 19 EEVICPICLDILQK-----PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHH
T ss_pred cCCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHH
Confidence 34689999887763 3444899999999999975
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.14 E-value=2.8 Score=28.17 Aligned_cols=53 Identities=26% Similarity=0.602 Sum_probs=38.4
Q ss_pred Cccccccccccccc---ccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCC
Q 024566 19 GSSFTCEICIEPMA---ASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLD 80 (265)
Q Consensus 19 ~~~~~C~IC~~~~~---~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 80 (265)
.....|.||-+++- +.+.|++...|+-..|+.|+..-. ++| .-.||. |+..+.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG---~q~Cpq--CktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REG---TQNCPQ--CKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTS---CSSCTT--TCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hcc---Cccccc--cCCccc
Confidence 34579999999854 334576677799999999976544 343 347998 997764
No 94
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.10 E-value=1.1 Score=30.09 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=39.7
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccccccccCCCCCChhHHhchhhchHHHHHHHhcCCcccCCCCCce
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQLVERMKWARCPACGHC 190 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~ 190 (265)
..|-. |+--+-.... ....+-|..|++..|..| .+|. .....+.||.|+.+
T Consensus 17 qiCqi--CGD~VG~~~~---Ge~FVAC~eC~FPvCrpC----------yEYE--------------rkeG~q~CpqCktr 67 (93)
T 1weo_A 17 QFCEI--CGDQIGLTVE---GDLFVACNECGFPACRPC----------YEYE--------------RREGTQNCPQCKTR 67 (93)
T ss_dssp CBCSS--SCCBCCBCSS---SSBCCSCSSSCCCCCHHH----------HHHH--------------HHTSCSSCTTTCCC
T ss_pred Ccccc--ccCccccCCC---CCEEEeeeccCChhhHHH----------HHHH--------------HhccCccccccCCc
Confidence 44543 6555544332 257899999999998865 3433 24578999999999
Q ss_pred eeecCCCc
Q 024566 191 VERKDGCS 198 (265)
Q Consensus 191 iek~~GCn 198 (265)
..+..|..
T Consensus 68 Ykr~kgsp 75 (93)
T 1weo_A 68 YKRLRGSP 75 (93)
T ss_dssp CCCCTTCC
T ss_pred cccccCCC
Confidence 98765543
No 95
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.10 E-value=0.41 Score=30.70 Aligned_cols=34 Identities=26% Similarity=0.657 Sum_probs=26.4
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCccccC
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISS 218 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 218 (265)
....||-|...+. +.++-.|||.||+.|...|..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred cCCEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 3468999998775 344448999999999999764
No 96
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=80.53 E-value=1.2 Score=28.49 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=23.7
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
.+-.||.|+..++-..+.+.++| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45789999999998888888888 577655
No 97
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=80.40 E-value=1.1 Score=28.94 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=22.2
Q ss_pred CCcccccccccccccCCCCCChhHHhchhhchHHHHHHHhcCCcccCCCCCceeee
Q 024566 138 PNCKQWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQLVERMKWARCPACGHCVER 193 (265)
Q Consensus 138 ~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek 193 (265)
+.|++.||..|-..| +.......||.|+..+.+
T Consensus 32 ~~CgH~fC~~Ci~~~-----------------------~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 32 PCCGNSYCDECIRTA-----------------------LLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SSSCCEECTTHHHHH-----------------------HHHSSSSCCSSSCCSSCC
T ss_pred CCCCCHHHHHHHHHH-----------------------HHhcCCCcCCCCCCcCCC
Confidence 348999999885432 222335789999987543
No 98
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.48 E-value=0.44 Score=31.74 Aligned_cols=37 Identities=19% Similarity=0.506 Sum_probs=26.2
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
....||-|...+..... .-+.-.|||.||+.|...|-
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 14 EVLECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp SCCBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHH
T ss_pred CCCCCccCCccccccCC-CeEECCCCChhhHHHHHHHH
Confidence 34679999887765421 12333799999999999873
No 99
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=78.47 E-value=0.74 Score=31.82 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.1
Q ss_pred CCcccCCCCCceeeecC
Q 024566 179 MKWARCPACGHCVERKD 195 (265)
Q Consensus 179 ~~~k~CP~C~~~iek~~ 195 (265)
...+.||.|+.+|++.+
T Consensus 35 ~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 35 KGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp TTCCBCTTTCCBCSEEE
T ss_pred ccCCCCcCcCCeeeeeE
Confidence 46799999999998653
No 100
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.77 E-value=1.6 Score=31.00 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=25.3
Q ss_pred ccccCCcCcccceeccccccCCcCeeeCCCccccc
Q 024566 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
..+|| .|++.+.+..........+.|..|++..
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 57899 6999998876543446789999998755
No 101
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.34 E-value=1.6 Score=29.83 Aligned_cols=35 Identities=26% Similarity=0.849 Sum_probs=29.1
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCc-----eeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTR-----FCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~-----FC~~C~~~~~ 217 (265)
...||.|+..++.++| +.+| .|+.. ||-.|+++..
T Consensus 32 ~~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecCC--EEECccccchhhccccCcchhhHHH
Confidence 3899999999999988 7789 69865 6889988853
No 102
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=76.98 E-value=2 Score=27.82 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=32.6
Q ss_pred CCcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCCCC
Q 024566 179 MKWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSCQT 224 (265)
Q Consensus 179 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~~~ 224 (265)
....+|..|+..+... -+.|+|+..||-.=.-+-.|.|++..
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy~e~H~C~fDy 64 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTHRYPESHECQFDF 64 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTTCSTTTSCCCSCT
T ss_pred ccCccchhhcCccccc----ceEeccCCEeccccCCCcCCCCcCch
Confidence 3457899999888766 38999999999887777667776543
No 103
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=76.23 E-value=2 Score=28.67 Aligned_cols=41 Identities=24% Similarity=0.577 Sum_probs=31.8
Q ss_pred CCcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCC
Q 024566 179 MKWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSC 222 (265)
Q Consensus 179 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~ 222 (265)
....+|..|+..+-.. +-+.|+||..||-.=.-+-.|.|++
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEECTTTCSTGGGTCCS
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEecccCCCccCCCCcc
Confidence 3457899999877654 3489999999998877776677765
No 104
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=74.79 E-value=0.62 Score=29.58 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=26.9
Q ss_pred CcccCCCCCceeeec--CCCceeEeecCCceeeccCcccc
Q 024566 180 KWARCPACGHCVERK--DGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 180 ~~k~CP~C~~~iek~--~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
....||-|...+... ++-..+.-.||+.||+.|...|.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 456899999887653 23222333799999999998874
No 105
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=74.48 E-value=0.87 Score=34.51 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=25.7
Q ss_pred ccCCCCCceeeecCCCceeEe-ecCCceeeccCcccc
Q 024566 182 ARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKIS 217 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~ 217 (265)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITAL 86 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHH
Confidence 479999888763 5777 799999999999873
No 106
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=73.52 E-value=0.81 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=26.1
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCceeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~ 217 (265)
.-.||-|...+. +.++- .|||.||+.|...|-
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHH
T ss_pred cCCCccCChHHh-----CcCEeCCCCChhhHHHHHHHH
Confidence 467999988875 35777 799999999998874
No 107
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=73.50 E-value=0.91 Score=28.69 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCCcccccccccccccccccccccCCC-CChhHHHHHHHHH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLC-THPFCQDCIARYI 56 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~ 56 (265)
++.+..-|.||.++-. + ..+.| +-.||..||+..-
T Consensus 4 ~~ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 4 GSSGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCCCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHHT
T ss_pred cCcCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHHc
Confidence 4567789999999852 2 26889 7899999999876
No 108
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=73.41 E-value=1.6 Score=31.97 Aligned_cols=33 Identities=12% Similarity=0.350 Sum_probs=23.7
Q ss_pred HhcCCcccCCCCCceeeec----CCCceeEe-ecCCce
Q 024566 176 VERMKWARCPACGHCVERK----DGCSVVMC-RCNTRF 208 (265)
Q Consensus 176 ~~~~~~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 208 (265)
+.....+-||.|+.++... .+.+.+.| .|+|.+
T Consensus 19 ~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 19 SHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp ---CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3445689999999987433 36788999 599976
No 109
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.78 E-value=2.1 Score=30.83 Aligned_cols=34 Identities=12% Similarity=0.374 Sum_probs=25.3
Q ss_pred CccccCCcCcccceeccccccCCcCeeeCCCccccc
Q 024566 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
...+|| .|++.+.+..........+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 457899 6999998775433335789999998754
No 110
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=71.05 E-value=0.95 Score=32.47 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=23.9
Q ss_pred ccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
-.||-|...+. +-++-.|||.||..|...|-
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHH
Confidence 57999988776 33444799999999988764
No 111
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=70.56 E-value=0.95 Score=30.99 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=25.9
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCceeeccCccccC
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKISS 218 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 218 (265)
.-.||-|...+.. -++- .|||.||+.|...|..
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHH
Confidence 3579999887753 5666 6999999999988753
No 112
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=70.51 E-value=1.1 Score=32.82 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=24.6
Q ss_pred ccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
-.||-|.-.+. +-++-.|||.||+.|...|.
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHH
Confidence 46999998774 23555799999999999875
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=70.07 E-value=1.9 Score=27.91 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=24.6
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
....||-|...+.... ..+.-.|++.||+.|...|.
T Consensus 14 ~~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 14 SGLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp SSCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHH
T ss_pred CCCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHH
Confidence 4568999987765332 11222589999999998874
No 114
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=68.98 E-value=0.97 Score=33.45 Aligned_cols=32 Identities=28% Similarity=0.624 Sum_probs=25.8
Q ss_pred cccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
.-.||-|...+.. -++..||+.||+.|...|-
T Consensus 31 ~~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~ 62 (141)
T 3knv_A 31 KYLCSACRNVLRR-----PFQAQCGHRYCSFCLASIL 62 (141)
T ss_dssp GGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHG
T ss_pred CcCCCCCChhhcC-----cEECCCCCccCHHHHHHHH
Confidence 4579999987753 3666899999999999975
No 115
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=68.76 E-value=3.2 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=20.8
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
+-.||.|+..++-..+=+.+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4689999999887766567777 476554
No 116
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=68.64 E-value=3.6 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.522 Sum_probs=22.4
Q ss_pred cccCCCCCceeeec----CCCceeEe-ecCCce
Q 024566 181 WARCPACGHCVERK----DGCSVVMC-RCNTRF 208 (265)
Q Consensus 181 ~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 208 (265)
.+-||.|+.++... .+.+.+.| .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 57899999987543 36889999 699977
No 117
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=67.33 E-value=4.8 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=22.0
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
.+-.||.|+..++-+.+=..++| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 45789999999987766667888 576554
No 118
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=66.93 E-value=4 Score=26.17 Aligned_cols=29 Identities=10% Similarity=0.301 Sum_probs=21.1
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
.+-.||.|+..++-..+=+.+.| .||..|
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35689999999887666567777 476554
No 119
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=66.63 E-value=3.6 Score=27.43 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=31.3
Q ss_pred cccccccccccCCCCCChhHHhchhhchHHHHHHHhcCCcccCCCCCceeeecCCCceeEee--cCCceeeccCcccc--
Q 024566 142 QWFCFQCKLKWHAGYRCEESRNLRDQNDIVFGQLVERMKWARCPACGHCVERKDGCSVVMCR--CNTRFCYECGRKIS-- 217 (265)
Q Consensus 142 ~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek~~GCnhm~C~--C~~~FC~~C~~~~~-- 217 (265)
...|+.|+..-|....|.+. .+|.+|+..-.... .|. =...+||.|++.=|
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~--------------------~rcY~c~~~gh~~~-----~c~~p~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI--------------------WRAYILVDDNEKAK-----PKVLPFHTIYCYNCGGKGHFG 59 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG--------------------TCCCCBC------------------CCCBCSSSSCBSSCG
T ss_pred cCCCCCCCCCCCccccCCCc--------------------ccccccccCCcccc-----cccCCCCCCeecccCCCCcCc
Confidence 45688888888988888642 14555554311100 121 14579999999944
Q ss_pred CCCCCCC
Q 024566 218 SGCSCQT 224 (265)
Q Consensus 218 ~g~~~~~ 224 (265)
..|+-.+
T Consensus 60 rdC~~~r 66 (83)
T 3nyb_B 60 DDCKEKR 66 (83)
T ss_dssp GGCSSCC
T ss_pred ccCCccc
Confidence 3465544
No 120
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.28 E-value=1.2 Score=31.69 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=25.2
Q ss_pred cccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
.-.||-|...+.. -++-.||+.||+.|...|-
T Consensus 18 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 18 KYECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (118)
T ss_dssp GGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCCcCChhhcC-----eEECCcCChhhHHHHHHHH
Confidence 3589999987753 3555799999999998874
No 121
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.81 E-value=3.3 Score=29.73 Aligned_cols=29 Identities=14% Similarity=0.431 Sum_probs=23.1
Q ss_pred CcccCCCCCceeeec----CCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERK----DGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 208 (265)
..+-||.|+.++.-. .+-+.+.| .|++.+
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 467899999987633 66889999 599876
No 122
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=65.27 E-value=3.4 Score=30.93 Aligned_cols=31 Identities=19% Similarity=0.523 Sum_probs=24.1
Q ss_pred cccCCC--CCceeeecCCCceeEe-ecCCceeec
Q 024566 181 WARCPA--CGHCVERKDGCSVVMC-RCNTRFCYE 211 (265)
Q Consensus 181 ~k~CP~--C~~~iek~~GCnhm~C-~C~~~FC~~ 211 (265)
-+.||+ |+.-+.-..-=|..+| +|++-+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 478999 9997765544478899 899988763
No 123
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.98 E-value=2.2 Score=30.13 Aligned_cols=36 Identities=28% Similarity=0.714 Sum_probs=26.7
Q ss_pred cccCCCCCceeeecCCCceeEe-ecCCceeeccCccccC-CCC
Q 024566 181 WARCPACGHCVERKDGCSVVMC-RCNTRFCYECGRKISS-GCS 221 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~-g~~ 221 (265)
.-.||-|...+.. -++= .|||.||+.|...|.. .||
T Consensus 22 ~~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~~~CP 59 (117)
T 1jm7_B 22 LLRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIGTGCP 59 (117)
T ss_dssp TTSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTTTBCS
T ss_pred CCCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhcCCCc
Confidence 4689999887742 3444 7999999999998754 344
No 124
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=63.32 E-value=2.1 Score=30.05 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=24.2
Q ss_pred ccCCCCCceeeecCCCceeEeecCCceeeccCccccC
Q 024566 182 ARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISS 218 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 218 (265)
-.||-|...+.. -++=.|||.||+.|...|..
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVE 47 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHh
Confidence 479999877653 23337999999999998753
No 125
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=63.05 E-value=5 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.2
Q ss_pred cCeeeCCCccccccccccc-ccCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYR 157 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 157 (265)
...++|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 5788999999999999987 6788764
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.82 E-value=3.6 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=26.6
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
.+.+...|.+|...|.....--....||..||.+|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45567799999998854322123467999999999654
No 127
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=62.68 E-value=4.2 Score=27.19 Aligned_cols=29 Identities=31% Similarity=0.754 Sum_probs=22.2
Q ss_pred CcccCCCCCce------eeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHC------VERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~------iek~~GCnhm~C-~C~~~F 208 (265)
..-.||.|+.. +.|..|=-++.| .||..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 34679999875 345678888999 598887
No 128
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=62.59 E-value=5.9 Score=26.37 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred CccccCCcCcccceeccccccCCcCeeeCCCcccccc
Q 024566 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFC 145 (265)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 145 (265)
....||+ |+........ ...+.|+.|+..|-
T Consensus 26 ~~y~Cp~--CG~~~v~r~a----tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPN--CGEDRVDRQG----TGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSS--SCCEEEEEEE----TTEEEETTTCCEEE
T ss_pred ccCcCCC--CCCcceeccC----CCeEECCCCCCEec
Confidence 4567995 8886655444 46889999987663
No 129
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=61.98 E-value=2.9 Score=24.56 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=23.5
Q ss_pred cCeeeCCCcccccccccccccCCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKLKWHAGYRC 158 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 158 (265)
...++|..|+..+|..|....|.++.-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~~ 42 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQY 42 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCCE
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCce
Confidence 578999999999999998888888754
No 130
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.75 E-value=24 Score=28.56 Aligned_cols=18 Identities=6% Similarity=0.002 Sum_probs=13.2
Q ss_pred ccCCCChhHHHHHHHHHH
Q 024566 84 CEPVIPASLFSKWCDVLC 101 (265)
Q Consensus 84 i~~~l~~~~~~~~~~~~~ 101 (265)
+..-++++++..|.+...
T Consensus 169 l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 169 LVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHTSCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 344578899999988754
No 131
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=61.48 E-value=3.8 Score=30.66 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=23.3
Q ss_pred ccccCCcCcccceeccccccCCcCeeeCCCccccccc
Q 024566 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (265)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (265)
...||++.|+..+....- ..+..|..|+..+++
T Consensus 118 ~~~c~~~~cg~g~fma~h----~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH----KDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC----SSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEeccc----CCCcccCCCceEEEe
Confidence 478999999874433222 247899999988765
No 132
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.44 E-value=5.8 Score=25.21 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=21.5
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
..-.||.|+.+++-+..=+.+.| .||..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 46789999999887766567777 476554
No 133
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.14 E-value=2 Score=32.53 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=26.2
Q ss_pred cccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 181 WARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 181 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
.-.||-|..++.. -+++.||+.||..|...|.
T Consensus 18 ~~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 18 KYECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (170)
T ss_dssp GGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCCChhhcC-----cEECCCCCHHHHHHHHHHH
Confidence 4689999988763 3677899999999998874
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.88 E-value=3.6 Score=27.23 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=25.8
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
+.+...|.+|...|.....--..-.||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4556789999998853322123467999999999653
No 135
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=54.25 E-value=4.6 Score=23.42 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.0
Q ss_pred cCeeeCCCcccccccccc-cccCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCK-LKWHAGYR 157 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~-~~~H~~~~ 157 (265)
...++|..|+..+|..|. ...|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 578999999999999997 45788875
No 136
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=54.14 E-value=4 Score=25.28 Aligned_cols=36 Identities=22% Similarity=0.671 Sum_probs=25.6
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccccccccCCC
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAG 155 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~ 155 (265)
..|- .|...+.. .....|+.|+..||..|..-.|..
T Consensus 16 ~~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Cccc--ccCcccCC-------CccEECCccCcCcccchhHHHHhh
Confidence 3465 47666531 124789999999999998877764
No 137
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=53.25 E-value=8.5 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=16.5
Q ss_pred CcccCCCCCc-eeeecCCCceeEe-ecCC
Q 024566 180 KWARCPACGH-CVERKDGCSVVMC-RCNT 206 (265)
Q Consensus 180 ~~k~CP~C~~-~iek~~GCnhm~C-~C~~ 206 (265)
....||.|+. .|..+..=.-+.| .||.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 3457999976 4554444445777 4664
No 138
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=53.19 E-value=5.5 Score=30.99 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=19.0
Q ss_pred cccCCCCCceee-ecCCCceeEe-ecCCcee
Q 024566 181 WARCPACGHCVE-RKDGCSVVMC-RCNTRFC 209 (265)
Q Consensus 181 ~k~CP~C~~~ie-k~~GCnhm~C-~C~~~FC 209 (265)
-+.||+|+..+. ....+.| +| +|++-|.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~ 142 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLK 142 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEE
Confidence 388999997644 3444444 88 7887774
No 139
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=52.03 E-value=4.7 Score=26.50 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.7
Q ss_pred cccCCCCCCCCCCCccC-ccCCCChh
Q 024566 67 KIDCPGLDCKHNLDPFA-CEPVIPAS 91 (265)
Q Consensus 67 ~i~CP~~~C~~~l~~~~-i~~~l~~~ 91 (265)
-.+||. |+.+|+..+ |.+.|.-+
T Consensus 8 ~~~~Pl--CG~~L~W~eLIeQML~~e 31 (95)
T 2k5c_A 8 MAKCPI--CGSPLKWEELIEEMLIIE 31 (95)
T ss_dssp CEECSS--SCCEECHHHHHHHSTTCS
T ss_pred cccCCc--CCCccCHHHHHHHHHhhc
Confidence 358999 999988754 45555543
No 140
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=51.99 E-value=4.7 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=12.6
Q ss_pred ccCCCCCceeeecCCCceeEe-ecCC
Q 024566 182 ARCPACGHCVERKDGCSVVMC-RCNT 206 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C-~C~~ 206 (265)
-.|+.|+..++...+ +-+.| .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 356666666655433 33445 3544
No 141
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.87 E-value=3 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=29.3
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCccccCCCCCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKISSGCSCQ 223 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~g~~~~ 223 (265)
...+|-.|+..+...+ =.-+.|+||..||-.=.-+-.|.|++.
T Consensus 14 ~~~rC~~C~kk~gL~~-~egf~CrCg~~FC~~HRy~e~H~C~fD 56 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQ-QELGSCRCGYVFCMLHRLPEQHDCTFD 56 (67)
T ss_dssp CTTBCSSSCCBCCHHH-HHHHCCSSSCCCCTTTCSTGGGTCSSC
T ss_pred cCCcchhhCCeecccc-cCceEecCCCEehhccCCccccCCccc
Confidence 4568888888776431 001578999999988777666666553
No 142
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=51.52 E-value=12 Score=22.81 Aligned_cols=27 Identities=30% Similarity=0.844 Sum_probs=19.0
Q ss_pred CcccCCCCCceeeecCCCceeEee---cCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMCR---CNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~---C~~~F 208 (265)
..-.||.|+..++-.. +.+.|. |+..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 4568999999988766 566664 55443
No 143
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=51.40 E-value=6.6 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=20.2
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
+.|| |+.+...+.. .....|+ ||..+
T Consensus 5 v~C~---C~~~~~~~~~----~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 5 FRCD---CGRALYSREG----AKTRKCV-CGRTV 30 (71)
T ss_dssp EEET---TSCCEEEETT----CSEEEET-TTEEE
T ss_pred EECC---CCCEEEEcCC----CcEEECC-CCCee
Confidence 5687 9998887765 5788998 98755
No 144
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.79 E-value=4.1 Score=29.37 Aligned_cols=37 Identities=19% Similarity=0.524 Sum_probs=25.5
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
+.....|.+|...|.....-...-.||+.||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3445689999998853322123567999999999554
No 145
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.58 E-value=24 Score=22.87 Aligned_cols=63 Identities=19% Similarity=0.435 Sum_probs=41.1
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEP 86 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~ 86 (265)
+.+...| ||-....+...++....|..=|...|+.-...... ......||. |.....+..++.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~~~~K~ 71 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGPSIMKN 71 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCSCBCCC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCCCceee
Confidence 4566778 89887644455556677887788888864333221 135678998 987766655544
No 146
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.56 E-value=4.2 Score=27.42 Aligned_cols=37 Identities=22% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
+.+...|.+|...|.....-.....||+.||..|...
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3455689999998853322223567999999999554
No 147
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=50.28 E-value=8 Score=29.66 Aligned_cols=24 Identities=25% Similarity=0.697 Sum_probs=20.5
Q ss_pred ccCCCCCceeeecCCCceeEe-ecCCc
Q 024566 182 ARCPACGHCVERKDGCSVVMC-RCNTR 207 (265)
Q Consensus 182 k~CP~C~~~iek~~GCnhm~C-~C~~~ 207 (265)
-.|+.|+.+..+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 57999999998876 99999 69863
No 148
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=49.84 E-value=6.1 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.1
Q ss_pred cCeeeCCCccccccccccc-ccCCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRC 158 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 158 (265)
...++|..|+..+|..|.. ..|.+++-
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 5789999999999999987 68888753
No 149
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=49.31 E-value=9.6 Score=25.89 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=34.0
Q ss_pred CcccccccccccccccccccccCCC-CChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCcc
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLC-THPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPF 82 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 82 (265)
-....|-.|+-... . +..| .|.+|..|+...+. ..-+||. |+..|+..
T Consensus 26 ~G~~nCKsCWf~~k---~---LV~C~dHYLCl~CLtlmL~--------~SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK---G---LVECNNHYLCLNCLTLLLS--------VSNRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS---S---EEECSSCEEEHHHHHHTCS--------SSSEETT--TTEECCCC
T ss_pred cCcccChhhccccC---C---eeeecchhhHHHHHHHHHh--------hccCCcc--cCCcCCcc
Confidence 34568999987663 2 2444 79999999987664 2337999 99887654
No 150
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.13 E-value=4.8 Score=26.71 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=24.6
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (265)
+.+...|.+|...|.....--....||..||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 455678999999885332211246799999999943
No 151
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.97 E-value=9.3 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=25.1
Q ss_pred ccccCCcCcccceeccccccCCcCeeeCCCcccccccccccc
Q 024566 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLK 151 (265)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 151 (265)
...|..++|.... ...+.|..|+..||...+.+
T Consensus 12 ~~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 12 TNKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST
T ss_pred CCCCCccCCCCCC---------ccceECCCCCcccCcccCCc
Confidence 3578888887651 24679999999999988754
No 152
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=47.36 E-value=9.3 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.459 Sum_probs=24.0
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQ 147 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 147 (265)
+.|| +|.+.-.+-+. ....+.|..|+..+|.-
T Consensus 33 VkCp--~C~n~q~VFSh---A~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSN---AQSTIICEKCSAILCKP 64 (81)
T ss_dssp EECS--SSCCEEEEETT---CSSCEECSSSCCEEEEE
T ss_pred eECC--CCCCeeEEEec---CccEEEccCCCCEEeec
Confidence 6798 69887765543 25789999999888753
No 153
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=46.87 E-value=6.9 Score=24.91 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=25.3
Q ss_pred cCeeeCCCcccccccccccccCCCCCChhH
Q 024566 132 VKKTQCPNCKQWFCFQCKLKWHAGYRCEES 161 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~ 161 (265)
...++|..|+..+|..|....|.++.-...
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCEecH
Confidence 578999999999999998888998865443
No 154
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=46.05 E-value=14 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=8.8
Q ss_pred cccccccccCCCCCCh
Q 024566 144 FCFQCKLKWHAGYRCE 159 (265)
Q Consensus 144 ~C~~C~~~~H~~~~C~ 159 (265)
.|+.|...-|....|.
T Consensus 44 ~C~~Cg~~GH~~~~C~ 59 (124)
T 2lli_A 44 QCSKCDEVGHYRSQCP 59 (124)
T ss_dssp CSSSSSCSSSSTTTSC
T ss_pred cccccCCCCCccccCc
Confidence 4666655555555554
No 155
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=46.01 E-value=16 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.656 Sum_probs=26.0
Q ss_pred ccccCCcCcccceeccccccCCcCeeeCCCcccccccccccc
Q 024566 110 RSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLK 151 (265)
Q Consensus 110 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 151 (265)
...|..++|.... ...+.|..|+..||...+.+
T Consensus 25 ~~~C~~~~Ck~~~---------~l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVE---------LVAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEE---------SSCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCC---------ccceECCCCCcccccccCCc
Confidence 3568888888762 24679999999999998764
No 156
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.83 E-value=8.3 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.1
Q ss_pred cCeeeCCCccccccccccc-ccCCCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRC 158 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 158 (265)
...++|..++..+|..|.. ..|.+++-
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~~ 50 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHHT 50 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCCE
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCcE
Confidence 5789999999999999987 78988753
No 157
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=45.26 E-value=11 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=25.7
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCccccccccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKL 150 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 150 (265)
+.|| +|.+.-..-+. ....+.|..|+..+|.-=+.
T Consensus 37 VkCp--~C~~~~~VFSh---A~t~V~C~~CgtvL~~PTGG 71 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSH---SQTVVVCPGCQTVLCQPTGG 71 (86)
T ss_dssp EECT--TTCCEEEEETT---CSSCCCCSSSCCCCSCCCSS
T ss_pred EECC--CCCCeeEEEec---CCcEEEccCCCCEeecCCCC
Confidence 7899 69987765443 25789999999988864443
No 158
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.09 E-value=5.9 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=24.3
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (265)
......|.+|...|.....--....||..||..|..
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 344568999999885332212346799999998854
No 159
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.05 E-value=5.6 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=22.5
Q ss_pred cccccccccccccccccccCCCCChhHHHHHH
Q 024566 22 FTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (265)
Q Consensus 22 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (265)
..|.+|...|.....--....||..||.+|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999998885332212346799999999964
No 160
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.79 E-value=4.8 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.728 Sum_probs=13.7
Q ss_pred Cccccccccccccccccc
Q 024566 19 GSSFTCEICIEPMAASKK 36 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~ 36 (265)
.+.+.|+||+.++.....
T Consensus 3 ~EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSADE 20 (34)
T ss_dssp SEEEECTTTCCEESSHHH
T ss_pred CcccCCcHHHHHcCCHHH
Confidence 456999999998865543
No 161
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=43.41 E-value=8.3 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.5
Q ss_pred cCeeeCCCccccccccccc-ccCCCCCChh
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRCEE 160 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~~ 160 (265)
...++|..|+..+|..|.. ..|.++.-..
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCBCC
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCccC
Confidence 5789999999999999987 7898876443
No 162
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=42.69 E-value=8.9 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.4
Q ss_pred cCeeeCCCccccccccccc-ccCCCCCCh
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGYRCE 159 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C~ 159 (265)
...++|..|+..+|..|.. ..|.++.-.
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~ 46 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVA 46 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEE
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCee
Confidence 5789999999999999986 588887543
No 163
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=42.59 E-value=8.2 Score=25.44 Aligned_cols=32 Identities=19% Similarity=0.605 Sum_probs=23.5
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQ 147 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 147 (265)
+.|| +|.+.-.+-+-. ...+.|..|+..+|.-
T Consensus 35 VkCp--~C~~~q~VFSha---~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHA---QTAVTCESCSTILCTP 66 (82)
T ss_dssp EECT--TSCSCEEEESBC---SSCCCCSSSCCCCEEC
T ss_pred EECC--CCCCeeEEEecC---CeEEEccccCCEEecc
Confidence 6798 698876654432 5788999999888753
No 164
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=42.54 E-value=5 Score=32.21 Aligned_cols=38 Identities=32% Similarity=0.650 Sum_probs=21.7
Q ss_pred CccccCCcCcccceeccccccCCcCeeeCCCccccccccc
Q 024566 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQC 148 (265)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C 148 (265)
...|||+ |+..-...-....-...+.|+.|+..|=++=
T Consensus 33 ~n~yCPn--CG~~~l~~f~nN~PVaDF~C~~C~EeyELKS 70 (257)
T 4esj_A 33 RQSYCPN--CGNNPLNHFENNRPVADFYCNHCSEEFELKS 70 (257)
T ss_dssp HHCCCTT--TCCSSCEEC----CCCEEECTTTCCEEEEEE
T ss_pred HCCcCCC--CCChhhhhccCCCcccccccCCcchhheecc
Confidence 3479995 8884322111111256799999987664443
No 165
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=42.41 E-value=12 Score=30.80 Aligned_cols=26 Identities=42% Similarity=0.921 Sum_probs=20.8
Q ss_pred cccCCCCCceeeec--CCCceeEe-ecCC
Q 024566 181 WARCPACGHCVERK--DGCSVVMC-RCNT 206 (265)
Q Consensus 181 ~k~CP~C~~~iek~--~GCnhm~C-~C~~ 206 (265)
-++||.|+.+|++. +|-+-..| .|+.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 37899999999875 77777777 5764
No 166
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=41.40 E-value=4.4 Score=29.48 Aligned_cols=44 Identities=20% Similarity=0.525 Sum_probs=28.6
Q ss_pred cCCCCCCCC---CCCccCccCCCChhHHHHHHHHHHHHhhcCCCccccCCcCcccceec
Q 024566 69 DCPGLDCKH---NLDPFACEPVIPASLFSKWCDVLCEDYVLGFERSYCPNTNCMALVVN 124 (265)
Q Consensus 69 ~CP~~~C~~---~l~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~ 124 (265)
.||. |+. .+....++.+|.++.++ +...++.+|++|+|......
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFN 49 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEEC
T ss_pred cCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEEC
Confidence 5888 884 34555556555544322 33357889999999987664
No 167
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=41.27 E-value=10 Score=31.14 Aligned_cols=25 Identities=24% Similarity=0.793 Sum_probs=20.3
Q ss_pred ccCCCCCceeeec--CCCceeEe-ecCC
Q 024566 182 ARCPACGHCVERK--DGCSVVMC-RCNT 206 (265)
Q Consensus 182 k~CP~C~~~iek~--~GCnhm~C-~C~~ 206 (265)
++||.|+.+|++. +|-+-..| .|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 7899999999876 77777777 5764
No 168
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.13 E-value=12 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.874 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhC
Q 024566 47 FCQDCIARYIQVKVQD 62 (265)
Q Consensus 47 fC~~Cl~~~~~~~i~~ 62 (265)
||+.||.+|+...-.+
T Consensus 43 FCRNCLskWy~~aA~e 58 (105)
T 2o35_A 43 FCRNCLSNWYREAAEA 58 (105)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 169
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.56 E-value=12 Score=25.52 Aligned_cols=16 Identities=25% Similarity=0.999 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhhC
Q 024566 47 FCQDCIARYIQVKVQD 62 (265)
Q Consensus 47 fC~~Cl~~~~~~~i~~ 62 (265)
||+.||.+|+...-.+
T Consensus 42 FCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 42 FCRNCLAKWLMEAATE 57 (104)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 170
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=40.24 E-value=11 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=20.9
Q ss_pred CccccCCcCcccceeccccccCCcCeeeCCCccccc
Q 024566 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
..-.|| .|+.-..+++. ..+.||.|+.+|
T Consensus 26 ~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred cCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 456688 58887777665 568888887665
No 171
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.20 E-value=21 Score=25.60 Aligned_cols=34 Identities=26% Similarity=0.665 Sum_probs=25.5
Q ss_pred CccccCCcCcccceeccccccCCcCeeeCCCccccccccccc
Q 024566 109 ERSYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKL 150 (265)
Q Consensus 109 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 150 (265)
+...|. .|+..|... ..+..|..||..||..|..
T Consensus 68 ~~~~C~--~C~~~Fs~~------~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCM--ACGKGFSVT------VRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCT--TTCCBCCSS------SCCEECTTTCCEECGGGSC
T ss_pred CCCCCc--CcCCccccc------cccccCCCCCeEEChHHhC
Confidence 345677 488766532 3578999999999999965
No 172
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=40.16 E-value=11 Score=30.94 Aligned_cols=24 Identities=21% Similarity=0.665 Sum_probs=19.5
Q ss_pred ccCCCCCceeeec--CCCceeEe-ecC
Q 024566 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (265)
Q Consensus 182 k~CP~C~~~iek~--~GCnhm~C-~C~ 205 (265)
++||.|+.+|++. +|-+-..| .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999876 77777777 575
No 173
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=40.12 E-value=11 Score=31.04 Aligned_cols=24 Identities=33% Similarity=0.888 Sum_probs=19.5
Q ss_pred ccCCCCCceeeec--CCCceeEe-ecC
Q 024566 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (265)
Q Consensus 182 k~CP~C~~~iek~--~GCnhm~C-~C~ 205 (265)
++||.|+.+|+|. +|-+-..| .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 7999999999874 77777777 575
No 174
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=39.75 E-value=11 Score=30.76 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=19.6
Q ss_pred ccCCCCCceeeec--CCCceeEe-ecC
Q 024566 182 ARCPACGHCVERK--DGCSVVMC-RCN 205 (265)
Q Consensus 182 k~CP~C~~~iek~--~GCnhm~C-~C~ 205 (265)
++||.|+.+|++. +|-+-..| .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6899999999875 77777777 575
No 175
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=39.66 E-value=6.2 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=0.0
Q ss_pred cCCCceeEeecCCceeeccCccccC
Q 024566 194 KDGCSVVMCRCNTRFCYECGRKISS 218 (265)
Q Consensus 194 ~~GCnhm~C~C~~~FC~~C~~~~~~ 218 (265)
.+.|.-+.-.|++.|+..|...|-.
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp -------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHHH
Confidence 3456666668999999999999864
No 176
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=36.54 E-value=25 Score=33.44 Aligned_cols=59 Identities=24% Similarity=0.541 Sum_probs=39.2
Q ss_pred Cccccccccccccccccc------ccccCCCC--------------------ChhHHHHHHHHHHHHhhCCCCCcccCCC
Q 024566 19 GSSFTCEICIEPMAASKK------FKNRNLCT--------------------HPFCQDCIARYIQVKVQDDNTAKIDCPG 72 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~------~~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 72 (265)
-..-.|+-|+.++.++.+ |+..+.|| -.+|.+|.+.|-.-.-..=...++.||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 445789999998766543 33345565 2479999999865322211245799999
Q ss_pred CCCCCCC
Q 024566 73 LDCKHNL 79 (265)
Q Consensus 73 ~~C~~~l 79 (265)
|+-.+
T Consensus 189 --CGP~l 193 (761)
T 3vth_A 189 --CGPSL 193 (761)
T ss_dssp --TSCCE
T ss_pred --cCCee
Confidence 98655
No 177
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.17 E-value=9.2 Score=27.34 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYI 56 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 56 (265)
+.....|..|...|.....--....||..||..|....+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 445578999999885432222356799999999976554
No 178
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=35.26 E-value=6.7 Score=32.91 Aligned_cols=31 Identities=23% Similarity=0.851 Sum_probs=23.0
Q ss_pred cCCcccCCCCCceeeecC-CCceeEe-ecCCce
Q 024566 178 RMKWARCPACGHCVERKD-GCSVVMC-RCNTRF 208 (265)
Q Consensus 178 ~~~~k~CP~C~~~iek~~-GCnhm~C-~C~~~F 208 (265)
+..|.+||+|+..+...+ .=|...| .|++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 346899999999998773 2377888 588775
No 179
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=35.19 E-value=19 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.669 Sum_probs=17.3
Q ss_pred cCCCCCce---eeecCCCceeEe-ecCCc
Q 024566 183 RCPACGHC---VERKDGCSVVMC-RCNTR 207 (265)
Q Consensus 183 ~CP~C~~~---iek~~GCnhm~C-~C~~~ 207 (265)
.||.|+.+ +.+..+=-.+.| .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 58888875 345566667888 48865
No 180
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.17 E-value=18 Score=22.61 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCcccccccccccccccccccccC-CCCChhHHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRN-LCTHPFCQDCIAR 54 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~ 54 (265)
+.+...|++|..++.+...++... .|.--|...|+.-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 456678999999886655555566 7888888999864
No 181
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.11 E-value=1e+02 Score=20.63 Aligned_cols=93 Identities=14% Similarity=0.260 Sum_probs=48.4
Q ss_pred CcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHHHHH
Q 024566 19 GSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWCD 98 (265)
Q Consensus 19 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~ 98 (265)
...+.|.+|-..+.... =|..++..... ..++.|+. |...+.. ...+.+-.
T Consensus 5 ~~~~~C~~C~~~f~~~~---------------~l~~H~~~h~~---~~~~~C~~--C~~~f~~--------~~~l~~H~- 55 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSKY---------------YLKVHNRKHTG---EKPFECPK--CGKCYFR--------KENLLEHE- 55 (124)
T ss_dssp CSSCCCTTTCCCCSSHH---------------HHHHHHHHHSS---CCSCBCTT--TCCBCSS--------HHHHHHHH-
T ss_pred CCCCCCCCCCCcCCCHH---------------HHHHHHHhCCC---CCCeECCC--CCchhcC--------HHHHHHHH-
Confidence 45688999977764322 24445543332 35688988 8865532 12222211
Q ss_pred HHHHHhh-cCCCccccCCcCcccceeccccc------cCCcCeeeCCCccccc
Q 024566 99 VLCEDYV-LGFERSYCPNTNCMALVVNECER------SGKVKKTQCPNCKQWF 144 (265)
Q Consensus 99 ~~~~~~~-~~~~~~~Cp~~~C~~~~~~~~~~------~~~~~~~~C~~C~~~~ 144 (265)
..... .......|+ .|+..+...... ......+.|+.|++.|
T Consensus 56 --~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 56 --ARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp --HHCCCCSCCCCEECS--SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred --hhhhcCCCCCCeECC--CCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence 11001 123346687 488776543210 1123568888888766
No 182
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.24 E-value=19 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=17.6
Q ss_pred CcccceeccccccCCcCeeeCCCccccc
Q 024566 117 NCMALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 117 ~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
.|+..+..++. ...+.+.||.||+.+
T Consensus 8 rCg~~fs~~el--~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 8 KCWKTFTDEQL--KVLPGVRCPYCGYKI 33 (48)
T ss_dssp CTTTTCCCCCS--CCCSSSCCTTTCCSC
T ss_pred ccCCCccHHHH--hhCCCcccCccCcEE
Confidence 47777765544 236788899898754
No 183
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=33.63 E-value=21 Score=28.74 Aligned_cols=22 Identities=32% Similarity=0.874 Sum_probs=14.7
Q ss_pred ccCCCCCc----eeeecCCCceeEe-ecCC
Q 024566 182 ARCPACGH----CVERKDGCSVVMC-RCNT 206 (265)
Q Consensus 182 k~CP~C~~----~iek~~GCnhm~C-~C~~ 206 (265)
-+||.|+- .+. ++| ++.| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 68999987 444 345 4666 5665
No 184
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=33.51 E-value=28 Score=21.89 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=23.4
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQ 147 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 147 (265)
+.|| +|.+.-..-+- ....+.|..|+..+|.-
T Consensus 8 VKCp--~C~niq~VFSh---A~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDH---PSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EECT--TTCCEEEEESS---CSSCEECSSSCCEEEEC
T ss_pred EECC--CCCCceEEEec---CceEEEcccCCCEEeec
Confidence 6688 69887665443 25789999999888753
No 185
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.95 E-value=22 Score=26.71 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=33.7
Q ss_pred CCCcccccccccccccccccccccC--CCCChhHHHHHHHHHHH----HhhCCCCCcccCCCCCCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRN--LCTHPFCQDCIARYIQV----KVQDDNTAKIDCPGLDCKH 77 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~----~i~~~~~~~i~CP~~~C~~ 77 (265)
++.....|.||.+-- .++... .|...||.+|+...+.. .|.+ ..+-.|-. |.-
T Consensus 75 eDG~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~--~d~W~Cy~--C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIK--EDPWNCYM--CGH 133 (159)
T ss_dssp TTSSBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHT--SSSCCCTT--TCS
T ss_pred CCCCcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhc--cCCCEEEe--cCC
Confidence 455678999998754 222233 68899999999986543 2222 24556766 663
No 186
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=31.34 E-value=36 Score=21.99 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=28.8
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcccccccccccccCCCCCChhHHh
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCFQCKLKWHAGYRCEESRN 163 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~ 163 (265)
..|..++|...- ..-+.|..|+..||...+.+. .+.|.....
T Consensus 15 ~~Cs~~~C~~~d---------flpf~C~~C~~~FC~~HR~~e--~H~C~~~~~ 56 (75)
T 1wys_A 15 QHCQVQHCRQRD---------FLPFVCDGCSGIFCLEHRSKD--SHGCSEVNV 56 (75)
T ss_dssp CCCSCTTTCCCS---------CCCEECTTTCCEECSTTCSSG--GGTCCCCSS
T ss_pred CCcCcccCCCcc---------ceeeECcccCcCcCcccCCcc--ccCCCCCcc
Confidence 567777776651 357899999999999887642 234654443
No 187
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.62 E-value=54 Score=20.19 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=25.8
Q ss_pred cCCCCCCCCCCCccCccCCCChhHHHHHHHHHHHHhh
Q 024566 69 DCPGLDCKHNLDPFACEPVIPASLFSKWCDVLCEDYV 105 (265)
Q Consensus 69 ~CP~~~C~~~l~~~~i~~~l~~~~~~~~~~~~~~~~~ 105 (265)
.||. |+.......-...-++|-+.+|...+...+-
T Consensus 20 ~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 20 ICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp BCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred cCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhc
Confidence 4888 8887766666666677888999887766543
No 188
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=30.24 E-value=32 Score=25.25 Aligned_cols=54 Identities=24% Similarity=0.580 Sum_probs=34.7
Q ss_pred CCCcccccccccccccccccccccCCCCChhHHHHHHHHHH----HHhhCCCCCcccCCCCCCCC
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQ----VKVQDDNTAKIDCPGLDCKH 77 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~~i~CP~~~C~~ 77 (265)
++.....|.+|.+-- .+.-...|...||..|+...+. ..|.. ...+-.||. |..
T Consensus 59 ~Dg~~d~C~vC~~GG----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~-p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRKELSTIMD-ENNQWYCYI--CHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHT-STTCCCCTT--TCC
T ss_pred CCCCCCeecccCCCC----cEEeCCCCCCeeeHhhcCCCCChhhhhhccc-CCCCCEeec--ccC
Confidence 345668899998754 2223567999999999997663 22211 123457888 864
No 189
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=29.35 E-value=29 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=19.5
Q ss_pred CccccCCcCc-c------cceeccccccCCcCeeeCCCccccc
Q 024566 109 ERSYCPNTNC-M------ALVVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 109 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
+...||+|+| . ..|...+. .....+|..|.+.+
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~---~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESK---NPLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEE---TTEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeC---CCCEEEeeCCCcCh
Confidence 3478999999 3 12222111 13468888887654
No 190
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=29.08 E-value=28 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=24.1
Q ss_pred CcccCCCCCceeeecCCCceeEeecCCceeeccCcccc
Q 024566 180 KWARCPACGHCVERKDGCSVVMCRCNTRFCYECGRKIS 217 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 217 (265)
....||-|..... +-+.=.|||.||+.|...|.
T Consensus 331 ~~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl 363 (389)
T 2y1n_A 331 TFQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQ 363 (389)
T ss_dssp SSSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHH
T ss_pred CCCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHH
Confidence 3478999977653 22333699999999998874
No 191
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.64 E-value=39 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=23.2
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCccccccc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCKQWFCF 146 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 146 (265)
+.|| +|.+.-..-+. ....+.|..|+..+|.
T Consensus 16 VkCp--~C~~~q~VFSh---a~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSH---PATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESS---CSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEec---CCeEEEccCcCCEEec
Confidence 6798 69887665443 2578999999988875
No 192
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.35 E-value=19 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.4
Q ss_pred CCcccCCCCCceee
Q 024566 179 MKWARCPACGHCVE 192 (265)
Q Consensus 179 ~~~k~CP~C~~~ie 192 (265)
...+.||.|+.++.
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 45688999999986
No 193
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.15 E-value=57 Score=22.59 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=33.7
Q ss_pred ccccccccccccc-----ccccccccCCCCChhHHHHHH--HHHHHHhhCCCCCcccCCCCCCC
Q 024566 20 SSFTCEICIEPMA-----ASKKFKNRNLCTHPFCQDCIA--RYIQVKVQDDNTAKIDCPGLDCK 76 (265)
Q Consensus 20 ~~~~C~IC~~~~~-----~~~~~~~~~~C~H~fC~~Cl~--~~~~~~i~~~~~~~i~CP~~~C~ 76 (265)
+...|.+|..... ..+.++....|+..|...|+. .-+...+..+ .-.||. |+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~--C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIE--CK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTT--TC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---cccccc--CC
Confidence 4567999987531 223455567799999999995 2344455543 346887 75
No 194
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.67 E-value=76 Score=22.81 Aligned_cols=51 Identities=24% Similarity=0.595 Sum_probs=33.2
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHH-----HHHhhCCCCCcccCCCCCCC
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYI-----QVKVQDDNTAKIDCPGLDCK 76 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~-----~~~i~~~~~~~i~CP~~~C~ 76 (265)
+.....|.||.+--. ++-...|...||.+|+...+ ...+.. ..+-.|+. |.
T Consensus 54 Dg~~~~C~vC~dGG~----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~--~~~W~C~~--C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRRELSTIMDE--NNQWYCYI--CH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCT--TSCCCCTT--TC
T ss_pred CCCCCcCeecCCCCe----eEecCCCchhhhHHHhCCCcchhHHHHhccC--CCCeEcCC--cC
Confidence 455677999987542 22346789999999999763 333221 23457877 64
No 195
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=26.85 E-value=28 Score=18.35 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=8.9
Q ss_pred ccCCCCCCCCC
Q 024566 68 IDCPGLDCKHN 78 (265)
Q Consensus 68 i~CP~~~C~~~ 78 (265)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 67999999854
No 196
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.24 E-value=15 Score=22.59 Aligned_cols=35 Identities=34% Similarity=0.560 Sum_probs=22.5
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCI 52 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl 52 (265)
+.+...|+||.....+...++....|..=|...|+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cv 37 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCV 37 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCcccc
Confidence 45667899998877544445445566655666665
No 197
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=26.24 E-value=31 Score=17.95 Aligned_cols=28 Identities=14% Similarity=0.484 Sum_probs=18.6
Q ss_pred CCCcccccccccccccccccccccCCCCChhH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRNLCTHPFC 48 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC 48 (265)
...+..+|.+|+.-.++.+. ..|-..||
T Consensus 5 frrpfhecalcysitdpger----qrcidmyc 32 (36)
T 2jyp_A 5 FRRPFHECALCYSITDPGER----QRCIDMYC 32 (36)
T ss_dssp STTTTTCCSSSTTTTTTTCT----TCGGGTTT
T ss_pred ccCccchheeEEeecCcchh----hhhhhhee
Confidence 44677899999987765543 44544444
No 198
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=10 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.7
Q ss_pred cCeeeCCCccccccccccc-ccCCCC
Q 024566 132 VKKTQCPNCKQWFCFQCKL-KWHAGY 156 (265)
Q Consensus 132 ~~~~~C~~C~~~~C~~C~~-~~H~~~ 156 (265)
...++|..++..+|..|.. ..|.++
T Consensus 27 ~L~lfC~~d~~~iC~~C~~~~eH~~H 52 (57)
T 2egm_A 27 ALKLFCEVDEEAICVVCRESRSHKQH 52 (57)
T ss_dssp BCCEEETTTTEEECHHHHHSHHHHSS
T ss_pred eeeEEcCCCCcEEecccCCCCCCCCC
Confidence 5789999999999999986 566655
No 199
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.32 E-value=10 Score=28.68 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=44.4
Q ss_pred CCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCccCCCChhHHHHHH
Q 024566 18 GGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACEPVIPASLFSKWC 97 (265)
Q Consensus 18 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~~~~~~~ 97 (265)
+.+...| +|.....+...++....|..-|...|+.---... . ......||. |...-.......-++.+.++...
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~-~--~~~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~ 78 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEA-E--LIDEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLK 78 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH-T--TCSSCCCHH--HHHHHHHHTTTSBCCHHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhc-c--CccCeecCC--CcchhccccccccCCHHHHHHHH
Confidence 4567789 9988764444455567788889999985322211 1 123567887 87432222223345666666665
Q ss_pred HHHH
Q 024566 98 DVLC 101 (265)
Q Consensus 98 ~~~~ 101 (265)
..+.
T Consensus 79 ~il~ 82 (174)
T 2ri7_A 79 RVLR 82 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 200
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.27 E-value=77 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHHHHhh-cC--------CCccccCCcCcccceeccc
Q 024566 88 IPASLFSKWCDVLCEDYV-LG--------FERSYCPNTNCMALVVNEC 126 (265)
Q Consensus 88 l~~~~~~~~~~~~~~~~~-~~--------~~~~~Cp~~~C~~~~~~~~ 126 (265)
+.++.+....+.+.+..+ .. +...+|+ +|++.+....
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 455666655555555444 22 3357898 5998877644
No 201
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.15 E-value=55 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHHHh-h-c--------CCCccccCCcCcccceeccccccCCcCee-eCCCccc
Q 024566 88 IPASLFSKWCDVLCEDY-V-L--------GFERSYCPNTNCMALVVNECERSGKVKKT-QCPNCKQ 142 (265)
Q Consensus 88 l~~~~~~~~~~~~~~~~-~-~--------~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~-~C~~C~~ 142 (265)
+.++.+......+.+.. + . .+...+|. +|+..+.... ... .||.|+.
T Consensus 41 v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~------~~~~~CP~Cgs 98 (119)
T 2kdx_A 41 MDKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNA------LDYGVCEKCHS 98 (119)
T ss_dssp CCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCC------STTCCCSSSSS
T ss_pred ccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCC------CCCCcCccccC
Confidence 34566666555555555 3 2 13346777 4887776532 344 6777764
No 202
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=25.09 E-value=1e+02 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred CCCccccCCcCcccc--eecccccc--CCcCeeeCCCcccc
Q 024566 107 GFERSYCPNTNCMAL--VVNECERS--GKVKKTQCPNCKQW 143 (265)
Q Consensus 107 ~~~~~~Cp~~~C~~~--~~~~~~~~--~~~~~~~C~~C~~~ 143 (265)
..++-.||+-.|.+. ++....+. ....++.||.|+..
T Consensus 103 ~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~Dv 143 (182)
T 1qf8_A 103 QGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDV 143 (182)
T ss_dssp TTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCE
T ss_pred cCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccce
Confidence 356788999888653 22221111 22567777776643
No 203
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.98 E-value=27 Score=21.78 Aligned_cols=11 Identities=55% Similarity=1.126 Sum_probs=6.3
Q ss_pred cccCCCCCcee
Q 024566 181 WARCPACGHCV 191 (265)
Q Consensus 181 ~k~CP~C~~~i 191 (265)
..+||.|+..|
T Consensus 38 ~iRC~~CG~RI 48 (63)
T 3h0g_L 38 VIRCRECGHRV 48 (63)
T ss_dssp CCCCSSSCCCC
T ss_pred ceECCCCCcEE
Confidence 45666666555
No 204
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.92 E-value=53 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCCCcccccccccccccccccccccCCCCChhHHHHHH
Q 024566 16 GGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIA 53 (265)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 53 (265)
....+...|.||..... ...++....|..-|...|+.
T Consensus 13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHT
T ss_pred ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCC
Confidence 33456678999988753 33444456788788888875
No 205
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.92 E-value=16 Score=29.03 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=23.8
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
...|.+|...|.....-.....||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3589999988853322223567999999998554
No 206
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.83 E-value=15 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=23.4
Q ss_pred ccccccccccccccccccccCCCCChhHHHHHHH
Q 024566 21 SFTCEICIEPMAASKKFKNRNLCTHPFCQDCIAR 54 (265)
Q Consensus 21 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 54 (265)
...|.+|...|.....--..-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999988853322123467999999988543
No 207
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.68 E-value=21 Score=21.28 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=9.0
Q ss_pred CcccCCCCCce
Q 024566 180 KWARCPACGHC 190 (265)
Q Consensus 180 ~~k~CP~C~~~ 190 (265)
.-+.||+|+..
T Consensus 13 ~k~iCpkC~a~ 23 (51)
T 3j21_g 13 KKYVCLRCGAT 23 (51)
T ss_dssp SEEECTTTCCE
T ss_pred CCccCCCCCCc
Confidence 55789999987
No 208
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.88 E-value=30 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=12.7
Q ss_pred cccCCcCcccceeccccccCCcCeeeCCCcc
Q 024566 111 SYCPNTNCMALVVNECERSGKVKKTQCPNCK 141 (265)
Q Consensus 111 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~ 141 (265)
++|. +|+........ ..-..|+.|+
T Consensus 38 I~Cn--DC~~~s~v~~h----~lg~kC~~C~ 62 (79)
T 2k2d_A 38 ILCN--DCNGRSTVQFH----ILGMKCKICE 62 (79)
T ss_dssp EEES--SSCCEEEEECC----TTCCCCTTTS
T ss_pred EECC--CCCCCccCCce----eecccCcCCC
Confidence 5666 57766544332 2223566555
No 209
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.82 E-value=36 Score=21.84 Aligned_cols=27 Identities=19% Similarity=0.588 Sum_probs=16.7
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCC
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNT 206 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~ 206 (265)
.--.||.|+..-.|..+-.-=.| +|+.
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCC
Confidence 34679999987766655433445 3443
No 210
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.81 E-value=38 Score=20.84 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=11.3
Q ss_pred CCcccCCCCCceee
Q 024566 179 MKWARCPACGHCVE 192 (265)
Q Consensus 179 ~~~k~CP~C~~~ie 192 (265)
.....||+|+.+..
T Consensus 28 p~l~~c~~cGe~~~ 41 (60)
T 3v2d_5 28 PTLVPCPECKAMKP 41 (60)
T ss_dssp CCCEECTTTCCEEC
T ss_pred CceeECCCCCCeec
Confidence 45688999999876
No 211
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=21.97 E-value=34 Score=29.48 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred cccCCCCcccccccccccccccccccccCCCCChhHHHHHHHHHHHHhhCCCCCcccCCCCCCCCCCCccCcc
Q 024566 13 LEKGGGGSSFTCEICIEPMAASKKFKNRNLCTHPFCQDCIARYIQVKVQDDNTAKIDCPGLDCKHNLDPFACE 85 (265)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~i~ 85 (265)
+......-.+.|++=+..+..+.. ...|.|.-|.+ +..|+....+. ...+||. |...+..+++.
T Consensus 241 Iv~~s~~vSL~CPlS~~ri~~PvR---g~~C~HlQCFD-l~sfL~~~~~~---~~W~CPI--C~k~~~~~dL~ 304 (371)
T 3i2d_A 241 LTTTSTIMSLQCPISYTRMKYPSK---SINCKHLQCFD-ALWFLHSQLQI---PTWQCPV--CQIDIALENLA 304 (371)
T ss_dssp ---CEEEEESBCTTTSSBCSSEEE---ETTCCSSCCEE-HHHHHHHHHHS---CCCBCTT--TCCBCCGGGEE
T ss_pred eeeeeeEEeecCCCccccccccCc---CCcCCCcceEC-HHHHHHHhhcC---CceeCCC--CCcccCHHHee
Confidence 333334556788888777765544 47899996666 34555554443 4569999 99888776654
No 212
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.88 E-value=47 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=17.9
Q ss_pred ccCCCCCceeeec--C--CCceeEe-ecCC
Q 024566 182 ARCPACGHCVERK--D--GCSVVMC-RCNT 206 (265)
Q Consensus 182 k~CP~C~~~iek~--~--GCnhm~C-~C~~ 206 (265)
++||.|+.+|++. + |-.-..| +|..
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccc
Confidence 4899999999874 4 6665666 4553
No 213
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.66 E-value=46 Score=28.81 Aligned_cols=36 Identities=22% Similarity=0.560 Sum_probs=26.7
Q ss_pred CCCcccccccccccccccccccccC--CCCChhHHHHHHHHH
Q 024566 17 GGGSSFTCEICIEPMAASKKFKNRN--LCTHPFCQDCIARYI 56 (265)
Q Consensus 17 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 56 (265)
++.....|.+|-+... ++... .|...||++|+...+
T Consensus 89 ~DG~~~yCr~C~~Gg~----l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSGET----LLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCCSS----CEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCCCe----EEEeCCCCCCcchHHHHHHHhc
Confidence 3556789999987542 22244 789999999999877
No 214
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.37 E-value=41 Score=22.24 Aligned_cols=29 Identities=24% Similarity=0.749 Sum_probs=17.6
Q ss_pred CcccCCCCCceeeecCCCceeEe-ecCCce
Q 024566 180 KWARCPACGHCVERKDGCSVVMC-RCNTRF 208 (265)
Q Consensus 180 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 208 (265)
.--.||.|+..-.|..+-.-=.| +|+..|
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 34679999987665544444455 355443
No 215
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=21.30 E-value=55 Score=24.69 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=19.4
Q ss_pred CccccCCcCc-ccc----eeccccccCCcCeeeCCCccccc
Q 024566 109 ERSYCPNTNC-MAL----VVNECERSGKVKKTQCPNCKQWF 144 (265)
Q Consensus 109 ~~~~Cp~~~C-~~~----~~~~~~~~~~~~~~~C~~C~~~~ 144 (265)
+...||+|+| .+. +..-...+......+|..|.+.+
T Consensus 113 gvl~C~Np~CITn~~~Epvs~F~v~~~~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAIPTFKTLTEKPLKMRCEYCETII 153 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSCCEEEEEETTTTEEEETTTCCEE
T ss_pred CeEEcCCCCcccCCCCccccEEEEEcCCCCEEEeeCCCCEe
Confidence 3578999999 322 11100101113568888887653
No 216
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.45 E-value=42 Score=15.30 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=7.0
Q ss_pred eeeCCCccccc
Q 024566 134 KTQCPNCKQWF 144 (265)
Q Consensus 134 ~~~C~~C~~~~ 144 (265)
.+.|+.|++.|
T Consensus 3 ~~~C~~C~k~f 13 (27)
T 2kvh_A 3 PFSCSLCPQRS 13 (27)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCcChhh
Confidence 35677777655
No 217
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.06 E-value=38 Score=20.78 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=17.2
Q ss_pred eeeCCCcccccccccccccCC
Q 024566 134 KTQCPNCKQWFCFQCKLKWHA 154 (265)
Q Consensus 134 ~~~C~~C~~~~C~~C~~~~H~ 154 (265)
--.|..|+..+|.+|+..+..
T Consensus 25 Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 25 GHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CEEBTTTCCEECTTSEEEEES
T ss_pred CccccccCCeeecccCCEeee
Confidence 357889999999999987654
Done!