BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024567
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
Length = 253
Score = 294 bits (753), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 133/170 (78%), Positives = 157/170 (92%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQH+K+RQRVVATAVTYMRR YTRKS+TEY+P LVAPTCLYLA KAEES V A+LLVFY
Sbjct: 51 LAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFY 110
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+KK+Y+DEK+RYE+KDILEMEMK+LEALN+YLVVFHPYRSL +FLQD+G+ND +MTHL+W
Sbjct: 111 MKKLYADEKFRYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQDSGINDTSMTHLTW 170
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
G++NDTY+MDLIL+HPP LI LACIYIASV++EKD WFEEL VDMN+V
Sbjct: 171 GLVNDTYRMDLILIHPPFLITLACIYIASVHKEKDIKTWFEELSVDMNIV 220
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2
SV=1
Length = 257
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/171 (79%), Positives = 154/171 (90%), Gaps = 3/171 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQ VKVRQRV+ATAVTY RR YTRKSMTEYDP LVAPTCLYLASK EESTVQARLLVFY
Sbjct: 51 LAQQVKVRQRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFY 110
Query: 154 IKKI-YSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLS 212
IKK+ SDEKYR+E+KDILEMEMK+LEAL+YYLVV+HPYR L+Q LQDAG+ D +T +
Sbjct: 111 IKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITD--LTQFA 168
Query: 213 WGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
WGI+NDTYKMDLIL+HPP++IALACIYIASV ++KD T WFEELRVDMN+V
Sbjct: 169 WGIVNDTYKMDLILIHPPYMIALACIYIASVLKDKDITLWFEELRVDMNIV 219
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2
Length = 253
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 151/170 (88%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LAQH+KVRQRVVATA+TYMRR Y RKSM E++P LVA TCLYLASKAEES VQAR LVFY
Sbjct: 51 LAQHIKVRQRVVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFY 110
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
IK++Y DE +YE+KDIL MEMK+LEAL+YYLVVFHPYRSL +FLQDA +ND+NM ++W
Sbjct: 111 IKRLYPDEYNKYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQDAALNDVNMNQITW 170
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
GI+NDTYKMDLILVHPP+ IALACIYIASV+REKD TAWFE+L DMN+V
Sbjct: 171 GIVNDTYKMDLILVHPPYRIALACIYIASVHREKDITAWFEDLHEDMNLV 220
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 17/224 (7%)
Query: 54 TNSFWTKKTWM-WRNLLTEKRASLLKITSS-----LRCRCPTIYRNLAQHVKVRQRVVAT 107
+FW ++ W +L ++R LK S L+ + + L +H+K+RQ+V+AT
Sbjct: 2 AGNFWQSSHYLQW--ILDKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIAT 59
Query: 108 AVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE-------STVQARLLVFYIKKIYSD 160
A Y +R Y R S+ DP L+APTC++LASK EE S + A V + Y+
Sbjct: 60 ATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRFSYAS 119
Query: 161 EK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDT 219
K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+NDT
Sbjct: 120 PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV-LLPLAWRIVNDT 178
Query: 220 YKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
Y+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 179 YRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 222
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDV-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 138/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y++ +LE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYKMNHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 54 TNSFWTKKTWM-W----RNLLTEKRASLLKITSS----LRCRCPTIYRNLAQHVKVRQRV 104
+FW ++ W ++LL E++ L ++ L+ + + L +H+K+RQ+V
Sbjct: 2 AGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLL-----VFYIKKI 157
+ATA Y +R Y R S+ DP L+APTC++LASK EE V RL+ V +
Sbjct: 62 IATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFS 121
Query: 158 YSDEK-YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
Y+ K + Y + ILE E +LE ++ L+V+HPYR L+Q++QD G D+ + L+W I+
Sbjct: 122 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263
NDTY+ DL L++PP +IALAC+++A V ++KD WF EL VDM +
Sbjct: 181 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKI 227
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 111/171 (64%), Gaps = 3/171 (1%)
Query: 90 IYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARL 149
+ +NL +K+RQR ++TA+ Y +R Y + S + +P LVA TCLYL+SK EE QA+
Sbjct: 47 VIQNLGNALKLRQRAISTAIVYFKRFYLKNSFVDCEPRLVAVTCLYLSSKVEECITQAKK 106
Query: 150 LVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMT 209
+K+I D + Y + DILE E +LE L++ L+++HPY+SL +LQ +G++ ++
Sbjct: 107 CAAKMKEI--DHSFNYLMNDILECEFFVLEELDFCLIIYHPYKSLPFYLQSSGLDPASI- 163
Query: 210 HLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDM 260
+ WGI+ND+Y+ D+ L++PP ++ L CI + S +KD W EL V+M
Sbjct: 164 EIIWGIVNDSYRTDVCLLYPPFVVGLGCILLGSYLLKKDIKQWLSELNVEM 214
>sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3
SV=1
Length = 267
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 19/229 (8%)
Query: 54 TNSFWTK---KTWMW--RNLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRV 104
+FW + W+ ++LL E++ LL + + + N L + +K+RQ+V
Sbjct: 2 AGNFWQSSHSQQWILDKQDLLRERQHDLLSLNEDEYQKVFIFFANVIQVLGEQLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLLVF---YIKKIYS 159
+ATA Y +R Y R S+ DP L+APTC+ LASK EE V +RL+ IK +S
Sbjct: 62 IATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFS 121
Query: 160 ---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
+++ Y ILE E +LE L+ L+V+ PYR L+Q +QD G D +T LSW I+
Sbjct: 122 YAYTQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT-LSWRIV 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNT-AWFEELRVDMNVVS 264
ND+ + D+ L++PP+ IA+AC+ IA V +KD+T WF EL VD++ V
Sbjct: 181 NDSLRTDVCLLYPPYQIAIACLQIACVILQKDSTKQWFAELNVDLDKVQ 229
>sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1
Length = 267
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 14/211 (6%)
Query: 67 NLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRVVATAVTYMRRCYTRKSMT 122
+LL E++ LL + + + N L + +K+RQ+V+ATA Y +R Y R S+
Sbjct: 20 DLLRERQHDLLALNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKRFYARNSLK 79
Query: 123 EYDPHLVAPTCLYLASKAEESTV--QARLLVF---YIKKIYS---DEKYRYEVKDILEME 174
DP L+APTC+ LASK EE V +RL+ IK +S +++ Y ILE E
Sbjct: 80 NIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECE 139
Query: 175 MKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIA 234
+LE L+ L+V+ PYR L+Q +QD G D +T LSW I+ND+ + D+ L++PP+ IA
Sbjct: 140 FYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLT-LSWRIVNDSLRTDVCLLYPPYQIA 198
Query: 235 LACIYIASVYREKDNT-AWFEELRVDMNVVS 264
+AC+ IA V +KD T WF EL VD++ V
Sbjct: 199 IACLQIACVILQKDATKQWFAELNVDLDKVQ 229
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 18/228 (7%)
Query: 54 TNSFWTK---KTWMW--RNLLTEKRASLLKITSSLRCRCPTIYRN----LAQHVKVRQRV 104
+FW + W+ ++L+ E++ L +T + + N L + +K+RQ+V
Sbjct: 2 AGNFWQSSHHQQWILDKQDLIRERQHDLKNLTEEEYQKIFMFFANVIQVLGEQLKLRQQV 61
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--QARLLV---FYIKKIYS 159
+ATA Y +R Y R S+ DP L+APTC+ LASK EE V +RL+ IK +S
Sbjct: 62 IATATVYFKRFYARNSLKCIDPLLLAPTCILLASKVEEFGVISNSRLITTCQTVIKNKFS 121
Query: 160 ---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGIL 216
+++ Y ILE E +LE L+ L+V+ PYR L+Q +QD G D +T L+W ++
Sbjct: 122 YAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLIQDIGQEDQLLT-LTWRLI 180
Query: 217 NDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVS 264
ND+ + D+ L++PP+ IA+ C+ IA V +K+ AWF EL VDM V
Sbjct: 181 NDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKAWFAELNVDMEKVQ 228
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 114/184 (61%), Gaps = 9/184 (4%)
Query: 89 TIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV--Q 146
I + L + +K+RQ+V+ATA Y +R Y R S+ DP L+APTC+ L+SK EE V
Sbjct: 46 NIIQVLGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCILLSSKVEEFGVISN 105
Query: 147 ARLLV---FYIKKIYS---DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200
+RL+ IK +S +++ Y ILE E +LE L+ L+V+ PYR L+Q +QD
Sbjct: 106 SRLITTCQTVIKNKFSYAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLMQD 165
Query: 201 AGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDM 260
G + +T L+W ++ND+ + D+ L++PP+ IA+ C+ IA V +K+ +WF EL VDM
Sbjct: 166 IGQEEQLLT-LTWRLINDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKSWFAELNVDM 224
Query: 261 NVVS 264
+ V
Sbjct: 225 DKVQ 228
>sp|Q6CAC7|SSN8_YARLI RNA polymerase II holoenzyme cyclin-like subunit OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SSN8 PE=3 SV=1
Length = 280
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 83 LRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE 142
+R T+ L Q++ +RQR++ATA Y+ R +T+ E +P+LV T +Y+A K EE
Sbjct: 48 VRVYLHTLIHLLGQNLSIRQRILATAEVYLTRFHTKVPFGEINPYLVVATAVYVACKVEE 107
Query: 143 STVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAG 202
R + + ++ D ++ I E E ++E L YLV+FHPY+SL+Q
Sbjct: 108 HPQHIRTITSEARSLWPD-YISHDPTKIAECEFYLIEELGTYLVIFHPYKSLMQISDAMA 166
Query: 203 MNDINMT------HLSWGILNDTYKMDLILVHPPHLIALACIYIASVYR 245
++ +T ++W ++ND+Y DL L++PPH++A+ACIY+ V R
Sbjct: 167 RSNAQITMAPEEIQVTWSMINDSYITDLHLLNPPHIVAMACIYMTVVLR 215
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 19/203 (9%)
Query: 60 KKTWMW-RNLLTEKRASLLKITSSLRCRCP-------TIYRN-----LAQHVKVRQRVVA 106
+K W++ ++ L RA L +L P IY N L + + +RQ+ +A
Sbjct: 11 RKHWLFTKDELAAMRAKLEAEEPNLVASFPLPQLRHLNIYFNQQINRLGKRMGLRQQALA 70
Query: 107 TAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIY-SDEKYRY 165
TA Y++R YT+ + +PH V T LYLA K EE RL+ + + +D + +
Sbjct: 71 TAQVYIKRFYTKVEIRRTNPHHVLVTALYLACKMEECPQHIRLMANEARGFWPTDFQSQT 130
Query: 166 EVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM--NDINMTHLSWGILNDTYKMD 223
EV I E E ++ ++ +L+V PYR+L + G+ D+N L+W ++ND Y D
Sbjct: 131 EVARIGECEFYLISEMSSHLIVHSPYRTLTSLQGELGLAQEDVN---LAWSVINDHYMTD 187
Query: 224 LILVHPPHLIALACIYIASVYRE 246
L L+HPPH+IAL I +A V R+
Sbjct: 188 LPLLHPPHVIALTAILLALVLRQ 210
>sp|Q2GVK1|SSN8_CHAGB RNA polymerase II holoenzyme cyclin-like subunit OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=SSN8 PE=3 SV=2
Length = 364
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 107/190 (56%), Gaps = 6/190 (3%)
Query: 66 RNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRVVATAVTYMRRCYTRKS 120
R L ++ L+++ + R IY N L++ + +RQ+V+ATA Y++R YTR +
Sbjct: 25 RQRLDDEDPGLVQMFPLPQLRHLNIYFNQQINRLSKRIGLRQQVMATAQVYLKRFYTRIA 84
Query: 121 MTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEA 180
+ + +P+LV T LYLA K EE R++ + ++ + + ++ + E E ++
Sbjct: 85 IRQTNPYLVLTTVLYLACKMEECPQHIRMMTQEARSLWPSDLHGHDPARVGECEFSLISE 144
Query: 181 LNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYI 240
++ L+V PYRSL+ + G+ M+ L+W ++ND Y DL L+HPPH++AL + +
Sbjct: 145 MHSNLIVHQPYRSLLGVQDEFGLTQDEMS-LAWTVINDHYMTDLPLLHPPHVVALTAVLL 203
Query: 241 ASVYREKDNT 250
A V R NT
Sbjct: 204 ALVLRPSANT 213
>sp|Q1EAW8|SSN8_COCIM RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides
immitis (strain RS) GN=SSN8 PE=3 SV=2
Length = 303
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LA+ + VRQ+ +ATA Y++R YT+ + +P+LV T YLA K EE RL++
Sbjct: 58 LAKRLNVRQQALATAQVYVKRFYTKVEIRRTNPYLVLTTAFYLACKIEECPQHIRLVLGE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+ ++ E + I E E ++ +N L+V HPYR+L + + + L+W
Sbjct: 118 ARGLWP-EFIAPDSAKIGECEFWLISEMNSQLIVHHPYRTLSELQSYLSLTSDEIA-LAW 175
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYR 245
++ND Y DL+L+HPPH+I++ I+IA V++
Sbjct: 176 SVINDHYLTDLLLLHPPHVISVMAIFIAVVFK 207
>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like subunit OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=SSN8 PE=3 SV=2
Length = 346
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + +RQ +ATA Y+ R TR S+ E + +L+ TCLY+A K EE RL++
Sbjct: 64 LGRRLNIRQVALATAEIYLNRFLTRVSLKEINVYLLVTTCLYVACKIEECPQHIRLIISE 123
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQ---FLQDAG------MN 204
+ ++ E ++V + E E ++E ++ YL + HPY+SL+Q FL + +
Sbjct: 124 ARNLWP-EYIPHDVTKLAEFEFYLIEEMDSYLFLHHPYKSLIQIRDFLNENSAVFGFTLT 182
Query: 205 DINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREK 247
D + + +W ++ND+Y DL L+ PPH+IA+A IYI V ++
Sbjct: 183 DDELQN-AWSLVNDSYITDLHLLLPPHIIAVASIYITIVLKKN 224
>sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=SSN8 PE=3 SV=1
Length = 363
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
LA+++ +RQ+ +ATA YM+R YTR + +P LV T +YLA K EE + R +
Sbjct: 58 LAKNLSIRQQAIATAQVYMKRFYTRVEIRSTNPTLVLVTAVYLACKMEEMPLHIRNVSLE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGM-NDINMTHLS 212
KK++ E E+ I E E ++ ++ L+V PYR+L QD + ND ++ +S
Sbjct: 118 AKKVWPMETPSLEIAKIGECEFWLISEMSAQLIVHQPYRTLTALQQDFQLANDDHVLAVS 177
Query: 213 WGILNDTYKMDLILVHPPHLIALACIYIASVYR 245
+ LND + DL L++ PH IALA I +A V R
Sbjct: 178 F--LNDHFMTDLPLLYAPHTIALAAIMLALVLR 208
>sp|Q9C1M4|SSN8_GIBMO RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella
moniliformis GN=SSN8 PE=1 SV=1
Length = 319
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 56 SFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRVVATAVT 110
SF ++ R L E A L+++ + R IY N LA+ + +RQ+ +ATA
Sbjct: 15 SFTKEQLVTMRQKLEEDNAELVRMFPLPQQRRLYIYFNQQLIRLAKRLTIRQQSMATAQV 74
Query: 111 YMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDI 170
YM+R Y++ + +P+LV T +YLA K EES RL+V ++++ D + +
Sbjct: 75 YMKRFYSKVEIRRTNPYLVIATAIYLACKIEESPQHIRLIVTEARQMWGD-LVAIDTSKL 133
Query: 171 LEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPP 230
E E ++ + L+VF PYR++ + + D + L+ ++ND + DL L++PP
Sbjct: 134 GECEFFMISEMRSQLIVFQPYRTITALRNELSLVD-DEVQLARSVINDHFMTDLPLLYPP 192
Query: 231 HLIALACIYIASVYREKDN 249
H+IA+ I +A V R ++
Sbjct: 193 HIIAMVAILLALVLRPNNS 211
>sp|Q5BBA8|SSN8_EMENI RNA polymerase II holoenzyme cyclin-like subunit OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=ssn8 PE=3 SV=2
Length = 302
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 60 KKTWMW-RNLLTEKRASLLKITSSLRCRCP-------TIYRN-----LAQHVKVRQRVVA 106
+K W++ R L E R S + + P IY N L + + RQ+ +A
Sbjct: 11 RKHWLFTRERLAEIRESFKEKDKASHTHFPLPDQRLLNIYFNQQLIKLGKRMSTRQQALA 70
Query: 107 TAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYE 166
TA Y++R YT+ + +P+LV T YLA K EE R +V + ++ E +
Sbjct: 71 TAQVYIKRYYTKNEIRNTNPYLVLTTAFYLACKMEECPQHIRFVVSEARALWP-EFIVPD 129
Query: 167 VKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLIL 226
V + E E ++ + L+V HPYR+L + + + + L+W ++ND Y DL L
Sbjct: 130 VSKVGECEFSLISEMQAQLIVHHPYRTLSELQPELSLTS-DEVALAWSVINDHYLTDLSL 188
Query: 227 VHPPHLIALACIYIASVYREKDNTAW 252
++PPH+IA+ I +A V++ TA+
Sbjct: 189 LYPPHIIAVMAIIVAVVFKPSSQTAF 214
>sp|Q2UDB2|SSN8_ASPOR RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2
Length = 301
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVVTTAFYLACKMEECPQHIRFVVAE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+ + E +V + E E ++ +N L+V HPYR+L + + + + L+W
Sbjct: 118 ARNFWP-EFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSELQPELSLTS-DEVALAW 175
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYR 245
++ND Y DL L++PPH+IA+ I +A V++
Sbjct: 176 SVINDHYLTDLPLLYPPHVIAVMAIIVAVVFK 207
>sp|Q0CV29|SSN8_ASPTN RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1
Length = 301
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRTTTRQQALATAQVYIKRFYTKNDIRHTNPYLVITTAFYLACKMEECPQHIRFVVAE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+ + E +V + E E ++ +N L+V HPYR+L + + + + L+W
Sbjct: 118 ARSFWP-EFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSELTPELQLTS-DEVALAW 175
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYR 245
++ND Y DL L++PPH+IA+ I +A V++
Sbjct: 176 SVINDHYLTDLPLLYPPHVIAVMAIIVAVVFK 207
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ +ATA Y+ R + S+ E + +++ TC+YLA K E
Sbjct: 73 NLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVE 132
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA 201
E R LV + ++ E + + E E +LE L YL+V HPY+SL Q +Q
Sbjct: 133 ECPQYIRTLVSEARTLWP-EFIPPDPTKVTEFEFYLLEELESYLIVHHPYQSLKQIVQVL 191
Query: 202 GMNDINMTHLS------WGILNDTYKMDLILVHPPHLIALACIYIA 241
+T S W ++ND+Y D+ L++PPH+IA+AC++I
Sbjct: 192 KQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFIT 237
>sp|Q5A4H9|SSN8_CANAL RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN8 PE=3
SV=1
Length = 434
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + +RQ +ATA Y+ R TR S+ E + +L+ TC+Y+A K EE RL++
Sbjct: 64 LGRRLNIRQIALATAEIYLTRFLTRVSLKEINVYLLITTCIYVACKIEECPQHIRLILSE 123
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMN--------D 205
+ I+ E ++V + E E ++E ++ YL++ HPY+SL+Q + N
Sbjct: 124 ARNIWP-EYIPHDVTKLAEFEFYLIEEMDSYLLLHHPYKSLMQINEFLSNNYNVFGFKLT 182
Query: 206 INMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREK 247
+ +W ++ND+Y DL L+ PPH IA+A IYI V ++
Sbjct: 183 VEELQNAWSLINDSYITDLHLLLPPHTIAVAAIYITVVLKKN 224
>sp|Q4WZT9|SSN8_ASPFU RNA polymerase II holoenzyme cyclin-like subunit OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=ssn8 PE=3 SV=1
Length = 302
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 4/160 (2%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+ ++ E +V + E E ++ +N L+V HPYR+L + + + + L+W
Sbjct: 118 ARSLWP-EFITPDVSKLGECEFSLISEMNSQLIVHHPYRTLSELQPELSLTS-DEVALAW 175
Query: 214 GILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWF 253
++ND Y DL L++ PH+IA+ I +A V+ K N+ F
Sbjct: 176 SVINDHYLTDLPLLYAPHVIAVMAIIVAVVF--KPNSGNF 213
>sp|Q6CP20|SSN8_KLULA RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SSN8 PE=3 SV=1
Length = 304
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ + TA Y+ R R S+ E + +L+ TC+YLA K E
Sbjct: 71 NLRIYCYFLIMKLGRRLNIRQCALVTAHVYLSRFLLRASVREVNLYLLITTCIYLACKVE 130
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ-- 199
E R LV + ++ E +V + E E ++E L YL+V HPYRSL Q +
Sbjct: 131 ECPQHIRTLVNEARSLWP-EFIPPDVTKVTEFEFYLIEELQSYLIVHHPYRSLEQIEKAL 189
Query: 200 -----DAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIAS--VYREKDNT-- 250
+ ++D + + W ++ND+Y D+ L++ PH+IA++C++ S +++ +D+T
Sbjct: 190 SSEKYNYKLSDDELQKI-WSLINDSYTTDVHLLYSPHVIAISCLFAVSCIIHKPEDSTKR 248
Query: 251 ----AWFEELRVDMNVVSF 265
+ E +V++ V F
Sbjct: 249 ANINMFIAETQVNLEQVMF 267
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + VRQ +ATA Y+ R + S+ E + +L+ TC+YLA K E
Sbjct: 72 NLRIYCYFLIMKLGRRLNVRQYALATAHVYLARFCLKASIREVNLYLLVTTCIYLACKVE 131
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA 201
E R LV + ++ E + + E E ++E L Y++V +PYR++ Q
Sbjct: 132 ECPQHIRTLVNEARSLWP-EFVPPDPTKVTEFEFYLIEELQSYMIVHYPYRAMEQIAAAL 190
Query: 202 GMNDINMT------HLSWGILNDTYKMDLILVHPPHLIALACIYIASVYR 245
N+ SW ++ND+Y D+ L++PPH+IA+AC++I R
Sbjct: 191 RRPPYNLVLSPDDLQNSWSLINDSYITDVHLLYPPHVIAMACLFITVCLR 240
>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SSN8 PE=3 SV=1
Length = 339
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
+LR C + L + + +RQ +ATA Y+ R + S+ E + +L+ TC+YLA K E
Sbjct: 91 NLRIYCYFLIMKLGRRLNIRQYALATAHIYLSRFLLKASVREVNLYLLVTTCVYLACKVE 150
Query: 142 ESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA 201
E R LV + ++ E + + E E ++E L YL+V HPY+S+ Q ++
Sbjct: 151 ECPQYIRTLVSEARSLWP-EFIPPDPTKVTEFEFYLIEELQCYLIVHHPYKSMEQIVEAL 209
Query: 202 GMNDINMTHLS------WGILNDTYKMDLILVHPPHLIALACIYIA 241
+T S W ++ND++ D+ L + PH+IA+AC++I
Sbjct: 210 KEEPFKLTFTSDELQNCWSLINDSFINDVHLTYAPHIIAMACLFIT 255
>sp|O94503|SRB11_SCHPO RNA polymerase II holoenzyme cyclin-like subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srb11 PE=1 SV=1
Length = 228
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 90 IYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE-YDPHLVAPTCLYLASKAEESTVQAR 148
+ + +++RQRV+ATA+ +RR +K+ + + + TC+YL+ K EE V R
Sbjct: 38 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIR 97
Query: 149 LLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINM 208
+ ++S K + +I E+E +I+ L+ +L+V HPY SL Q D +N +
Sbjct: 98 TICNEANDLWS-LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQL 156
Query: 209 THLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREK 247
+W I+ND+Y L L+ PH +A A + I+ E
Sbjct: 157 -EFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 194
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 12/201 (5%)
Query: 56 SFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRC 115
S++ + + N L+ + LK S LR T ++L +KV Q +ATA+ + R
Sbjct: 36 SWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRF 95
Query: 116 YTRKSMTEYDPHLVAPTCLYLASKAEEST--VQARLLVFY----------IKKIYSDEKY 163
+ R+S + D +A C++LA K EE+ ++ +L+ Y +++I E Y
Sbjct: 96 FLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKEVY 155
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMD 223
+ + IL E +L L + L V HPY+ LV+ ++ + + ++W +ND +
Sbjct: 156 EQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTS 215
Query: 224 LILVHPPHLIALACIYIASVY 244
L L PH IA I++A+ +
Sbjct: 216 LCLQFKPHHIAAGAIFLAAKF 236
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 77 LKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYL 136
LK + LR T ++L +KV Q +ATA+ + R + R+S + D +A C++L
Sbjct: 53 LKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFL 112
Query: 137 ASKAEESTVQARLLVFYI------------KKIYSDEKYRYEVKDILEMEMKILEALNYY 184
A K EE+ + ++F +KI E Y + + IL E +L L +
Sbjct: 113 AGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQKEVYEQQKELILNGEKIVLSTLGFD 172
Query: 185 LVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVY 244
L V+HPY+ LV+ ++ + + ++W +ND + L L PH IA I++A+ +
Sbjct: 173 LNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKF 232
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 21/225 (9%)
Query: 37 GKGGVKKWLPISGHRRTTNSFWTKKTWMWRNLLTEKRASLL-----KITSSLRCRCPTIY 91
G+ GV + S ++ + W + R + E S L K + LR T
Sbjct: 12 GESGVSSYSRNSNEKQDEVARW----YFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFL 67
Query: 92 RNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST--VQARL 149
++L +KV Q +ATA+ + R + R+S D +A C++LA K EE+ ++ +
Sbjct: 68 QDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVI 127
Query: 150 LVFY----------IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQ 199
+V Y +KI E Y + + IL E +L L + V+HPY+ LV+ ++
Sbjct: 128 VVSYEIIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIK 187
Query: 200 DAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVY 244
+ + ++W +ND + L L PH IA I++A+ +
Sbjct: 188 KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKF 232
>sp|Q6BYF8|SSN8_DEBHA RNA polymerase II holoenzyme cyclin-like subunit OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SSN8 PE=3 SV=2
Length = 345
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + VRQ +ATA YM R + S+ E + +L+ TCLY A K EE RL+
Sbjct: 64 LGRRLNVRQIALATAEIYMSRFLIKVSLKEINVYLLVTTCLYAACKIEECPQHIRLITSE 123
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQF---------LQDAGMN 204
+ ++ E +V + E E ++E ++ +LV+ HPYRSL+Q L ++
Sbjct: 124 ARNLWP-EYIPQDVTKLAEFEFYLIEEMDSFLVLHHPYRSLLQIRDYLNENFALYGFSLS 182
Query: 205 DINMTHLSWGILNDTYKMDLILVHPPH 231
D + + SW ++ND+Y DL L+ PPH
Sbjct: 183 DDELQN-SWSLINDSYITDLHLLLPPH 208
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 12/201 (5%)
Query: 56 SFWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRC 115
S++ + + N + + LK S LR T ++L +KV Q +ATA+ + R
Sbjct: 35 SWYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRF 94
Query: 116 YTRKSMTEYDPHLVAPTCLYLASKAEEST--VQARLLVFY----------IKKIYSDEKY 163
Y R+S + D +A C++LA K EE+ ++ +LV Y ++I E Y
Sbjct: 95 YLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVY 154
Query: 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMD 223
+ + IL E +L L + L V HPY+ LV+ ++ + + ++W +ND +
Sbjct: 155 DQQKELILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTS 214
Query: 224 LILVHPPHLIALACIYIASVY 244
L L PH IA I++A+ +
Sbjct: 215 LCLQFKPHHIAAGAIFLAAKF 235
>sp|A1C7R6|SSN8_ASPCL RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ssn8 PE=3 SV=2
Length = 302
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 94 LAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153
L + + RQ+ +ATA Y++R YT+ + +P+LV T YLA K EE R +V
Sbjct: 58 LGKRMSTRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGE 117
Query: 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSW 213
+ ++ E +V + E E ++ +N L+V HPYR+L + + + L+W
Sbjct: 118 ARSLWP-EFITPDVSKLGECEFSLISEMNSQLIVHHPYRTLSGLQSELSLTSDEVA-LAW 175
Query: 214 GILNDTYKMDLILVHPPH 231
++ND Y DL L++ PH
Sbjct: 176 SVINDHYLTDLPLLYSPH 193
>sp|Q4P101|SSN8_USTMA RNA polymerase II holoenzyme cyclin-like subunit OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SSN8 PE=3 SV=1
Length = 393
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 61 KTWMW-RNLLTEKRASLLKITSSLRCRCPTIYRN-----LAQHVKVRQRVVATAVTYMRR 114
W+ R L R L+ + L C ++ + + + + +RQRV A+A + RR
Sbjct: 12 NNWLLDRPQLELARKEDLRYATRLECAALGVFFSNLLSLICKRLNLRQRVTASANVFFRR 71
Query: 115 CYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKD---IL 171
+ + S + DP LV TC+Y+A+K EES + + V + +++ +R D +
Sbjct: 72 FFAKNSYSALDPFLVCATCVYVAAKVEESPIHIKSAVAEATRSFTEHGFRGMPTDHSSLA 131
Query: 172 EMEMKILEALNYYLVVFHPYRSLVQFLQDAG 202
EME +LE + + +V+FH YRSL+ +D G
Sbjct: 132 EMEFYLLEEMEFDMVLFHSYRSLIVMFEDYG 162
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 211 LSWGILNDTYKMDLILVHPPHLIALACIYIA 241
+ W ILNDTYK D+ L++PP+++ALA I++
Sbjct: 239 MCWFILNDTYKTDIPLMYPPYMVALASIWLG 269
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 93 NLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVF 152
N+ +K+ Q +ATA Y R Y R S+ Y + VA TC++LA+K E+S + R +V
Sbjct: 53 NVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVI 112
Query: 153 YIKKIYS-------DEKYR--YEVKD-ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAG 202
K+ DE+ + + +D IL E +LEAL + V HPY ++ F++
Sbjct: 113 NCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFV 172
Query: 203 MNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
+D N+T ++W +ND+ + L++ P IA A A
Sbjct: 173 ADDKNVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFA 211
>sp|Q9TYP2|CCNC_CAEEL Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=3 SV=2
Length = 302
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 22/188 (11%)
Query: 99 KVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST-------VQARLLV 151
K+RQ+V+ATA+ Y +R Y R+S + P LVA T L+LA K EE T ++ +V
Sbjct: 65 KLRQQVIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTAIV 124
Query: 152 FYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD----------- 200
+ + E + + + E ++E L+ LVV H R + + L+D
Sbjct: 125 LPKRWGVTFETTSTKNGVVYDSEFILVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIA 184
Query: 201 -AGMNDINMTHLSWG-ILNDTYKMDLILVHPPHLIALACIYIAS--VYREKDNTAWFEEL 256
+ D+ + ND+ + D+ L+ PPH+I L+ I +A + R ++ AW E+
Sbjct: 185 NQPIKDLEAIEAQCQKVANDSLRCDVSLIFPPHVIGLSSIMVAMELMGRGEELEAWLVEV 244
Query: 257 RVDMNVVS 264
D V+
Sbjct: 245 DTDFEKVT 252
>sp|P0C654|CCNC_CAEBR Cyclin-C OS=Caenorhabditis briggsae GN=cic-1 PE=3 SV=1
Length = 298
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 20/183 (10%)
Query: 99 KVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST-------VQARLLV 151
K+RQ+V+ATA+ Y +R Y R+S + P LVA T L+LA K EE T ++ LV
Sbjct: 65 KLRQQVIATAIVYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTALV 124
Query: 152 FYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHL 211
+ + E + + + E ++E L+ LVV H R + + L+D + + T+
Sbjct: 125 LPKRWGVAFETNSAKNGVLYDSEFILVEILDCCLVVHHATRPMFELLEDWKQHTLTSTNT 184
Query: 212 -----------SWGILNDTYKMDLILVHPPHLIALACIYIAS--VYREKDNTAWFEELRV 258
++NDT + D+ L+ PH I LA I + + R ++ W E+
Sbjct: 185 PVKDFDQIEIQCQKVVNDTLRCDVGLMFAPHCIGLASISVGMELMGRGEELEDWLVEVDT 244
Query: 259 DMN 261
DM+
Sbjct: 245 DMD 247
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 89 TIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQAR 148
+ + L Q + Q+ +ATA+ +R +TR+S+T+ DP VA C+++A K E S A
Sbjct: 39 SFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAG 98
Query: 149 LLVFYIKKIYSDEKYRYEVKDILEM-----EMKILEALNYYLVVFHPYRSLVQFLQDAGM 203
+VF ++ +++ +V + L+M E +L L L + HPY+ ++ +++ +
Sbjct: 99 DVVFVSYRVLFNKEPLRDVFERLKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVK 158
Query: 204 NDIN--MTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
+ + ++ +ND+ + L L P IA A IYI
Sbjct: 159 TEDGRRLCQAAFNFVNDSLRTSLCLQFGPSQIASAAIYIG 198
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2
Length = 460
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 57 FWTKKTWMWRNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCY 116
F++++ + RN + + LK + LR T L + +KV Q +ATA+ + R +
Sbjct: 32 FFSREE-IERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFF 90
Query: 117 TRKSMTEYDPHLVAPTCLYLASKAEESTVQ-ARLLVFYIKKIYSDE---KYRYEVKD--- 169
R+S + D +A C+ LA K EE+ V +++ ++I+ + R EV D
Sbjct: 91 LRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQRKEVYDQQK 150
Query: 170 --ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMND--INMTHLSWGILNDTYKMDLI 225
+L E +L LN+ L + HPY+ LV+ ++ + D + +W +ND + L
Sbjct: 151 ELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVNDCLRTTLC 210
Query: 226 LVHPPH 231
L + PH
Sbjct: 211 LQYQPH 216
>sp|Q6NRK9|FA58A_XENLA Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2
Length = 244
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 105 VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKK-------- 156
+ATA T + Y S+ YDPHLVA + +YLA K EE ++ R ++ +
Sbjct: 44 IATACTIYHKFYKETSLENYDPHLVAMSAIYLAGKVEEQHLRTRDIINVCHRYNNPGSEP 103
Query: 157 IYSDEKYRYEVKD-ILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDIN-------- 207
+ D K+ +E++D I+ E+ +L LN+ + HP++ L+ +L N +N
Sbjct: 104 LEVDSKF-WELRDNIVHCELLMLRMLNFRVSFQHPHKYLLHYLISLK-NWMNRHSWERTP 161
Query: 208 MTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
+ +W +L D+Y DL L + P IA+A +Y A
Sbjct: 162 IATAAWALLRDSYHGDLCLRYEPQQIAVAVLYFA 195
>sp|O60563|CCNT1_HUMAN Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1
Length = 726
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 36 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVE 95
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 96 E---QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 152
Query: 190 PYRSLVQFLQDA-GMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
P+ +V+ Q D+ T + N + L + P ++A CI++A
Sbjct: 153 PHTHVVKCTQLVRASKDLAQTSY-FMATNSLHLTTFSLQYTPPVVACVCIHLA 204
>sp|Q8HXN7|CCNT1_PANTR Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1
Length = 725
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 35 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVE 94
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 95 E---QPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 151
Query: 190 PYRSLVQFLQDA-GMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
P+ +V+ Q D+ T + N + L + P ++A CI++A
Sbjct: 152 PHTHVVKCTQLVRASKDLAQTSY-FMATNSLHLTTFSLQYTPPVVACVCIHLA 203
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3
Length = 724
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 47 ISGHRRTTNSFWTKKTWMWRNLLTEKRASLLKITS----SLRCRCPTIYRNLAQHVKVRQ 102
+ G R+ N W + R L + + S S R + + +++ Q + V Q
Sbjct: 1 MEGERKNNNKRW----YFTREQLENSPSRRFGVDSDKELSYRQQAANLLQDMGQRLNVSQ 56
Query: 103 RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYS--- 159
+ TA+ YM R Y +S T++ + +AP L+LA+K EE Q + L IK ++
Sbjct: 57 LTINTAIVYMHRFYMIQSFTQFHRYSMAPAALFLAAKVEE---QPKKLEHVIKVAHTCLH 113
Query: 160 ---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA-GMNDINMT 209
E Y +V+D++ +E IL+ L + L + HP+ +V+ Q D+ T
Sbjct: 114 PQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQT 173
Query: 210 HLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
+ N + L + P ++A CI++A
Sbjct: 174 SY-FMATNSLHLTTFSLQYTPPVVACVCIHLA 204
>sp|Q9XT26|CCNT1_HORSE Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1
Length = 727
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 82 SLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAE 141
S R + + +++ Q + V Q + TA+ YM R Y +S T++ + VAP L+LA+K E
Sbjct: 36 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRNSVAPAALFLAAKVE 95
Query: 142 ESTVQARLLVFYIKKIYS------------DEKYRYEVKDILEMEMKILEALNYYLVVFH 189
E Q + L IK ++ E Y +V+D++ +E IL+ L + L + H
Sbjct: 96 E---QPKKLEHVIKVAHACLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDH 152
Query: 190 PYRSLVQFLQDA-GMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241
P+ +V+ Q D+ T + N + L + P ++A CI++A
Sbjct: 153 PHTHVVKCTQLVRASKDLAQTSY-FMATNSLHLTTFSLQYTPPVVACVCIHLA 204
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2
Length = 446
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 16/194 (8%)
Query: 81 SSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKA 140
+ LR + R++ +++ Q +ATA R Y R+S + + VA C++LASK
Sbjct: 33 AELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKI 92
Query: 141 EEST--VQARLLVFY----------IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVF 188
E++ +Q ++V Y +IY E + + IL E +L + + +
Sbjct: 93 EDTPCPLQRVIIVAYETMYRKDCNAAHRIYQKEVLEKQKELILVGETLLLSTIRFDFNIQ 152
Query: 189 HPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYRE-- 246
HPY L L+ G+ + + ++ ++ND + L++ PH IA +Y+A+ +
Sbjct: 153 HPYEPLKLALKKLGIFQMEVKQVAVNLINDAIRTTLVVQFKPHYIAAGSLYLAAKFNNFR 212
Query: 247 --KDNTAWFEELRV 258
D W+ E V
Sbjct: 213 LPSDGKVWWHEFDV 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,045,252
Number of Sequences: 539616
Number of extensions: 3721512
Number of successful extensions: 8618
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 8321
Number of HSP's gapped (non-prelim): 208
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)