Query 024567
Match_columns 265
No_of_seqs 195 out of 1306
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgf_B Cyclin-C; protein kinas 100.0 1.2E-44 4E-49 319.6 17.9 211 53-264 3-230 (285)
2 2ivx_A Cyclin-T2; transcriptio 100.0 1.7E-39 6E-44 282.6 18.6 202 61-263 3-227 (257)
3 2i53_A Cyclin K; cell cycle, t 100.0 2.2E-39 7.6E-44 281.9 18.7 204 61-264 13-239 (258)
4 1zp2_A RNA polymerase II holoe 100.0 4.1E-40 1.4E-44 283.0 13.8 199 57-263 1-207 (235)
5 2pk2_A Cyclin-T1, protein TAT; 100.0 3.9E-38 1.3E-42 285.6 11.5 197 61-258 10-227 (358)
6 1jkw_A Cyclin H; cell cycle, c 100.0 8.7E-37 3E-41 273.6 16.5 174 82-258 55-238 (323)
7 2cch_B Cyclin A2, cyclin-A; co 100.0 4.2E-36 1.4E-40 261.7 13.3 180 75-263 30-215 (260)
8 2b9r_A Human cyclin B1; cell c 100.0 1.9E-35 6.6E-40 258.7 16.8 177 78-264 32-213 (269)
9 1g3n_C V-cyclin; cyclin-depend 100.0 1.6E-35 5.5E-40 257.6 15.1 182 75-263 42-235 (257)
10 3g33_B CCND3 protein; Ser/Thr 100.0 1.2E-34 4E-39 257.9 14.6 182 75-263 62-254 (306)
11 2w96_A G1/S-specific cyclin-D1 100.0 2.3E-34 7.7E-39 252.2 15.1 182 75-263 48-244 (271)
12 2f2c_A Cyclin homolog, V-cycli 100.0 2.6E-34 8.8E-39 249.6 14.6 166 75-247 43-212 (254)
13 1f5q_B Gamma herpesvirus cycli 100.0 6.8E-33 2.3E-37 240.0 12.0 161 75-242 40-204 (252)
14 1c9b_A General transcription f 100.0 4.6E-32 1.6E-36 228.5 16.7 171 84-264 5-177 (207)
15 1w98_B Cyclin E, G1/S-specific 100.0 3E-32 1E-36 240.0 14.8 177 75-263 41-229 (283)
16 1ais_B TFB TFIIB, protein (tra 99.9 3.4E-27 1.2E-31 197.6 15.1 170 84-263 9-182 (200)
17 3k7a_M Transcription initiatio 99.9 1.8E-25 6.2E-30 201.8 6.5 171 84-264 126-310 (345)
18 4bbr_M Transcription initiatio 99.8 9.7E-20 3.3E-24 164.0 8.9 153 85-247 127-291 (345)
19 1ais_B TFB TFIIB, protein (tra 98.2 4.9E-06 1.7E-10 68.7 9.4 89 88-185 109-197 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 98.1 3E-05 1E-09 67.3 11.2 104 87-200 77-184 (293)
21 1c9b_A General transcription f 97.8 8.2E-05 2.8E-09 61.5 9.0 88 88-184 103-190 (207)
22 4bbr_M Transcription initiatio 95.8 0.0014 4.9E-08 58.5 0.0 68 88-155 236-303 (345)
23 3k7a_M Transcription initiatio 95.8 0.0016 5.3E-08 58.2 0.0 68 88-155 236-303 (345)
24 3h4c_A Transcription factor TF 94.3 1.5 5.3E-05 35.7 13.5 68 86-153 14-84 (260)
25 1zp2_A RNA polymerase II holoe 93.9 0.09 3.1E-06 43.9 5.9 84 88-181 135-218 (235)
26 3rgf_B Cyclin-C; protein kinas 93.5 0.13 4.6E-06 44.2 6.5 83 88-181 158-240 (285)
27 2cch_B Cyclin A2, cyclin-A; co 92.3 0.28 9.5E-06 41.5 6.6 84 88-180 140-225 (260)
28 2i53_A Cyclin K; cell cycle, t 91.5 0.25 8.7E-06 41.6 5.5 94 88-182 152-250 (258)
29 2b9r_A Human cyclin B1; cell c 91.5 0.14 4.8E-06 43.7 3.8 57 88-144 139-195 (269)
30 2ivx_A Cyclin-T2; transcriptio 91.5 0.47 1.6E-05 39.9 7.1 56 191-247 35-90 (257)
31 2f2c_A Cyclin homolog, V-cycli 91.2 0.74 2.5E-05 38.7 8.1 84 88-180 153-245 (254)
32 1g3n_C V-cyclin; cyclin-depend 91.2 0.96 3.3E-05 38.1 8.8 84 88-180 152-245 (257)
33 1jkw_A Cyclin H; cell cycle, c 90.9 0.5 1.7E-05 41.4 6.9 56 192-248 62-119 (323)
34 2pk2_A Cyclin-T1, protein TAT; 89.6 0.57 2E-05 41.7 6.2 56 191-247 42-97 (358)
35 2w96_A G1/S-specific cyclin-D1 86.6 2.2 7.5E-05 36.1 7.8 89 88-185 158-259 (271)
36 3g33_B CCND3 protein; Ser/Thr 85.8 3.4 0.00012 35.7 8.7 93 88-185 172-269 (306)
37 3m03_A ORC6, origin recognitio 84.1 5 0.00017 28.5 7.3 61 91-152 6-71 (95)
38 2qdj_A Retinoblastoma-associat 75.7 5 0.00017 34.8 6.0 64 91-154 6-73 (304)
39 2r7g_A PP110, retinoblastoma-a 73.2 5.4 0.00018 35.2 5.7 68 88-155 219-289 (347)
40 1w98_B Cyclin E, G1/S-specific 72.6 20 0.00067 30.4 9.1 52 88-139 152-214 (283)
41 4ell_A Retinoblastoma-associat 70.3 7.8 0.00027 35.0 6.2 69 87-155 282-353 (411)
42 4elj_A Retinoblastoma-associat 63.1 16 0.00056 34.9 7.1 70 87-156 527-599 (656)
43 1f5q_B Gamma herpesvirus cycli 56.0 20 0.00068 29.9 5.8 56 192-248 54-109 (252)
44 4elj_A Retinoblastoma-associat 52.2 26 0.0009 33.5 6.5 62 91-154 8-75 (656)
45 2r7g_A PP110, retinoblastoma-a 39.3 70 0.0024 28.1 6.7 82 167-248 168-278 (347)
46 2wh0_Q Pkcev3, protein kinase 32.8 35 0.0012 18.0 2.3 18 167-184 12-29 (31)
47 4ell_A Retinoblastoma-associat 31.3 1E+02 0.0035 27.6 6.6 53 196-248 288-342 (411)
48 3o2t_A Symplekin; heat repeat, 24.4 3.7E+02 0.013 23.7 9.0 22 76-97 72-93 (386)
49 2pmi_B PHO85 cyclin PHO80, ami 20.9 2.4E+02 0.0082 24.0 6.7 73 190-263 77-155 (293)
No 1
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=319.62 Aligned_cols=211 Identities=39% Similarity=0.731 Sum_probs=187.7
Q ss_pred ccccccccC---cccc-hhhHHHHhhhhh-ccC----HHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCc
Q 024567 53 TTNSFWTKK---TWMW-RNLLTEKRASLL-KIT----SSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE 123 (265)
Q Consensus 53 ~~~~~~~~~---~w~~-~~~~~~~r~~~~-~~~----~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~ 123 (265)
||+|||.|+ +|+| ++++...|.++. .++ .++|..+++||.++|.+|+|+++|+++|++|||||+..+++.+
T Consensus 3 m~~~~w~Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~ 82 (285)
T 3rgf_B 3 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKS 82 (285)
T ss_dssp TTTCGGGSHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTT
T ss_pred ccchhhcccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 899999994 8999 577766655332 233 2468899999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhhccccchhh-HHHHHHHHHHhc-------CcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHH
Q 024567 124 YDPHLVAPTCLYLASKAEESTVQ-ARLLVFYIKKIY-------SDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLV 195 (265)
Q Consensus 124 ~~~~lva~acLflA~K~ee~~~~-i~~iv~~~~~~~-------~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~ 195 (265)
++++++|+||||||||+||++++ +++++.++..+. .++.+.++.++|++||+.||++|||++.++||++||.
T Consensus 83 ~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~ 162 (285)
T 3rgf_B 83 IDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLL 162 (285)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHH
T ss_pred cCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHH
Confidence 99999999999999999999985 889988775431 2333457889999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCCCchhhhhhhccCccccC
Q 024567 196 QFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVS 264 (265)
Q Consensus 196 ~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~~~~~W~~~~~~~~~~~~ 264 (265)
+|++.++.+. ++.+.|+.++++++.++.++.|+|+.||+||||+|..++|.+.+.||+.+++++++|.
T Consensus 163 ~~~~~l~~~~-~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~~~~~~~~l~ 230 (285)
T 3rgf_B 163 QYVQDMGQED-MLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKIL 230 (285)
T ss_dssp HHHHHHTCHH-HHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHTSCSCHHHHH
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChhhHHHHHCCCHHHHH
Confidence 9999999754 5899999999999999999999999999999999999999999999999999998764
No 2
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.7e-39 Score=282.55 Aligned_cols=202 Identities=21% Similarity=0.422 Sum_probs=172.2
Q ss_pred Ccccc-hhhHHH--Hhhhh--hccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHH
Q 024567 61 KTWMW-RNLLTE--KRASL--LKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLY 135 (265)
Q Consensus 61 ~~w~~-~~~~~~--~r~~~--~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLf 135 (265)
++|+| ++++.. .+.++ .+.+..+|..+++||.+++.+|+|+++|+++|++|||||+..+++.+.+++++|+||||
T Consensus 3 ~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~ 82 (257)
T 2ivx_A 3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALF 82 (257)
T ss_dssp GGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred CCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHH
Confidence 68999 455543 23333 23334689999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchhhHHHHHHHHHHhcC---------cchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH
Q 024567 136 LASKAEESTVQARLLVFYIKKIYS---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (265)
Q Consensus 136 lA~K~ee~~~~i~~iv~~~~~~~~---------d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~ 206 (265)
||||+||+++++++++.+++.+++ ++.+...+++|++||+.||++|||+++++||+.||.+|++.++.+.
T Consensus 83 lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~- 161 (257)
T 2ivx_A 83 LAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK- 161 (257)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH-
T ss_pred HHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc-
Confidence 999999999999999998876542 2333334899999999999999999999999999999999998764
Q ss_pred HHHHHHHHHHHHhc-CCccccccCHHHHHHHHHHHHHhhcCCC------chhhhhhhc--cCcccc
Q 024567 207 NMTHLSWGILNDTY-KMDLILVHPPHLIALACIYIASVYREKD------NTAWFEELR--VDMNVV 263 (265)
Q Consensus 207 ~i~~~A~~i~~d~~-~~~~~l~~~ps~iA~Aai~lA~~~~~~~------~~~W~~~~~--~~~~~~ 263 (265)
++.+.|++++++++ .+++++.|+|+.||+||||+|+.++|.+ +.+||+.++ +++++|
T Consensus 162 ~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 162 DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 58999999999998 4888999999999999999999999854 357999884 455443
No 3
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-39 Score=281.95 Aligned_cols=204 Identities=20% Similarity=0.446 Sum_probs=176.4
Q ss_pred Ccccc-hhhHHH--Hhhh--hhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHH
Q 024567 61 KTWMW-RNLLTE--KRAS--LLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLY 135 (265)
Q Consensus 61 ~~w~~-~~~~~~--~r~~--~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLf 135 (265)
++|++ ++++.. .+.+ +.+.+..+|..+++||.+++.+|+|+++|+++|++|||||+.++++++.+++++|+||||
T Consensus 13 ~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~ 92 (258)
T 2i53_A 13 PCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLF 92 (258)
T ss_dssp SSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred cCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHH
Confidence 68998 344433 2222 234556789999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchhhHHHHHHHHHHhcCcchhc----ccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH---HH
Q 024567 136 LASKAEESTVQARLLVFYIKKIYSDEKYR----YEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI---NM 208 (265)
Q Consensus 136 lA~K~ee~~~~i~~iv~~~~~~~~d~~~~----~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~---~i 208 (265)
||||+||.++++++++.+++.+.+++.+. .++++|++||+.||++|||++++++|+.||.+|++.++.+.. ++
T Consensus 93 lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~ 172 (258)
T 2i53_A 93 LAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKL 172 (258)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHH
T ss_pred HHHccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHH
Confidence 99999999999999999887766554331 247899999999999999999999999999999999987642 58
Q ss_pred HHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCCCc---------hhhhhhh--ccCccccC
Q 024567 209 THLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDN---------TAWFEEL--RVDMNVVS 264 (265)
Q Consensus 209 ~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~~~---------~~W~~~~--~~~~~~~~ 264 (265)
.+.|++++++++.++.++.|+|+.||+||||+|+.++|.+. ..||..| |+++++|+
T Consensus 173 ~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~ 239 (258)
T 2i53_A 173 VQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLE 239 (258)
T ss_dssp HHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHH
Confidence 89999999999999999999999999999999999998642 4699998 88877663
No 4
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-40 Score=283.02 Aligned_cols=199 Identities=27% Similarity=0.478 Sum_probs=173.7
Q ss_pred cccc---Ccccc-hhhHHHHhhhhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCc-CCchhhhH
Q 024567 57 FWTK---KTWMW-RNLLTEKRASLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTE-YDPHLVAP 131 (265)
Q Consensus 57 ~~~~---~~w~~-~~~~~~~r~~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~-~~~~lva~ 131 (265)
||+| ++|+| ++++...+ +..+.+ |..+++||.+++.+|+|++.|+++|++|||||+..+++++ ++++++|+
T Consensus 1 ~~~Ss~~~~w~ft~~~l~~~~---~~~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ 76 (235)
T 1zp2_A 1 YWASSQLTQLFLSTDLESLEP---TCLSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVA 76 (235)
T ss_dssp -CCCGGGTGGGSCSSCTTSSC---CCSCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHH
T ss_pred CCccCCCCCCccCHHHHHHCC---cchhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 7888 58999 45553322 223334 9999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhccccchhhHHHHHHHHHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHHHHHH
Q 024567 132 TCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHL 211 (265)
Q Consensus 132 acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~i~~~ 211 (265)
||||||||+||+++++++++.++.+++++ .+.+++++|++||+.||++|||++.+++|+.||.+|++.++.+. ++.+.
T Consensus 77 acL~lA~K~Ee~~~~l~d~~~~~~~~~~~-~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~-~~~~~ 154 (235)
T 1zp2_A 77 TCIYLSCKVEECPVHIRTICNEANDLWSL-KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ-KQLEF 154 (235)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTTCCC-SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH-HHHHH
T ss_pred HHHHHHhccccCcccHHHHHHHHHHHccc-hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH-HHHHH
Confidence 99999999999999999999998876654 24678999999999999999999999999999999999988754 58999
Q ss_pred HHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCCCc---hhhhhhhccCcccc
Q 024567 212 SWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDN---TAWFEELRVDMNVV 263 (265)
Q Consensus 212 A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~~~---~~W~~~~~~~~~~~ 263 (265)
|+.++++++.++.++.|+|+.||+||||+|+.++|.+. ..||+ |++.++|
T Consensus 155 A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~--~~~~~~i 207 (235)
T 1zp2_A 155 AWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIK--STDAFKV 207 (235)
T ss_dssp HHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC--HHHHHHH
T ss_pred HHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh--cCCHHHH
Confidence 99999999999999999999999999999999998753 35665 6666654
No 5
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.9e-38 Score=285.64 Aligned_cols=197 Identities=24% Similarity=0.413 Sum_probs=169.4
Q ss_pred Ccccch-hhHHHH--hhh--hhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHH
Q 024567 61 KTWMWR-NLLTEK--RAS--LLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLY 135 (265)
Q Consensus 61 ~~w~~~-~~~~~~--r~~--~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLf 135 (265)
++|+|. +++... +.+ +.+.+..+|.++++||.+++.+|+|+++|+++|++|||||+..+++.+++++++++||||
T Consensus 10 ~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLf 89 (358)
T 2pk2_A 10 KRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALF 89 (358)
T ss_dssp SSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred CCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 589983 555432 222 233345789999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchhhHHHHHHHHHHhcC---------cchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH
Q 024567 136 LASKAEESTVQARLLVFYIKKIYS---------DEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI 206 (265)
Q Consensus 136 lA~K~ee~~~~i~~iv~~~~~~~~---------d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~ 206 (265)
||||+||+++++++++.+++.+++ ++.+...+++|++||+.||++|+|+|.++||+.||.+|++.++.+.
T Consensus 90 LA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~- 168 (358)
T 2pk2_A 90 LAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK- 168 (358)
T ss_dssp HHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH-
T ss_pred HHHhhccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH-
Confidence 999999999999999988766542 2333344789999999999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHhc-CCccccccCHHHHHHHHHHHHHhhcCCC------chhhhhhhcc
Q 024567 207 NMTHLSWGILNDTY-KMDLILVHPPHLIALACIYIASVYREKD------NTAWFEELRV 258 (265)
Q Consensus 207 ~i~~~A~~i~~d~~-~~~~~l~~~ps~iA~Aai~lA~~~~~~~------~~~W~~~~~~ 258 (265)
++.+.|++++++++ .+++++.|+|+.||+||||+|+.+++.+ ...||+.|+.
T Consensus 169 ~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~ 227 (358)
T 2pk2_A 169 DLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDA 227 (358)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCS
T ss_pred HHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhc
Confidence 58999999999998 4788999999999999999999999853 3579999854
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=8.7e-37 Score=273.55 Aligned_cols=174 Identities=26% Similarity=0.388 Sum_probs=154.5
Q ss_pred HHHhHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcC
Q 024567 82 SLRCRCPTIYRNLAQHVK--VRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYS 159 (265)
Q Consensus 82 ~~R~~~v~~i~~v~~~l~--L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~ 159 (265)
.+|..+++||.++|.+|+ ||+.|+++|++|||||+..+++.+++++++|+||||||||+||+++++++++..+. .
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~---~ 131 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR---E 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS---S
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc---c
Confidence 357888999999999999 99999999999999999999999999999999999999999999999999876431 1
Q ss_pred cc-hhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHc-----CCCC-HHHHHHHHHHHHHhcCCccccccCHHH
Q 024567 160 DE-KYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDA-----GMND-INMTHLSWGILNDTYKMDLILVHPPHL 232 (265)
Q Consensus 160 d~-~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~-----~~~~-~~i~~~A~~i~~d~~~~~~~l~~~ps~ 232 (265)
+. ...++.++|++||+.||++|||++.++||+.||.+|+..+ ++++ ..+.+.|+.++++++.++.++.|+|+.
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~ 211 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQ 211 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHH
Confidence 21 1135679999999999999999999999999999999775 3433 357899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhh-cc
Q 024567 233 IALACIYIASVYREKDNTAWFEEL-RV 258 (265)
Q Consensus 233 iA~Aai~lA~~~~~~~~~~W~~~~-~~ 258 (265)
||+||||+|+..+|.+.+.|+..+ +.
T Consensus 212 IAaAai~lA~~~~~~~~~~w~~~l~~~ 238 (323)
T 1jkw_A 212 IALTAILSSASRAGITMESYLSESLML 238 (323)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 999999999999999888999953 53
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.2e-36 Score=261.69 Aligned_cols=180 Identities=22% Similarity=0.239 Sum_probs=164.1
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~ 153 (265)
.+.++++.||.++++||.+++.+++++++|+++|++|+|||+...++.+.+++++|+||||||||+||. ++++++++.+
T Consensus 30 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i 109 (260)
T 2cch_B 30 KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI 109 (260)
T ss_dssp GCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999 7789999887
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc-ccccCHHH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDL-ILVHPPHL 232 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~-~l~~~ps~ 232 (265)
+.. .+++++|++||+.||++|||+++++||+.||.+|++.++.++..+.+.|++++++++.+.. ++.|+|+.
T Consensus 110 ~~~-------~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~ 182 (260)
T 2cch_B 110 TDD-------TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182 (260)
T ss_dssp TTS-------SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHH
T ss_pred HcC-------CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHH
Confidence 432 5789999999999999999999999999999999999998775688999999999988877 99999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhh----ccCcccc
Q 024567 233 IALACIYIASVYREKDNTAWFEEL----RVDMNVV 263 (265)
Q Consensus 233 iA~Aai~lA~~~~~~~~~~W~~~~----~~~~~~~ 263 (265)
||+|||++|...+|. +.|+..+ |++.++|
T Consensus 183 iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i 215 (260)
T 2cch_B 183 IAGAAFHLALYTVTG--QSWPESLIRKTGYTLESL 215 (260)
T ss_dssp HHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHH
Confidence 999999999999876 6788765 6666554
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.9e-35 Score=258.71 Aligned_cols=177 Identities=21% Similarity=0.233 Sum_probs=162.5
Q ss_pred ccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHHHHH
Q 024567 78 KITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFYIKK 156 (265)
Q Consensus 78 ~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~~~~ 156 (265)
+++++||.++++||.+++.+++++++|+++|++|+|||+..+++.+.+++++|+||||||||+||. ++++++++..+..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 789999999999999999999999999999999999999999999999999999999999999998 5679999877432
Q ss_pred hcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHH
Q 024567 157 IYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALA 236 (265)
Q Consensus 157 ~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~A 236 (265)
.+++++|++||+.||++|||+++++||++||.+|++..+.+. ++.+.|++++++++.++.++.|+|+.||+|
T Consensus 112 -------~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaA 183 (269)
T 2b9r_A 112 -------TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV-EQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183 (269)
T ss_dssp -------SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH-HHHHHHHHHHHHGGGCGGGSSSCTTHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhhhhhcCCHHHHHHH
Confidence 578999999999999999999999999999999999888754 588999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhhhhh----ccCccccC
Q 024567 237 CIYIASVYREKDNTAWFEEL----RVDMNVVS 264 (265)
Q Consensus 237 ai~lA~~~~~~~~~~W~~~~----~~~~~~~~ 264 (265)
||++|...+|.+ .|...+ |++.++|.
T Consensus 184 ai~lA~~~l~~~--~w~~~l~~~tg~~~~~l~ 213 (269)
T 2b9r_A 184 AFSLALKILDNG--EWTPTLQHYLSYTEESLL 213 (269)
T ss_dssp HHHHHHHHHTCC--CSCTTHHHHSCCCSSTTT
T ss_pred HHHHHHHHhCCC--CCCHHHHHHHCCCHHHHH
Confidence 999999999874 687765 77777664
No 9
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-35 Score=257.61 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=161.8
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~ 153 (265)
.+.+++++||.++++||.+++.+++++++|+++|++|+|||+..+++.+.++|++|+||||||||+||. ++++++++..
T Consensus 42 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 42 FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999997 6779998877
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCccccccCH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI---NMTHLSWGILNDTYKMDLILVHPP 230 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~---~i~~~A~~i~~d~~~~~~~l~~~p 230 (265)
+.. .+++++|++||+.||++|+|+++++||+.||.+|++.++.+.. .+.+.|++++++++.++.++.|+|
T Consensus 122 ~~~-------~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~P 194 (257)
T 1g3n_C 122 AAD-------SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPA 194 (257)
T ss_dssp TTT-------CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCH
T ss_pred HCC-------CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCH
Confidence 432 6789999999999999999999999999999999999987643 245779999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC----chhhhhhh----ccCcccc
Q 024567 231 HLIALACIYIASVYREKD----NTAWFEEL----RVDMNVV 263 (265)
Q Consensus 231 s~iA~Aai~lA~~~~~~~----~~~W~~~~----~~~~~~~ 263 (265)
|.||+|||++|...+|.+ .+.|...+ |++.++|
T Consensus 195 S~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l 235 (257)
T 1g3n_C 195 SIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVL 235 (257)
T ss_dssp HHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHH
Confidence 999999999999999864 25688765 6666554
No 10
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=257.91 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=159.5
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchh-hHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV-QARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~-~i~~iv~~ 153 (265)
.+.++++.||.++++||.+|+.+++|+++|+++|++|||||+.++++.+.++|++|+||||||||+||... .+++++..
T Consensus 62 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~ 141 (306)
T 3g33_B 62 VQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY 141 (306)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999744 68888877
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCccccccCH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI---NMTHLSWGILNDTYKMDLILVHPP 230 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~---~i~~~A~~i~~d~~~~~~~l~~~p 230 (265)
+.+ .+++++|++||+.||++|+|+++++||+.||.+|++.++.+.. .+.+.|++++++++.++.++.|+|
T Consensus 142 ~~~-------~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~P 214 (306)
T 3g33_B 142 TDH-------AVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPP 214 (306)
T ss_dssp TTT-------SSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCH
T ss_pred hcc-------CccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCH
Confidence 432 6789999999999999999999999999999999999877532 255789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCc---hhhhhhh----ccCcccc
Q 024567 231 HLIALACIYIASVYREKDN---TAWFEEL----RVDMNVV 263 (265)
Q Consensus 231 s~iA~Aai~lA~~~~~~~~---~~W~~~~----~~~~~~~ 263 (265)
|.||+|||++|...++... ..|+..+ |++.++|
T Consensus 215 S~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l 254 (306)
T 3g33_B 215 SMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCL 254 (306)
T ss_dssp HHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHH
Confidence 9999999999999998542 4566554 7776654
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.3e-34 Score=252.19 Aligned_cols=182 Identities=18% Similarity=0.300 Sum_probs=159.5
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~ 153 (265)
.+.++++.||.++++||.+++.+++++++|+++|++|+|||+++.++.+.+++++|+||||||||+||. |+++++++..
T Consensus 48 ~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~ 127 (271)
T 2w96_A 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY 127 (271)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999 7889998876
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhcCCccccccCH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDIN---MTHLSWGILNDTYKMDLILVHPP 230 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~---i~~~A~~i~~d~~~~~~~l~~~p 230 (265)
+. ..+++++|++||+.||++|||+++++||+.||.+|++.++.++.. +.+.|++++++++.+..++.|+|
T Consensus 128 ~~-------~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~P 200 (271)
T 2w96_A 128 TD-------NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPP 200 (271)
T ss_dssp TT-------TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCH
T ss_pred hc-------CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCH
Confidence 43 267899999999999999999999999999999999999886431 24578999999888888899999
Q ss_pred HHHHHHHHHHHHhhcCC---Cchhhhhh--------hccCcccc
Q 024567 231 HLIALACIYIASVYREK---DNTAWFEE--------LRVDMNVV 263 (265)
Q Consensus 231 s~iA~Aai~lA~~~~~~---~~~~W~~~--------~~~~~~~~ 263 (265)
|.||+|||++|...+|. +.+.|+.. .|++.++|
T Consensus 201 S~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l 244 (271)
T 2w96_A 201 SMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCL 244 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHH
Confidence 99999999999998864 23456542 46666554
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.6e-34 Score=249.60 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=149.8
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~ 153 (265)
.+.++++.||.++++||.+++.+++++++|+++|++|+|||+.++++.+.++|++|+||||||||+||. ++++++++..
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999996 6678888766
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhcCCccccccCH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDIN---MTHLSWGILNDTYKMDLILVHPP 230 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~---i~~~A~~i~~d~~~~~~~l~~~p 230 (265)
+.. .+++++|++||+.||++|+|+++++||+.||.+|++.++.++.. +.+.|+++++.++.++.++.|+|
T Consensus 123 ~~~-------~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~P 195 (254)
T 2f2c_A 123 SCD-------CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSP 195 (254)
T ss_dssp C----------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCH
T ss_pred hCC-------CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCH
Confidence 432 67899999999999999999999999999999999999886532 35679999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 024567 231 HLIALACIYIASVYREK 247 (265)
Q Consensus 231 s~iA~Aai~lA~~~~~~ 247 (265)
|.||+|||++|....+.
T Consensus 196 S~iAaAai~la~~~~~~ 212 (254)
T 2f2c_A 196 GLICAGGLLTTIETDNT 212 (254)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999633
No 13
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.8e-33 Score=239.97 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=144.6
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVFY 153 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~~ 153 (265)
.+.++++.||.++++||.+|+.++++.++|+++|++|+|||++++++.+.++|++|+||||||+|+||. +.++++++..
T Consensus 40 ~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~ 119 (252)
T 1f5q_B 40 VDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYL 119 (252)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999999998 4468888877
Q ss_pred HHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCccccccCH
Q 024567 154 IKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI---NMTHLSWGILNDTYKMDLILVHPP 230 (265)
Q Consensus 154 ~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~---~i~~~A~~i~~d~~~~~~~l~~~p 230 (265)
+.+ .++.++|++||+.||++|+|+++++||+.||.+|++.++.+.. .+.+.|.++++.++.++.++.|+|
T Consensus 120 ~~~-------~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~P 192 (252)
T 1f5q_B 120 CGG-------ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRP 192 (252)
T ss_dssp HCT-------TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCH
T ss_pred hCC-------CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCH
Confidence 543 6889999999999999999999999999999999999887642 256689999999998888999999
Q ss_pred HHHHHHHHHHHH
Q 024567 231 HLIALACIYIAS 242 (265)
Q Consensus 231 s~iA~Aai~lA~ 242 (265)
|.||+||+.++.
T Consensus 193 S~iAaaa~~~~l 204 (252)
T 1f5q_B 193 VLITLACMHLTM 204 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999965554
No 14
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=4.6e-32 Score=228.45 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=159.0
Q ss_pred HhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchh
Q 024567 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (265)
Q Consensus 84 R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~ 163 (265)
.....++|.++|.+|+||+.|.++|++||+||+..+++++.+++.+++||||+|||+||.|+++++|+.++
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~--------- 75 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVS--------- 75 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTS---------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHH---------
Confidence 56789999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred cccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHh
Q 024567 164 RYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASV 243 (265)
Q Consensus 164 ~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~ 243 (265)
.++.++|.++|+.||+.|||++.+++|+.||.+|++.+++++ ++.+.|+.+++++..++++++++|+.||+||||+|++
T Consensus 76 ~~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~ 154 (207)
T 1c9b_A 76 RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 154 (207)
T ss_dssp SSCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999975 5899999999999999999999999999999999999
Q ss_pred hcCCC--chhhhhhhccCccccC
Q 024567 244 YREKD--NTAWFEELRVDMNVVS 264 (265)
Q Consensus 244 ~~~~~--~~~W~~~~~~~~~~~~ 264 (265)
+.|.+ .+.|....+++..+|+
T Consensus 155 ~~~~~~~~~~i~~~~~v~~~tI~ 177 (207)
T 1c9b_A 155 ASAEKRTQKEIGDIAGVADVTIR 177 (207)
T ss_dssp TSSSCCCHHHHHHHHTCCHHHHH
T ss_pred HHCCCCCHHHHHHHhCCCHHHHH
Confidence 99875 4688899999887663
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.98 E-value=3e-32 Score=240.05 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=152.9
Q ss_pred hhhccCHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhc-cCCCcCCchhhhHHHHHHhhccccc-hhhHHHHHH
Q 024567 75 SLLKITSSLRCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTR-KSMTEYDPHLVAPTCLYLASKAEES-TVQARLLVF 152 (265)
Q Consensus 75 ~~~~~~~~~R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~-~~~~~~~~~lva~acLflA~K~ee~-~~~i~~iv~ 152 (265)
.+.+++++||.++++||.+++.+++++++|+++|++|+|||+.. +++++.+++++|+||||||||+||. ++++++++.
T Consensus 41 ~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~ 120 (283)
T 1w98_B 41 QHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAY 120 (283)
T ss_dssp GCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 35678999999999999999999999999999999999999997 6899999999999999999999998 667999887
Q ss_pred HHHHhcCcchhcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhcCC
Q 024567 153 YIKKIYSDEKYRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQDAGMNDI----------NMTHLSWGILNDTYKM 222 (265)
Q Consensus 153 ~~~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~~~~~~~----------~i~~~A~~i~~d~~~~ 222 (265)
++.+ .++.++|++||+.||++|||+++++||+.||.+|++.++.++. .....+.++++.++.+
T Consensus 121 i~~~-------~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d 193 (283)
T 1w98_B 121 VTDG-------ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLD 193 (283)
T ss_dssp TTTT-------SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHS
T ss_pred HHcC-------CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 6432 5789999999999999999999999999999999998765421 1233466788999888
Q ss_pred ccccccCHHHHHHHHHHHHHhhcCCCchhhhhhhccCcccc
Q 024567 223 DLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVV 263 (265)
Q Consensus 223 ~~~l~~~ps~iA~Aai~lA~~~~~~~~~~W~~~~~~~~~~~ 263 (265)
..++.|+||.||+||||+|.. .+.|....|++.++|
T Consensus 194 ~~~l~~~PS~iAaAai~la~~-----~~~l~~~tg~~~~~i 229 (283)
T 1w98_B 194 VDCLEFPYGILAASALYHFSS-----SELMQKVSGYQWCDI 229 (283)
T ss_dssp GGGGGSCHHHHHHHHHHHTSC-----HHHHHHHSCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHC-----hHHHHHHhCCCHHHH
Confidence 889999999999999999864 356666667666554
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.95 E-value=3.4e-27 Score=197.58 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=155.7
Q ss_pred HhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchh
Q 024567 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (265)
Q Consensus 84 R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~ 163 (265)
.....++|.++|..|+||+.+..+|..||+||+..+.+++.+...+++||||+|||.|+.|++++||..++
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~--------- 79 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIA--------- 79 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHH---------
Confidence 46889999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred cccHHHHHHHHHHHHHHcCcceee--cCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHH
Q 024567 164 RYEVKDILEMEMKILEALNYYLVV--FHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIA 241 (265)
Q Consensus 164 ~~~~~~i~~~E~~IL~~L~F~l~~--~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA 241 (265)
..+..+|.++|+.|++.|||++.+ .+|+.||.+|++.+++++ ++.+.|+.+++++..+.++.+++|+.||+||||+|
T Consensus 80 ~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A 158 (200)
T 1ais_B 80 RVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA 158 (200)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 356789999999999999999999 999999999999999976 48999999999999999999999999999999999
Q ss_pred HhhcCCC--chhhhhhhccCcccc
Q 024567 242 SVYREKD--NTAWFEELRVDMNVV 263 (265)
Q Consensus 242 ~~~~~~~--~~~W~~~~~~~~~~~ 263 (265)
+++.|.. .+.+....+++..+|
T Consensus 159 ~~~~~~~~t~~ei~~~~~vs~~ti 182 (200)
T 1ais_B 159 SLLEGEKRTQREVAEVARVTEVTV 182 (200)
T ss_dssp HHHTTCCCCHHHHHHHHTCCHHHH
T ss_pred HHHhCCCCCHHHHHHHhCCCHHHH
Confidence 9999864 356777777766544
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-25 Score=201.76 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=84.0
Q ss_pred HhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchh
Q 024567 84 RCRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKY 163 (265)
Q Consensus 84 R~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~ 163 (265)
...+...|.+++..|+||+.+..+|..||+|++..+.+++.+...+++||||+|||.|+.|+++++|+.++
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~--------- 196 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI--------- 196 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSS---------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHH---------
Confidence 35778999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred cccHHHHHHHHHHHHHHcC------------cceeecCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHH
Q 024567 164 RYEVKDILEMEMKILEALN------------YYLVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPH 231 (265)
Q Consensus 164 ~~~~~~i~~~E~~IL~~L~------------F~l~~~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps 231 (265)
.++.++|.++++.|++.|+ |++.+.+|+.||.+|++.+++++ ++.+.|+.+++++..+.++.+++|+
T Consensus 197 ~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-~v~~~A~~i~~~~~~~~l~~Gr~P~ 275 (345)
T 3k7a_M 197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp SCCSHHHHHHHHHHHHHHTCC-----------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHhchhcCCCHH
Confidence 3567899999999999999 99999999999999999999976 4899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC--chhhhhhhccCccccC
Q 024567 232 LIALACIYIASVYREKD--NTAWFEELRVDMNVVS 264 (265)
Q Consensus 232 ~iA~Aai~lA~~~~~~~--~~~W~~~~~~~~~~~~ 264 (265)
.||+||||+|+.++|.. .+.|....+++...|+
T Consensus 276 ~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr 310 (345)
T 3k7a_M 276 TIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIK 310 (345)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Confidence 99999999999999865 5778888888877664
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.79 E-value=9.7e-20 Score=164.03 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhc
Q 024567 85 CRCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYR 164 (265)
Q Consensus 85 ~~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~ 164 (265)
......|.+++..|+||..+..+|..+|++++..+.+++.....+++||||+|||.++.|+++++|..++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~--------- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--------- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC---------
Confidence 57789999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ccHHHHHHHHHHHHHHcCcc------------eeecCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHH
Q 024567 165 YEVKDILEMEMKILEALNYY------------LVVFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHL 232 (265)
Q Consensus 165 ~~~~~i~~~E~~IL~~L~F~------------l~~~~P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~ 232 (265)
.+.++|.+..+.|++.|+.. +...+|..|+.+|+..++++. ++.+.|+.+++.+....+..+.+|..
T Consensus 198 v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp CCTTHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhcccccCCChHH
Confidence 45688999999999999974 667799999999999999976 48899999999999888889999999
Q ss_pred HHHHHHHHHHhhcCC
Q 024567 233 IALACIYIASVYREK 247 (265)
Q Consensus 233 iA~Aai~lA~~~~~~ 247 (265)
||+||||+|+.+.|.
T Consensus 277 IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 277 IAVVSIYLNILLFQI 291 (345)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999873
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.23 E-value=4.9e-06 Score=68.66 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhcccH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~~~ 167 (265)
.++|.+++..|+++.++..+|..++++.....-..++.+..+++||+|+||+..+.+++.++|..++ ..+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~---------~vs~ 179 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVA---------RVTE 179 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH---------TCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHh---------CCCH
Confidence 3788899999999999999999999999988888899999999999999999999999999988874 3466
Q ss_pred HHHHHHHHHHHHHcCcce
Q 024567 168 KDILEMEMKILEALNYYL 185 (265)
Q Consensus 168 ~~i~~~E~~IL~~L~F~l 185 (265)
.+|.+.-+.+.+.||.++
T Consensus 180 ~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 180 VTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 788888899999998665
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.07 E-value=3e-05 Score=67.27 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcc---CCCcCCchhhhHHHHHHhhcccc-chhhHHHHHHHHHHhcCcch
Q 024567 87 CPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRK---SMTEYDPHLVAPTCLYLASKAEE-STVQARLLVFYIKKIYSDEK 162 (265)
Q Consensus 87 ~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~---~~~~~~~~lva~acLflA~K~ee-~~~~i~~iv~~~~~~~~d~~ 162 (265)
+-+|+.++.+.-+++..++-.|.+|++|+.... .+...+..-+.++||.+|+|+-+ ....-+....+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--------- 147 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--------- 147 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc---------
Confidence 568999999999999999999999999998743 24567888999999999999554 33333443333
Q ss_pred hcccHHHHHHHHHHHHHHcCcceeecCcHHHHHHHHHH
Q 024567 163 YRYEVKDILEMEMKILEALNYYLVVFHPYRSLVQFLQD 200 (265)
Q Consensus 163 ~~~~~~~i~~~E~~IL~~L~F~l~~~~P~~~l~~~~~~ 200 (265)
...+.+++-.||+..|..|+|++.+. +..|...++..
T Consensus 148 gGisl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 148 GGVRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HTSCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred cCcCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 14568999999999999999999876 45666555554
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.80 E-value=8.2e-05 Score=61.54 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhcccH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~~~ 167 (265)
.++|.+.++.++++.++..+|..+++.-....-..++.+..+|+||+|+||+..+.+++.+++..++ ..+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~---------~v~~ 173 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA---------GVAD 173 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH---------TCCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh---------CCCH
Confidence 5788899999999999999999999998887777899999999999999999999998888887764 3456
Q ss_pred HHHHHHHHHHHHHcCcc
Q 024567 168 KDILEMEMKILEALNYY 184 (265)
Q Consensus 168 ~~i~~~E~~IL~~L~F~ 184 (265)
.+|.+.-+.|++.++..
T Consensus 174 ~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 174 VTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHHHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777766543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.84 E-value=0.0014 Score=58.45 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIK 155 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~ 155 (265)
.++|...|.+|+|+.++...|..+.++.....-..+..+.-+|+||||+||...+..++.++|..++.
T Consensus 236 ~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 36788899999999999999999999988766667889999999999999999988888888877654
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0016 Score=58.22 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIK 155 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~ 155 (265)
.++|...+..|+++.++..+|..+.++-....-...+.+..+|+||||+||+..+..++.++|..++.
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~ 303 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Confidence 46777889999999999999999999988766677889999999999999999888777777776643
No 24
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=94.33 E-value=1.5 Score=35.66 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcc---CCCcCCchhhhHHHHHHhhccccchhhHHHHHHH
Q 024567 86 RCPTIYRNLAQHVKVRQRVVATAVTYMRRCYTRK---SMTEYDPHLVAPTCLYLASKAEESTVQARLLVFY 153 (265)
Q Consensus 86 ~~v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~---~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~ 153 (265)
.+.+-|..+.++-++|..++.-|+.+-+.|.-.. ..+-...+.+++||+.+|+---..|.|+.++-..
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~l 84 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCL 84 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 3456668889999999999999999999997532 3344578999999999999887889998775543
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.93 E-value=0.09 Score=43.88 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhcccH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~~~ 167 (265)
.++|...++.++++.++...|..++..-+.....-.+.+..+|+||+++|++..+...+. +.. . + ..++.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~-~~~----~-~----~~~~~ 204 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK-LLD----L-I----KSTDA 204 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH-HHH----H-C----CHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC-Ccc----h-h----hcCCH
Confidence 367778888899999999999999999887777788999999999999999987654331 100 0 0 03456
Q ss_pred HHHHHHHHHHHHHc
Q 024567 168 KDILEMEMKILEAL 181 (265)
Q Consensus 168 ~~i~~~E~~IL~~L 181 (265)
++|.++-..|++..
T Consensus 205 ~~i~~~~~~i~~ly 218 (235)
T 1zp2_A 205 FKVILCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777654
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.55 E-value=0.13 Score=44.24 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhcccH
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRYEV 167 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~~~ 167 (265)
.+++...++.++.+..+...|..+++.-+....+-.+.+..||+||+++|++..+...+ ..... ..++.
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~------~W~~~-----~~~~~ 226 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDAR------QWFAE-----LSVDM 226 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCH------HHHHT-----SCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChh------hHHHH-----HCCCH
Confidence 46788888899999899999999998877666667789999999999999997664321 11111 24566
Q ss_pred HHHHHHHHHHHHHc
Q 024567 168 KDILEMEMKILEAL 181 (265)
Q Consensus 168 ~~i~~~E~~IL~~L 181 (265)
++|.++-..|++..
T Consensus 227 ~~l~~~~~~il~ly 240 (285)
T 3rgf_B 227 EKILEIIRVILKLY 240 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777643
No 27
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=92.27 E-value=0.28 Score=41.52 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhccC-CCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcchhcc
Q 024567 88 PTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTRKS-MTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEKYRY 165 (265)
Q Consensus 88 v~~i~~v~~~l~L~~-~t~~tA~~~~~Rf~~~~~-~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~~~~ 165 (265)
.+|+...++.++++. .+...|..+.+.-+.... +-.+.+..+|+||+++|++.-+.+...+.+...+ .+
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~---------g~ 210 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKT---------GY 210 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHH---------CC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHh---------Cc
Confidence 578888899999876 677788877776554445 6778999999999999998655443333443332 35
Q ss_pred cHHHHHHHHHHHHHH
Q 024567 166 EVKDILEMEMKILEA 180 (265)
Q Consensus 166 ~~~~i~~~E~~IL~~ 180 (265)
+.++|..+-..|.+.
T Consensus 211 ~~~~i~~~~~~l~~~ 225 (260)
T 2cch_B 211 TLESLKPCLMDLHQT 225 (260)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 567777766666554
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.50 E-value=0.25 Score=41.57 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCh----HHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHHhcCcch-
Q 024567 88 PTIYRNLAQHVKVRQ----RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKKIYSDEK- 162 (265)
Q Consensus 88 v~~i~~v~~~l~L~~----~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~~~~d~~- 162 (265)
.+++...++.++.+. .+...|..+++.-+....+-.+.+..+|+||+++|++..+...+-.+.. ....-|-...
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~-~~~~~W~~~~~ 230 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSK-PMYRRWWEQFV 230 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSS-CCSSCGGGGTS
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccC-CCcccHHHHhc
Confidence 478888899999987 5778888888888877777789999999999999999765433210000 0000000000
Q ss_pred hcccHHHHHHHHHHHHHHcC
Q 024567 163 YRYEVKDILEMEMKILEALN 182 (265)
Q Consensus 163 ~~~~~~~i~~~E~~IL~~L~ 182 (265)
..++.++|.++-..|++...
T Consensus 231 ~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 231 QDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSCCHHHHHHHHHHHHTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHh
Confidence 13567788888777776543
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=91.45 E-value=0.14 Score=43.67 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccch
Q 024567 88 PTIYRNLAQHVKVRQRVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST 144 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~ 144 (265)
.+|+...++.++++.++...|..+++.-+....+-.+.+..+|+||+++|++.-+..
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 478888889999999988899999888887777888999999999999999976544
No 30
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=91.45 E-value=0.47 Score=39.95 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCC
Q 024567 191 YRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREK 247 (265)
Q Consensus 191 ~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~ 247 (265)
.++|.+....++++. .+..+|..++.-.+.....-.+++..||+||+|+|++..+.
T Consensus 35 ~~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQ-LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 467888888899975 48889988888887766667899999999999999999886
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=91.22 E-value=0.74 Score=38.68 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCChHHH----HHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhcccc-chhh----HHHHHHHHHHhc
Q 024567 88 PTIYRNLAQHVKVRQRVV----ATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEE-STVQ----ARLLVFYIKKIY 158 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~----~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee-~~~~----i~~iv~~~~~~~ 158 (265)
.+|+....+.++++.++. ..|..+++.-+....+-.+.+..+|+||+++|.+... .+.+ .+.+...+
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t---- 228 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL---- 228 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH----
Confidence 467778888888887653 3466666655555566788999999999999999852 2222 33433332
Q ss_pred CcchhcccHHHHHHHHHHHHHH
Q 024567 159 SDEKYRYEVKDILEMEMKILEA 180 (265)
Q Consensus 159 ~d~~~~~~~~~i~~~E~~IL~~ 180 (265)
.++.++|..+-..|.+.
T Consensus 229 -----g~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 229 -----NFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp -----TCCHHHHHHHHHHHHHH
T ss_pred -----CcCHHHHHHHHHHHHHH
Confidence 35567777665555543
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=91.21 E-value=0.96 Score=38.06 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCChHH----HHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccch------hhHHHHHHHHHHh
Q 024567 88 PTIYRNLAQHVKVRQRV----VATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEEST------VQARLLVFYIKKI 157 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t----~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~------~~i~~iv~~~~~~ 157 (265)
.+|+....+.++++.++ ...|..+++.-+....+-.+.+..+|+||+++|.+.-+.+ .-.+.+...+
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--- 228 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--- 228 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH---
Confidence 57888888888887664 3456677776666666778899999999999999976632 1133333321
Q ss_pred cCcchhcccHHHHHHHHHHHHHH
Q 024567 158 YSDEKYRYEVKDILEMEMKILEA 180 (265)
Q Consensus 158 ~~d~~~~~~~~~i~~~E~~IL~~ 180 (265)
.++.++|..+=..|.+.
T Consensus 229 ------~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 229 ------GCDVSVLQAAVEQILTS 245 (257)
T ss_dssp ------TCCHHHHHHHHHHHHHH
T ss_pred ------CcCHHHHHHHHHHHHHH
Confidence 35566776665555443
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=90.93 E-value=0.5 Score=41.41 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=46.7
Q ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCCC
Q 024567 192 RSLVQFLQDAG--MNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKD 248 (265)
Q Consensus 192 ~~l~~~~~~~~--~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~~ 248 (265)
.+|..++..++ ++. .+..+|..++.-.+.....-.++|..||+||+|+|+++.+..
T Consensus 62 ~~I~ev~~~l~~~Lp~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~ 119 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPR-SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN 119 (323)
T ss_dssp HHHHHHHHHCTTTCCH-HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC
Confidence 45677788888 765 478889888888887777778999999999999999998864
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=89.62 E-value=0.57 Score=41.70 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCC
Q 024567 191 YRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREK 247 (265)
Q Consensus 191 ~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~ 247 (265)
.++|.++...++++. .+..+|..++.-.+.....-.+++..||+||+|+|+++.+.
T Consensus 42 v~wI~ev~~~l~L~~-~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQ-LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHTTTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 567777778888875 48889988888888766667899999999999999999886
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=86.57 E-value=2.2 Score=36.10 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCChHHH----HHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccc--h------h-hHHHHHHHH
Q 024567 88 PTIYRNLAQHVKVRQRVV----ATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEES--T------V-QARLLVFYI 154 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~t~----~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~--~------~-~i~~iv~~~ 154 (265)
.+|+......++++.++. ..|..++..-.....+-.+.+..+|+||+++|++.-+. + . ..+.+..++
T Consensus 158 ~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~ 237 (271)
T 2w96_A 158 HDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237 (271)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHH
Confidence 588888899999988764 34555555444333455788999999999999975432 1 0 123333321
Q ss_pred HHhcCcchhcccHHHHHHHHHHHHHHcCcce
Q 024567 155 KKIYSDEKYRYEVKDILEMEMKILEALNYYL 185 (265)
Q Consensus 155 ~~~~~d~~~~~~~~~i~~~E~~IL~~L~F~l 185 (265)
.++..+|..+-..|++.++=++
T Consensus 238 ---------~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 238 ---------KCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp ---------TSCHHHHHHHHHHHHHHHTTTT
T ss_pred ---------CcCHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777665444
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=85.84 E-value=3.4 Score=35.74 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCChH----HHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhccccchh-hHHHHHHHHHHhcCcch
Q 024567 88 PTIYRNLAQHVKVRQR----VVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASKAEESTV-QARLLVFYIKKIYSDEK 162 (265)
Q Consensus 88 v~~i~~v~~~l~L~~~----t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K~ee~~~-~i~~iv~~~~~~~~d~~ 162 (265)
.+|+......++++.. +...|..++..-+....+-.+.+..+|+||+++|.+.-+... ..+........+
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~----- 246 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI----- 246 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-----
Confidence 3677777788877654 334566667666666677789999999999999999655321 111111111111
Q ss_pred hcccHHHHHHHHHHHHHHcCcce
Q 024567 163 YRYEVKDILEMEMKILEALNYYL 185 (265)
Q Consensus 163 ~~~~~~~i~~~E~~IL~~L~F~l 185 (265)
..++.++|..+-..|++.+.=.+
T Consensus 247 tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 247 TGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HCCCHHHHHHHHHHHHHHHHHHH
Confidence 14566777777777766554433
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=84.09 E-value=5 Score=28.52 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=42.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhccC-----CCcCCchhhhHHHHHHhhccccchhhHHHHHH
Q 024567 91 YRNLAQHVKVRQRVVATAVTYMRRCYTRKS-----MTEYDPHLVAPTCLYLASKAEESTVQARLLVF 152 (265)
Q Consensus 91 i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~-----~~~~~~~lva~acLflA~K~ee~~~~i~~iv~ 152 (265)
|.++|..|++.. +...|-.++++|-..-+ --..+.-..++||+|.|||.......-..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 457888999987 77778899999974321 01223445678999999998877665434444
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=75.74 E-value=5 Score=34.79 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhccC---CCcCCchhhhHHHHHHhhc-cccchhhHHHHHHHH
Q 024567 91 YRNLAQHVKVRQRVVATAVTYMRRCYTRKS---MTEYDPHLVAPTCLYLASK-AEESTVQARLLVFYI 154 (265)
Q Consensus 91 i~~v~~~l~L~~~t~~tA~~~~~Rf~~~~~---~~~~~~~lva~acLflA~K-~ee~~~~i~~iv~~~ 154 (265)
..++|+.|+++..|...|...|++.-.... -...+-+....||||+||. +++...++..|++.+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 357899999999999999999999765311 2223455666778999997 555566788887765
No 39
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=73.20 E-value=5.4 Score=35.24 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhc--cCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHH
Q 024567 88 PTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTR--KSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIK 155 (265)
Q Consensus 88 v~~i~~v~~~l~L~~-~t~~tA~~~~~Rf~~~--~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~ 155 (265)
..=|.++|++|+++. +......+.|+..+.. .-+...++.-+.+.|+|.-||+.....+.++|+....
T Consensus 219 ~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 219 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 455789999998776 4666677777777753 3357778888999999999999998889999998643
No 40
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=72.58 E-value=20 Score=30.36 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCh-----------HHHHHHHHHHHHHHhccCCCcCCchhhhHHHHHHhhc
Q 024567 88 PTIYRNLAQHVKVRQ-----------RVVATAVTYMRRCYTRKSMTEYDPHLVAPTCLYLASK 139 (265)
Q Consensus 88 v~~i~~v~~~l~L~~-----------~t~~tA~~~~~Rf~~~~~~~~~~~~lva~acLflA~K 139 (265)
.+|+....+.++++. .++..+..+++.-+....+-.+.+..+|+||+++|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 466766666665432 2333455556655555566788999999999999985
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=70.30 E-value=7.8 Score=34.98 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhc--cCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHH
Q 024567 87 CPTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTR--KSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIK 155 (265)
Q Consensus 87 ~v~~i~~v~~~l~L~~-~t~~tA~~~~~Rf~~~--~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~ 155 (265)
+..=|.++|++|+++. +....--+.|+..+.. .-+...++.-+.+.|+|.-||+.....+.++|+....
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 4556788999999876 4555555667666643 3356778888999999999999988889999998643
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=63.13 E-value=16 Score=34.94 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhc--cCCCcCCchhhhHHHHHHhhccccchhhHHHHHHHHHH
Q 024567 87 CPTIYRNLAQHVKVRQ-RVVATAVTYMRRCYTR--KSMTEYDPHLVAPTCLYLASKAEESTVQARLLVFYIKK 156 (265)
Q Consensus 87 ~v~~i~~v~~~l~L~~-~t~~tA~~~~~Rf~~~--~~~~~~~~~lva~acLflA~K~ee~~~~i~~iv~~~~~ 156 (265)
+..=|.++|++|+++. +.....-++|+..+.. .-+...++.-+.+.|+|.-||+.....+.++|+....+
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 4567889999998775 4556777778877753 34677788889999999999999988899999987543
No 43
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=56.01 E-value=20 Score=29.89 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhhcCCC
Q 024567 192 RSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKD 248 (265)
Q Consensus 192 ~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~~~~~l~~~ps~iA~Aai~lA~~~~~~~ 248 (265)
+++......+++.. +...+|..++.-.+...-.-.....-+|++|+++|+++.+..
T Consensus 54 dWl~ev~~~~~l~~-eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~ 109 (252)
T 1f5q_B 54 TWMFCVCKDLRQDN-NVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM 109 (252)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCh-HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666667777765 367788887776654333345568899999999999998753
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=52.21 E-value=26 Score=33.52 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhc-c----CCCcCCchhhhHHHHHH-hhccccchhhHHHHHHHH
Q 024567 91 YRNLAQHVKVRQRVVATAVTYMRRCYTR-K----SMTEYDPHLVAPTCLYL-ASKAEESTVQARLLVFYI 154 (265)
Q Consensus 91 i~~v~~~l~L~~~t~~tA~~~~~Rf~~~-~----~~~~~~~~lva~acLfl-A~K~ee~~~~i~~iv~~~ 154 (265)
..++|+.|++...|...|...|..-... . ++.+. ...-.||+|. ||.+|+...++..|+..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~--~~~W~aC~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKK--KELWGICIFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CC--HHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccc--hHHhhhhhheeeeeccCCeeeHHHHHHHh
Confidence 4578999999999999999999998842 1 22333 3334444454 555788888888888765
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=39.28 E-value=70 Score=28.06 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCcceeec--------Cc----HHH---------------HHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024567 167 VKDILEMEMKILEALNYYLVVF--------HP----YRS---------------LVQFLQDAGMNDINMTHLSWGILNDT 219 (265)
Q Consensus 167 ~~~i~~~E~~IL~~L~F~l~~~--------~P----~~~---------------l~~~~~~~~~~~~~i~~~A~~i~~d~ 219 (265)
.+.+-.+|..||+.+-|.-+-+ .+ ... |..+|+.++.++.++.+.+|.+.+.+
T Consensus 168 vkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~ 247 (347)
T 2r7g_A 168 IKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHT 247 (347)
T ss_dssp HHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 5778899999999999965532 11 111 23334555555545677888888887
Q ss_pred cC--CccccccCHHHHHHHHHHHHHhhcCCC
Q 024567 220 YK--MDLILVHPPHLIALACIYIASVYREKD 248 (265)
Q Consensus 220 ~~--~~~~l~~~ps~iA~Aai~lA~~~~~~~ 248 (265)
+. +.++....-..|-++|||..++..+.+
T Consensus 248 l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 248 LQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 74 567777889999999999999998754
No 46
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=32.77 E-value=35 Score=18.04 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 024567 167 VKDILEMEMKILEALNYY 184 (265)
Q Consensus 167 ~~~i~~~E~~IL~~L~F~ 184 (265)
-++|.++|..|-++|.||
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 377899999999999987
No 47
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=31.31 E-value=1e+02 Score=27.65 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhc--CCccccccCHHHHHHHHHHHHHhhcCCC
Q 024567 196 QFLQDAGMNDINMTHLSWGILNDTY--KMDLILVHPPHLIALACIYIASVYREKD 248 (265)
Q Consensus 196 ~~~~~~~~~~~~i~~~A~~i~~d~~--~~~~~l~~~ps~iA~Aai~lA~~~~~~~ 248 (265)
.+|..++.++.++.+..|.+.+-++ .+.++....-..|-++|||.-+++.+.+
T Consensus 288 ~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~ 342 (411)
T 4ell_A 288 TLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 342 (411)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCC
Confidence 3345566655456778888887776 3567777789999999999999988754
No 48
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.40 E-value=3.7e+02 Score=23.74 Aligned_cols=22 Identities=5% Similarity=-0.068 Sum_probs=17.6
Q ss_pred hhccCHHHHhHHHHHHHHHHHH
Q 024567 76 LLKITSSLRCRCPTIYRNLAQH 97 (265)
Q Consensus 76 ~~~~~~~~R~~~v~~i~~v~~~ 97 (265)
..+-+.+.|+.+++||.++|..
T Consensus 72 ~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 72 QADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH
Confidence 3344678899999999999974
No 49
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=20.95 E-value=2.4e+02 Score=24.01 Aligned_cols=73 Identities=10% Similarity=0.026 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--Cccc-cccCHHHHHHHHHHHHHhhcCC---CchhhhhhhccCcccc
Q 024567 190 PYRSLVQFLQDAGMNDINMTHLSWGILNDTYK--MDLI-LVHPPHLIALACIYIASVYREK---DNTAWFEELRVDMNVV 263 (265)
Q Consensus 190 P~~~l~~~~~~~~~~~~~i~~~A~~i~~d~~~--~~~~-l~~~ps~iA~Aai~lA~~~~~~---~~~~W~~~~~~~~~~~ 263 (265)
-++|+.++.+..+++. .+.-.|...++-... ..+. -..+.+-+-++|+.+|.+.++- ..+.|-..-|++..++
T Consensus 77 I~~Yl~RI~k~t~ls~-~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEH-CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHHTTTCCH-HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 3688999888777764 344344333333222 1222 2467899999999999999863 3577888888877654
Done!