BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024568
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y56|A Chain A, Crystal Structure Of L-Proline Dehydrogenase From
           P.Horikoshii
          Length = 493

 Score = 31.2 bits (69), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 128 LESMPKWPERLHVAPERISDIHGGSASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMD 187
           LE M  W     VAP R   + G  A     +  +W +   H   +    G +K+  V+D
Sbjct: 239 LEVMNVW----EVAPGRKVAVTGSKADEVIQELERWGIDYVHIPNVKRVEGNEKVERVID 294

Query: 188 MNT 190
           MN 
Sbjct: 295 MNN 297


>pdb|2ZHP|A Chain A, Crystal Structure Of Bleomycin-Binding Protein From
           Streptoalloteichus Hindustanus Complexed With Bleomycin
           Derivative
 pdb|2ZHP|B Chain B, Crystal Structure Of Bleomycin-Binding Protein From
           Streptoalloteichus Hindustanus Complexed With Bleomycin
           Derivative
          Length = 124

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 195 FAAAVIDDPLWVMNVVSSYAA--NTLAVVYDRGLIGTYHDWCEAFSTYPR 242
           FA  V DD    ++ V       NTLA V+ RGL   Y +W E  ST  R
Sbjct: 38  FAGVVRDDVTLFISAVQDQVVPDNTLAWVWVRGLDELYAEWSEVVSTNFR 87


>pdb|1BYL|A Chain A, Bleomycin Resistance Protein From Streptoalloteichus
           Hindustanus
          Length = 125

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 195 FAAAVIDDPLWVMNVVSSYAA--NTLAVVYDRGLIGTYHDWCEAFSTYPR 242
           FA  V DD    ++ V       NTLA V+ RGL   Y +W E  ST  R
Sbjct: 39  FAGVVRDDVTLFISAVQDQVVPDNTLAWVWVRGLDELYAEWSEVVSTNFR 88


>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
           Pyrococcus Furiosus Pfu-867808-001
          Length = 214

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 19/140 (13%)

Query: 102 LEPDSAWYTPLRPCVV---VPRPNLKKSVLESMPKWPERLHVAPERIS---------DIH 149
           L+  S +  PL+  ++   VP   +K  +       PE + + P +IS          ++
Sbjct: 52  LKTISTYLKPLKGEIIYNGVPITKVKGKIFF----LPEEI-IVPRKISVEDYLKAVASLY 106

Query: 150 GGSASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNV 209
           G   +  +  D+  +V V   KK L  L    IR V   +TL       V+DDP+  ++ 
Sbjct: 107 GVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166

Query: 210 VSSYAA--NTLAVVYDRGLI 227
            S +    + L ++ ++G++
Sbjct: 167 DSKHKVLKSILEILKEKGIV 186


>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
           Klebsiella Pneumoniae
 pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
           Klebsiella Pneumoniae
 pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
           Klebsiella Pneumoniae
 pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
           Klebsiella Pneumoniae
          Length = 364

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 21/120 (17%)

Query: 148 IHGGSASAFKHDDSKWN-----VRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDD 202
           I  G+  A KH +S ++     VRV+  ++ +P  G            L+      +ID 
Sbjct: 140 IEQGTLGAVKHFESHFDRFRPEVRVRWREQNVPGSG------------LWFDLGPHLIDQ 187

Query: 203 PLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRYYI 262
            L +  +  S   N +A + D   I   +DW      YP    +LH   L    S R+ +
Sbjct: 188 ALQLFGLPQSVQGN-IATLRDGAEI---NDWAHVVLNYPAHKVILHCSXLVAGGSSRFTV 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,032,754
Number of Sequences: 62578
Number of extensions: 388489
Number of successful extensions: 869
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 6
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)