Query 024568
Match_columns 265
No_of_seqs 116 out of 317
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6E-117 1E-121 861.0 14.9 254 2-264 192-448 (506)
2 PF03141 Methyltransf_29: Puta 99.7 2.4E-17 5.3E-22 162.4 4.5 140 110-265 32-195 (506)
3 PF07942 N2227: N2227-like pro 91.4 0.059 1.3E-06 50.5 0.1 61 11-73 184-244 (270)
4 PF13489 Methyltransf_23: Meth 90.1 0.066 1.4E-06 42.9 -0.7 70 181-257 22-92 (161)
5 PF08241 Methyltransf_11: Meth 84.9 0.21 4.6E-06 36.1 -0.6 67 186-256 1-73 (95)
6 PRK00517 prmA ribosomal protei 82.5 1.5 3.3E-05 39.4 3.7 20 12-31 196-215 (250)
7 PRK11088 rrmA 23S rRNA methylt 74.9 1 2.2E-05 40.9 0.2 21 12-32 164-184 (272)
8 PF01555 N6_N4_Mtase: DNA meth 74.2 1.4 3.1E-05 37.1 0.9 22 11-32 38-59 (231)
9 PLN02232 ubiquinone biosynthes 73.2 1.1 2.3E-05 37.8 -0.1 17 11-27 63-79 (160)
10 PF06859 Bin3: Bicoid-interact 73.0 2 4.2E-05 35.7 1.4 21 15-37 30-50 (110)
11 PRK13699 putative methylase; P 72.6 3.9 8.5E-05 36.9 3.4 17 11-27 54-70 (227)
12 smart00828 PKS_MT Methyltransf 71.5 1.1 2.4E-05 38.8 -0.4 69 183-255 1-79 (224)
13 PF01209 Ubie_methyltran: ubiE 66.3 1.4 3E-05 39.9 -0.9 17 11-27 135-151 (233)
14 PRK10258 biotin biosynthesis p 65.9 4.2 9.2E-05 36.0 2.1 71 180-253 41-113 (251)
15 PRK10258 biotin biosynthesis p 65.5 0.75 1.6E-05 40.8 -2.7 28 4-31 115-142 (251)
16 TIGR02081 metW methionine bios 65.5 2.3 4.9E-05 36.5 0.3 71 184-256 16-88 (194)
17 PF06080 DUF938: Protein of un 64.8 14 0.00031 33.5 5.3 64 12-78 124-204 (204)
18 PF00891 Methyltransf_2: O-met 64.8 2.6 5.6E-05 37.2 0.5 76 176-256 95-171 (241)
19 TIGR00477 tehB tellurite resis 63.6 4.9 0.00011 34.8 2.0 63 11-82 115-180 (195)
20 PTZ00146 fibrillarin; Provisio 63.2 2.6 5.6E-05 40.1 0.3 19 10-28 218-236 (293)
21 PLN02233 ubiquinone biosynthes 62.8 2.3 5E-05 38.7 -0.2 18 11-28 164-181 (261)
22 PF13489 Methyltransf_23: Meth 59.8 1.1 2.3E-05 35.8 -2.6 22 11-32 97-118 (161)
23 PRK11036 putative S-adenosyl-L 59.2 2.5 5.5E-05 37.8 -0.5 71 183-256 46-125 (255)
24 KOG4300 Predicted methyltransf 57.1 2.6 5.6E-05 39.3 -0.8 16 12-27 165-180 (252)
25 PRK08317 hypothetical protein; 56.8 4.2 9.1E-05 34.5 0.4 71 182-255 20-99 (241)
26 PRK00121 trmB tRNA (guanine-N( 56.3 2.3 5E-05 37.1 -1.3 22 11-32 138-159 (202)
27 PRK00107 gidB 16S rRNA methylt 55.7 9.4 0.0002 33.5 2.4 38 14-69 130-167 (187)
28 smart00828 PKS_MT Methyltransf 53.8 2.4 5.3E-05 36.6 -1.5 19 12-30 87-105 (224)
29 TIGR02072 BioC biotin biosynth 53.5 25 0.00055 29.8 4.7 20 11-30 117-136 (240)
30 PRK01683 trans-aconitate 2-met 53.4 2.1 4.6E-05 38.0 -2.0 24 7-30 108-131 (258)
31 PLN02244 tocopherol O-methyltr 52.7 2.6 5.7E-05 39.9 -1.6 21 10-30 204-224 (340)
32 PF01234 NNMT_PNMT_TEMT: NNMT/ 52.3 5.4 0.00012 37.2 0.4 15 16-30 186-200 (256)
33 PF13051 DUF3912: Protein of u 52.1 3.9 8.5E-05 30.8 -0.4 10 227-236 57-66 (68)
34 PRK11207 tellurite resistance 51.8 5.4 0.00012 34.6 0.3 62 11-81 116-180 (197)
35 PF05148 Methyltransf_8: Hypot 50.6 2.1 4.6E-05 39.4 -2.5 56 11-81 140-200 (219)
36 PTZ00098 phosphoethanolamine N 50.6 5 0.00011 36.6 -0.1 21 11-31 138-158 (263)
37 PF05401 NodS: Nodulation prot 50.5 7.7 0.00017 35.3 1.1 87 162-256 24-119 (201)
38 TIGR01983 UbiG ubiquinone bios 50.3 5.7 0.00012 34.1 0.2 59 144-202 7-66 (224)
39 TIGR00138 gidB 16S rRNA methyl 50.1 10 0.00022 32.9 1.7 17 14-30 127-143 (181)
40 PRK14103 trans-aconitate 2-met 50.0 9.3 0.0002 34.1 1.5 71 181-255 29-101 (255)
41 PF06325 PrmA: Ribosomal prote 49.8 8.9 0.00019 36.3 1.4 19 14-32 244-262 (295)
42 PRK11873 arsM arsenite S-adeno 49.4 5.2 0.00011 35.9 -0.2 21 11-31 165-185 (272)
43 PRK04266 fibrillarin; Provisio 48.9 4 8.7E-05 36.8 -1.0 17 12-28 159-175 (226)
44 PRK08287 cobalt-precorrin-6Y C 48.8 19 0.00041 30.5 3.2 40 13-69 115-154 (187)
45 PRK07402 precorrin-6B methylas 47.7 12 0.00026 32.1 1.8 20 12-31 125-144 (196)
46 TIGR00740 methyltransferase, p 47.7 3.6 7.7E-05 36.4 -1.5 21 10-30 142-162 (239)
47 PRK11705 cyclopropane fatty ac 46.5 9.9 0.00021 36.9 1.2 68 183-255 169-240 (383)
48 PF14881 Tubulin_3: Tubulin do 46.2 11 0.00024 33.1 1.4 33 182-214 77-118 (180)
49 cd02440 AdoMet_MTases S-adenos 46.1 14 0.00031 25.6 1.7 70 184-255 1-78 (107)
50 PRK06202 hypothetical protein; 46.1 11 0.00023 33.2 1.3 77 180-256 59-142 (232)
51 COG2264 PrmA Ribosomal protein 44.9 9.8 0.00021 36.5 0.9 17 14-30 248-264 (300)
52 COG2226 UbiE Methylase involve 44.6 4.7 0.0001 37.2 -1.3 22 11-32 138-161 (238)
53 TIGR00446 nop2p NOL1/NOP2/sun 44.5 24 0.00052 32.2 3.3 22 11-32 181-202 (264)
54 KOG3045 Predicted RNA methylas 43.9 3.7 8E-05 39.4 -2.1 56 11-81 246-306 (325)
55 PRK11207 tellurite resistance 43.0 9.7 0.00021 33.0 0.5 67 183-254 32-106 (197)
56 PF02353 CMAS: Mycolic acid cy 42.6 9 0.0002 35.6 0.3 75 177-256 60-140 (273)
57 PRK07580 Mg-protoporphyrin IX 42.3 13 0.00028 32.0 1.2 70 182-254 64-138 (230)
58 TIGR00477 tehB tellurite resis 42.0 8.2 0.00018 33.4 -0.1 67 183-254 32-105 (195)
59 PRK11524 putative methyltransf 40.4 18 0.00039 33.3 1.9 20 11-30 62-81 (284)
60 PRK14103 trans-aconitate 2-met 39.8 3.7 8.1E-05 36.7 -2.6 22 9-30 106-127 (255)
61 KOG1975 mRNA cap methyltransfe 38.9 16 0.00034 36.2 1.2 19 14-32 222-240 (389)
62 PRK08317 hypothetical protein; 38.8 9.6 0.00021 32.3 -0.2 19 12-30 107-125 (241)
63 TIGR02072 BioC biotin biosynth 38.4 8.1 0.00017 32.9 -0.7 20 183-202 36-55 (240)
64 TIGR00537 hemK_rel_arch HemK-r 38.4 7.2 0.00016 32.9 -1.0 21 11-31 122-142 (179)
65 PTZ00098 phosphoethanolamine N 37.2 14 0.00031 33.6 0.7 19 183-201 54-72 (263)
66 TIGR00452 methyltransferase, p 36.9 8.1 0.00018 36.8 -1.0 22 11-32 207-228 (314)
67 TIGR02752 MenG_heptapren 2-hep 36.8 6.6 0.00014 34.1 -1.5 18 12-29 134-151 (231)
68 PRK15451 tRNA cmo(5)U34 methyl 36.5 6.8 0.00015 35.1 -1.5 19 11-29 146-164 (247)
69 PRK00107 gidB 16S rRNA methylt 36.3 22 0.00048 31.1 1.7 85 162-251 28-120 (187)
70 PRK00377 cbiT cobalt-precorrin 36.3 23 0.0005 30.5 1.8 32 14-58 130-161 (198)
71 PRK15068 tRNA mo(5)U34 methylt 35.3 42 0.0009 31.8 3.5 20 183-202 124-143 (322)
72 PRK14901 16S rRNA methyltransf 35.1 39 0.00084 33.1 3.3 21 12-32 367-387 (434)
73 PRK11188 rrmJ 23S rRNA methylt 35.0 8.7 0.00019 33.9 -1.0 18 11-28 147-164 (209)
74 TIGR00563 rsmB ribosomal RNA s 34.9 34 0.00073 33.4 2.9 22 11-32 350-371 (426)
75 PLN02396 hexaprenyldihydroxybe 34.8 12 0.00027 35.7 -0.1 15 14-28 220-234 (322)
76 PRK11705 cyclopropane fatty ac 34.8 7.7 0.00017 37.7 -1.5 20 11-30 249-268 (383)
77 smart00437 TOP1Ac Bacterial DN 34.7 13 0.00027 34.4 -0.1 17 216-243 35-51 (259)
78 KOG1271 Methyltransferases [Ge 34.5 16 0.00034 33.7 0.5 21 10-30 162-182 (227)
79 KOG2798 Putative trehalase [Ca 34.1 40 0.00088 33.2 3.2 54 16-70 283-336 (369)
80 TIGR00091 tRNA (guanine-N(7)-) 33.5 22 0.00047 30.7 1.2 22 11-32 114-135 (194)
81 PRK11036 putative S-adenosyl-L 32.9 14 0.0003 33.0 -0.1 20 11-30 131-150 (255)
82 PRK15068 tRNA mo(5)U34 methylt 32.4 8.9 0.00019 36.3 -1.5 20 11-30 208-227 (322)
83 KOG1150 Predicted molecular ch 32.4 11 0.00023 35.0 -0.9 15 14-28 39-54 (250)
84 PRK12335 tellurite resistance 31.7 15 0.00032 33.7 -0.1 66 184-254 123-195 (287)
85 PF02475 Met_10: Met-10+ like- 31.4 26 0.00057 31.3 1.4 19 183-201 103-121 (200)
86 cd00186 TOP1Ac DNA Topoisomera 31.0 17 0.00037 35.2 0.2 17 216-243 109-125 (381)
87 TIGR03534 RF_mod_PrmC protein- 30.5 66 0.0014 27.9 3.7 19 12-30 200-218 (251)
88 PLN02244 tocopherol O-methyltr 29.2 28 0.00061 32.9 1.3 71 181-255 118-198 (340)
89 COG4627 Uncharacterized protei 28.3 15 0.00032 33.0 -0.8 25 12-36 69-93 (185)
90 PRK11805 N5-glutamine S-adenos 28.2 14 0.00031 34.7 -0.9 64 183-250 135-208 (307)
91 TIGR00406 prmA ribosomal prote 28.1 20 0.00043 33.1 0.0 70 183-254 161-236 (288)
92 PF03291 Pox_MCEL: mRNA cappin 27.6 16 0.00035 35.0 -0.6 16 15-30 172-187 (331)
93 PRK00312 pcm protein-L-isoaspa 27.5 22 0.00047 30.8 0.2 19 183-201 80-98 (212)
94 PLN02336 phosphoethanolamine N 27.5 19 0.00042 35.1 -0.2 20 11-30 351-370 (475)
95 PRK12335 tellurite resistance 27.3 12 0.00026 34.4 -1.6 17 11-27 205-221 (287)
96 COG2871 NqrF Na+-transporting 27.0 44 0.00096 32.8 2.2 45 19-72 164-208 (410)
97 PRK05134 bifunctional 3-demeth 26.8 17 0.00037 31.6 -0.6 70 184-256 51-127 (233)
98 TIGR01934 MenG_MenH_UbiE ubiqu 26.7 25 0.00054 29.6 0.4 20 182-201 40-59 (223)
99 PRK10901 16S rRNA methyltransf 26.6 30 0.00065 33.8 1.0 21 12-32 355-375 (427)
100 PF12147 Methyltransf_20: Puta 26.6 33 0.00072 33.3 1.2 15 17-31 237-251 (311)
101 PF01728 FtsJ: FtsJ-like methy 26.5 46 0.001 27.9 2.0 77 177-255 19-103 (181)
102 PLN02490 MPBQ/MSBQ methyltrans 26.5 20 0.00044 34.6 -0.2 20 11-30 197-216 (340)
103 PF01131 Topoisom_bac: DNA top 26.3 25 0.00053 34.3 0.3 17 216-243 140-157 (403)
104 cd08910 START_STARD2-like Lipi 25.9 58 0.0013 28.8 2.6 40 44-83 6-46 (207)
105 PF04563 RNA_pol_Rpb2_1: RNA p 25.8 29 0.00063 30.5 0.7 11 21-31 130-140 (203)
106 PRK09489 rsmC 16S ribosomal RN 25.7 19 0.00042 34.5 -0.5 68 184-254 199-272 (342)
107 KOG2899 Predicted methyltransf 25.6 54 0.0012 31.4 2.4 29 3-31 182-211 (288)
108 PRK14902 16S rRNA methyltransf 25.5 69 0.0015 31.4 3.3 21 12-32 362-382 (444)
109 PRK14968 putative methyltransf 25.4 30 0.00064 28.5 0.6 67 182-253 24-100 (188)
110 TIGR01177 conserved hypothetic 24.6 25 0.00054 33.0 0.0 21 11-31 276-296 (329)
111 PF02353 CMAS: Mycolic acid cy 23.4 24 0.00051 32.9 -0.4 18 11-28 148-165 (273)
112 PF08242 Methyltransf_12: Meth 23.3 43 0.00092 25.0 1.1 69 186-256 1-79 (99)
113 PLN02233 ubiquinone biosynthes 22.7 54 0.0012 29.8 1.8 70 183-255 75-157 (261)
114 PF03269 DUF268: Caenorhabditi 22.7 19 0.00042 32.2 -1.1 19 12-30 94-112 (177)
115 PLN02336 phosphoethanolamine N 22.3 23 0.0005 34.6 -0.7 71 182-256 267-345 (475)
116 PF07021 MetW: Methionine bios 21.8 24 0.00052 31.9 -0.6 66 183-251 15-83 (193)
117 KOG2530 Members of tubulin/Fts 21.8 37 0.0008 34.7 0.6 41 182-222 207-257 (483)
118 PRK13942 protein-L-isoaspartat 21.7 26 0.00057 30.8 -0.4 19 183-201 78-96 (212)
119 cd08871 START_STARD10-like Lip 21.4 1E+02 0.0022 27.1 3.2 19 64-82 25-43 (222)
120 TIGR02469 CbiT precorrin-6Y C5 21.3 1E+02 0.0022 23.3 2.8 30 183-214 21-51 (124)
121 COG0500 SmtA SAM-dependent met 20.9 32 0.00069 24.1 -0.0 22 10-31 136-157 (257)
122 PRK05776 DNA topoisomerase I; 20.8 35 0.00076 35.9 0.2 12 221-243 305-316 (670)
123 PRK14904 16S rRNA methyltransf 20.7 97 0.0021 30.5 3.3 22 11-32 359-380 (445)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.5e-117 Score=861.02 Aligned_cols=254 Identities=53% Similarity=0.960 Sum_probs=245.9
Q ss_pred ccccccCcEEEEEeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeeecCeEEEecCCC
Q 024568 2 MNIFVSGGIYLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLSD 81 (265)
Q Consensus 2 ~~w~~~dG~~LlEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~~aIwqKp~~ 81 (265)
|+|+++||+||+|||||||||||||||||||| +++++++++||++|++||++|||++|++++||||||||+|
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCC
Confidence 79999999999999999999999999999996 5678999999999999999999999999999999999999
Q ss_pred chhhcccCCCCCCCCCCCCCCCCCCccccCCCCccccCCCCccccccCCCCCCcccccCCCccccc--ccCCCccccccc
Q 024568 82 SSCYNKLSNPDVYPPKCDDSLEPDSAWYTPLRPCVVVPRPNLKKSVLESMPKWPERLHVAPERISD--IHGGSASAFKHD 159 (265)
Q Consensus 82 ~~Cy~~r~~~~~~pplC~~~~dpd~aWy~~m~~Ci~p~p~~~~~~~~~~~~~WP~RL~~~P~rl~~--i~g~s~e~F~~D 159 (265)
|+||.+|+ ..+.||+|++++|||++||+||++|||++|+..++.+++++++||+||+++|+||++ ++|+++|+|++|
T Consensus 264 ~~Cy~~r~-~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~D 342 (506)
T PF03141_consen 264 NSCYQKRK-PGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKED 342 (506)
T ss_pred chhhhhcc-CCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHH
Confidence 99999998 579999999899999999999999999999988889999999999999999999996 789999999999
Q ss_pred hhhHHHHHHHHHhhcC-CCCCCCceeeeccCCcccchhhhccCCCceEEEeeccCCCCcccceecccccccccccccccC
Q 024568 160 DSKWNVRVKHYKKLLP-ALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFS 238 (265)
Q Consensus 160 t~~W~~~V~~Y~~~l~-~i~~~~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~~nTL~vIydRGLIG~yHDWCEaFs 238 (265)
|++|+++|++|+++++ .|++++||||||||||||||||||+++|||||||||+.++|||+|||||||||+|||||||||
T Consensus 343 t~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fs 422 (506)
T PF03141_consen 343 TKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFS 422 (506)
T ss_pred HHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccC
Confidence 9999999999999886 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceeccccccccCCCcceec
Q 024568 239 TYPRTYDLLHLDGLFTAESHRYYITW 264 (265)
Q Consensus 239 TYPRTYDLlHA~~lfS~~~~rC~i~~ 264 (265)
|||||||||||+||||.+++||+|++
T Consensus 423 TYPRTYDLlHA~~lfs~~~~rC~~~~ 448 (506)
T PF03141_consen 423 TYPRTYDLLHADGLFSLYKDRCEMED 448 (506)
T ss_pred CCCcchhheehhhhhhhhcccccHHH
Confidence 99999999999999999999999874
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.67 E-value=2.4e-17 Score=162.42 Aligned_cols=140 Identities=19% Similarity=0.390 Sum_probs=118.7
Q ss_pred cCCCCccccCCCCccccccCCCCCCccccc------CCCcccccccCCC--------ccccccchhhHHHHHHHHHhhc-
Q 024568 110 TPLRPCVVVPRPNLKKSVLESMPKWPERLH------VAPERISDIHGGS--------ASAFKHDDSKWNVRVKHYKKLL- 174 (265)
Q Consensus 110 ~~m~~Ci~p~p~~~~~~~~~~~~~WP~RL~------~~P~rl~~i~g~s--------~e~F~~Dt~~W~~~V~~Y~~~l- 174 (265)
.+...|+.|+|.+++. |.+||++.+ ++.++|++.++.+ .-.|.....++++.+.+|...+
T Consensus 32 ~~~~~CLVp~P~gYk~-----P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~ 106 (506)
T PF03141_consen 32 EERLRCLVPPPKGYKT-----PIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIA 106 (506)
T ss_pred CCCCccccCCCccCCC-----CCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHH
Confidence 3567899999998843 899999884 4677787655533 4569999999999999997533
Q ss_pred ---CC-CCCCCceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecccc---cccccccccccCCCC-Cccc
Q 024568 175 ---PA-LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL---IGTYHDWCEAFSTYP-RTYD 245 (265)
Q Consensus 175 ---~~-i~~~~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydRGL---IG~yHDWCEaFsTYP-RTYD 245 (265)
+. ...+.||-++|.++|.|+|||.|.+..|-+|.+.|.+. +++.+++.|||+ ||++-.-.. +|| ++||
T Consensus 107 ~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rL---Pfp~~~fD 183 (506)
T PF03141_consen 107 EMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRL---PFPSNAFD 183 (506)
T ss_pred HHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccc---cCCccchh
Confidence 32 26699999999999999999999999999999999988 899999999998 788877788 788 9999
Q ss_pred ceeccccccccCCCcceecC
Q 024568 246 LLHLDGLFTAESHRYYITWN 265 (265)
Q Consensus 246 LlHA~~lfS~~~~rC~i~~~ 265 (265)
|+|+ .||.+.|.
T Consensus 184 mvHc--------src~i~W~ 195 (506)
T PF03141_consen 184 MVHC--------SRCLIPWH 195 (506)
T ss_pred hhhc--------ccccccch
Confidence 9999 88998883
No 3
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=91.38 E-value=0.059 Score=50.49 Aligned_cols=61 Identities=20% Similarity=0.534 Sum_probs=42.1
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeeecCe
Q 024568 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDI 73 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~~ 73 (265)
||-.|.++|+|||+||=-||-. |.....+ ..++..++=-+++|.++++++=|+.+.++..+
T Consensus 184 Yi~tI~~lLkpgG~WIN~GPLl-yh~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWINFGPLL-YHFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred HHHHHHHHhccCCEEEecCCcc-ccCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence 4456789999999999999976 4321110 11122244448889999999999998776533
No 4
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.11 E-value=0.066 Score=42.90 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=43.3
Q ss_pred CceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecccccccccccccccCCCCCcccceeccccccccC
Q 024568 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAES 257 (265)
Q Consensus 181 ~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydRGLIG~yHDWCEaFsTYPRTYDLlHA~~lfS~~~ 257 (265)
.-.+|||..||.|.|+..|.+.+. .|+-++. +..+.. +-....-++=.++ .--+.+||+|.+.++|....
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc
Confidence 345899999999999999987766 5555555 233322 1111111111111 01248999999999998654
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=84.91 E-value=0.21 Score=36.12 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=37.8
Q ss_pred eccCCcccchhhhccCC-CceEEEeeccCC-CCcccceecccccc---cccccccccCCCC-Ccccceecccccccc
Q 024568 186 MDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIG---TYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (265)
Q Consensus 186 MDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIydRGLIG---~yHDWCEaFsTYP-RTYDLlHA~~lfS~~ 256 (265)
+|+.||.|-++++|.+. +. +|+-+|. +..+...-+|.--. ..+.=-+.+ .+| .+||++++.++|...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec
Confidence 68999999999999887 33 3333333 22333333332211 222223333 333 999999999998754
No 6
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=82.49 E-value=1.5 Score=39.45 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=16.9
Q ss_pred EEEeeceecCCceEEeccCC
Q 024568 12 LLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pP 31 (265)
+-++-|+|+|||++|+|+.-
T Consensus 196 ~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 196 APDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHhcCCCcEEEEEECc
Confidence 34788999999999999873
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=74.92 E-value=1 Score=40.85 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEeeceecCCceEEeccCCc
Q 024568 12 LLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv 32 (265)
+-|+.|+|+|||+||...|..
T Consensus 164 ~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 164 AEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred HHHHHhhccCCCEEEEEeCCC
Confidence 458999999999999987753
No 8
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=74.21 E-value=1.4 Score=37.06 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.6
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
.|.|+-|||+|||++++.....
T Consensus 38 ~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 38 WLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHhhcCCCeeEEEEecch
Confidence 3568899999999999987754
No 9
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=73.16 E-value=1.1 Score=37.81 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.6
Q ss_pred EEEEeeceecCCceEEe
Q 024568 11 YLLEVHRILRPGGFWVL 27 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~ 27 (265)
.|-|+-|||+|||+++.
T Consensus 63 ~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 63 AMKEMYRVLKPGSRVSI 79 (160)
T ss_pred HHHHHHHHcCcCeEEEE
Confidence 35689999999999985
No 10
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=73.01 E-value=2 Score=35.71 Aligned_cols=21 Identities=33% Similarity=0.789 Sum_probs=14.0
Q ss_pred eeceecCCceEEeccCCcccccc
Q 024568 15 VHRILRPGGFWVLSGPPVNYEHR 37 (265)
Q Consensus 15 vdRvLRPGGyfv~S~pPv~~k~~ 37 (265)
+=++|||||+||+-..| |+.+
T Consensus 30 ~~~~L~pGG~lilEpQ~--w~sY 50 (110)
T PF06859_consen 30 IYSLLRPGGILILEPQP--WKSY 50 (110)
T ss_dssp HHHHEEEEEEEEEE-----HHHH
T ss_pred HHHhhCCCCEEEEeCCC--cHHH
Confidence 34579999999999887 6553
No 11
>PRK13699 putative methylase; Provisional
Probab=72.64 E-value=3.9 Score=36.88 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=14.1
Q ss_pred EEEEeeceecCCceEEe
Q 024568 11 YLLEVHRILRPGGFWVL 27 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~ 27 (265)
.+-|+-|||+|||+++.
T Consensus 54 ~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 54 ACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 35688899999999975
No 12
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=71.45 E-value=1.1 Score=38.77 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=39.3
Q ss_pred eeeeccCCcccchhhhccCC-CceEEEeeccCC-CCccccee----ccccc---cccc-ccccccCCCCCcccceecccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVY----DRGLI---GTYH-DWCEAFSTYPRTYDLLHLDGL 252 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIy----dRGLI---G~yH-DWCEaFsTYPRTYDLlHA~~l 252 (265)
+.|+|..||.|+++..|... |- -+|+-++- ++.+...- ++|+- -..+ |-.+. .+|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998888653 21 13333333 33333222 23442 2222 22121 35689999999887
Q ss_pred ccc
Q 024568 253 FTA 255 (265)
Q Consensus 253 fS~ 255 (265)
|..
T Consensus 77 l~~ 79 (224)
T smart00828 77 IHH 79 (224)
T ss_pred HHh
Confidence 754
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=66.27 E-value=1.4 Score=39.90 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=14.7
Q ss_pred EEEEeeceecCCceEEe
Q 024568 11 YLLEVHRILRPGGFWVL 27 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~ 27 (265)
.|-|+-|||||||.++.
T Consensus 135 ~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVI 151 (233)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 46789999999999886
No 14
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=65.90 E-value=4.2 Score=35.97 Aligned_cols=71 Identities=15% Similarity=0.027 Sum_probs=39.0
Q ss_pred CCceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecccc-cccccccccccCCCCCcccceeccccc
Q 024568 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEAFSTYPRTYDLLHLDGLF 253 (265)
Q Consensus 180 ~~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydRGL-IG~yHDWCEaFsTYPRTYDLlHA~~lf 253 (265)
.....|+|+.||-|.++..|..... .|+=+|- +.-|...-+++- +...+.-.|.+.-...+||+|-++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV 113 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh
Confidence 3467899999999999888865431 3343443 333333323321 111111123333223789999876554
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=65.55 E-value=0.75 Score=40.76 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.6
Q ss_pred ccccCcEEEEEeeceecCCceEEeccCC
Q 024568 4 IFVSGGIYLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 4 w~~~dG~~LlEvdRvLRPGGyfv~S~pP 31 (265)
|..+-..+|-|+-|+|+|||++++|.+.
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4344445678899999999999998763
No 16
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=65.50 E-value=2.3 Score=36.45 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=39.8
Q ss_pred eeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecccccccccccccccCCCC-Ccccceecccccccc
Q 024568 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (265)
Q Consensus 184 NVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydRGLIG~yHDWCEaFsTYP-RTYDLlHA~~lfS~~ 256 (265)
+|+|..||.|.++.+|.+..-. +++=++. +.-+...-.+|+-=+..|-.+.+..+| .+||+|-+++.|...
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 6999999999999998654321 2222232 222323333443111122222222354 799999998877643
No 17
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=64.79 E-value=14 Score=33.49 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=39.4
Q ss_pred EEEeeceecCCceEEeccCCccccccccCCCcc----HHHHH--------HHHHHHHHHHHhcccceeeeec-----CeE
Q 024568 12 LLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTT----IEEQR--------SDYKKLQDLLTSMCFKLYAKKD-----DIA 74 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~----~e~~~--------~~~~~~~~l~~~mCW~~va~~~-----~~a 74 (265)
+-++-|+|+|||.+++=|| |+.+-+-=... ++.|+ .+.+.++++|++-..+++.... .+.
T Consensus 124 f~~a~~~L~~gG~L~~YGP---F~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~L 200 (204)
T PF06080_consen 124 FAGAARLLKPGGLLFLYGP---FNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLL 200 (204)
T ss_pred HHHHHHhCCCCCEEEEeCC---cccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEE
Confidence 3467899999999999999 33210000000 11111 1245688999999998876542 367
Q ss_pred EEec
Q 024568 75 VWQK 78 (265)
Q Consensus 75 IwqK 78 (265)
||+|
T Consensus 201 vfrk 204 (204)
T PF06080_consen 201 VFRK 204 (204)
T ss_pred EEeC
Confidence 8876
No 18
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=64.77 E-value=2.6 Score=37.18 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCCCCCceeeeccCCcccchhhhccC-CCceEEEeeccCCCCcccceecccccccccccccccCCCCCcccceecccccc
Q 024568 176 ALGTDKIRNVMDMNTLYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFT 254 (265)
Q Consensus 176 ~i~~~~iRNVMDMnAg~GGFAAAL~~-~pvWVMNVVP~~~~nTL~vIydRGLIG~yHDWCEaFsTYPRTYDLlHA~~lfS 254 (265)
....+.++.|+|...|.|.|+++|+. .|-.- ++=.|.|..+..+-+ .-.+-.-=..-|.++|. ||++...+++.
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~--~~v~Dlp~v~~~~~~--~~rv~~~~gd~f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLR--ATVFDLPEVIEQAKE--ADRVEFVPGDFFDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSE--EEEEE-HHHHCCHHH--TTTEEEEES-TTTCCSS-ESEEEEESSGG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCc--ceeeccHhhhhcccc--ccccccccccHHhhhcc-ccceeeehhhh
Confidence 45778899999999999999999975 45432 222344444444444 10011111223578999 99999988886
Q ss_pred cc
Q 024568 255 AE 256 (265)
Q Consensus 255 ~~ 256 (265)
..
T Consensus 170 ~~ 171 (241)
T PF00891_consen 170 DW 171 (241)
T ss_dssp GS
T ss_pred hc
Confidence 54
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=63.59 E-value=4.9 Score=34.79 Aligned_cols=63 Identities=11% Similarity=0.284 Sum_probs=32.8
Q ss_pred EEEEeeceecCCceEE-eccC-Ccccccc-ccCCCccHHHHHHHHHHHHHHHHhcccceeeeecCeEEEecCCCc
Q 024568 11 YLLEVHRILRPGGFWV-LSGP-PVNYEHR-WRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLSDS 82 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv-~S~p-Pv~~k~~-~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~~aIwqKp~~~ 82 (265)
++-++.|+|+|||+++ .... +..+... -..+.-+++ +|.++.+. |+.+.-...+..|.|...+
T Consensus 115 ~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~-------el~~~f~~--~~~~~~~e~~~~~~~~~~~ 180 (195)
T TIGR00477 115 IIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKED-------ELRQYYAD--WELLKYNEAVGELHATDAN 180 (195)
T ss_pred HHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHH-------HHHHHhCC--CeEEEeecccccccccccC
Confidence 4457889999999854 3110 0000000 001222333 34445554 8888777667777776543
No 20
>PTZ00146 fibrillarin; Provisional
Probab=63.24 E-value=2.6 Score=40.14 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.1
Q ss_pred EEEEEeeceecCCceEEec
Q 024568 10 IYLLEVHRILRPGGFWVLS 28 (265)
Q Consensus 10 ~~LlEvdRvLRPGGyfv~S 28 (265)
++++|+.|+|+|||+|+++
T Consensus 218 il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred HHHHHHHHhccCCCEEEEE
Confidence 3457899999999999985
No 21
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=62.83 E-value=2.3 Score=38.71 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.5
Q ss_pred EEEEeeceecCCceEEec
Q 024568 11 YLLEVHRILRPGGFWVLS 28 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S 28 (265)
+|-|+-|||||||+++.+
T Consensus 164 ~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 164 AMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred HHHHHHHHcCcCcEEEEE
Confidence 466899999999999875
No 22
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=59.80 E-value=1.1 Score=35.81 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=18.2
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-++-|+|+|||+++++-|-.
T Consensus 97 ~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 97 FLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHhcCCCCEEEEEEcCC
Confidence 4557789999999999998754
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=59.23 E-value=2.5 Score=37.79 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=43.1
Q ss_pred eeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceec----ccccc---cccccccccCC-CCCcccceeccccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD----RGLIG---TYHDWCEAFST-YPRTYDLLHLDGLF 253 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIyd----RGLIG---~yHDWCEaFsT-YPRTYDLlHA~~lf 253 (265)
..|+|..||-|.++.+|.... -+|+=+|. +.-|...-+ .|+.. +.+.=-+.+.. -+.+||+|.+.++|
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 489999999999999998764 35565555 444443322 23321 11111111222 35899999998887
Q ss_pred ccc
Q 024568 254 TAE 256 (265)
Q Consensus 254 S~~ 256 (265)
...
T Consensus 123 ~~~ 125 (255)
T PRK11036 123 EWV 125 (255)
T ss_pred Hhh
Confidence 643
No 24
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=57.14 E-value=2.6 Score=39.26 Aligned_cols=16 Identities=56% Similarity=0.951 Sum_probs=14.2
Q ss_pred EEEeeceecCCceEEe
Q 024568 12 LLEVHRILRPGGFWVL 27 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~ 27 (265)
|-|+-|||||||-+++
T Consensus 165 L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 165 LNEVRRLLRPGGRIIF 180 (252)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 5689999999998887
No 25
>PRK08317 hypothetical protein; Provisional
Probab=56.84 E-value=4.2 Score=34.45 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=38.1
Q ss_pred ceeeeccCCcccchhhhccCC--C-ceEEEeeccCC-CCcccceecc--cccccccccccccC--CCC-Ccccceecccc
Q 024568 182 IRNVMDMNTLYGGFAAAVIDD--P-LWVMNVVSSYA-ANTLAVVYDR--GLIGTYHDWCEAFS--TYP-RTYDLLHLDGL 252 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~~--p-vWVMNVVP~~~-~nTL~vIydR--GLIG~yHDWCEaFs--TYP-RTYDLlHA~~l 252 (265)
-..|+|+.||-|+++..+... | . +|+=++. ++.+...-++ +.-...+--+..+. .++ -+||+||+..+
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEG---RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCc---EEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 357999999999999887653 2 2 3333333 3333333333 11001111111111 133 68999999888
Q ss_pred ccc
Q 024568 253 FTA 255 (265)
Q Consensus 253 fS~ 255 (265)
|..
T Consensus 97 ~~~ 99 (241)
T PRK08317 97 LQH 99 (241)
T ss_pred hhc
Confidence 764
No 26
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=56.26 E-value=2.3 Score=37.08 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=18.9
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-|+.|+|+|||+|+++.+..
T Consensus 138 ~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 138 FLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred HHHHHHHHcCCCCEEEEEcCCH
Confidence 4678899999999999998754
No 27
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=55.74 E-value=9.4 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=28.5
Q ss_pred EeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeee
Q 024568 14 EVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAK 69 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~ 69 (265)
++-|+|||||+++..-++. .-..++++++.+=|.+-+.
T Consensus 130 ~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 130 LCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred HHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEeee
Confidence 5679999999999986543 1335888999998875543
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=53.78 E-value=2.4 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.0
Q ss_pred EEEeeceecCCceEEeccC
Q 024568 12 LLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~p 30 (265)
|-++.|+|+|||+++++.+
T Consensus 87 l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 87 FSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHcCCCCEEEEEEc
Confidence 4467799999999999876
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=53.52 E-value=25 Score=29.82 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.1
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
+|-++.|+|+|||+++++.+
T Consensus 117 ~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 117 ALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHcCCCcEEEEEeC
Confidence 46678899999999999865
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=53.38 E-value=2.1 Score=37.97 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.4
Q ss_pred cCcEEEEEeeceecCCceEEeccC
Q 024568 7 SGGIYLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 7 ~dG~~LlEvdRvLRPGGyfv~S~p 30 (265)
+-..+|-++-|+|+|||.|+.+.|
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECC
Confidence 334567788999999999999865
No 31
>PLN02244 tocopherol O-methyltransferase
Probab=52.66 E-value=2.6 Score=39.86 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.2
Q ss_pred EEEEEeeceecCCceEEeccC
Q 024568 10 IYLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 10 ~~LlEvdRvLRPGGyfv~S~p 30 (265)
.+|-|+-|+|||||.||++..
T Consensus 204 ~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 204 KFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 356688999999999999754
No 32
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=52.27 E-value=5.4 Score=37.20 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=12.2
Q ss_pred eceecCCceEEeccC
Q 024568 16 HRILRPGGFWVLSGP 30 (265)
Q Consensus 16 dRvLRPGGyfv~S~p 30 (265)
=++|||||++|+.+-
T Consensus 186 ~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 186 SSLLKPGGHLILAGV 200 (256)
T ss_dssp HTTEEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEEE
Confidence 378999999999643
No 33
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=52.14 E-value=3.9 Score=30.80 Aligned_cols=10 Identities=50% Similarity=1.750 Sum_probs=8.8
Q ss_pred cccccccccc
Q 024568 227 IGTYHDWCEA 236 (265)
Q Consensus 227 IG~yHDWCEa 236 (265)
+|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 7899999993
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=51.75 E-value=5.4 Score=34.57 Aligned_cols=62 Identities=13% Similarity=0.290 Sum_probs=31.8
Q ss_pred EEEEeeceecCCceEEe-ccCC-ccccc-cccCCCccHHHHHHHHHHHHHHHHhcccceeeeecCeEEEecCCC
Q 024568 11 YLLEVHRILRPGGFWVL-SGPP-VNYEH-RWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLSD 81 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~-S~pP-v~~k~-~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~~aIwqKp~~ 81 (265)
+|-++-|+|+|||++++ .... -.... .-.++.-++++ +.++.+ =|+.+.-...+.++.|+..
T Consensus 116 ~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e-------l~~~~~--~~~~~~~~~~~~~~~~~~~ 180 (197)
T PRK11207 116 LIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE-------LRRYYE--GWEMVKYNEDVGELHRTDA 180 (197)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH-------HHHHhC--CCeEEEeeCCHHhhccccc
Confidence 45578899999999654 2110 00000 00012222332 333444 3877766566777777643
No 35
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=50.60 E-value=2.1 Score=39.37 Aligned_cols=56 Identities=25% Similarity=0.549 Sum_probs=35.2
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeeecC-----eEEEecCCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDD-----IAVWQKLSD 81 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~-----~aIwqKp~~ 81 (265)
+|.|..|||||||.+...----.. ++ -++..+..+++=.++..+... +..++|..+
T Consensus 140 fi~EA~RvLK~~G~L~IAEV~SRf-----------~~----~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 140 FIREANRVLKPGGILKIAEVKSRF-----------EN----VKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEEGGG------------S-----HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SS
T ss_pred HHHHHHheeccCcEEEEEEecccC-----------cC----HHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCc
Confidence 578999999999998774321111 11 234666677888888876532 467777763
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=50.58 E-value=5 Score=36.59 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.6
Q ss_pred EEEEeeceecCCceEEeccCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pP 31 (265)
+|-|+-|+|+|||+||.+.+.
T Consensus 138 ~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 138 LFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHcCCCcEEEEEEec
Confidence 344667999999999998653
No 37
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=50.50 E-value=7.7 Score=35.30 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCceeeeccCCcccchhhhccC--CCceEEEeeccCC-------CCcccceecccccccccc
Q 024568 162 KWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVID--DPLWVMNVVSSYA-------ANTLAVVYDRGLIGTYHD 232 (265)
Q Consensus 162 ~W~~~V~~Y~~~l~~i~~~~iRNVMDMnAg~GGFAAAL~~--~pvWVMNVVP~~~-------~nTL~vIydRGLIG~yHD 232 (265)
.|=++.++-..++-.+...+|+++++..|+-|-|.+.|.. +.+-++-++|.-- .+.=.|-+.++-+-
T Consensus 24 ~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp---- 99 (201)
T PF05401_consen 24 SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVP---- 99 (201)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TT----
T ss_pred CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCC----
Confidence 4555544332222135778999999999999999999987 5678888877531 11112444444331
Q ss_pred cccccCCCCCcccceecccccccc
Q 024568 233 WCEAFSTYPRTYDLLHLDGLFTAE 256 (265)
Q Consensus 233 WCEaFsTYPRTYDLlHA~~lfS~~ 256 (265)
+ |. -+.+|||||.+.+|--.
T Consensus 100 --~-~~-P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 100 --E-FW-PEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp --T-----SS-EEEEEEES-GGGS
T ss_pred --C-CC-CCCCeeEEEEehHhHcC
Confidence 1 11 24999999999887643
No 38
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=50.28 E-value=5.7 Score=34.11 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=32.5
Q ss_pred ccccccCCCccccccchhhHHHHHHHHHhhcCCCC-CCCceeeeccCCcccchhhhccCC
Q 024568 144 RISDIHGGSASAFKHDDSKWNVRVKHYKKLLPALG-TDKIRNVMDMNTLYGGFAAAVIDD 202 (265)
Q Consensus 144 rl~~i~g~s~e~F~~Dt~~W~~~V~~Y~~~l~~i~-~~~iRNVMDMnAg~GGFAAAL~~~ 202 (265)
+|+++--.....|....++=..++......+.... ...-.+|+|+.||-|.|+..|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~ 66 (224)
T TIGR01983 7 ALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL 66 (224)
T ss_pred HHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc
Confidence 45543233334455555543445555544432110 112347999999999998877653
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=50.09 E-value=10 Score=32.85 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=13.9
Q ss_pred EeeceecCCceEEeccC
Q 024568 14 EVHRILRPGGFWVLSGP 30 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~p 30 (265)
++.|+|+|||.++..-.
T Consensus 127 ~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 127 LTLNLLKVGGYFLAYKG 143 (181)
T ss_pred HHHHhcCCCCEEEEEcC
Confidence 45899999999997644
No 40
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=50.00 E-value=9.3 Score=34.12 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred CceeeeccCCcccchhhhccCC-CceEEEeeccCC-CCcccceecccccccccccccccCCCCCcccceeccccccc
Q 024568 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTA 255 (265)
Q Consensus 181 ~iRNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIydRGLIG~yHDWCEaFsTYPRTYDLlHA~~lfS~ 255 (265)
.-..|+|..||-|.++.+|... |- ..|+=+|- ++.|...-++++ -..+.--+.+. ...+||+|+++.+|-.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhhh
Confidence 3467999999999999988764 32 13444444 555555555553 11111122231 2368999999887754
No 41
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=49.77 E-value=8.9 Score=36.33 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=16.1
Q ss_pred EeeceecCCceEEeccCCc
Q 024568 14 EVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~pPv 32 (265)
.+.++|+|||++|+||=-.
T Consensus 244 ~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 244 DIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HCHHHEEEEEEEEEEEEEG
T ss_pred HHHHhhCCCCEEEEccccH
Confidence 3678999999999999854
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=49.36 E-value=5.2 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=17.5
Q ss_pred EEEEeeceecCCceEEeccCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pP 31 (265)
+|-|+-|+|||||.++++...
T Consensus 165 ~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred HHHHHHHHcCCCcEEEEEEee
Confidence 456888999999999998754
No 43
>PRK04266 fibrillarin; Provisional
Probab=48.91 E-value=4 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.4
Q ss_pred EEEeeceecCCceEEec
Q 024568 12 LLEVHRILRPGGFWVLS 28 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S 28 (265)
|-|+-|+|+|||++|.+
T Consensus 159 L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 159 IDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 55889999999999997
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=48.76 E-value=19 Score=30.51 Aligned_cols=40 Identities=20% Similarity=0.044 Sum_probs=27.5
Q ss_pred EEeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeee
Q 024568 13 LEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAK 69 (265)
Q Consensus 13 lEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~ 69 (265)
-++-|+|+|||+++++.... + +.+++.++.+...++.+..
T Consensus 115 ~~~~~~Lk~gG~lv~~~~~~-------------~----~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 115 DWSLAHLHPGGRLVLTFILL-------------E----NLHSALAHLEKCGVSELDC 154 (187)
T ss_pred HHHHHhcCCCeEEEEEEecH-------------h----hHHHHHHHHHHCCCCcceE
Confidence 35678999999999976532 1 1344667788888876643
No 45
>PRK07402 precorrin-6B methylase; Provisional
Probab=47.73 E-value=12 Score=32.09 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.9
Q ss_pred EEEeeceecCCceEEeccCC
Q 024568 12 LLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pP 31 (265)
|-++.|+|+|||+|+...+-
T Consensus 125 l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 125 LQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHhcCCCeEEEEEeec
Confidence 45778999999999999863
No 46
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=47.71 E-value=3.6 Score=36.35 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.0
Q ss_pred EEEEEeeceecCCceEEeccC
Q 024568 10 IYLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 10 ~~LlEvdRvLRPGGyfv~S~p 30 (265)
.+|-|+-|+|+|||.|+.+-+
T Consensus 142 ~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 142 ALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred HHHHHHHHhcCCCeEEEEeec
Confidence 456788999999999999965
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=46.53 E-value=9.9 Score=36.93 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=41.0
Q ss_pred eeeeccCCcccchhhhccCC-CceEEEeeccCC-CCcccceecc--cccccccccccccCCCCCcccceeccccccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR--GLIGTYHDWCEAFSTYPRTYDLLHLDGLFTA 255 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIydR--GLIG~yHDWCEaFsTYPRTYDLlHA~~lfS~ 255 (265)
..|+|+.||.|++|..|... .. .|+=++- +..+...-+| |+ ++ +=-+..+...+-+||+|.+.++|..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEH 240 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhh
Confidence 47999999999999888753 32 4555554 4555544443 22 11 1011112223678999998887754
No 48
>PF14881 Tubulin_3: Tubulin domain
Probab=46.17 E-value=11 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.681 Sum_probs=24.8
Q ss_pred ceeeeccCCcccchhhhcc--------CCCc-eEEEeeccCC
Q 024568 182 IRNVMDMNTLYGGFAAAVI--------DDPL-WVMNVVSSYA 214 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~--------~~pv-WVMNVVP~~~ 214 (265)
+.=+.|+..|+||||+.++ +.++ |+.++-+...
T Consensus 77 fQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~ 118 (180)
T PF14881_consen 77 FQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSS 118 (180)
T ss_pred eEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCccc
Confidence 4448899999999999997 3564 8887755443
No 49
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=46.11 E-value=14 Score=25.63 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=36.8
Q ss_pred eeeccCCcccchhhhccCCCceEEEeeccCC-CCccccee---ccc---ccccccccccccCC-CCCcccceeccccccc
Q 024568 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY---DRG---LIGTYHDWCEAFST-YPRTYDLLHLDGLFTA 255 (265)
Q Consensus 184 NVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIy---dRG---LIG~yHDWCEaFsT-YPRTYDLlHA~~lfS~ 255 (265)
.|+|..||.|+++..+...+. ..++-.+. ++-+...- ..+ .+=.++.=.+.+.. -+.+||++.+++.|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 378999999999988877332 23333332 11111100 011 12222222222222 3578999999988864
No 50
>PRK06202 hypothetical protein; Provisional
Probab=46.09 E-value=11 Score=33.16 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCceeeeccCCcccchhhhccC---CCceEEEeeccCC-CCcccceecccc---cccccccccccCCCCCcccceecccc
Q 024568 180 DKIRNVMDMNTLYGGFAAAVID---DPLWVMNVVSSYA-ANTLAVVYDRGL---IGTYHDWCEAFSTYPRTYDLLHLDGL 252 (265)
Q Consensus 180 ~~iRNVMDMnAg~GGFAAAL~~---~pvWVMNVVP~~~-~nTL~vIydRGL---IG~yHDWCEaFsTYPRTYDLlHA~~l 252 (265)
..-..|+|..||.|+++.+|.. ..-...+|+-+|- ++-|...-++.- +-...-=++.++.-+.+||+|-++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 3456799999999999888763 1112246777776 555555544311 11111113444444589999999988
Q ss_pred cccc
Q 024568 253 FTAE 256 (265)
Q Consensus 253 fS~~ 256 (265)
|...
T Consensus 139 lhh~ 142 (232)
T PRK06202 139 LHHL 142 (232)
T ss_pred eecC
Confidence 7654
No 51
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=44.92 E-value=9.8 Score=36.46 Aligned_cols=17 Identities=47% Similarity=0.995 Sum_probs=14.5
Q ss_pred EeeceecCCceEEeccC
Q 024568 14 EVHRILRPGGFWVLSGP 30 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~p 30 (265)
++-|+|+|||++|+||=
T Consensus 248 ~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 248 DIKRLLKPGGRLILSGI 264 (300)
T ss_pred HHHHHcCCCceEEEEee
Confidence 35688999999999993
No 52
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=44.58 E-value=4.7 Score=37.23 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=16.4
Q ss_pred EEEEeeceecCCceEEe--ccCCc
Q 024568 11 YLLEVHRILRPGGFWVL--SGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~--S~pPv 32 (265)
.|-|+-|||+|||-++. .++|.
T Consensus 138 aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 138 ALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCCC
Confidence 46799999999997665 34443
No 53
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=44.52 E-value=24 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=17.4
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-++=++|||||++|||.-.+
T Consensus 181 iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHhcCCCCEEEEEeCCC
Confidence 3445567899999999998766
No 54
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=43.86 E-value=3.7 Score=39.44 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=35.3
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeeecC-----eEEEecCCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDD-----IAVWQKLSD 81 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~-----~aIwqKp~~ 81 (265)
++.|.+|||+|||-+-..----.+ .|.+ ...+-.+.|=.+...+... ...+||+.-
T Consensus 246 f~kEa~RiLk~gG~l~IAEv~SRf-----------~dv~----~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAEVKSRF-----------SDVK----GFVRALTKLGFDVKHKDVSNKYFTLFEFKKTPK 306 (325)
T ss_pred HHHHHHHHhccCceEEEEehhhhc-----------ccHH----HHHHHHHHcCCeeeehhhhcceEEEEEEecCCc
Confidence 467999999999987542211101 1222 2556667788877766654 477888764
No 55
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=43.04 E-value=9.7 Score=33.00 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=40.0
Q ss_pred eeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccc----eecccc---cccccccccccCCCCCcccceecccccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAV----VYDRGL---IGTYHDWCEAFSTYPRTYDLLHLDGLFT 254 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~v----IydRGL---IG~yHDWCEaFsTYPRTYDLlHA~~lfS 254 (265)
-.|+|..||.|.++..|.+.. + +|+-+|. ++-+.. +-.+|+ -..-.|..+ + +.+.+||+|-+.++|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 469999999999999998753 2 4444444 222221 112233 122234432 2 3467899999887763
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=42.59 E-value=9 Score=35.60 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCCCceeeeccCCcccchhhhccCC-CceEEEeeccCC-CCcccce----ecccccccccccccccCCCCCcccceecc
Q 024568 177 LGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVV----YDRGLIGTYHDWCEAFSTYPRTYDLLHLD 250 (265)
Q Consensus 177 i~~~~iRNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vI----ydRGLIG~yHDWCEaFsTYPRTYDLlHA~ 250 (265)
|..| ..|+|..||.||||-.+... .+ +|+=++- +++...+ =++||-+...=-|.-|...|=+||-|=+-
T Consensus 60 l~~G--~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi 134 (273)
T PF02353_consen 60 LKPG--DRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSI 134 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEE
T ss_pred CCCC--CEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEE
Confidence 5555 48999999999999998876 65 5555544 5565543 47787543332223333344499998887
Q ss_pred cccccc
Q 024568 251 GLFTAE 256 (265)
Q Consensus 251 ~lfS~~ 256 (265)
++|-..
T Consensus 135 ~~~Ehv 140 (273)
T PF02353_consen 135 EMFEHV 140 (273)
T ss_dssp SEGGGT
T ss_pred echhhc
Confidence 777654
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=42.28 E-value=13 Score=31.96 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=38.6
Q ss_pred ceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecc----cccccccccccccCCCCCcccceecccccc
Q 024568 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYPRTYDLLHLDGLFT 254 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydR----GLIG~yHDWCEaFsTYPRTYDLlHA~~lfS 254 (265)
-.+|+|..||-|.|+.+|.+... .|+=++. ++-+...-++ |+-...+--...+..-+.+||+|-+.++|.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 46899999999999999876532 2444443 3333322221 110111111111333347899998877763
No 58
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=42.03 E-value=8.2 Score=33.40 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=39.6
Q ss_pred eeeeccCCcccchhhhccCCCceEEEeeccCC-CCccccee----ccccc--ccccccccccCCCCCcccceecccccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY----DRGLI--GTYHDWCEAFSTYPRTYDLLHLDGLFT 254 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIy----dRGLI--G~yHDWCEaFsTYPRTYDLlHA~~lfS 254 (265)
..|+|+.||.|.++..|.... ..|+-+|. ++.+..+- +.|+- +.-.|- +.+ .++-+||+|-+..+|.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFM 105 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEecccc
Confidence 479999999999998887653 25666665 33333221 22331 111121 122 2356799998887764
No 59
>PRK11524 putative methyltransferase; Provisional
Probab=40.43 E-value=18 Score=33.30 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.6
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
.|-|+-|||+|||.+++...
T Consensus 62 ~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 62 WIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred HHHHHHHHhCCCcEEEEEcC
Confidence 45788999999999998643
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=39.80 E-value=3.7 Score=36.66 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.7
Q ss_pred cEEEEEeeceecCCceEEeccC
Q 024568 9 GIYLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 9 G~~LlEvdRvLRPGGyfv~S~p 30 (265)
..+|-|+-|+|+|||+++.+-|
T Consensus 106 ~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 106 ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHHHHhCCCCcEEEEEcC
Confidence 3456678899999999999754
No 61
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=38.91 E-value=16 Score=36.22 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=15.2
Q ss_pred EeeceecCCceEEeccCCc
Q 024568 14 EVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~pPv 32 (265)
-|=+.||||||||=+-|-.
T Consensus 222 Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 222 NVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHhhcCCCcEEEEecCcH
Confidence 3456799999999999843
No 62
>PRK08317 hypothetical protein; Provisional
Probab=38.77 E-value=9.6 Score=32.25 Aligned_cols=19 Identities=47% Similarity=0.763 Sum_probs=16.0
Q ss_pred EEEeeceecCCceEEeccC
Q 024568 12 LLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~p 30 (265)
|-++-|+|+|||++++..+
T Consensus 107 l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 107 LAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHhcCCcEEEEEec
Confidence 4467799999999999875
No 63
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=38.44 E-value=8.1 Score=32.87 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.3
Q ss_pred eeeeccCCcccchhhhccCC
Q 024568 183 RNVMDMNTLYGGFAAAVIDD 202 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~ 202 (265)
..|+|..||-|.|...|...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~ 55 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKR 55 (240)
T ss_pred CeEEEECCCccHHHHHHHHh
Confidence 56999999999999888653
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=38.41 E-value=7.2 Score=32.87 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.9
Q ss_pred EEEEeeceecCCceEEeccCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pP 31 (265)
+|-|+.|+|+|||.+++..+.
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEec
Confidence 578899999999999997653
No 65
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=37.20 E-value=14 Score=33.60 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.3
Q ss_pred eeeeccCCcccchhhhccC
Q 024568 183 RNVMDMNTLYGGFAAAVID 201 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~ 201 (265)
..|+|..||.|+++..|..
T Consensus 54 ~~VLDiGcG~G~~a~~la~ 72 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINE 72 (263)
T ss_pred CEEEEEcCCCChhhHHHHh
Confidence 4699999999999888764
No 66
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=36.95 E-value=8.1 Score=36.80 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=17.7
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
.|.|+-|+|||||.+|++...+
T Consensus 207 ~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHhcCCCCEEEEEEEEe
Confidence 4668889999999999975443
No 67
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=36.82 E-value=6.6 Score=34.08 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.8
Q ss_pred EEEeeceecCCceEEecc
Q 024568 12 LLEVHRILRPGGFWVLSG 29 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~ 29 (265)
|-|+-|+|+|||.++..-
T Consensus 134 l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 134 LREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHcCcCeEEEEEE
Confidence 456789999999999853
No 68
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=36.47 E-value=6.8 Score=35.09 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.7
Q ss_pred EEEEeeceecCCceEEecc
Q 024568 11 YLLEVHRILRPGGFWVLSG 29 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~ 29 (265)
+|-|+-|+|+|||.|+++.
T Consensus 146 ~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 146 LLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 5668899999999999985
No 69
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=36.28 E-value=22 Score=31.13 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCceeeeccCCcccchhhhccC-CCceEEEeeccCC-CCcccce----ecccc--ccccccc
Q 024568 162 KWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVID-DPLWVMNVVSSYA-ANTLAVV----YDRGL--IGTYHDW 233 (265)
Q Consensus 162 ~W~~~V~~Y~~~l~~i~~~~iRNVMDMnAg~GGFAAAL~~-~pvWVMNVVP~~~-~nTL~vI----ydRGL--IG~yHDW 233 (265)
.|++++-.=..+.+.+.. =..|+|+.||.|.++.++.. .|- ..|+-+|. +.-+..+ =+.|+ |-.++.-
T Consensus 28 ~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 28 LWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 888887422222222332 24699999999998887753 232 25666655 2222111 11222 3344444
Q ss_pred ccccCCCCCcccceeccc
Q 024568 234 CEAFSTYPRTYDLLHLDG 251 (265)
Q Consensus 234 CEaFsTYPRTYDLlHA~~ 251 (265)
.+.+.. ..+||+|-++.
T Consensus 104 ~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 104 AEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred HhhCCC-CCCccEEEEcc
Confidence 554544 67999999865
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=36.27 E-value=23 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=0.0
Q ss_pred EeeceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHH
Q 024568 14 EVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDL 58 (265)
Q Consensus 14 EvdRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l 58 (265)
++-|+|+|||.+|++.+ +.+.+++....++++
T Consensus 130 ~~~~~LkpgG~lv~~~~-------------~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 130 ASWEIIKKGGRIVIDAI-------------LLETVNNALSALENI 161 (198)
T ss_pred HHHHHcCCCcEEEEEee-------------cHHHHHHHHHHHHHc
No 71
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=35.33 E-value=42 Score=31.77 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.4
Q ss_pred eeeeccCCcccchhhhccCC
Q 024568 183 RNVMDMNTLYGGFAAAVIDD 202 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~ 202 (265)
+.|+|+.||.|.|+..|+..
T Consensus 124 ~~VLDIGCG~G~~~~~la~~ 143 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA 143 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc
Confidence 57999999999999888663
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=35.14 E-value=39 Score=33.14 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.7
Q ss_pred EEEeeceecCCceEEeccCCc
Q 024568 12 LLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv 32 (265)
|-++=|+|||||++|+|.--+
T Consensus 367 L~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 367 LESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 445568999999999987666
No 73
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=35.03 E-value=8.7 Score=33.92 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.4
Q ss_pred EEEEeeceecCCceEEec
Q 024568 11 YLLEVHRILRPGGFWVLS 28 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S 28 (265)
.|-|+-|+|+|||.||..
T Consensus 147 ~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 456788999999999984
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=34.93 E-value=34 Score=33.43 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.1
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-+.=|+|||||.+|+|.--+
T Consensus 350 lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCC
Confidence 4455678999999999998877
No 75
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=34.85 E-value=12 Score=35.66 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=0.0
Q ss_pred EeeceecCCceEEec
Q 024568 14 EVHRILRPGGFWVLS 28 (265)
Q Consensus 14 EvdRvLRPGGyfv~S 28 (265)
|+-|+|+|||.++++
T Consensus 220 ~l~r~LkPGG~liis 234 (322)
T PLN02396 220 SLSALTIPNGATVLS 234 (322)
T ss_pred HHHHHcCCCcEEEEE
No 76
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=34.84 E-value=7.7 Score=37.69 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=16.3
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
+|-|+.|+|+|||+++++..
T Consensus 249 ~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 249 YFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHcCCCcEEEEEEc
Confidence 45677899999999999753
No 77
>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain. Bacterial DNA topoisomerase I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase alpha subunit
Probab=34.73 E-value=13 Score=34.42 Aligned_cols=17 Identities=53% Similarity=1.013 Sum_probs=12.9
Q ss_pred CcccceecccccccccccccccCCCCCc
Q 024568 216 NTLAVVYDRGLIGTYHDWCEAFSTYPRT 243 (265)
Q Consensus 216 nTL~vIydRGLIG~yHDWCEaFsTYPRT 243 (265)
+..+=.||.||| |||||
T Consensus 35 ~iaQ~LYe~g~i-----------TYPRT 51 (259)
T smart00437 35 QIAQKLYEKGLI-----------TYPRT 51 (259)
T ss_pred HHHHHHHhCCee-----------EecCC
Confidence 344557898888 89998
No 78
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=34.51 E-value=16 Score=33.74 Aligned_cols=21 Identities=38% Similarity=0.866 Sum_probs=17.6
Q ss_pred EEEEEeeceecCCceEEeccC
Q 024568 10 IYLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 10 ~~LlEvdRvLRPGGyfv~S~p 30 (265)
+||=-|+++|+|||-||.++=
T Consensus 162 ~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eehhhHhhccCCCcEEEEEec
Confidence 456668899999999999876
No 79
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=34.12 E-value=40 Score=33.24 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=35.4
Q ss_pred eceecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeee
Q 024568 16 HRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKK 70 (265)
Q Consensus 16 dRvLRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~ 70 (265)
-.+|.|||+||=-||-.|-=....|- ..+-.++=-.+.+..+++.+=|+.+.++
T Consensus 283 ~~iLk~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 283 YKILKPGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHhccCCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 35799999999999977332211111 1111222235668889999999999887
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=33.46 E-value=22 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-|+-|+|+|||.++++....
T Consensus 114 ~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 114 FLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHhCCCCEEEEEeCCH
Confidence 4567899999999999887643
No 81
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=32.86 E-value=14 Score=33.05 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=15.7
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
+|-|+-|+|+|||++++.-.
T Consensus 131 ~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 131 VLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHcCCCeEEEEEEE
Confidence 35577899999999987533
No 82
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=32.44 E-value=8.9 Score=36.28 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
+|.|+-|+|+|||.+|++..
T Consensus 208 ~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 208 HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHhcCCCcEEEEEEE
Confidence 46688899999999999753
No 83
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=11 Score=35.00 Aligned_cols=15 Identities=40% Similarity=1.019 Sum_probs=11.8
Q ss_pred EeeceecCC-ceEEec
Q 024568 14 EVHRILRPG-GFWVLS 28 (265)
Q Consensus 14 EvdRvLRPG-Gyfv~S 28 (265)
+|||+|||| -||=|.
T Consensus 39 qIeRllrpgstyfnLN 54 (250)
T KOG1150|consen 39 QIERLLRPGSTYFNLN 54 (250)
T ss_pred HHHHHhcCCccccccC
Confidence 689999999 566553
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=31.66 E-value=15 Score=33.72 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=39.5
Q ss_pred eeeccCCcccchhhhccCCCceEEEeeccCC-CCcccce----ecccccccccccccccCC--CCCcccceecccccc
Q 024568 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV----YDRGLIGTYHDWCEAFST--YPRTYDLLHLDGLFT 254 (265)
Q Consensus 184 NVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vI----ydRGLIG~yHDWCEaFsT--YPRTYDLlHA~~lfS 254 (265)
+|+|..||.|.++..|..... .|+=+|. +..+..+ -+.|+ . .+--+.-+.. .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhh
Confidence 799999999999998877542 5555555 3333321 23344 1 1111111222 268899999887765
No 85
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=31.43 E-value=26 Score=31.34 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.0
Q ss_pred eeeeccCCcccchhhhccC
Q 024568 183 RNVMDMNTLYGGFAAAVID 201 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~ 201 (265)
..|+||-||+|.|+-.+++
T Consensus 103 e~VlD~faGIG~f~l~~ak 121 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAK 121 (200)
T ss_dssp -EEEETT-TTTTTHHHHHH
T ss_pred eEEEEccCCccHHHHHHhh
Confidence 4799999999999877765
No 86
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA and then rejoin the broken phosphodiester backbone. Proposed catalytic mechanism of single stranded DNA cleavage is by phosphoryl transfer through a tyrosine nucleophile using acid/base catalysis. Tyr is activated by a nearby group (not yet identified) acting as a general base for nucleophilic attack on the 5' phosphate of the scissile bond. Arg and Lys stabilize the pentavalent transition state. Glu then acts as a proton donor for the leaving 3'-oxygen, upon cleavage of the scissile strand.
Probab=31.04 E-value=17 Score=35.17 Aligned_cols=17 Identities=53% Similarity=0.948 Sum_probs=13.2
Q ss_pred CcccceecccccccccccccccCCCCCc
Q 024568 216 NTLAVVYDRGLIGTYHDWCEAFSTYPRT 243 (265)
Q Consensus 216 nTL~vIydRGLIG~yHDWCEaFsTYPRT 243 (265)
+.++=.||.||| |||||
T Consensus 109 ~iaQ~LYe~glI-----------SYPRT 125 (381)
T cd00186 109 QIAQKLYEAGLI-----------TYPRT 125 (381)
T ss_pred HHHHHHHcCCee-----------eecCC
Confidence 345667998888 89998
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.51 E-value=66 Score=27.91 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=15.1
Q ss_pred EEEeeceecCCceEEeccC
Q 024568 12 LLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~p 30 (265)
+-++-|+|+|||.+++...
T Consensus 200 i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 200 IAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred HHHHHHhcccCCEEEEEEC
Confidence 4467789999999998643
No 88
>PLN02244 tocopherol O-methyltransferase
Probab=29.20 E-value=28 Score=32.95 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=38.4
Q ss_pred CceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccce----ecccccc---c-ccccccccCCCC-Ccccceecc
Q 024568 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV----YDRGLIG---T-YHDWCEAFSTYP-RTYDLLHLD 250 (265)
Q Consensus 181 ~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vI----ydRGLIG---~-yHDWCEaFsTYP-RTYDLlHA~ 250 (265)
.-..|+|+.||.|+++..|...- -.+|+=++- ++.+... -++|+.. . -.|-.+ + .+| .+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~-~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN-Q-PFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc-C-CCCCCCccEEEEC
Confidence 34679999999999998887641 123333333 2222211 1223311 1 113222 1 244 799999986
Q ss_pred ccccc
Q 024568 251 GLFTA 255 (265)
Q Consensus 251 ~lfS~ 255 (265)
..+..
T Consensus 194 ~~~~h 198 (340)
T PLN02244 194 ESGEH 198 (340)
T ss_pred Cchhc
Confidence 65543
No 89
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.26 E-value=15 Score=33.03 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=20.9
Q ss_pred EEEeeceecCCceEEeccCCccccc
Q 024568 12 LLEVHRILRPGGFWVLSGPPVNYEH 36 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv~~k~ 36 (265)
|.|--|+|||||+.-.+-|-.++.+
T Consensus 69 lkechr~Lrp~G~LriAvPdl~f~~ 93 (185)
T COG4627 69 LKECHRFLRPGGKLRIAVPDLKFLD 93 (185)
T ss_pred HHHHHHHhCcCcEEEEEcCCcchhH
Confidence 5567899999999999999877654
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=28.19 E-value=14 Score=34.75 Aligned_cols=64 Identities=28% Similarity=0.313 Sum_probs=38.8
Q ss_pred eeeeccCCcccchhhhccCC-CceEEEeeccCC-CCcccceecc----cc---cccc-cccccccCCCCCcccceecc
Q 024568 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GL---IGTY-HDWCEAFSTYPRTYDLLHLD 250 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIydR----GL---IG~y-HDWCEaFsTYPRTYDLlHA~ 250 (265)
..|+|+.||-|.++.+|... |. .+|+-++- +..|.+.-.. |+ |-++ .|.-+.++ +.+||+|-++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEEC
Confidence 47999999999999998753 43 34555655 4444433222 33 2222 24444332 3689999886
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=28.09 E-value=20 Score=33.12 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=36.3
Q ss_pred eeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecc----cccccccccccccCCC-CCcccceecccccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTY-PRTYDLLHLDGLFT 254 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydR----GLIG~yHDWCEaFsTY-PRTYDLlHA~~lfS 254 (265)
..|+|+.||-|.++.++.....- .|+=+|- +..+...-++ |+-...++-+...... +..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 57999999999988776654321 3444443 2222222221 1111111222212222 46899999976543
No 92
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=27.61 E-value=16 Score=35.03 Aligned_cols=16 Identities=38% Similarity=1.014 Sum_probs=14.1
Q ss_pred eeceecCCceEEeccC
Q 024568 15 VHRILRPGGFWVLSGP 30 (265)
Q Consensus 15 vdRvLRPGGyfv~S~p 30 (265)
|-..||||||||-+-|
T Consensus 172 vs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 172 VSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHTEEEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEEec
Confidence 5578999999999988
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=27.51 E-value=22 Score=30.79 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.0
Q ss_pred eeeeccCCcccchhhhccC
Q 024568 183 RNVMDMNTLYGGFAAAVID 201 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~ 201 (265)
..|+|..||.|.+++.|..
T Consensus 80 ~~VLeiG~GsG~~t~~la~ 98 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAH 98 (212)
T ss_pred CEEEEECCCccHHHHHHHH
Confidence 4799999999999886654
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=27.50 E-value=19 Score=35.12 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.9
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
+|-|+-|+|+|||.++++-+
T Consensus 351 ~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 351 LFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 45688899999999999865
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=27.25 E-value=12 Score=34.35 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=13.5
Q ss_pred EEEEeeceecCCceEEe
Q 024568 11 YLLEVHRILRPGGFWVL 27 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~ 27 (265)
+|-++.|+|+|||++++
T Consensus 205 ~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 205 IIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 35577899999999665
No 96
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=27.05 E-value=44 Score=32.83 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=32.1
Q ss_pred ecCCceEEeccCCccccccccCCCccHHHHHHHHHHHHHHHHhcccceeeeecC
Q 024568 19 LRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDD 72 (265)
Q Consensus 19 LRPGGyfv~S~pPv~~k~~~~~~~~~~e~~~~~~~~~~~l~~~mCW~~va~~~~ 72 (265)
.|||||.-+.+|| ++.+++.|.-++ +...+|+... =|+.+++-++
T Consensus 164 FraGGyiQie~pp--h~v~y~Dfdi~~-eY~~DWdkf~------lf~~vs~v~e 208 (410)
T COG2871 164 FRAGGYIQIEAPP--HTVNYKDFDIPP-EYHEDWDKFN------LFRYVSKVDE 208 (410)
T ss_pred cCCCceEEEecCC--ccccccccCCCh-hHhcchhhhc------hheeeccccH
Confidence 5899999999999 577777788544 4566687643 3666666554
No 97
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=26.77 E-value=17 Score=31.57 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=39.4
Q ss_pred eeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecc----ccccccc--ccccccCCCCCcccceecccccccc
Q 024568 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYH--DWCEAFSTYPRTYDLLHLDGLFTAE 256 (265)
Q Consensus 184 NVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydR----GLIG~yH--DWCEaFsTYPRTYDLlHA~~lfS~~ 256 (265)
.|+|+.||-|.|+..|.+.. .+|+=++. ++.+...-+| |+-..++ |..+.....+-+||+|.++++|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 49999999999998887653 34555554 2333222221 2211222 2222111123689999998877654
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=26.74 E-value=25 Score=29.64 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.1
Q ss_pred ceeeeccCCcccchhhhccC
Q 024568 182 IRNVMDMNTLYGGFAAAVID 201 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~ 201 (265)
=.+|+|..||.|+++.++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~ 59 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAK 59 (223)
T ss_pred CCeEEEeCCCCChhHHHHHH
Confidence 35899999999999988764
No 99
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=26.58 E-value=30 Score=33.81 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.8
Q ss_pred EEEeeceecCCceEEeccCCc
Q 024568 12 LLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv 32 (265)
|-++=++|+|||++|+|.--+
T Consensus 355 L~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 355 LDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 445667899999999998655
No 100
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=26.57 E-value=33 Score=33.27 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=13.8
Q ss_pred ceecCCceEEeccCC
Q 024568 17 RILRPGGFWVLSGPP 31 (265)
Q Consensus 17 RvLRPGGyfv~S~pP 31 (265)
+.|.||||.||++.|
T Consensus 237 ~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 237 RALEPGGYLIYTGQP 251 (311)
T ss_pred HHhCCCcEEEEcCCC
Confidence 578899999999998
No 101
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=26.52 E-value=46 Score=27.90 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCCCceeeeccCCcccchhhhccCCCceEEEeeccCCC-C----cccceeccccc---ccccccccccCCCCCccccee
Q 024568 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAA-N----TLAVVYDRGLI---GTYHDWCEAFSTYPRTYDLLH 248 (265)
Q Consensus 177 i~~~~iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~~-n----TL~vIydRGLI---G~yHDWCEaFsTYPRTYDLlH 248 (265)
+..+.-.+|+|..|.=|||..+++........|+-+|-. . -...| +|=| .+...=.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455578999999999999999998876333344444431 1 11111 2222 011111222221126899999
Q ss_pred ccccccc
Q 024568 249 LDGLFTA 255 (265)
Q Consensus 249 A~~lfS~ 255 (265)
+|+-+..
T Consensus 97 ~D~~~~~ 103 (181)
T PF01728_consen 97 SDMAPNV 103 (181)
T ss_dssp E------
T ss_pred cccccCC
Confidence 9985553
No 102
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=26.48 E-value=20 Score=34.63 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.6
Q ss_pred EEEEeeceecCCceEEeccC
Q 024568 11 YLLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~p 30 (265)
.|-|+-|+|+|||.+++.++
T Consensus 197 ~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred HHHHHHHhcCCCcEEEEEEe
Confidence 34578899999999998765
No 103
>PF01131 Topoisom_bac: DNA topoisomerase; InterPro: IPR013497 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Type IA topoisomerases are comprised of four domains that together form a toroidal structure with a central hole large enough to accommodate single- and double-stranded DNA: an N-terminal alpha/beta Toprim domain, domain 2 and the C-terminal domain 4 are winged-helix domains, and domain 3 is a beta-barrel. Domains 1 (Toprim) and 3 form the active site of the enzyme, while the winged helix domains 2 and 4 form a single-strand DNA-binding groove [, ]. This entry represents the central portion of the enzyme, which covers domains 2 and 3 in topoisomerase type IA enzymes. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 1CYY_A 3PWT_A 1CY4_A 1CY9_A 1ECL_A 1CY7_A 1CY8_A 1CY6_A 1MW8_X 1CY0_A ....
Probab=26.27 E-value=25 Score=34.26 Aligned_cols=17 Identities=47% Similarity=1.023 Sum_probs=11.1
Q ss_pred Ccccceecc-cccccccccccccCCCCCc
Q 024568 216 NTLAVVYDR-GLIGTYHDWCEAFSTYPRT 243 (265)
Q Consensus 216 nTL~vIydR-GLIG~yHDWCEaFsTYPRT 243 (265)
+.++=.||+ ||| |||||
T Consensus 140 ~iaQ~LYE~~g~I-----------SYPRT 157 (403)
T PF01131_consen 140 DIAQKLYEKHGLI-----------SYPRT 157 (403)
T ss_dssp HHHHHHHHTTTSB-----------S-SS-
T ss_pred HHHHHHHhhhhee-----------eeecc
Confidence 445566886 888 89998
No 104
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=25.91 E-value=58 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHh-cccceeeeecCeEEEecCCCch
Q 024568 44 TIEEQRSDYKKLQDLLTS-MCFKLYAKKDDIAVWQKLSDSS 83 (265)
Q Consensus 44 ~~e~~~~~~~~~~~l~~~-mCW~~va~~~~~aIwqKp~~~~ 83 (265)
++++++.-+..++..+.. --|+++.+++++.||.++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~W~l~~~~~~i~Vy~r~~~~s 46 (207)
T cd08910 6 SEEQFREACAELQQPALDGAAWELLVESSGISIYRLLDEQS 46 (207)
T ss_pred CHHHHHHHHHHhcCCCCCCCCeEEEEecCCeEEEEeccCCC
Confidence 567777777777755444 5699999999999999965533
No 105
>PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain []. The other lobe, RNA polymerase Rpb2, domain 2, is nested within this domain.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H ....
Probab=25.81 E-value=29 Score=30.48 Aligned_cols=11 Identities=36% Similarity=1.295 Sum_probs=7.6
Q ss_pred CCceEEeccCC
Q 024568 21 PGGFWVLSGPP 31 (265)
Q Consensus 21 PGGyfv~S~pP 31 (265)
||||||..|-.
T Consensus 130 ~GGYFIInG~E 140 (203)
T PF04563_consen 130 PGGYFIINGSE 140 (203)
T ss_dssp --SSEEETTEE
T ss_pred CCCEEEECCCh
Confidence 79999998864
No 106
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.73 E-value=19 Score=34.50 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=37.1
Q ss_pred eeeccCCcccchhhhccCC-CceEEEeeccCCC-Ccccce----ecccccccccccccccCCCCCcccceecccccc
Q 024568 184 NVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYAA-NTLAVV----YDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFT 254 (265)
Q Consensus 184 NVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~~-nTL~vI----ydRGLIG~yHDWCEaFsTYPRTYDLlHA~~lfS 254 (265)
.|+|..||.|.++++|... |.- .|+-+|.. .-|... =..|+-+..+ +...++.-+.+||+|-++--|-
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH 272 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFH 272 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCcc
Confidence 5999999999999988764 421 12323321 111100 0112222222 2334444468999999986663
No 107
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=25.61 E-value=54 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=19.9
Q ss_pred cccccCcE-EEEEeeceecCCceEEeccCC
Q 024568 3 NIFVSGGI-YLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 3 ~w~~~dG~-~LlEvdRvLRPGGyfv~S~pP 31 (265)
|||.+|=+ ++--+=|+|+|||++|+--.|
T Consensus 182 NwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 182 NWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred ccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 45544432 222466899999999998887
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=25.54 E-value=69 Score=31.41 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=17.3
Q ss_pred EEEeeceecCCceEEeccCCc
Q 024568 12 LLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~pPv 32 (265)
|-++-|+|+|||.+|+|.--+
T Consensus 362 L~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 362 LESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHcCCCCEEEEEcCCC
Confidence 445668899999999998766
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=25.42 E-value=30 Score=28.52 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=41.2
Q ss_pred ceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccce---------ecccccccccccccccCCCCCcccceeccc
Q 024568 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV---------YDRGLIGTYHDWCEAFSTYPRTYDLLHLDG 251 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vI---------ydRGLIG~yHDWCEaFsTYPRTYDLlHA~~ 251 (265)
-..|+|+.||-|.++.+|.... -+|+=++. ++.+... -+||+.-.-+|+.+.|.. .+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3469999999999999988763 25555554 3444333 123344445666665432 3799986554
Q ss_pred cc
Q 024568 252 LF 253 (265)
Q Consensus 252 lf 253 (265)
-|
T Consensus 99 p~ 100 (188)
T PRK14968 99 PY 100 (188)
T ss_pred Cc
Confidence 33
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=24.61 E-value=25 Score=33.00 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=17.1
Q ss_pred EEEEeeceecCCceEEeccCC
Q 024568 11 YLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pP 31 (265)
+|-|+-|+|+|||++|+..|.
T Consensus 276 ~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 276 SLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred HHHHHHHHccCCcEEEEEEcC
Confidence 355667999999999998774
No 111
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=23.42 E-value=24 Score=32.85 Aligned_cols=18 Identities=39% Similarity=0.883 Sum_probs=14.8
Q ss_pred EEEEeeceecCCceEEec
Q 024568 11 YLLEVHRILRPGGFWVLS 28 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S 28 (265)
++-+++|+|+|||-+++.
T Consensus 148 ~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 148 FFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp HHHHHHHHSETTEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 455678999999999874
No 112
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=23.26 E-value=43 Score=24.96 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=32.9
Q ss_pred eccCCcccchhhhccCCCceEEEeeccCC-CCcccceecccccc--------cccccccccCCCC-Ccccceeccccccc
Q 024568 186 MDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIG--------TYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (265)
Q Consensus 186 MDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydRGLIG--------~yHDWCEaFsTYP-RTYDLlHA~~lfS~ 255 (265)
||..||-|.++.+|+..- --..++=+|- ++-|...-+| +.. .-.+--+.+...+ .+||+|.+.++|..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARER-LAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCC-HHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH-hhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 688999999999997752 2334444444 4555333332 111 1112223344444 59999999999986
Q ss_pred c
Q 024568 256 E 256 (265)
Q Consensus 256 ~ 256 (265)
.
T Consensus 79 l 79 (99)
T PF08242_consen 79 L 79 (99)
T ss_dssp -
T ss_pred h
Confidence 5
No 113
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=22.71 E-value=54 Score=29.83 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=42.0
Q ss_pred eeeeccCCcccchhhhccCC--CceEEEeeccCC-CCcccceeccc-------c--cccccccccccCCCC-Ccccceec
Q 024568 183 RNVMDMNTLYGGFAAAVIDD--PLWVMNVVSSYA-ANTLAVVYDRG-------L--IGTYHDWCEAFSTYP-RTYDLLHL 249 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~--pvWVMNVVP~~~-~nTL~vIydRG-------L--IG~yHDWCEaFsTYP-RTYDLlHA 249 (265)
..|+|..||-|.++..|... |-. +|+=+|- ++-|.+.-+|. . |-..+.-.|.+ ++| .+||+|.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 46999999999999887653 222 4555555 44455443331 1 11222234444 356 69999998
Q ss_pred cccccc
Q 024568 250 DGLFTA 255 (265)
Q Consensus 250 ~~lfS~ 255 (265)
+..+..
T Consensus 152 ~~~l~~ 157 (261)
T PLN02233 152 GYGLRN 157 (261)
T ss_pred eccccc
Confidence 766653
No 114
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=22.67 E-value=19 Score=32.25 Aligned_cols=19 Identities=32% Similarity=0.789 Sum_probs=16.6
Q ss_pred EEEeeceecCCceEEeccC
Q 024568 12 LLEVHRILRPGGFWVLSGP 30 (265)
Q Consensus 12 LlEvdRvLRPGGyfv~S~p 30 (265)
|+++-|||+|||-+.++-|
T Consensus 94 m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HHHHHHhhccCCeEEEEee
Confidence 5678899999999999866
No 115
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=22.29 E-value=23 Score=34.56 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=41.1
Q ss_pred ceeeeccCCcccchhhhccCCCceEEEeeccCC-CCcccceecc--cc---ccc-ccccccccCCCC-Ccccceeccccc
Q 024568 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR--GL---IGT-YHDWCEAFSTYP-RTYDLLHLDGLF 253 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~~pvWVMNVVP~~~-~nTL~vIydR--GL---IG~-yHDWCEaFsTYP-RTYDLlHA~~lf 253 (265)
-..|+|..||.|+++..|.+..- .+|+=+|- +..|.+.-.+ |+ +-. ..|..+. ++| .+||+|.+.+.|
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK--TYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC--CCCCCCEEEEEECCcc
Confidence 45799999999999888876431 14454444 3333332221 11 111 2343331 344 689999998777
Q ss_pred ccc
Q 024568 254 TAE 256 (265)
Q Consensus 254 S~~ 256 (265)
-..
T Consensus 343 ~h~ 345 (475)
T PLN02336 343 LHI 345 (475)
T ss_pred ccc
Confidence 543
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=21.77 E-value=24 Score=31.91 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=49.9
Q ss_pred eeeeccCCcccchhhhccCC-CceEEEeeccCC-CCcccceecccccccccccccccCCCC-Ccccceeccc
Q 024568 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDG 251 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~-~nTL~vIydRGLIG~yHDWCEaFsTYP-RTYDLlHA~~ 251 (265)
-.|||..||-|-+.+.|.+. .+= +.-++- +..+.-...||+-=+-+|-=+..+.|| .+||.+=.+.
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 35999999999999999874 342 233333 455666778998777788888899999 9999876543
No 117
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=21.77 E-value=37 Score=34.65 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=29.2
Q ss_pred ceeeeccCCcccchhhhccC--------C--CceEEEeeccCCCCccccee
Q 024568 182 IRNVMDMNTLYGGFAAAVID--------D--PLWVMNVVSSYAANTLAVVY 222 (265)
Q Consensus 182 iRNVMDMnAg~GGFAAAL~~--------~--pvWVMNVVP~~~~nTL~vIy 222 (265)
+.=+-||-.|+|||||+++. . +.|+-|-=|.+.+..-.-|+
T Consensus 207 Fq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls 257 (483)
T KOG2530|consen 207 FQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLS 257 (483)
T ss_pred eEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhH
Confidence 45588999999999999863 2 34999887776644333333
No 118
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=21.68 E-value=26 Score=30.79 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.2
Q ss_pred eeeeccCCcccchhhhccC
Q 024568 183 RNVMDMNTLYGGFAAAVID 201 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~ 201 (265)
..|+|+.||.|.+++.|..
T Consensus 78 ~~VLdIG~GsG~~t~~la~ 96 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAE 96 (212)
T ss_pred CEEEEECCcccHHHHHHHH
Confidence 4799999999999977654
No 119
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=21.40 E-value=1e+02 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=17.2
Q ss_pred cceeeeecCeEEEecCCCc
Q 024568 64 FKLYAKKDDIAVWQKLSDS 82 (265)
Q Consensus 64 W~~va~~~~~aIwqKp~~~ 82 (265)
|+++.+++++.||.|+...
T Consensus 25 W~~~~~~~gi~iy~r~~~~ 43 (222)
T cd08871 25 WKLKYNKNNVKVWTKNPEN 43 (222)
T ss_pred cEEEEcCCCeEEEEeeCCC
Confidence 9999999999999998754
No 120
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=21.30 E-value=1e+02 Score=23.26 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=22.1
Q ss_pred eeeeccCCcccchhhhccCC-CceEEEeeccCC
Q 024568 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA 214 (265)
Q Consensus 183 RNVMDMnAg~GGFAAAL~~~-pvWVMNVVP~~~ 214 (265)
..|+|..||.|.++..|... |- .+|+-++-
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~ 51 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIER 51 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcC
Confidence 48999999999999988763 32 34555554
No 121
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=20.91 E-value=32 Score=24.13 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=17.3
Q ss_pred EEEEEeeceecCCceEEeccCC
Q 024568 10 IYLLEVHRILRPGGFWVLSGPP 31 (265)
Q Consensus 10 ~~LlEvdRvLRPGGyfv~S~pP 31 (265)
..+.|+-|+|+|||.++.+..-
T Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 136 KALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred HHHHHHHHhcCCCcEEEEEecc
Confidence 3456788999999999987664
No 122
>PRK05776 DNA topoisomerase I; Provisional
Probab=20.76 E-value=35 Score=35.87 Aligned_cols=12 Identities=67% Similarity=1.220 Sum_probs=9.7
Q ss_pred eecccccccccccccccCCCCCc
Q 024568 221 VYDRGLIGTYHDWCEAFSTYPRT 243 (265)
Q Consensus 221 IydRGLIG~yHDWCEaFsTYPRT 243 (265)
.||.||| |||||
T Consensus 305 LYe~glI-----------SYPRT 316 (670)
T PRK05776 305 LYLDGLI-----------SYPRT 316 (670)
T ss_pred HHhcCce-----------ecCCC
Confidence 4777777 99998
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=20.74 E-value=97 Score=30.47 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=17.5
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 024568 11 YLLEVHRILRPGGFWVLSGPPV 32 (265)
Q Consensus 11 ~LlEvdRvLRPGGyfv~S~pPv 32 (265)
+|-++=|+|||||.+|+|.-.+
T Consensus 359 iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHhcCCCcEEEEEeCCC
Confidence 3445567899999999998766
Done!