Query 024570
Match_columns 265
No_of_seqs 189 out of 1080
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 100.0 1.2E-29 2.6E-34 219.2 25.6 218 30-260 2-233 (235)
2 KOG3385 V-SNARE [Intracellular 99.4 1.5E-12 3.3E-17 99.5 8.5 75 174-249 32-106 (118)
3 PF05739 SNARE: SNARE domain; 99.4 7.7E-12 1.7E-16 87.3 9.6 62 175-236 1-62 (63)
4 PF09177 Syntaxin-6_N: Syntaxi 99.3 4.4E-11 9.5E-16 90.9 10.0 88 34-121 1-97 (97)
5 KOG0811 SNARE protein PEP12/VA 99.1 1.2E-08 2.7E-13 90.4 21.1 96 169-264 171-268 (269)
6 cd00193 t_SNARE Soluble NSF (N 99.0 1.1E-09 2.3E-14 75.1 7.8 58 174-231 2-59 (60)
7 KOG0810 SNARE protein Syntaxin 99.0 1.2E-08 2.5E-13 92.0 16.6 70 173-242 201-270 (297)
8 KOG0812 SNARE protein SED5/Syn 99.0 8.8E-07 1.9E-11 78.1 26.8 242 1-244 1-293 (311)
9 smart00397 t_SNARE Helical reg 99.0 1.8E-09 4E-14 75.2 8.2 63 169-231 3-65 (66)
10 KOG0809 SNARE protein TLG2/Syn 98.9 3.9E-07 8.4E-12 80.7 19.7 203 35-248 58-288 (305)
11 COG5325 t-SNARE complex subuni 98.9 2.6E-08 5.7E-13 87.4 12.3 75 167-241 184-258 (283)
12 KOG3065 SNAP-25 (synaptosome-a 98.8 1.1E-08 2.3E-13 91.0 7.5 61 173-233 213-273 (273)
13 PF09753 Use1: Membrane fusion 98.6 1.4E-06 2.9E-11 77.3 14.2 85 175-263 164-248 (251)
14 COG5074 t-SNARE complex subuni 98.4 1.8E-06 3.9E-11 74.1 9.0 73 176-248 183-258 (280)
15 KOG1666 V-SNARE [Intracellular 98.0 0.0022 4.7E-08 54.8 19.8 86 178-264 135-220 (220)
16 KOG2678 Predicted membrane pro 97.8 0.0006 1.3E-08 58.4 12.7 79 175-255 152-230 (244)
17 PF03908 Sec20: Sec20; InterP 97.3 0.0088 1.9E-07 44.8 12.0 84 178-265 8-91 (92)
18 KOG0860 Synaptobrevin/VAMP-lik 97.2 0.0095 2.1E-07 46.2 11.1 57 205-263 56-115 (116)
19 KOG3251 Golgi SNAP receptor co 97.1 0.14 2.9E-06 44.1 18.4 78 178-255 129-206 (213)
20 PF00957 Synaptobrevin: Synapt 96.8 0.031 6.7E-07 41.4 10.8 54 178-231 3-59 (89)
21 KOG3894 SNARE protein Syntaxin 96.5 0.046 9.9E-07 49.4 11.6 72 172-243 226-297 (316)
22 KOG3208 SNARE protein GS28 [In 96.1 0.79 1.7E-05 39.6 19.9 58 178-235 149-206 (231)
23 KOG0810 SNARE protein Syntaxin 95.8 0.13 2.7E-06 46.8 11.0 81 171-255 206-286 (297)
24 PF12352 V-SNARE_C: Snare regi 95.5 0.36 7.8E-06 33.4 10.2 60 176-235 6-65 (66)
25 COG5325 t-SNARE complex subuni 95.2 0.49 1.1E-05 42.2 12.2 86 166-255 190-275 (283)
26 PF10779 XhlA: Haemolysin XhlA 94.6 0.68 1.5E-05 32.8 9.7 63 195-264 9-71 (71)
27 COG5074 t-SNARE complex subuni 94.5 0.6 1.3E-05 40.7 10.7 83 171-262 192-275 (280)
28 KOG0811 SNARE protein PEP12/VA 93.9 1.6 3.5E-05 39.1 12.7 94 165-260 174-267 (269)
29 KOG3202 SNARE protein TLG1/Syn 93.4 5.2 0.00011 35.2 20.4 88 164-255 145-232 (235)
30 PHA02819 hypothetical protein; 91.4 0.3 6.6E-06 34.4 3.6 25 240-264 44-68 (71)
31 PF07798 DUF1640: Protein of u 91.2 8 0.00017 32.3 14.2 54 196-255 117-170 (177)
32 PHA02844 putative transmembran 91.1 0.58 1.3E-05 33.3 4.8 25 240-264 46-70 (75)
33 KOG0812 SNARE protein SED5/Syn 90.9 6.5 0.00014 35.4 12.3 68 163-230 219-286 (311)
34 PF00957 Synaptobrevin: Synapt 90.3 3.8 8.3E-05 30.0 9.1 50 176-226 12-61 (89)
35 KOG0809 SNARE protein TLG2/Syn 90.2 3.3 7.1E-05 37.4 9.9 87 167-257 214-300 (305)
36 PHA03054 IMV membrane protein; 90.0 0.48 1E-05 33.4 3.6 24 241-264 47-70 (72)
37 PHA02650 hypothetical protein; 89.9 0.46 9.9E-06 34.3 3.5 24 241-264 48-71 (81)
38 PF01519 DUF16: Protein of unk 88.5 4 8.6E-05 31.1 7.9 50 175-224 50-99 (102)
39 COG4064 MtrG Tetrahydromethano 87.5 7.9 0.00017 27.3 8.2 26 199-224 15-40 (75)
40 KOG0860 Synaptobrevin/VAMP-lik 87.1 11 0.00024 29.4 9.7 50 175-225 37-86 (116)
41 PRK10884 SH3 domain-containing 86.3 14 0.0003 31.8 11.2 40 192-231 118-157 (206)
42 TIGR01149 mtrG N5-methyltetrah 85.8 6.4 0.00014 27.7 7.1 25 200-224 13-37 (70)
43 PF12575 DUF3753: Protein of u 85.4 1.2 2.6E-05 31.7 3.4 23 242-264 48-70 (72)
44 PF09753 Use1: Membrane fusion 85.4 9.3 0.0002 33.7 9.9 26 201-226 197-222 (251)
45 PHA02692 hypothetical protein; 83.8 2.2 4.8E-05 30.1 4.1 24 241-264 44-68 (70)
46 PF11166 DUF2951: Protein of u 82.6 18 0.00039 27.1 10.7 30 167-196 14-43 (98)
47 PHA02975 hypothetical protein; 82.5 2.2 4.8E-05 29.9 3.6 24 241-264 43-66 (69)
48 PF05531 NPV_P10: Nucleopolyhe 81.9 11 0.00025 27.0 7.2 57 167-223 7-66 (75)
49 PRK14762 membrane protein; Pro 81.6 2.5 5.4E-05 23.6 2.9 20 244-264 5-24 (27)
50 PF11395 DUF2873: Protein of u 81.5 2.8 6E-05 25.8 3.4 23 241-263 10-32 (43)
51 PF04210 MtrG: Tetrahydrometha 81.0 13 0.00028 26.2 7.1 25 200-224 13-37 (70)
52 PRK01026 tetrahydromethanopter 80.7 16 0.00035 26.3 7.6 25 200-224 16-40 (77)
53 PF12606 RELT: Tumour necrosis 79.9 2.4 5.2E-05 28.1 3.0 21 245-265 6-26 (50)
54 PF00804 Syntaxin: Syntaxin; 79.4 22 0.00047 25.9 10.9 87 34-120 3-102 (103)
55 PF05478 Prominin: Prominin; 78.6 15 0.00033 38.0 9.9 19 72-90 250-268 (806)
56 PF03904 DUF334: Domain of unk 78.2 46 0.001 29.1 12.0 14 201-214 92-105 (230)
57 KOG1666 V-SNARE [Intracellular 75.5 53 0.0012 28.4 10.8 83 181-264 128-217 (220)
58 PF10661 EssA: WXG100 protein 75.3 3.4 7.3E-05 33.6 3.3 26 240-265 117-142 (145)
59 PF07889 DUF1664: Protein of u 74.0 43 0.00092 26.6 10.6 61 172-232 62-122 (126)
60 PF04102 SlyX: SlyX; InterPro 73.4 24 0.00052 24.7 6.9 49 177-225 3-51 (69)
61 smart00503 SynN Syntaxin N-ter 73.0 37 0.0008 25.5 8.6 91 33-124 3-105 (117)
62 PF04272 Phospholamban: Phosph 72.7 12 0.00026 24.1 4.6 11 241-251 34-44 (52)
63 PF06024 DUF912: Nucleopolyhed 72.5 1.5 3.2E-05 33.4 0.6 22 242-263 65-86 (101)
64 PRK00846 hypothetical protein; 72.4 34 0.00073 24.7 8.6 51 175-225 10-60 (77)
65 cd00179 SynN Syntaxin N-termin 70.3 47 0.001 26.3 9.0 91 34-125 2-105 (151)
66 TIGR01294 P_lamban phospholamb 70.1 13 0.00028 23.9 4.3 11 241-251 34-44 (52)
67 PF06143 Baculo_11_kDa: Baculo 70.0 6.7 0.00015 28.8 3.5 11 227-237 20-30 (84)
68 PRK11466 hybrid sensory histid 69.9 1.1E+02 0.0023 31.8 13.7 23 207-229 300-322 (914)
69 PHA03386 P10 fibrous body prot 68.5 30 0.00065 25.8 6.6 53 167-223 8-60 (94)
70 PF03670 UPF0184: Uncharacteri 68.4 18 0.0004 26.5 5.4 14 174-187 29-42 (83)
71 TIGR00383 corA magnesium Mg(2+ 68.3 80 0.0017 28.4 11.1 19 74-92 148-166 (318)
72 PRK11637 AmiB activator; Provi 68.0 1.1E+02 0.0023 29.1 12.3 63 175-237 72-134 (428)
73 PF04728 LPP: Lipoprotein leuc 67.1 37 0.00079 23.0 8.0 51 179-236 4-54 (56)
74 PRK02119 hypothetical protein; 66.3 44 0.00096 23.7 7.9 49 176-224 7-55 (73)
75 PRK04325 hypothetical protein; 64.6 49 0.0011 23.6 7.8 46 179-224 10-55 (74)
76 PF06363 Picorna_P3A: Picornav 64.3 39 0.00085 25.2 6.5 47 216-265 48-94 (100)
77 PRK00736 hypothetical protein; 64.3 47 0.001 23.3 7.6 45 180-224 7-51 (68)
78 PF05957 DUF883: Bacterial pro 64.3 55 0.0012 24.1 11.7 29 175-203 6-34 (94)
79 PRK04406 hypothetical protein; 64.0 51 0.0011 23.6 8.2 48 176-223 9-56 (75)
80 PHA03395 p10 fibrous body prot 63.1 39 0.00084 25.0 6.3 56 167-222 7-65 (87)
81 PF15106 TMEM156: TMEM156 prot 62.6 9.1 0.0002 33.0 3.4 22 241-263 177-198 (226)
82 PF12575 DUF3753: Protein of u 61.4 12 0.00027 26.6 3.3 24 240-263 43-66 (72)
83 PRK09973 putative outer membra 61.1 61 0.0013 23.9 7.0 24 179-202 25-48 (85)
84 PF01601 Corona_S2: Coronaviru 60.8 3.7 8E-05 40.6 0.8 22 241-262 547-568 (610)
85 PF01519 DUF16: Protein of unk 60.4 74 0.0016 24.3 8.3 58 175-232 34-93 (102)
86 cd00179 SynN Syntaxin N-termin 60.2 77 0.0017 25.0 8.4 61 174-234 9-69 (151)
87 TIGR02956 TMAO_torS TMAO reduc 60.2 2.1E+02 0.0045 29.8 13.7 27 207-233 300-326 (968)
88 KOG3385 V-SNARE [Intracellular 60.1 66 0.0014 25.1 7.4 24 240-263 94-117 (118)
89 PF10151 DUF2359: Uncharacteri 59.7 1.6E+02 0.0035 28.6 11.7 25 219-243 242-267 (469)
90 PF04859 DUF641: Plant protein 59.4 38 0.00082 27.1 6.2 39 71-121 83-121 (131)
91 PRK00295 hypothetical protein; 58.6 60 0.0013 22.7 7.6 46 179-224 6-51 (68)
92 PF04639 Baculo_E56: Baculovir 58.6 6.1 0.00013 35.6 1.7 25 241-265 276-300 (305)
93 PHA02975 hypothetical protein; 58.5 26 0.00056 24.7 4.4 36 228-263 26-62 (69)
94 PHA02650 hypothetical protein; 57.7 27 0.00058 25.3 4.5 24 240-263 44-67 (81)
95 PRK02793 phi X174 lysis protei 56.8 68 0.0015 22.7 7.7 47 178-224 8-54 (72)
96 COG4575 ElaB Uncharacterized c 55.9 90 0.002 23.9 11.0 75 172-246 13-88 (104)
97 PF05478 Prominin: Prominin; 55.3 2.6E+02 0.0057 29.1 19.1 17 189-205 361-377 (806)
98 PF09125 COX2-transmemb: Cytoc 54.1 33 0.00072 21.1 3.8 32 228-262 4-35 (38)
99 PF09680 Tiny_TM_bacill: Prote 53.4 16 0.00034 20.3 2.2 10 241-250 5-14 (24)
100 TIGR01732 tiny_TM_bacill conse 53.3 15 0.00033 20.8 2.1 13 241-253 7-19 (26)
101 PF11337 DUF3139: Protein of u 53.2 16 0.00035 26.6 3.0 8 253-260 18-25 (85)
102 PRK11637 AmiB activator; Provi 53.0 2E+02 0.0044 27.3 11.3 58 178-235 68-125 (428)
103 KOG3647 Predicted coiled-coil 51.9 1.8E+02 0.004 26.2 10.9 94 29-122 41-161 (338)
104 COG3883 Uncharacterized protei 51.6 1.4E+02 0.003 26.8 9.1 71 178-248 52-124 (265)
105 PF05393 Hum_adeno_E3A: Human 51.4 18 0.00039 26.8 2.9 18 244-261 35-52 (94)
106 PF05283 MGC-24: Multi-glycosy 50.8 14 0.00031 31.3 2.6 23 242-264 163-185 (186)
107 PHA02909 hypothetical protein; 50.8 25 0.00053 23.8 3.3 8 240-247 30-37 (72)
108 PHA03054 IMV membrane protein; 50.8 46 0.00099 23.6 4.7 24 240-263 43-66 (72)
109 PF09771 Tmemb_18A: Transmembr 50.7 43 0.00094 26.5 5.2 44 218-261 5-49 (125)
110 PF12495 Vip3A_N: Vegetative i 50.0 80 0.0017 25.0 6.5 64 172-235 46-116 (177)
111 PF06972 DUF1296: Protein of u 50.0 15 0.00032 25.2 2.1 29 12-42 26-54 (60)
112 PF01544 CorA: CorA-like Mg2+ 49.6 1.5E+02 0.0033 25.8 9.3 19 247-265 274-292 (292)
113 KOG3065 SNAP-25 (synaptosome-a 49.5 1.9E+02 0.0041 26.0 9.8 56 176-231 74-132 (273)
114 PRK15396 murein lipoprotein; P 49.2 99 0.0022 22.4 7.2 21 215-235 55-75 (78)
115 PF11166 DUF2951: Protein of u 49.2 1.1E+02 0.0024 23.0 8.4 46 175-220 8-53 (98)
116 PF01034 Syndecan: Syndecan do 49.2 5.4 0.00012 27.7 -0.1 20 245-264 19-38 (64)
117 PF00523 Fusion_gly: Fusion gl 49.0 13 0.00027 36.4 2.3 25 208-232 440-464 (490)
118 PHA02819 hypothetical protein; 48.8 52 0.0011 23.3 4.7 24 240-263 41-64 (71)
119 PRK00523 hypothetical protein; 48.7 28 0.00061 24.8 3.5 10 245-254 7-16 (72)
120 PF00558 Vpu: Vpu protein; In 48.5 24 0.00052 25.8 3.2 18 245-262 8-25 (81)
121 PF10669 Phage_Gp23: Protein g 48.4 65 0.0014 24.4 5.5 33 164-196 82-114 (121)
122 PF11315 Med30: Mediator compl 48.1 1.5E+02 0.0033 24.2 8.4 19 2-20 56-74 (150)
123 KOG0994 Extracellular matrix g 48.0 2.4E+02 0.0052 30.8 11.2 81 3-92 1173-1256(1758)
124 PF01102 Glycophorin_A: Glycop 46.6 27 0.00058 27.5 3.5 10 252-261 78-87 (122)
125 TIGR01478 STEVOR variant surfa 44.6 22 0.00048 32.1 3.0 23 241-263 260-282 (295)
126 PF13396 PLDc_N: Phospholipase 44.5 23 0.00049 22.4 2.3 20 245-264 25-44 (46)
127 PHA03240 envelope glycoprotein 44.1 22 0.00047 30.9 2.7 15 241-255 214-228 (258)
128 smart00503 SynN Syntaxin N-ter 43.9 1.3E+02 0.0029 22.3 8.8 62 173-234 10-71 (117)
129 PF11239 DUF3040: Protein of u 42.8 88 0.0019 22.5 5.5 23 206-228 9-31 (82)
130 PTZ00370 STEVOR; Provisional 42.7 25 0.00053 31.8 3.0 23 241-263 256-278 (296)
131 COG3763 Uncharacterized protei 42.1 33 0.00072 24.3 3.0 6 257-262 19-24 (71)
132 PF12877 DUF3827: Domain of un 40.8 15 0.00033 36.7 1.5 28 237-264 265-294 (684)
133 PRK15048 methyl-accepting chem 40.4 2.9E+02 0.0064 26.9 10.5 94 168-264 115-214 (553)
134 PF12751 Vac7: Vacuolar segreg 39.9 29 0.00063 32.7 3.1 12 252-263 313-324 (387)
135 PF00804 Syntaxin: Syntaxin; 39.8 1.4E+02 0.003 21.4 8.4 64 171-234 7-70 (103)
136 KOG0859 Synaptobrevin/VAMP-lik 39.5 71 0.0015 27.4 5.1 16 176-191 120-135 (217)
137 PF02009 Rifin_STEVOR: Rifin/s 38.8 34 0.00074 31.2 3.4 20 245-264 261-280 (299)
138 PHA02414 hypothetical protein 38.4 1.7E+02 0.0038 22.1 9.4 18 247-264 94-111 (111)
139 PF15188 CCDC-167: Coiled-coil 38.4 1.2E+02 0.0026 22.4 5.6 27 211-237 41-67 (85)
140 PF10498 IFT57: Intra-flagella 38.2 3E+02 0.0064 25.8 9.6 18 103-120 330-347 (359)
141 PHA03049 IMV membrane protein; 37.6 48 0.001 23.2 3.1 12 252-263 12-23 (68)
142 smart00502 BBC B-Box C-termina 37.2 1.7E+02 0.0038 21.7 8.7 52 192-243 46-98 (127)
143 PF05739 SNARE: SNARE domain; 36.7 1.3E+02 0.0027 20.0 10.1 56 173-228 6-61 (63)
144 PF12718 Tropomyosin_1: Tropom 35.9 2.3E+02 0.005 22.7 10.0 66 171-236 42-110 (143)
145 PF00523 Fusion_gly: Fusion gl 35.7 67 0.0014 31.4 5.0 33 196-228 435-467 (490)
146 PRK00720 tatA twin arginine tr 35.3 37 0.00081 24.6 2.4 12 242-253 7-18 (78)
147 KOG0862 Synaptobrevin/VAMP-lik 35.3 2.6E+02 0.0057 24.2 8.0 20 200-219 156-175 (216)
148 COG4736 CcoQ Cbb3-type cytochr 35.1 52 0.0011 22.6 3.0 10 255-264 22-31 (60)
149 PF05781 MRVI1: MRVI1 protein; 35.1 89 0.0019 30.8 5.7 20 34-53 195-214 (538)
150 KOG0994 Extracellular matrix g 35.0 6.6E+02 0.014 27.8 18.2 35 201-235 1593-1627(1758)
151 COG5336 Uncharacterized protei 35.0 75 0.0016 24.6 4.1 17 230-246 63-79 (116)
152 PRK04654 sec-independent trans 34.9 3E+02 0.0066 23.8 8.9 19 183-201 32-50 (214)
153 PF05961 Chordopox_A13L: Chord 34.7 55 0.0012 23.0 3.1 11 252-262 12-22 (68)
154 PF08614 ATG16: Autophagy prot 34.6 2.8E+02 0.006 23.3 9.5 69 168-236 106-174 (194)
155 cd07627 BAR_Vps5p The Bin/Amph 34.5 2.9E+02 0.0063 23.5 10.4 71 167-238 7-83 (216)
156 PRK02958 tatA twin arginine tr 34.3 40 0.00087 24.1 2.4 7 242-248 7-13 (73)
157 COG3883 Uncharacterized protei 33.7 3.5E+02 0.0077 24.3 11.5 56 171-226 52-107 (265)
158 PF02419 PsbL: PsbL protein; 33.7 1E+02 0.0022 18.9 3.7 17 245-261 19-35 (37)
159 COG4942 Membrane-bound metallo 33.5 4.3E+02 0.0094 25.4 9.9 44 190-233 78-121 (420)
160 PF08650 DASH_Dad4: DASH compl 33.5 1.5E+02 0.0033 21.1 5.3 32 203-234 8-39 (72)
161 CHL00038 psbL photosystem II p 33.3 62 0.0013 19.9 2.8 17 245-261 20-36 (38)
162 PRK02793 phi X174 lysis protei 32.8 1.8E+02 0.0039 20.5 6.6 31 201-231 17-47 (72)
163 PF05283 MGC-24: Multi-glycosy 32.6 46 0.00099 28.2 2.9 24 241-264 159-182 (186)
164 PF13747 DUF4164: Domain of un 32.3 2.1E+02 0.0045 21.1 8.5 56 178-233 32-87 (89)
165 PF00261 Tropomyosin: Tropomyo 32.2 3.4E+02 0.0073 23.5 9.7 65 171-235 85-149 (237)
166 PF10855 DUF2648: Protein of u 32.1 14 0.0003 22.0 -0.1 13 253-265 8-20 (33)
167 PF04102 SlyX: SlyX; InterPro 32.1 1.8E+02 0.0038 20.2 6.5 34 201-234 13-46 (69)
168 PRK04598 tatA twin arginine tr 32.0 40 0.00087 24.6 2.2 8 242-249 7-14 (81)
169 COG1470 Predicted membrane pro 31.9 36 0.00079 32.9 2.5 16 249-265 494-509 (513)
170 PF01105 EMP24_GP25L: emp24/gp 31.6 12 0.00026 30.2 -0.7 25 177-201 111-135 (183)
171 PF11293 DUF3094: Protein of u 31.2 87 0.0019 21.0 3.5 22 240-261 29-50 (55)
172 TIGR03147 cyt_nit_nrfF cytochr 31.2 74 0.0016 25.2 3.7 26 240-265 100-125 (126)
173 COG4537 ComGC Competence prote 31.0 62 0.0014 24.6 3.1 10 227-236 2-11 (107)
174 PRK04406 hypothetical protein; 30.9 2E+02 0.0043 20.5 7.8 33 200-232 19-51 (75)
175 PHA02902 putative IMV membrane 30.6 62 0.0013 22.5 2.8 14 251-264 12-25 (70)
176 PF05008 V-SNARE: Vesicle tran 30.5 1.9E+02 0.0041 20.2 7.8 26 97-122 50-75 (79)
177 TIGR02878 spore_ypjB sporulati 30.4 3.5E+02 0.0075 23.8 8.0 44 218-261 173-218 (233)
178 PF11027 DUF2615: Protein of u 30.4 1.5E+02 0.0032 22.7 5.1 13 224-236 16-28 (103)
179 KOG3287 Membrane trafficking p 29.8 3.8E+02 0.0083 23.4 8.7 24 171-194 146-169 (236)
180 PRK03554 tatA twin arginine tr 29.6 53 0.0011 24.4 2.5 11 242-252 7-17 (89)
181 PRK15396 murein lipoprotein; P 29.6 2.2E+02 0.0048 20.6 8.0 35 177-211 38-72 (78)
182 PF06024 DUF912: Nucleopolyhed 29.4 52 0.0011 24.8 2.5 20 242-262 62-81 (101)
183 PF14992 TMCO5: TMCO5 family 29.4 4.3E+02 0.0094 23.9 12.5 51 166-216 118-168 (280)
184 PF05615 THOC7: Tho complex su 29.2 2.8E+02 0.0061 21.7 12.2 86 8-93 16-106 (139)
185 cd01324 cbb3_Oxidase_CcoQ Cyto 28.9 87 0.0019 20.3 3.2 16 247-262 16-31 (48)
186 PF06682 DUF1183: Protein of u 28.9 50 0.0011 30.4 2.8 15 249-263 162-176 (318)
187 TIGR00847 ccoS cytochrome oxid 28.8 1.1E+02 0.0023 20.3 3.6 8 257-264 20-27 (51)
188 PF04906 Tweety: Tweety; Inte 28.7 2E+02 0.0043 27.3 6.9 25 240-264 185-209 (406)
189 PHA02844 putative transmembran 28.3 89 0.0019 22.4 3.3 23 241-263 44-66 (75)
190 PF06716 DUF1201: Protein of u 28.2 1.1E+02 0.0023 19.9 3.4 8 257-264 26-33 (54)
191 PF15361 RIC3: Resistance to i 28.1 74 0.0016 26.0 3.4 24 241-264 80-103 (152)
192 PF15176 LRR19-TM: Leucine-ric 28.0 93 0.002 23.7 3.6 26 239-264 14-39 (102)
193 PF06422 PDR_CDR: CDR ABC tran 28.0 84 0.0018 23.7 3.5 15 239-253 49-63 (103)
194 PHA03231 glycoprotein BALF4; P 27.8 2.1E+02 0.0044 30.0 7.1 22 178-199 659-680 (829)
195 PRK11085 magnesium/nickel/coba 27.8 4.8E+02 0.01 23.9 11.0 14 77-90 148-161 (316)
196 PRK00736 hypothetical protein; 27.8 2.1E+02 0.0046 19.9 6.6 19 172-190 13-31 (68)
197 KOG0859 Synaptobrevin/VAMP-lik 27.8 2.2E+02 0.0048 24.5 6.2 16 178-193 125-140 (217)
198 KOG0980 Actin-binding protein 27.7 5.3E+02 0.012 27.3 9.9 75 182-256 718-806 (980)
199 PF06009 Laminin_II: Laminin D 27.5 20 0.00044 28.6 0.0 36 175-210 49-84 (138)
200 PF10805 DUF2730: Protein of u 27.4 2.8E+02 0.006 21.0 8.4 61 168-235 39-101 (106)
201 PF08320 PIG-X: PIG-X / PBN1; 27.4 58 0.0013 27.7 2.8 25 241-265 183-207 (207)
202 PF07798 DUF1640: Protein of u 27.4 3.6E+02 0.0077 22.3 11.2 67 193-263 107-173 (177)
203 TIGR02132 phaR_Bmeg polyhydrox 27.0 3.9E+02 0.0084 22.6 7.9 54 170-223 85-138 (189)
204 PF11044 TMEMspv1-c74-12: Plec 27.0 1.3E+02 0.0028 19.4 3.5 14 242-255 4-17 (49)
205 PRK04325 hypothetical protein; 26.7 2.4E+02 0.0051 20.0 7.1 32 200-231 17-48 (74)
206 PF12420 DUF3671: Protein of u 26.6 1.7E+02 0.0037 22.3 4.9 19 215-233 23-41 (104)
207 PRK00295 hypothetical protein; 26.5 2.3E+02 0.0049 19.7 6.6 30 201-230 14-43 (68)
208 PF07889 DUF1664: Protein of u 26.5 3.3E+02 0.0071 21.6 9.4 33 198-230 74-106 (126)
209 PF14523 Syntaxin_2: Syntaxin- 26.4 2.6E+02 0.0056 20.4 6.7 53 179-232 4-56 (102)
210 PF09604 Potass_KdpF: F subuni 26.2 1.1E+02 0.0024 17.2 2.8 15 248-262 4-18 (25)
211 PF03408 Foamy_virus_ENV: Foam 26.2 81 0.0018 32.7 3.9 32 228-260 46-79 (981)
212 PF03597 CcoS: Cytochrome oxid 26.2 1.3E+02 0.0029 19.3 3.6 6 259-264 21-26 (45)
213 PRK02119 hypothetical protein; 25.8 2.5E+02 0.0053 19.9 6.6 31 201-231 18-48 (73)
214 COG4640 Predicted membrane pro 25.6 1E+02 0.0022 29.3 4.1 14 223-236 30-43 (465)
215 PRK00753 psbL photosystem II r 25.5 94 0.002 19.2 2.6 17 245-261 21-37 (39)
216 PF10215 Ost4: Oligosaccaryltr 25.3 1.4E+02 0.003 18.2 3.4 16 247-262 12-27 (35)
217 PRK01614 tatE twin arginine tr 25.3 61 0.0013 23.8 2.1 8 242-249 7-14 (85)
218 PF07106 TBPIP: Tat binding pr 25.3 2.6E+02 0.0057 22.7 6.3 49 71-122 82-130 (169)
219 PF06837 Fijivirus_P9-2: Fijiv 24.8 1.5E+02 0.0033 25.2 4.6 12 211-222 51-62 (214)
220 COG1775 HgdB Benzoyl-CoA reduc 24.5 1.7E+02 0.0036 27.6 5.4 41 2-42 164-205 (379)
221 PF05399 EVI2A: Ectropic viral 24.5 97 0.0021 26.8 3.5 13 245-257 136-148 (227)
222 PF08372 PRT_C: Plant phosphor 24.3 4E+02 0.0087 21.9 8.2 21 179-199 53-73 (156)
223 PF14018 DUF4234: Domain of un 24.3 2.3E+02 0.0049 19.7 5.0 16 247-263 47-62 (75)
224 PRK10144 formate-dependent nit 24.3 1.1E+02 0.0024 24.2 3.6 25 240-264 100-124 (126)
225 PF04568 IATP: Mitochondrial A 24.1 1.8E+02 0.004 22.0 4.6 26 191-216 75-100 (100)
226 PF05791 Bacillus_HBL: Bacillu 24.0 4.2E+02 0.0092 22.0 9.6 61 176-236 101-161 (184)
227 PF04111 APG6: Autophagy prote 23.9 5.6E+02 0.012 23.4 8.8 65 171-235 71-135 (314)
228 PF09548 Spore_III_AB: Stage I 23.7 4.1E+02 0.0089 21.7 7.7 29 188-216 108-137 (170)
229 KOG0771 Prolactin regulatory e 23.7 90 0.002 29.6 3.5 22 240-261 368-389 (398)
230 PF07195 FliD_C: Flagellar hoo 23.7 4.2E+02 0.0091 22.9 7.6 62 175-236 175-237 (239)
231 PF14283 DUF4366: Domain of un 23.4 18 0.00038 31.5 -1.2 18 244-261 163-180 (218)
232 PF11137 DUF2909: Protein of u 23.1 1.4E+02 0.003 20.7 3.5 16 249-264 10-25 (63)
233 PF12108 SF3a60_bindingd: Spli 23.1 82 0.0018 18.2 2.0 14 30-43 3-16 (28)
234 PRK09738 small toxic polypepti 22.9 91 0.002 20.8 2.4 14 241-254 9-22 (52)
235 PF14362 DUF4407: Domain of un 22.9 5.5E+02 0.012 22.9 17.7 8 226-233 248-255 (301)
236 PF08372 PRT_C: Plant phosphor 22.9 3.1E+02 0.0067 22.6 6.1 7 200-206 77-83 (156)
237 PF10046 BLOC1_2: Biogenesis o 22.9 3.3E+02 0.007 20.3 9.3 55 172-230 36-90 (99)
238 PF13060 DUF3921: Protein of u 22.8 2.3E+02 0.005 18.6 6.9 38 189-226 12-49 (58)
239 PTZ00046 rifin; Provisional 22.6 4.4E+02 0.0094 24.8 7.7 11 12-22 39-49 (358)
240 PF02790 COX2_TM: Cytochrome C 22.6 1.2E+02 0.0026 21.3 3.4 7 257-263 41-47 (84)
241 PF05808 Podoplanin: Podoplani 22.6 29 0.00062 28.7 0.0 22 244-265 134-155 (162)
242 PF08114 PMP1_2: ATPase proteo 22.5 53 0.0011 20.8 1.2 9 252-260 22-30 (43)
243 PF03904 DUF334: Domain of unk 22.4 5.3E+02 0.012 22.6 8.3 26 192-217 113-138 (230)
244 PF00261 Tropomyosin: Tropomyo 22.2 2.5E+02 0.0054 24.4 5.9 41 191-231 28-68 (237)
245 PF05814 DUF843: Baculovirus p 22.1 1.3E+02 0.0027 22.1 3.3 28 232-259 16-43 (83)
246 PF10256 Erf4: Golgin subfamil 22.0 3.1E+02 0.0068 20.8 5.8 15 222-236 35-49 (118)
247 PF13150 DUF3989: Protein of u 22.0 2E+02 0.0044 21.1 4.4 11 226-236 12-22 (85)
248 PF08006 DUF1700: Protein of u 22.0 4.5E+02 0.0097 21.5 10.6 25 180-204 43-67 (181)
249 PF09577 Spore_YpjB: Sporulati 21.9 4.6E+02 0.0099 23.0 7.4 25 77-103 50-74 (232)
250 KOG1094 Discoidin domain recep 21.9 74 0.0016 32.1 2.6 20 245-264 394-413 (807)
251 TIGR02115 potass_kdpF K+-trans 21.8 1.1E+02 0.0025 17.3 2.3 10 252-261 7-16 (26)
252 PRK09759 small toxic polypepti 21.8 1.1E+02 0.0024 20.2 2.6 13 241-253 7-19 (50)
253 PHA02855 anti-apoptotic membra 21.8 4.8E+02 0.01 21.8 9.0 24 241-264 150-173 (180)
254 PF04728 LPP: Lipoprotein leuc 21.8 2.7E+02 0.0058 18.9 8.8 38 176-213 15-52 (56)
255 PRK10856 cytoskeletal protein 21.6 1E+02 0.0022 28.5 3.4 22 96-117 26-47 (331)
256 PF11119 DUF2633: Protein of u 21.5 1.6E+02 0.0035 20.1 3.5 20 241-260 8-27 (59)
257 KOG0946 ER-Golgi vesicle-tethe 21.4 6.9E+02 0.015 26.3 9.3 67 167-233 660-726 (970)
258 PRK08032 fliD flagellar cappin 21.4 2.6E+02 0.0056 27.0 6.3 69 175-243 389-457 (462)
259 KOG0933 Structural maintenance 21.4 1.1E+03 0.023 25.7 18.2 163 33-230 733-902 (1174)
260 PF14257 DUF4349: Domain of un 21.0 5.6E+02 0.012 22.3 10.8 18 198-215 175-192 (262)
261 PHA02675 ORF104 fusion protein 20.8 3.5E+02 0.0076 19.9 7.4 43 188-230 40-82 (90)
262 PF06738 DUF1212: Protein of u 20.6 2.8E+02 0.006 22.9 5.6 24 220-243 82-105 (193)
263 PF05781 MRVI1: MRVI1 protein; 20.4 3E+02 0.0065 27.3 6.4 19 72-90 252-270 (538)
264 PRK10404 hypothetical protein; 20.3 3.9E+02 0.0084 20.2 11.4 6 240-245 79-84 (101)
265 TIGR01477 RIFIN variant surfac 20.1 7.3E+02 0.016 23.3 8.9 16 249-264 319-334 (353)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=219.15 Aligned_cols=218 Identities=22% Similarity=0.262 Sum_probs=153.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhHHHhhh-hh-hhh-hhhhcHHHHHHHHHHHHHHHHHHHHH--Hhh---ccCCCHH
Q 024570 30 VSGDDAFARLYGAVEADIEAALQKAESASNE-KN-RAS-VVALNAEIRRTKARLLEEVPKLQRLA--IKK---VKGLSTE 101 (265)
Q Consensus 30 ~~~~DpF~~v~~~~~~~l~~l~~~~~~~~~e-rn-r~~-~~~~~~eir~~l~~l~~~l~~L~~~~--~~k---~~~lt~~ 101 (265)
.+..|||+.++.++....+.+...+..+... +. ... .|.. ..||+ .+++.+.+|++.. ..+ .+++++.
T Consensus 2 ~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t-~~lr~---~i~~~~edl~~~~~il~~~~~~~~ide~ 77 (235)
T KOG3202|consen 2 LSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELT-SVLRR---SIEEDLEDLDELISILERNPSKFGIDEF 77 (235)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHH---HhHHHHHHHHHHHHHHHhCcccccCcHH
Confidence 3568999999999999999998775543332 22 222 2333 46663 4555555555543 222 4689999
Q ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCCC-----CCCCCCCCCcccccCCCCCCCchhhccchh-hHHHHHHHHHHHhh
Q 024570 102 ELVARNDLVLALPDRIQAIPDGTAAAPKQS-----GGWGASASRTEIKFDSDGRFDDEYFQQTEE-SSQFRQEYEMRKMK 175 (265)
Q Consensus 102 El~~R~~~v~~l~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~te~-~~~~~q~q~~~~~~ 175 (265)
|+.+|+.++.+++.++..++..+...+..+ .+.+....+. ..+ ..+...+.+ .+...+.|++++++
T Consensus 78 El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~--~~~------~~~~~~~~D~v~~~~~~qqqm~~e 149 (235)
T KOG3202|consen 78 ELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPN--LDE------AMSRASGLDNVQEIVQLQQQMLQE 149 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCc--hhh------hHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999999999998887522111 1111110000 000 000011112 35566788899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGI 255 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i 255 (265)
||++||.|+++|+++|++|..||+||++|+.+||++++.||.|+++|.++++++.++.+..+++++||++ +++|+++++
T Consensus 150 QDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~i-l~l~~~~~l 228 (235)
T KOG3202|consen 150 QDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAI-LLLVGLLLL 228 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999955566678854 444444444
Q ss_pred HHHHH
Q 024570 256 AAYLY 260 (265)
Q Consensus 256 ~~vl~ 260 (265)
++++|
T Consensus 229 vv~i~ 233 (235)
T KOG3202|consen 229 VVIIF 233 (235)
T ss_pred HHHHh
Confidence 45554
No 2
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.5e-12 Score=99.48 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=66.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 024570 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLL 249 (265)
Q Consensus 174 ~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll 249 (265)
.|.|+.++.|.+-|..||.++..||+|++.||++||.+++++|+|.+.|.+++.|++.+.+. +.-+.||+.++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~ 106 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFS 106 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999997776 4444677544333
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.36 E-value=7.7e-12 Score=87.29 Aligned_cols=62 Identities=35% Similarity=0.597 Sum_probs=59.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
+||+.|+.|+.+|..|++++..||.||++|+++||+|+.+|++|..+|..++++|.++.++.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999988763
No 4
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.26 E-value=4.4e-11 Score=90.92 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh----hhhhcHHHHHHHHHHHHHHHHHHHHHHh-----hccCCCHHHHH
Q 024570 34 DAFARLYGAVEADIEAALQKAESASNEKNRAS----VVALNAEIRRTKARLLEEVPKLQRLAIK-----KVKGLSTEELV 104 (265)
Q Consensus 34 DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~----~~~~~~eir~~l~~l~~~l~~L~~~~~~-----k~~~lt~~El~ 104 (265)
|||+.|++++.+.|..+.+++..+...+..+. ......+|+..|+.++++|.+|++++.- ..|+|++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 89999999999999999888665444333221 1123369999999999999999999532 13699999999
Q ss_pred HHHHHHHHHHHHHHccc
Q 024570 105 ARNDLVLALPDRIQAIP 121 (265)
Q Consensus 105 ~R~~~v~~l~~~l~~l~ 121 (265)
+|++||..++.++..|+
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998764
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.2e-08 Score=90.45 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=80.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHH
Q 024570 169 YEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSR--NFCIDI 246 (265)
Q Consensus 169 q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~--~~ci~i 246 (265)
+...+++.++.+.+|...|..+++|..++|.-|.+|++++|.|+.+|+++...+..++..|.+..++.++.+ .||.++
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~ 250 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLL 250 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 456778899999999999999999999999999999999999999999999999999999999998876544 344445
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024570 247 VLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~~k 264 (265)
++++++|++++++|..++
T Consensus 251 v~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 251 VGGPVGLIIGLIIAGIAA 268 (269)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555556666666666543
No 6
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.05 E-value=1.1e-09 Score=75.11 Aligned_cols=58 Identities=33% Similarity=0.548 Sum_probs=56.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 174 ~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
+++|+.|+.|+.+|..|++++..|+.||..|+++||.++..|+.+...+..+++++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999976
No 7
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.2e-08 Score=92.04 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=63.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNF 242 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ 242 (265)
+++--+.+-.|..++..||++..+|...|+.|++|+|+|+.+|.++.+.+..++..+++.+...++.++|
T Consensus 201 iq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~ 270 (297)
T KOG0810|consen 201 IQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW 270 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455577889999999999999999999999999999999999999999999999999988887766644
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.8e-07 Score=78.15 Aligned_cols=242 Identities=16% Similarity=0.224 Sum_probs=132.9
Q ss_pred ChHHHHHHHHHHHHHhhccCch-hhhhcc-C-----CCCCcHHHHHHHHHHHHHHHHHHHhHHHhhh------hh-hh-h
Q 024570 1 MSVIDILTRVDSICKKYDKYDV-EKQRET-N-----VSGDDAFARLYGAVEADIEAALQKAESASNE------KN-RA-S 65 (265)
Q Consensus 1 ~~~~~~~~r~~~~~~k~~~~~~-~~~~~~-~-----~~~~DpF~~v~~~~~~~l~~l~~~~~~~~~e------rn-r~-~ 65 (265)
||.+|==-......+.|.+-.. ....++ | ....-+|...-.-+...|....++++..... .+ +. -
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve 80 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE 80 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence 6777766666777777744211 111110 0 0123578888888877777776554322221 11 11 1
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHcccccc--------------------
Q 024570 66 VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEE-LVARNDLVLALPDRIQAIPDGT-------------------- 124 (265)
Q Consensus 66 ~~~~~~eir~~l~~l~~~l~~L~~~~~~k~~~lt~~E-l~~R~~~v~~l~~~l~~l~~~~-------------------- 124 (265)
+..++.-|+..+..|...+.+|.+- .+...+.+..- ..-=+..|..|...+..+...+
T Consensus 81 I~eLT~iikqdi~sln~~i~~Lqei-~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dk 159 (311)
T KOG0812|consen 81 IQELTFIIKQDITSLNSQIAQLQEI-VKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDK 159 (311)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHH-HHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 3455566777888888888888776 34334444211 2222344444444443332211
Q ss_pred -cCCC-CCCC-CCCC--CCCCccccc-CCCCCCCch--hhccchhhHHHHHHHHHHHhhhh-------hhHHHHHHHHHH
Q 024570 125 -AAAP-KQSG-GWGA--SASRTEIKF-DSDGRFDDE--YFQQTEESSQFRQEYEMRKMKQD-------QGLDMISEGLDT 189 (265)
Q Consensus 125 -~~~~-~~~~-~~~~--~~~~~~~~~-~~~g~~~~~--~~~~te~~~~~~q~q~~~~~~QD-------~~Ld~l~~~v~~ 189 (265)
+.++ .-++ +... +..+|+... +..+....+ ....++.... .|+|...++++| ..+..|+.+|..
T Consensus 160 fs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~-qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsE 238 (311)
T KOG0812|consen 160 FSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNP-QQQQMALLDESDEYVQERAKTMQNIESTISE 238 (311)
T ss_pred hccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0000 0000 000111000 000000000 0000000000 134445555555 556789999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 024570 190 LKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (265)
Q Consensus 190 lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (265)
|..+...+..-|.+|++++..||+.||.+.-.+..+...|-+.+...++.+|.++
T Consensus 239 lG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmv 293 (311)
T KOG0812|consen 239 LGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMV 293 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999999999999999999999998877654443
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.02 E-value=1.8e-09 Score=75.23 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=59.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 169 YEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 169 q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
+...++++|+.|+.|+.+|..+++++..|+.+|..|+++||.++..++.+...+..+++++++
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999999999999999999999999875
No 10
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.9e-07 Score=80.73 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh--hhhh--hhhhhhhcHHHHHHHHHHHHHHHHH----HHHHH--hhcc-CCCHHHH
Q 024570 35 AFARLYGAVEADIEAALQKAESAS--NEKN--RASVVALNAEIRRTKARLLEEVPKL----QRLAI--KKVK-GLSTEEL 103 (265)
Q Consensus 35 pF~~v~~~~~~~l~~l~~~~~~~~--~ern--r~~~~~~~~eir~~l~~l~~~l~~L----~~~~~--~k~~-~lt~~El 103 (265)
-|.++.+++...|..++.+..+.. +.++ +++ ... .+=...|+.+..++-++ ++.+. ++.. ..++.|.
T Consensus 58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF-~Dk-~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSF-SDK-REDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 488999999988888875543211 1222 111 111 11122344444444333 33332 2222 4688999
Q ss_pred HHHHHHHHHHHHHHHcccccccCCC--------CC--CCCCCCCCCCcccccCCCCCCCchhhccchhhHHHHHHHH---
Q 024570 104 VARNDLVLALPDRIQAIPDGTAAAP--------KQ--SGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYE--- 170 (265)
Q Consensus 104 ~~R~~~v~~l~~~l~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~te~~~~~~q~q~--- 170 (265)
--|.++...+-.++..+...+.... .+ ++...-.+..+. .+. ..++++ . ..-+.+.|.
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~--~~~--~dd~d~-~----~~~~qe~ql~~~ 206 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNT--VDL--PDDEDF-S----DRTFQEQQLMLF 206 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhcccc--ccC--cchhhh-h----hhhHHHHHHHHH
Confidence 9999988888888887766553210 00 000000000110 000 001111 1 111211111
Q ss_pred ----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q 024570 171 ----MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDI 246 (265)
Q Consensus 171 ----~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i 246 (265)
..-.+-++.+-.|..+|..|.++..+|+.-|-+|+-++|.||-.++.|..++..+.+.|.+.-...+..+++|++.
T Consensus 207 e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~ 286 (305)
T KOG0809|consen 207 ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVIL 286 (305)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehH
Confidence 2334678889999999999999999999999999999999999999999999999999999777666666554333
Q ss_pred HH
Q 024570 247 VL 248 (265)
Q Consensus 247 ~l 248 (265)
+|
T Consensus 287 ~L 288 (305)
T KOG0809|consen 287 ML 288 (305)
T ss_pred HH
Confidence 33
No 11
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.89 E-value=2.6e-08 Score=87.35 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=67.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRN 241 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~ 241 (265)
..|+.+..+-|+.+..|..+|..|.++..+||.=|.+|+.+.|.||..+++|...++.|++.|.+.-.+.+..++
T Consensus 184 ~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k 258 (283)
T COG5325 184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKK 258 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhcc
Confidence 345556778999999999999999999999999999999999999999999999999999999999888764443
No 12
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.1e-08 Score=91.05 Aligned_cols=61 Identities=38% Similarity=0.494 Sum_probs=58.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
-.++|..|++|++.+++||.||.+||.||+.||+.||.|.+++|+.+.++..+|+|+++++
T Consensus 213 edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 213 EDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 3389999999999999999999999999999999999999999999999999999999864
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.60 E-value=1.4e-06 Score=77.31 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILG 254 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~ 254 (265)
.||+-.++|..-...||+.+..+++-|...+..|+.....+|+....|..+..||+....+ +.+ |++|+++++|+++
T Consensus 164 ~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~--~~~-~~~~~~i~~v~~~ 240 (251)
T PF09753_consen 164 LQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK--SWG-CWTWLMIFVVIIV 240 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc-HHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999997654 222 4445544444333
Q ss_pred HHHHHHHHh
Q 024570 255 IAAYLYNVL 263 (265)
Q Consensus 255 i~~vl~~~~ 263 (265)
| +++++++
T Consensus 241 F-i~mvl~i 248 (251)
T PF09753_consen 241 F-IMMVLFI 248 (251)
T ss_pred H-HHHHHHh
Confidence 3 4444443
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.39 E-value=1.8e-06 Score=74.13 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLR---SSRNFCIDIVL 248 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~---~~~~~ci~i~l 248 (265)
--+.|-.|..++..|-++..+|.+++-+|.++.|-++.++..++..+..++..+.+.++..| .++++|+.|++
T Consensus 183 Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~ 258 (280)
T COG5074 183 RHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICF 258 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHH
Confidence 34567889999999999999999999999999999999999999999999999999988775 34456644333
No 15
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0022 Score=54.77 Aligned_cols=86 Identities=14% Similarity=0.241 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAA 257 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~ 257 (265)
+.|..=+......-++|..|=++|..|-+-|..--+..-.|++.|.++.+-|+.+.++.-.. +|.+.+++++.+++|++
T Consensus 135 ~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~n-k~~~~aii~~l~~~il~ 213 (220)
T KOG1666|consen 135 DRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRN-KFTLTAIIALLVLAILL 213 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444556667777899999999999999999999999999999999999998888765443 45445555556666668
Q ss_pred HHHHHhc
Q 024570 258 YLYNVLK 264 (265)
Q Consensus 258 vl~~~~k 264 (265)
++|+-|+
T Consensus 214 ilY~kf~ 220 (220)
T KOG1666|consen 214 ILYSKFT 220 (220)
T ss_pred HHHHhcC
Confidence 8887653
No 16
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.80 E-value=0.0006 Score=58.43 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=63.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILG 254 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~ 254 (265)
-|.+-.+.+..-++.||+.+...++-|++-|.-+......+|.....|..+..++.+.-++-+ ..|..|.++++|+++
T Consensus 152 lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~s 229 (244)
T KOG2678|consen 152 LQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVILS 229 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999999999999665522 334434444444333
Q ss_pred H
Q 024570 255 I 255 (265)
Q Consensus 255 i 255 (265)
+
T Consensus 230 F 230 (244)
T KOG2678|consen 230 F 230 (244)
T ss_pred H
Confidence 3
No 17
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.30 E-value=0.0088 Score=44.75 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAA 257 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~ 257 (265)
+.|....+.+..--+.+..--++|.+|+.-|..+++..+..++.|..+.+-++.+-+....+ .|.++ +.++|+++.
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D-~~li~---~~~~~f~~~ 83 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTD-RILIF---FAFLFFLLV 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHH---HHHHHHHHH
Confidence 44555555555556666666778999999999999999999999999999999977664333 34433 333444445
Q ss_pred HHHHHhcC
Q 024570 258 YLYNVLKK 265 (265)
Q Consensus 258 vl~~~~k~ 265 (265)
++|.++|+
T Consensus 84 v~yI~~rR 91 (92)
T PF03908_consen 84 VLYILWRR 91 (92)
T ss_pred HHHHhhhc
Confidence 56655553
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0095 Score=46.23 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHh
Q 024570 205 VPLMDEIDTKVDRATA---DLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 205 ~~lLd~l~~~vd~~~~---~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
++-|++|++..|..+. ...+...++++-+.= .+.++.+++.++++|+++++++|+++
T Consensus 56 ~ekL~~L~drad~L~~~as~F~~~A~klkrk~wW--kn~Km~~il~~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 56 GEKLDELDDRADQLQAGASQFEKTAVKLKRKMWW--KNCKMRIILGLVIIILLVVIIIYIFL 115 (116)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666555443 344444444442211 22344445555555555555565543
No 19
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.14 Score=44.06 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGI 255 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i 255 (265)
..|..-+..+..+=..|.+|=+-|.+|+..|.....+|-.....|+-.+.-|.-+-+.++.++.+.++.++++++++.
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~y 206 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMY 206 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456666777777778899999999999999999999999999999998888887777766654333333333333333
No 20
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.79 E-value=0.031 Score=41.36 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDR---ATADLKNTNVRLKH 231 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~---~~~~l~~~~~rl~~ 231 (265)
+.+..+...|...+++-..=-+.+-+-++-|++|++..+. ......+.-+++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444443332223344445555555554433 33334444444444
No 21
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.046 Score=49.42 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=63.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
.+.+|+++...|...|-.+..+=..|.+-|-.|..-||-|-+.+..++..+..+|..+.++...++.-+.|+
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~ 297 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFL 297 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHH
Confidence 455678888888888888888888999999999999999999999999999999999999887766656565
No 22
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.79 Score=39.60 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
..|+.=...|..+=.+|..-.+-+..|+-+|..+..+|-.+..++-..|.=|.++-.+
T Consensus 149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~k 206 (231)
T KOG3208|consen 149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIK 206 (231)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4566666777788888999999999999999999999999999999999999996655
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.13 Score=46.81 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=61.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLC 250 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~ 250 (265)
.........|.+|++.-..+..+-..=|+-|+.=..-...-.+.|+...+.++.|..- -++++++.++||++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~----qkkaRK~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKY----QKKARKWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhceeeeehHHHHH
Confidence 3556778889999999999988888888889888888888888899989998888443 455677777775554444
Q ss_pred HHHHH
Q 024570 251 IILGI 255 (265)
Q Consensus 251 vil~i 255 (265)
+++++
T Consensus 282 ~~v~v 286 (297)
T KOG0810|consen 282 IVVLV 286 (297)
T ss_pred HHHHh
Confidence 44443
No 24
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=95.49 E-value=0.36 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
..+.|+.-...+...-++|..+-.+|..|.+.|..+..+++.+...+..+++-|+.+-++
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 345788888899999999999999999999999999999999999999999999886543
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.49 Score=42.18 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 024570 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCID 245 (265)
Q Consensus 166 ~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~ 245 (265)
.++..+.+...-.++-+|...-..|+.+-..-|.-|+.=..-|+.+...+..++..|..++..=++ .++++.||++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Ll 265 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLL 265 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHH
Confidence 345556677888999999999999999999999999999999999999999999999999988776 4567888865
Q ss_pred HHHHHHHHHH
Q 024570 246 IVLLCIILGI 255 (265)
Q Consensus 246 i~ll~vil~i 255 (265)
+++++++|++
T Consensus 266 il~vv~lfv~ 275 (283)
T COG5325 266 ILLVVLLFVS 275 (283)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 26
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=94.62 E-value=0.68 Score=32.81 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 195 HDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 195 ~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
..+...++.+.+-++.++..-+.....+...+.++.++-. ..+|.+.++ +-.++.+++++++|
T Consensus 9 ~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~----n~kW~~r~i---iGaiI~~i~~~i~K 71 (71)
T PF10779_consen 9 NRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS----NTKWIWRTI---IGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHhC
Confidence 3445566667777888888888888888888888888443 235653322 22223344555554
No 27
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.51 E-value=0.6 Score=40.71 Aligned_cols=83 Identities=7% Similarity=0.095 Sum_probs=48.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSR-NFCIDIVLL 249 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~-~~ci~i~ll 249 (265)
..|++.-+-+..+++.|...-++-..| +.-+.+...+|.....++.++.+-... .++.+=-| ..|++|+++
T Consensus 192 kt~ael~qLfndm~~~V~eq~e~Vd~I-------~~~~~~~~~n~~~g~~h~d~AvksaRa-aRkkki~c~gI~~iii~v 263 (280)
T COG5074 192 KTMAELTQLFNDMEELVIEQQENVDVI-------DKNVEDAQENVEQGVGHTDKAVKSARA-ARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHH-------HhhHhhHHhhHHHhhhhHHHHHHHHHH-HHhcceehhhhHHHHHHH
Confidence 345555555555555555555554444 444556677777777777777777444 55666444 567565555
Q ss_pred HHHHHHHHHHHHH
Q 024570 250 CIILGIAAYLYNV 262 (265)
Q Consensus 250 ~vil~i~~vl~~~ 262 (265)
++.+++ .+++++
T Consensus 264 iv~vv~-~v~~~v 275 (280)
T COG5074 264 IVVVVF-KVVPFV 275 (280)
T ss_pred HHHHHh-cccchh
Confidence 555554 444443
No 28
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=1.6 Score=39.13 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 024570 165 FRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (265)
Q Consensus 165 ~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (265)
..++..+-+.+....+-++.+....|..|-..=|+-|+.=..-++.....|......|.+|.+.=++..+. ...-.|+
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~--~~~ll~v 251 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK--KCILLLV 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hhhhhHH
Confidence 34556667788889999999999999999999999999999999999999999999999998877665544 3776665
Q ss_pred HHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLY 260 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~ 260 (265)
.+++++++.++++.++
T Consensus 252 ~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 252 GGPVGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555444444445443
No 29
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=5.2 Score=35.18 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 164 ~~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
..+++|..-+...-..+..+.+.....++--..=|.-++....-+|.++..++++..++..+++ ++ ...+.++-..
T Consensus 145 qm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~---s~~~~~~~il 220 (235)
T KOG3202|consen 145 QMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MA---SQCSQWCAIL 220 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---ccccchhHHH
Confidence 3456666666666777777777766666666666777889999999999999999999999998 54 4678888666
Q ss_pred HHHHHHHHHHHH
Q 024570 244 IDIVLLCIILGI 255 (265)
Q Consensus 244 i~i~ll~vil~i 255 (265)
+++++++++++|
T Consensus 221 ~l~~~~~lvv~i 232 (235)
T KOG3202|consen 221 LLVGLLLLVVII 232 (235)
T ss_pred HHHHHHHHHHHH
Confidence 666665555555
No 30
>PHA02819 hypothetical protein; Provisional
Probab=91.41 E-value=0.3 Score=34.38 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
..|.++|+++++++++++++|..+|
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455455554444444455555554
No 31
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.19 E-value=8 Score=32.30 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 024570 196 DMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGI 255 (265)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i 255 (265)
.+.+|...++.-|.+++.+++.--+.|+.....+++=+- +|++.+++.++.+++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~l------r~~~g~i~~~~a~~l 170 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTL------RWLVGVIFGCVALVL 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 455666666666777777776666666665555555332 488666655554544
No 32
>PHA02844 putative transmembrane protein; Provisional
Probab=91.08 E-value=0.58 Score=33.32 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=12.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
..|.++|++++++++++++.|..||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455455544444444445544554
No 33
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=6.5 Score=35.42 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 163 SQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 163 ~~~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
..+.|+-...|+...-.+.+|++....|..|-..-|+-+..-....|+.+-.++.+++.|-.--.++.
T Consensus 219 ~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 219 DEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 34556666778889999999999999999999998988888899999999999999999988777764
No 34
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=90.32 E-value=3.8 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.281 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
-|+--+.+...+..+-+=+..+.+ |+...+-|.+-...+.+...++++..
T Consensus 12 v~~v~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 12 VEEVKNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444455555555555443 55555555555566655555555433
No 35
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=3.3 Score=37.41 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDI 246 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i 246 (265)
.+-.+...+.=+.+-+|.+....|..+-.+-|.=|+.-.--++...-.++.+...|..+.+-= ++++...+.|+++
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ----k~~~k~~~i~~L~ 289 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ----KRNKKMKVILMLT 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH----hcCCceEehHHHH
Confidence 444455556668888999999999999999999999999999999999999999998887654 4578889999999
Q ss_pred HHHHHHHHHHH
Q 024570 247 VLLCIILGIAA 257 (265)
Q Consensus 247 ~ll~vil~i~~ 257 (265)
+++|++|++++
T Consensus 290 l~ii~llvlli 300 (305)
T KOG0809|consen 290 LLIIALLVLLI 300 (305)
T ss_pred HHHHHHHHHHH
Confidence 99888777633
No 36
>PHA03054 IMV membrane protein; Provisional
Probab=90.04 E-value=0.48 Score=33.39 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.|.++|+++++++++++++|..+|
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455455555555555455555555
No 37
>PHA02650 hypothetical protein; Provisional
Probab=89.93 E-value=0.46 Score=34.26 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.|.++|+++++++++++++|..||
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444444444444445544444
No 38
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=88.54 E-value=4 Score=31.06 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|-++++.|.+.|..+.+.-.....|++.|++.|+-|...+...+.||..
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677788888888888888888888888888888777777776666654
No 39
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=87.47 E-value=7.9 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 199 EEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 199 ~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
+|.++-++-||+++++|+-|.+.+-.
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev~Q 40 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEVYQ 40 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35556667788888888888776643
No 40
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=11 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.363 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
+-|+-.+-+...|...-+=+.... ||++=.+-|..-...+.++..+|++-
T Consensus 37 QvdeVv~IMr~NV~KVlER~ekL~-~L~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 37 QVDEVVDIMRENVEKVLERGEKLD-ELDDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHhHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443 46666667777777777777777654
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.34 E-value=14 Score=31.81 Aligned_cols=40 Identities=8% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 192 NMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 192 ~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
+....|.++++.-+..+.+|+..-.+....+..+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555544444433
No 42
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=85.85 E-value=6.4 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
|..+=.+-||+++++|+.|++.+..
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Q 37 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788888888888877654
No 43
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=85.37 E-value=1.2 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024570 242 FCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~k 264 (265)
|.++++.++++++++++.|..+|
T Consensus 48 ~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 48 WIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44344444444443344444444
No 44
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.35 E-value=9.3 Score=33.71 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTN 226 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
|+.=...+|.=-..+.+...+|..-.
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666665543
No 45
>PHA02692 hypothetical protein; Provisional
Probab=83.75 E-value=2.2 Score=30.08 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=10.6
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVL-LCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~l-l~vil~i~~vl~~~~k 264 (265)
.|.+++++ +++++++++++|..+|
T Consensus 44 ~~~~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 44 PWTTVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45434443 4444444344444454
No 46
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=82.63 E-value=18 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHD 196 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~ 196 (265)
+......+.....|+.|..++..+..+..-
T Consensus 14 ~rLEendk~i~~~L~~Ik~gq~~qe~v~~k 43 (98)
T PF11166_consen 14 RRLEENDKTIFNKLDEIKDGQHDQELVNQK 43 (98)
T ss_pred HHHHHhhHHHHHHHHHHHHhHhhHHHHHHH
Confidence 344455556666677666666555444433
No 47
>PHA02975 hypothetical protein; Provisional
Probab=82.47 E-value=2.2 Score=29.95 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.|.++|++++.+++++++.|..+|
T Consensus 43 ~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 43 LSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444344444444
No 48
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=81.86 E-value=11 Score=27.02 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHD---MNEEVDRQVPLMDEIDTKVDRATADLK 223 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~---i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
-..+.-++.-|+..|.|...|..++.--.. ++..++.|..-|+.++..|...++-|.
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556678889999999999888887666 888889999999999888888777654
No 49
>PRK14762 membrane protein; Provisional
Probab=81.64 E-value=2.5 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 024570 244 IDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 244 i~i~ll~vil~i~~vl~~~~k 264 (265)
.|+++++.++++ ++++.+||
T Consensus 5 lw~i~iifligl-lvvtgvfk 24 (27)
T PRK14762 5 LWAVLIIFLIGL-LVVTGVFK 24 (27)
T ss_pred HHHHHHHHHHHH-HHHHHHHH
Confidence 344554444444 44444554
No 50
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=81.51 E-value=2.8 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
..|..-.+++++++.+++.||.+
T Consensus 10 ylc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 10 YLCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35766666666666666666654
No 51
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=80.99 E-value=13 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
|..+=.+-||+++++++-+++.+..
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344455677888888877776643
No 52
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=80.74 E-value=16 Score=26.29 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
|.++=.+-||+++++|+.|++.+..
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Q 40 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQ 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688888888888877654
No 53
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=79.88 E-value=2.4 Score=28.07 Aligned_cols=21 Identities=10% Similarity=0.138 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 024570 245 DIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~~k~ 265 (265)
+|.++|++.++++.++.++||
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444444444455556677775
No 54
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=79.40 E-value=22 Score=25.93 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh------------hhhcHHHHHHHHHHHHHHHHHHHHHH-hhccCCCH
Q 024570 34 DAFARLYGAVEADIEAALQKAESASNEKNRASV------------VALNAEIRRTKARLLEEVPKLQRLAI-KKVKGLST 100 (265)
Q Consensus 34 DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~------------~~~~~eir~~l~~l~~~l~~L~~~~~-~k~~~lt~ 100 (265)
+.|+...+++...|..+............+... .....+|......+...|..|+.... ....+.+.
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 579999999999999887665433322222211 11112333333444444455544421 12346788
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 024570 101 EELVARNDLVLALPDRIQAI 120 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l 120 (265)
.+..-|+..+..|..++.++
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887654
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=78.58 E-value=15 Score=38.02 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024570 72 EIRRTKARLLEEVPKLQRL 90 (265)
Q Consensus 72 eir~~l~~l~~~l~~L~~~ 90 (265)
+.++.++.+...+.+|+..
T Consensus 250 ~~~~~L~~v~~~~~~L~~~ 268 (806)
T PF05478_consen 250 ETKELLQNVNSSLKDLQEY 268 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 56
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=78.21 E-value=46 Score=29.06 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=6.1
Q ss_pred HHHHHhHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTK 214 (265)
Q Consensus 201 l~~Q~~lLd~l~~~ 214 (265)
...|+..++-|.+.
T Consensus 92 ~k~~~dF~~~Lq~~ 105 (230)
T PF03904_consen 92 EKVHNDFQDILQDE 105 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 57
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=53 Score=28.43 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCC-CchH--HHHHHHHHHH
Q 024570 181 DMISEGLDTLKNMAHDMNEEVDRQV-PLMDEIDT---KVDRATADLKNTNVRLKHTVTQLRSS-RNFC--IDIVLLCIIL 253 (265)
Q Consensus 181 d~l~~~v~~lk~~a~~i~~El~~Q~-~lLd~l~~---~vd~~~~~l~~~~~rl~~~~~~~~~~-~~~c--i~i~ll~vil 253 (265)
+.|..+-.+++. |..|..|-++-+ .+|.+|.. ...++.++|..+...+.+-.+.-++. +..| -+++.+++++
T Consensus 128 erLeRst~rl~d-s~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~ 206 (220)
T KOG1666|consen 128 ERLERSTDRLKD-SQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIAL 206 (220)
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 223333333332 36677664 45666777777776666644443322 1334 2344444444
Q ss_pred HHHHHHHHHhc
Q 024570 254 GIAAYLYNVLK 264 (265)
Q Consensus 254 ~i~~vl~~~~k 264 (265)
.++++++.++.
T Consensus 207 l~~~il~ilY~ 217 (220)
T KOG1666|consen 207 LVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 58
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=75.30 E-value=3.4 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k~ 265 (265)
.+|.++++++.+|+++++++|.++++
T Consensus 117 ~~~~i~~~i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 117 ISPTILLSIGGILLAICGGIYVVLRK 142 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554544555667777888887753
No 59
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.97 E-value=43 Score=26.58 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=50.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
..++.-+.||.+...+....++...|.+|+..=..=+.++..+++..+..+..--.+|..+
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557788888888889999999999998888888999999999888888888888764
No 60
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.44 E-value=24 Score=24.72 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024570 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
++.|+.|...+.-+-..-..+++.|..|...|+.|...+.....+|...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666677777777777777776666666554
No 61
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=73.02 E-value=37 Score=25.53 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhh-hcHHHHHHHHHHHHH-----------HHHHHHHHHhhccCCCH
Q 024570 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVA-LNAEIRRTKARLLEE-----------VPKLQRLAIKKVKGLST 100 (265)
Q Consensus 33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~~~-~~~eir~~l~~l~~~-----------l~~L~~~~~~k~~~lt~ 100 (265)
..+|+...+++...|..+.................. ...+++..+..+..+ |..|+.. .......+.
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~-~~~~~~~~~ 81 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE-NLENRASGS 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhhcccCC
Confidence 368999999999999888755432222111111111 112344444443333 3333333 111111234
Q ss_pred HHHHHHHHHHHHHHHHHHcccccc
Q 024570 101 EELVARNDLVLALPDRIQAIPDGT 124 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~ 124 (265)
.+-..|+.....|..++..+...+
T Consensus 82 ~~~r~~~~q~~~L~~~f~~~m~~f 105 (117)
T smart00503 82 ASDRTRKAQTEKLRKKFKEVMNEF 105 (117)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888776654443
No 62
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=72.68 E-value=12 Score=24.09 Aligned_cols=11 Identities=36% Similarity=0.938 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 024570 241 NFCIDIVLLCI 251 (265)
Q Consensus 241 ~~ci~i~ll~v 251 (265)
+||++.+++++
T Consensus 34 nfcliliclll 44 (52)
T PF04272_consen 34 NFCLILICLLL 44 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47764444333
No 63
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=72.47 E-value=1.5 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 024570 242 FCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~ 263 (265)
|..++.++|+++++.++.||++
T Consensus 65 li~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEE
Confidence 3333444444444434444543
No 64
>PRK00846 hypothetical protein; Provisional
Probab=72.43 E-value=34 Score=24.74 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNT 225 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~ 225 (265)
..++.|+.|...+.-+-..-..+++.|..|...|+.|...+.....+|+.+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777777777888888888888877777766666554
No 65
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=70.27 E-value=47 Score=26.32 Aligned_cols=91 Identities=10% Similarity=0.139 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhh-cHHHHHHHHHHHHHH-----------HHHHHHHHhh-ccCCCH
Q 024570 34 DAFARLYGAVEADIEAALQKAESASNEKNRASVVAL-NAEIRRTKARLLEEV-----------PKLQRLAIKK-VKGLST 100 (265)
Q Consensus 34 DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~~~~-~~eir~~l~~l~~~l-----------~~L~~~~~~k-~~~lt~ 100 (265)
+.|+...+++...|..+...............+... ..+++..+..+..+. ..|....... ... +.
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~-~s 80 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN-GS 80 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-Cc
Confidence 468888889988888887554332222222211111 234555554444444 3333331100 011 44
Q ss_pred HHHHHHHHHHHHHHHHHHccccccc
Q 024570 101 EELVARNDLVLALPDRIQAIPDGTA 125 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (265)
.+...|+..+..|..++......+.
T Consensus 81 ~~~r~~~~q~~~L~~~f~~~m~~fq 105 (151)
T cd00179 81 SVDRIRKTQHSGLSKKFVEVMTEFN 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888777655543
No 66
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=70.08 E-value=13 Score=23.94 Aligned_cols=11 Identities=36% Similarity=0.938 Sum_probs=5.5
Q ss_pred chHHHHHHHHH
Q 024570 241 NFCIDIVLLCI 251 (265)
Q Consensus 241 ~~ci~i~ll~v 251 (265)
+||++.+++++
T Consensus 34 nf~liliclll 44 (52)
T TIGR01294 34 NFCLILICLLL 44 (52)
T ss_pred HHHHHHHHHHH
Confidence 47764444333
No 67
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=69.99 E-value=6.7 Score=28.81 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.9
Q ss_pred HHHHHHHHHhc
Q 024570 227 VRLKHTVTQLR 237 (265)
Q Consensus 227 ~rl~~~~~~~~ 237 (265)
.+|..++.+++
T Consensus 20 DQL~qlVsrN~ 30 (84)
T PF06143_consen 20 DQLEQLVSRNR 30 (84)
T ss_pred HHHHHHHHhCh
Confidence 45555665544
No 68
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=69.90 E-value=1.1e+02 Score=31.78 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024570 207 LMDEIDTKVDRATADLKNTNVRL 229 (265)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl 229 (265)
+.+.++.-++........+....
T Consensus 300 ~~~~i~~l~~~~~~~~~~~~~~~ 322 (914)
T PRK11466 300 FSSEVSQLVDTIELRNQHGLAHL 322 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333333333
No 69
>PHA03386 P10 fibrous body protein; Provisional
Probab=68.49 E-value=30 Score=25.83 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
.+...-.+.-|...+.|...|..++.- .+-|+.|...|++++.+|+..++-|.
T Consensus 8 l~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 8 TQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 445556678899999999999999877 55699999999999999998887665
No 70
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=68.37 E-value=18 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.2
Q ss_pred hhhhhhHHHHHHHH
Q 024570 174 MKQDQGLDMISEGL 187 (265)
Q Consensus 174 ~~QD~~Ld~l~~~v 187 (265)
...+..||.|...+
T Consensus 29 ~~ins~LD~Lns~L 42 (83)
T PF03670_consen 29 AAINSMLDQLNSCL 42 (83)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 71
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=68.26 E-value=80 Score=28.42 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024570 74 RRTKARLLEEVPKLQRLAI 92 (265)
Q Consensus 74 r~~l~~l~~~l~~L~~~~~ 92 (265)
-..++.++.++.++++.+.
T Consensus 148 ~~~l~~l~~~~~~le~~l~ 166 (318)
T TIGR00383 148 FPLLENIEDELEELEDEII 166 (318)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456777888888877643
No 72
>PRK11637 AmiB activator; Provisional
Probab=67.96 E-value=1.1e+02 Score=29.12 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLR 237 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~ 237 (265)
+....|+.+...+..+...-.....++...+.-|+.+...+......+......++..+..+-
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666667777777777777777777777777777777777666653
No 73
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.07 E-value=37 Score=23.02 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
.+|.|+.-|+.|+..-..+..++. .+-.++..+...-.++|.||......+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 466777777777666666655554 344455556666666666666655443
No 74
>PRK02119 hypothetical protein; Provisional
Probab=66.33 E-value=44 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.++.|+.|...+.-+-..-..+++.|..|...||.|...+.....+|..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666777777777766666555555543
No 75
>PRK04325 hypothetical protein; Provisional
Probab=64.57 E-value=49 Score=23.57 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|+.|...+.-+-..-..+++.|..|...|+.|...+.....+|..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555566666666777777777666665555554443
No 76
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=64.31 E-value=39 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 216 DRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 216 d~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~vl~~~~k~ 265 (265)
+++-+-..+-++++..++..++ -|...+-.+.-.+.|+..+|.++||
T Consensus 48 ~kv~~W~~~k~k~~~~FV~RNk---~W~T~~S~~tS~isIL~LV~~~~KK 94 (100)
T PF06363_consen 48 DKVKSWVKNKMKSMLSFVERNK---AWFTVVSAVTSFISILLLVTKIFKK 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---hHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555667777776632 3554555555667777888888886
No 77
>PRK00736 hypothetical protein; Provisional
Probab=64.27 E-value=47 Score=23.25 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
|+.|...+.-+-..-..+++.|..|...|+.|...+.....++..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555566666677777777776666555555543
No 78
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.27 E-value=55 Score=24.07 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDR 203 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~ 203 (265)
+.+.-.+.+...+......+....+++..
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~ 34 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARD 34 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444445555555555444444444433
No 79
>PRK04406 hypothetical protein; Provisional
Probab=64.02 E-value=51 Score=23.59 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
.++.|+.|...+.-+-..-..+++.|-.|...|+.|...+.....+|.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666677777777776666655555443
No 80
>PHA03395 p10 fibrous body protein; Provisional
Probab=63.08 E-value=39 Score=24.98 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAH---DMNEEVDRQVPLMDEIDTKVDRATADL 222 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~---~i~~El~~Q~~lLd~l~~~vd~~~~~l 222 (265)
.....-++.-|..+|.|...|..++.-.- .+++.|+.|...|+.++..++..++-|
T Consensus 7 l~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 7 LLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 34455667888899999999999886653 677788888888888888888766544
No 81
>PF15106 TMEM156: TMEM156 protein family
Probab=62.60 E-value=9.1 Score=32.97 Aligned_cols=22 Identities=32% Similarity=0.553 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
.|.++ |+++++|.|++++|.+|
T Consensus 177 TWYvL-VllVfiflii~iI~KIl 198 (226)
T PF15106_consen 177 TWYVL-VLLVFIFLIILIIYKIL 198 (226)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 36644 44444444557888776
No 82
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=61.39 E-value=12 Score=26.60 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
.+|.-|+++++.+++++++++++|
T Consensus 43 ~~~~~~~~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 43 NKNFNWIILIISIIFVLIIVLLTF 66 (72)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888877776654
No 83
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=61.09 E-value=61 Score=23.89 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVD 202 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~ 202 (265)
.++.|+..|+.|+.....+..++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~ 48 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMK 48 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444443
No 84
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=60.83 E-value=3.7 Score=40.62 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIILGIAAYLYNV 262 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~ 262 (265)
.|++|.++++++++++++++|+
T Consensus 547 PWyVWL~i~~~li~~~~~l~~~ 568 (610)
T PF01601_consen 547 PWYVWLAIILALIAFALILLWC 568 (610)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555555554
No 85
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=60.38 E-value=74 Score=24.26 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDT--LKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~--lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
--+..|..+...+.. +.+.-....+.++.|++.|..+...+......|......|..+
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~i 93 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSI 93 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666663 3333333346666677777766666666655555555544443
No 86
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=60.25 E-value=77 Score=25.04 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=41.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 174 ~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
......|..|...|..|..+-..++...+....+=+.|+..++.+.........+|+.+-.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777776644456677777777777777777777776443
No 87
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=60.20 E-value=2.1e+02 Score=29.81 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 207 LMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
+.+.++.-++................+
T Consensus 300 ~~~~l~~l~~~~~~~~~~~~~~~~~~~ 326 (968)
T TIGR02956 300 LNTTVSQLVNAQNQRTEAAVSDLLMTL 326 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 88
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.11 E-value=66 Score=25.09 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=10.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
+..-+++-+++..++.++++|+.+
T Consensus 94 sg~~l~~~m~~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 94 SGISLLCWMAVFSLVAFFILWVWL 117 (118)
T ss_pred CCcchHHHHHHHHHHHHHHhheee
Confidence 344444444444444444444433
No 89
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=59.69 E-value=1.6e+02 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-chH
Q 024570 219 TADLKNTNVRLKHTVTQLRSSR-NFC 243 (265)
Q Consensus 219 ~~~l~~~~~rl~~~~~~~~~~~-~~c 243 (265)
...+..+.+--+.++.++++.+ .|+
T Consensus 242 ~~~lk~~dk~Ck~il~K~~~~~c~w~ 267 (469)
T PF10151_consen 242 DESLKECDKACKVILGKMSGSSCPWT 267 (469)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCchH
Confidence 3455666777777787776544 344
No 90
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.43 E-value=38 Score=27.07 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Q 024570 71 AEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIP 121 (265)
Q Consensus 71 ~eir~~l~~l~~~l~~L~~~~~~k~~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (265)
.|.+..+...+..+.+|+.. +..+..-|..|+.+++++.
T Consensus 83 ~e~qsli~~yE~~~~kLe~e------------~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 83 QEQQSLIKTYEIVVKKLEAE------------LRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777655 4444566666666666554
No 91
>PRK00295 hypothetical protein; Provisional
Probab=58.62 E-value=60 Score=22.68 Aligned_cols=46 Identities=4% Similarity=0.107 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
.|+.|...+.-+-..-..+++.|-.|...|+.|...+.....+|..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555666666667777777766666655555544
No 92
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=58.62 E-value=6.1 Score=35.56 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k~ 265 (265)
++.-+|+++-+++++++|.||+||.
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeEe
Confidence 4554555566666666888888874
No 93
>PHA02975 hypothetical protein; Provisional
Probab=58.49 E-value=26 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHh
Q 024570 228 RLKHTVTQLRSSR-NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 228 rl~~~~~~~~~~~-~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
-++.++....++. ++..|..+++++++++++.++++
T Consensus 26 vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 26 TIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred HHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444554433333 55677777777777766665554
No 94
>PHA02650 hypothetical protein; Provisional
Probab=57.71 E-value=27 Score=25.30 Aligned_cols=24 Identities=4% Similarity=0.070 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
++|.-|..++++++++++++++++
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSF 67 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH
Confidence 357788888888777777666654
No 95
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.83 E-value=68 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
+.|+.|...+.-+-..-..+++.|..|...|+.+...+.....+|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555556666666666666555554444433
No 96
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=55.91 E-value=90 Score=23.87 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=41.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVP-LMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDI 246 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~-lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i 246 (265)
.+.+.-.-+|.+.+.+..-...|..=..|+....+ .|.+....+..+.+.+....+..-.--..+=..+.||-+-
T Consensus 13 l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VG 88 (104)
T COG4575 13 LLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVG 88 (104)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 33444455666666666666666666666665543 6666666666665555444444433333332446798543
No 97
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=55.32 E-value=2.6e+02 Score=29.06 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024570 189 TLKNMAHDMNEEVDRQV 205 (265)
Q Consensus 189 ~lk~~a~~i~~El~~Q~ 205 (265)
.++..-..+++++..+.
T Consensus 361 ~ik~~l~~~~~~i~~~a 377 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQA 377 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444333
No 98
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=54.07 E-value=33 Score=21.08 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Q 024570 228 RLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNV 262 (265)
Q Consensus 228 rl~~~~~~~~~~~~~ci~i~ll~vil~i~~vl~~~ 262 (265)
+..+.+..+.+ .|.+.-+.. ++++++++-|.+
T Consensus 4 k~hkai~aYEr--~Wi~F~l~m-i~vFi~li~ytl 35 (38)
T PF09125_consen 4 KAHKAIEAYER--GWIAFALAM-ILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hHHHHHHHH-HHHHHHHHHHHH
Confidence 34444555443 365332222 223333455543
No 99
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=53.37 E-value=16 Score=20.29 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=4.3
Q ss_pred chHHHHHHHH
Q 024570 241 NFCIDIVLLC 250 (265)
Q Consensus 241 ~~ci~i~ll~ 250 (265)
.|..+++|++
T Consensus 5 ~FalivVLFI 14 (24)
T PF09680_consen 5 GFALIVVLFI 14 (24)
T ss_pred cchhHHHHHH
Confidence 4554444333
No 100
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=53.25 E-value=15 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=5.6
Q ss_pred chHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIIL 253 (265)
Q Consensus 241 ~~ci~i~ll~vil 253 (265)
.+.++++|+++++
T Consensus 7 gf~livVLFILLI 19 (26)
T TIGR01732 7 GFALIVVLFILLV 19 (26)
T ss_pred chHHHHHHHHHHH
Confidence 4554444433333
No 101
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=53.15 E-value=16 Score=26.56 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 024570 253 LGIAAYLY 260 (265)
Q Consensus 253 l~i~~vl~ 260 (265)
++++.++|
T Consensus 18 li~~~~~~ 25 (85)
T PF11337_consen 18 LIIGIYYF 25 (85)
T ss_pred HHHHHHHh
Confidence 34434444
No 102
>PRK11637 AmiB activator; Provisional
Probab=53.04 E-value=2e+02 Score=27.25 Aligned_cols=58 Identities=7% Similarity=0.127 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
..+..+...+..+..--.....+++....-|+.++..++.++..+.....++...-..
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555566666666666666777777776666666666664433
No 103
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.89 E-value=1.8e+02 Score=26.20 Aligned_cols=94 Identities=10% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh-------------------------hhhhcHHHHHHHHHHHHH
Q 024570 29 NVSGDDAFARLYGAVEADIEAALQKAESASNEKNRAS-------------------------VVALNAEIRRTKARLLEE 83 (265)
Q Consensus 29 ~~~~~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~-------------------------~~~~~~eir~~l~~l~~~ 83 (265)
+-...|.|.+++.-+.+.++.++-.-+-..+...++. ......-++.+++.+...
T Consensus 41 ~~d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~ 120 (338)
T KOG3647|consen 41 DNDEEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVR 120 (338)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Confidence 3345699999999998888877522111111111111 011112255566666666
Q ss_pred HHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHcccc
Q 024570 84 VPKLQRLAIKKVK--GLSTEELVARNDLVLALPDRIQAIPD 122 (265)
Q Consensus 84 l~~L~~~~~~k~~--~lt~~El~~R~~~v~~l~~~l~~l~~ 122 (265)
++.+...+..... .--..-|++|+.-+..++.+++.+..
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666432211 11123378899889888888877653
No 104
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.58 E-value=1.4e+02 Score=26.85 Aligned_cols=71 Identities=10% Similarity=0.345 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLR--SSRNFCIDIVL 248 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~--~~~~~ci~i~l 248 (265)
..|+.|-..|..+-.-......|++.-+.-|..+..+++.+..++..-+.-++.=++.+- +....+|.|+|
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 344444444444444444444555555555555666666666666555555544444332 22345666655
No 105
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.40 E-value=18 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 244 IDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 244 i~i~ll~vil~i~~vl~~ 261 (265)
+++..++.+|++++++|+
T Consensus 35 m~~lvI~~iFil~Vilwf 52 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWF 52 (94)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344445555555566665
No 106
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=50.77 E-value=14 Score=31.28 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024570 242 FCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~k 264 (265)
|.-.|||.+-++.|++|+|.+.|
T Consensus 163 FiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcc
Confidence 44444444444444444544444
No 107
>PHA02909 hypothetical protein; Provisional
Probab=50.76 E-value=25 Score=23.84 Aligned_cols=8 Identities=38% Similarity=0.932 Sum_probs=4.7
Q ss_pred CchHHHHH
Q 024570 240 RNFCIDIV 247 (265)
Q Consensus 240 ~~~ci~i~ 247 (265)
+.||+.+-
T Consensus 30 ntfcimvs 37 (72)
T PHA02909 30 NTFCIMVS 37 (72)
T ss_pred cchhHHHH
Confidence 46886443
No 108
>PHA03054 IMV membrane protein; Provisional
Probab=50.75 E-value=46 Score=23.59 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
++|.-|..++++++++++++++++
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~f 66 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIY 66 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH
Confidence 356788888888777766666654
No 109
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=50.71 E-value=43 Score=26.51 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHH
Q 024570 218 ATADLKNTNVRLKHTVTQLRSS-RNFCIDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 218 ~~~~l~~~~~rl~~~~~~~~~~-~~~ci~i~ll~vil~i~~vl~~ 261 (265)
+-..|+.=.+||.+++...+.+ ..|-++++++.+..++.++.|.
T Consensus 5 ~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~wL 49 (125)
T PF09771_consen 5 ACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHWL 49 (125)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 3567888889999999888754 3787666666666666666664
No 110
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=50.03 E-value=80 Score=25.01 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=45.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNM-------AHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~-------a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
.+.+....||.+.+.++.|-.. ...+-.-..+||.+|.+++.+.+..+..|+.-.-++..++..
T Consensus 46 lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~ 116 (177)
T PF12495_consen 46 LLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSD 116 (177)
T ss_pred HHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456677788888777776433 334444457899999999999999988888766666655544
No 111
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=49.99 E-value=15 Score=25.20 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHHHhhccCchhhhhccCCCCCcHHHHHHHH
Q 024570 12 SICKKYDKYDVEKQRETNVSGDDAFARLYGA 42 (265)
Q Consensus 12 ~~~~k~~~~~~~~~~~~~~~~~DpF~~v~~~ 42 (265)
+.++.| -.||++-++--. ++|||++|+..
T Consensus 26 a~L~ec-nMDpnea~qrLL-~qD~FheVk~k 54 (60)
T PF06972_consen 26 AMLKEC-NMDPNEAVQRLL-SQDPFHEVKSK 54 (60)
T ss_pred HHHHHh-CCCHHHHHHHHH-hcCcHHHHHHh
Confidence 456677 366665554222 46999998763
No 112
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=49.58 E-value=1.5e+02 Score=25.77 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 024570 247 VLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~~k~ 265 (265)
+++++++++++++|+.|||
T Consensus 274 ~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 274 IILGLMILVAILLYWWFKR 292 (292)
T ss_dssp --HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHHHheeC
Confidence 3344455555677777876
No 113
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=1.9e+02 Score=26.05 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=44.4
Q ss_pred hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 176 QDQGLDMISE---GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 176 QD~~Ld~l~~---~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
.++.|+.-.. .+..-+..|..--.+|.+|.+.|+.++..+|.....+..+-+.|..
T Consensus 74 ~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 74 AQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 3444443333 3445567788888899999999999999999999999999999887
No 114
>PRK15396 murein lipoprotein; Provisional
Probab=49.21 E-value=99 Score=22.37 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024570 215 VDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 215 vd~~~~~l~~~~~rl~~~~~~ 235 (265)
+..+...-.++|.||..+...
T Consensus 55 ~~~a~~eA~raN~RlDn~~~s 75 (78)
T PRK15396 55 VQAAKDDAARANQRLDNQATK 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555554443
No 115
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=49.18 E-value=1.1e+02 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATA 220 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~ 220 (265)
++|..+..|...-.....--..|.+-+..|+...+.++..+|....
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 4555566666666666666666777788888888887777777443
No 116
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=49.17 E-value=5.4 Score=27.74 Aligned_cols=20 Identities=35% Similarity=0.349 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024570 245 DIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~~k 264 (265)
.+.+++++++|++++|-|=|
T Consensus 19 Vvgll~ailLIlf~iyR~rk 38 (64)
T PF01034_consen 19 VVGLLFAILLILFLIYRMRK 38 (64)
T ss_dssp ------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555566665544
No 117
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=48.97 E-value=13 Score=36.36 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 208 MDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 208 Ld~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
|+.+++.++++.+.|+..++-|..+
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666667777777666653
No 118
>PHA02819 hypothetical protein; Provisional
Probab=48.83 E-value=52 Score=23.30 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=16.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
+++.-|..++++++.+++++++++
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Confidence 356678888877777766666554
No 119
>PRK00523 hypothetical protein; Provisional
Probab=48.69 E-value=28 Score=24.79 Aligned_cols=10 Identities=20% Similarity=-0.084 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 024570 245 DIVLLCIILG 254 (265)
Q Consensus 245 ~i~ll~vil~ 254 (265)
||++.++.|+
T Consensus 7 ~I~l~i~~li 16 (72)
T PRK00523 7 ALGLGIPLLI 16 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 120
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=48.51 E-value=24 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLYNV 262 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~ 262 (265)
.|+.++|++++++|+|.+
T Consensus 8 ~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666777754
No 121
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=48.39 E-value=65 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024570 164 QFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHD 196 (265)
Q Consensus 164 ~~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~ 196 (265)
.++..|..+|..|.+.+|.|+.+|+.|.+-...
T Consensus 82 ~Lm~rQN~mm~~qqqsidslsksvgklahkvdl 114 (121)
T PF10669_consen 82 SLMNRQNNMMKQQQQSIDSLSKSVGKLAHKVDL 114 (121)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455667778888889999999999998775443
No 122
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=48.15 E-value=1.5e+02 Score=24.20 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhccC
Q 024570 2 SVIDILTRVDSICKKYDKY 20 (265)
Q Consensus 2 ~~~~~~~r~~~~~~k~~~~ 20 (265)
++.-+.+|++.||.||..+
T Consensus 56 ~i~~LFkkLRlIYekCne~ 74 (150)
T PF11315_consen 56 TIKVLFKKLRLIYEKCNEN 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999764
No 123
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.00 E-value=2.4e+02 Score=30.84 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhccCchh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhHHH--hhhhhhhhhhhhcHHHHHHHHH
Q 024570 3 VIDILTRVDSICKKYDKYDVE-KQRETNVSGDDAFARLYGAVEADIEAALQKAESA--SNEKNRASVVALNAEIRRTKAR 79 (265)
Q Consensus 3 ~~~~~~r~~~~~~k~~~~~~~-~~~~~~~~~~DpF~~v~~~~~~~l~~l~~~~~~~--~~ernr~~~~~~~~eir~~l~~ 79 (265)
|.++-.|+++++.+. -+ ++++ + -.||..-+.+++..|+.++..+... ..+-.... .....++|+.++.
T Consensus 1173 l~~L~~rt~rl~~~A----~~l~~tG--v--~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l-~~~~~~lr~~l~~ 1243 (1758)
T KOG0994|consen 1173 LQELALRTHRLINRA----KELKQTG--V--LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQL-ASATESLRRQLQA 1243 (1758)
T ss_pred HHHHHHHHHHHHHHH----HHhhhcc--C--chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHH-HHHHHHHHHHHHH
Confidence 567778999999887 11 2332 1 2488888999998888887553210 00111111 1222567777777
Q ss_pred HHHHHHHHHHHHH
Q 024570 80 LLEEVPKLQRLAI 92 (265)
Q Consensus 80 l~~~l~~L~~~~~ 92 (265)
+.+.|..++..+.
T Consensus 1244 ~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1244 LTEDLPQEEETLS 1256 (1758)
T ss_pred HHhhhhhhhhhhh
Confidence 7777776666643
No 124
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.64 E-value=27 Score=27.55 Aligned_cols=10 Identities=30% Similarity=-0.001 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024570 252 ILGIAAYLYN 261 (265)
Q Consensus 252 il~i~~vl~~ 261 (265)
|++||++.|+
T Consensus 78 Ig~Illi~y~ 87 (122)
T PF01102_consen 78 IGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334344443
No 125
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=44.60 E-value=22 Score=32.10 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
.|.|-+++|+++.+++++||..|
T Consensus 260 Pcgiaalvllil~vvliiLYiWl 282 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWL 282 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666544
No 126
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=44.49 E-value=23 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024570 245 DIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~~k 264 (265)
|+++++++=++..++|+++.
T Consensus 25 W~~~i~~~P~iG~i~Yl~~g 44 (46)
T PF13396_consen 25 WLIVILFFPIIGPILYLIFG 44 (46)
T ss_pred HHHHHHHHHHHHHhheEEEe
Confidence 44444444555566666554
No 127
>PHA03240 envelope glycoprotein M; Provisional
Probab=44.12 E-value=22 Score=30.86 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIILGI 255 (265)
Q Consensus 241 ~~ci~i~ll~vil~i 255 (265)
.|+|+++++++|+|+
T Consensus 214 ~WIiilIIiIiIIIL 228 (258)
T PHA03240 214 AWIFIAIIIIIVIIL 228 (258)
T ss_pred hHHHHHHHHHHHHHH
Confidence 587777777665555
No 128
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=43.92 E-value=1.3e+02 Score=22.35 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=38.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
.++....|..|...|..|..+-..++...+.-..+=+.|+..++.+..........|+.+-.
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777665532344456666666666666666666665433
No 129
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=42.82 E-value=88 Score=22.48 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024570 206 PLMDEIDTKVDRATADLKNTNVR 228 (265)
Q Consensus 206 ~lLd~l~~~vd~~~~~l~~~~~r 228 (265)
+.|++|+......+-++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 58999999998888888776655
No 130
>PTZ00370 STEVOR; Provisional
Probab=42.67 E-value=25 Score=31.85 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
.|.|-.++|+++.+++++||..|
T Consensus 256 Pygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666666544
No 131
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.14 E-value=33 Score=24.29 Aligned_cols=6 Identities=0% Similarity=-0.225 Sum_probs=2.4
Q ss_pred HHHHHH
Q 024570 257 AYLYNV 262 (265)
Q Consensus 257 ~vl~~~ 262 (265)
+.-||+
T Consensus 19 ~~G~fi 24 (71)
T COG3763 19 IGGFFI 24 (71)
T ss_pred HHHHHH
Confidence 333444
No 132
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=40.76 E-value=15 Score=36.71 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=14.6
Q ss_pred cCCCchHHHHHH--HHHHHHHHHHHHHHhc
Q 024570 237 RSSRNFCIDIVL--LCIILGIAAYLYNVLK 264 (265)
Q Consensus 237 ~~~~~~ci~i~l--l~vil~i~~vl~~~~k 264 (265)
.+.+-|+|+.++ ++|+++|++++|++|.
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 344556644333 3444455567777653
No 133
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=40.35 E-value=2.9e+02 Score=26.86 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 024570 168 EYEMRKMKQDQGLDMISEGLDTL------KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRN 241 (265)
Q Consensus 168 ~q~~~~~~QD~~Ld~l~~~v~~l------k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~ 241 (265)
+....+.+...........+..+ +.....+..++. ...+.+...++...............-.........
T Consensus 115 e~~~~~~~~~~~~~~y~~~~~~l~~~~~~g~~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 191 (553)
T PRK15048 115 EMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQ---GMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQ 191 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024570 242 FCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~k 264 (265)
|.+++++++++++++++.|++.+
T Consensus 192 ~~~~i~~~~~~~~~~~~~~~i~~ 214 (553)
T PRK15048 192 WQLAVIALVVVLILLVAWYGIRR 214 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 134
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=39.90 E-value=29 Score=32.67 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q 024570 252 ILGIAAYLYNVL 263 (265)
Q Consensus 252 il~i~~vl~~~~ 263 (265)
+|+|.+++.|+|
T Consensus 313 lL~ig~~~gFv~ 324 (387)
T PF12751_consen 313 LLVIGFAIGFVF 324 (387)
T ss_pred HHHHHHHHHhhh
Confidence 333444444443
No 135
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=39.84 E-value=1.4e+02 Score=21.42 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
....+....|+.|...|..|+.+-..+-.....-...=.+|+.-++.+.........+|+.+-.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666778888888888887777666555522345555666666666666666666666433
No 136
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.52 E-value=71 Score=27.41 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLK 191 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk 191 (265)
.+-.+|.|+..=++..
T Consensus 120 ~~p~id~lskvkaqv~ 135 (217)
T KOG0859|consen 120 EHPEISKLAKVKAQVT 135 (217)
T ss_pred cCcchhHHHHHHHHHH
Confidence 3444666555443333
No 137
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.75 E-value=34 Score=31.20 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024570 245 DIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~~k 264 (265)
-|+.++||++|.+|+|.+|+
T Consensus 261 SiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445566776663
No 138
>PHA02414 hypothetical protein
Probab=38.39 E-value=1.7e+02 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.593 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024570 247 VLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~~k 264 (265)
++++|+-.++.|+|.+||
T Consensus 94 VfmivLGAvvtyVFs~fk 111 (111)
T PHA02414 94 VFMIVLGAVVTYVFSKFK 111 (111)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 445555556677777775
No 139
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.38 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024570 211 IDTKVDRATADLKNTNVRLKHTVTQLR 237 (265)
Q Consensus 211 l~~~vd~~~~~l~~~~~rl~~~~~~~~ 237 (265)
++..+.....++..--++|+.+=+.++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 345666666777777777777544443
No 140
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=38.21 E-value=3e+02 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 024570 103 LVARNDLVLALPDRIQAI 120 (265)
Q Consensus 103 l~~R~~~v~~l~~~l~~l 120 (265)
+.+-++.+..|+.++.+|
T Consensus 330 lv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555555544
No 141
>PHA03049 IMV membrane protein; Provisional
Probab=37.64 E-value=48 Score=23.19 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 024570 252 ILGIAAYLYNVL 263 (265)
Q Consensus 252 il~i~~vl~~~~ 263 (265)
+.++++++|.+-
T Consensus 12 VaIi~lIvYgiY 23 (68)
T PHA03049 12 VVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344446666553
No 142
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.22 E-value=1.7e+02 Score=21.72 Aligned_cols=52 Identities=12% Similarity=0.285 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 192 NMAHDMNEEVDRQ-VPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 192 ~~a~~i~~El~~Q-~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
.-+..+..-|+.. ..||++|+..-......|.....++..-+...++...||
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 468888888888888888887777777776654433333
No 143
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=36.74 E-value=1.3e+02 Score=19.95 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=36.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVR 228 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~r 228 (265)
+......+..|......++..-..=|.-|+.=..-++.....+.++..+|..+.+.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666666666666666677777777777777776654
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.86 E-value=2.3e+02 Score=22.74 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=46.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNE---EVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~---El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
..+......||.+...+...+.....-.. ..+.=++-|.-|++.++.+..+|..++.++..+-.+.
T Consensus 42 ~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 42 KKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777777777766655543 3445677788888888888888888888887755443
No 145
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=35.67 E-value=67 Score=31.44 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024570 196 DMNEEVDRQVPLMDEIDTKVDRATADLKNTNVR 228 (265)
Q Consensus 196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~r 228 (265)
+|+.||..=|.-|++-.+.+++.+.-|...+..
T Consensus 435 DIS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 435 DISSELGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345556666666666666666666666666653
No 146
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=35.26 E-value=37 Score=24.59 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 024570 242 FCIDIVLLCIIL 253 (265)
Q Consensus 242 ~ci~i~ll~vil 253 (265)
|-++|++++++|
T Consensus 7 ~ellIIlvIvll 18 (78)
T PRK00720 7 WHWLIVLAVVLL 18 (78)
T ss_pred HHHHHHHHHHHH
Confidence 443334433333
No 147
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.26 E-value=2.6e+02 Score=24.23 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRAT 219 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~ 219 (265)
+|-.=++.|+.+.....+..
T Consensus 156 dvl~rg~~l~~l~~~~s~l~ 175 (216)
T KOG0862|consen 156 DVLQRGEVLNALSSMASELS 175 (216)
T ss_pred HHHhhchHHHhhhhhhhccc
Confidence 34444555555554444433
No 148
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=52 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=5.6
Q ss_pred HHHHHHHHhc
Q 024570 255 IAAYLYNVLK 264 (265)
Q Consensus 255 i~~vl~~~~k 264 (265)
+++|+|+++.
T Consensus 22 fiavi~~ayr 31 (60)
T COG4736 22 FIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHhc
Confidence 3366666654
No 149
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=35.10 E-value=89 Score=30.82 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 024570 34 DAFARLYGAVEADIEAALQK 53 (265)
Q Consensus 34 DpF~~v~~~~~~~l~~l~~~ 53 (265)
-.|..+-=.+.-+..+|..+
T Consensus 195 ~~F~~lsL~f~~D~~TLe~R 214 (538)
T PF05781_consen 195 AEFLRLSLGFKCDRFTLEKR 214 (538)
T ss_pred HHHHHHHHHhhhhhhhHHHH
Confidence 45655555555555555444
No 150
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.03 E-value=6.6e+02 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
+..-..+|+.+++.+..+...+..++.++.++-+.
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777777777776666665443
No 151
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.95 E-value=75 Score=24.59 Aligned_cols=17 Identities=0% Similarity=0.120 Sum_probs=9.7
Q ss_pred HHHHHHhcCCCchHHHH
Q 024570 230 KHTVTQLRSSRNFCIDI 246 (265)
Q Consensus 230 ~~~~~~~~~~~~~ci~i 246 (265)
.+++.++-..+.|.+||
T Consensus 63 G~llD~~agTsPwglIv 79 (116)
T COG5336 63 GWLLDKFAGTSPWGLIV 79 (116)
T ss_pred HHHHHHhcCCCcHHHHH
Confidence 35666665555677433
No 152
>PRK04654 sec-independent translocase; Provisional
Probab=34.90 E-value=3e+02 Score=23.83 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024570 183 ISEGLDTLKNMAHDMNEEV 201 (265)
Q Consensus 183 l~~~v~~lk~~a~~i~~El 201 (265)
+...++.++.+...+.+|+
T Consensus 32 lGk~irk~R~~~~~vk~El 50 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQEL 50 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 153
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.70 E-value=55 Score=22.97 Aligned_cols=11 Identities=27% Similarity=0.464 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 024570 252 ILGIAAYLYNV 262 (265)
Q Consensus 252 il~i~~vl~~~ 262 (265)
+.++++++|.+
T Consensus 12 Vaii~lIlY~i 22 (68)
T PF05961_consen 12 VAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHH
Confidence 33444566654
No 154
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.56 E-value=2.8e+02 Score=23.26 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=55.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 168 EYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 168 ~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
.....+......|..+...+..|..-......+|.+.+..+..+.+.+...+-.+.....++.++=..+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566678888999999999999999999999999999999999999999999999999988865554
No 155
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=34.52 E-value=2.9e+02 Score=23.53 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLK----NMAHDMNEEVDRQVPLMDEID--TKVDRATADLKNTNVRLKHTVTQLRS 238 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk----~~a~~i~~El~~Q~~lLd~l~--~~vd~~~~~l~~~~~rl~~~~~~~~~ 238 (265)
......+..-|.+|..++..+..+- ++|..++ |+...-.+|..++ ..+.+.-.++..+..++..+......
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~-efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~ 83 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATE-EFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQAL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788887777777664 5666555 4777888888877 67888888899999999888877543
No 156
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=34.30 E-value=40 Score=24.11 Aligned_cols=7 Identities=43% Similarity=0.377 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 024570 242 FCIDIVL 248 (265)
Q Consensus 242 ~ci~i~l 248 (265)
|-++|++
T Consensus 7 ~elliIl 13 (73)
T PRK02958 7 WHWLIVL 13 (73)
T ss_pred HHHHHHH
Confidence 4433333
No 157
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.73 E-value=3.5e+02 Score=24.26 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
..++..|.+++.+...+..++.--...+.|+..=+.-|+.+.+.+-.=+..|..-.
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666655555544444433
No 158
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=33.71 E-value=1e+02 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLYN 261 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~ 261 (265)
|.+++|.++++++--||
T Consensus 19 ~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 55566666666555554
No 159
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.54 E-value=4.3e+02 Score=25.36 Aligned_cols=44 Identities=7% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 190 LKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 190 lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
+.+.=.....+++.=+..|++++.........-..-..+|.+++
T Consensus 78 ~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L 121 (420)
T COG4942 78 LEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121 (420)
T ss_pred HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444443333333334444443
No 160
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.48 E-value=1.5e+02 Score=21.11 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 203 RQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 203 ~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
.|..+|.++-..|++.+..+...++.|..+..
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~ 39 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINR 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544443
No 161
>CHL00038 psbL photosystem II protein L
Probab=33.34 E-value=62 Score=19.90 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLYN 261 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~ 261 (265)
|.+|+|.++++++--||
T Consensus 20 ~GLLlifvl~vlfssyf 36 (38)
T CHL00038 20 WGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666666555554
No 162
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.79 E-value=1.8e+02 Score=20.52 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
+..|...|++|++-|.+-+..+....++++.
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333
No 163
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=32.63 E-value=46 Score=28.24 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.-.-.|.-||+.|++++|+||.+|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhh
Confidence 345678889999999999999887
No 164
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.28 E-value=2.1e+02 Score=21.11 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
..-+.+..-|..|..-=..+.+||+....-...++..-..+..+|..++..++-++
T Consensus 32 ~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 32 RKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33366666666666666677778888777778888888888888888877777665
No 165
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.22 E-value=3.4e+02 Score=23.54 Aligned_cols=65 Identities=11% Similarity=0.254 Sum_probs=51.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
......|+.++.|...+...+..+......+++-..-|.-+...++++..++..+-.++..+=..
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 34446778888888888888888888888888888888888888888888888888887775444
No 166
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=32.14 E-value=14 Score=21.99 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhcC
Q 024570 253 LGIAAYLYNVLKK 265 (265)
Q Consensus 253 l~i~~vl~~~~k~ 265 (265)
|++.+..|.-|||
T Consensus 8 L~l~ga~f~~fKK 20 (33)
T PF10855_consen 8 LILGGAAFYGFKK 20 (33)
T ss_pred hhhhhHHHHHHHH
Confidence 3333455555554
No 167
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.11 E-value=1.8e+02 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
+..|...|+.|++-|..-+..+....++++.+..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 168
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=32.03 E-value=40 Score=24.61 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 024570 242 FCIDIVLL 249 (265)
Q Consensus 242 ~ci~i~ll 249 (265)
|-++|+++
T Consensus 7 ~elliIlv 14 (81)
T PRK04598 7 WQLLIIAV 14 (81)
T ss_pred HHHHHHHH
Confidence 43333333
No 169
>COG1470 Predicted membrane protein [Function unknown]
Probab=31.93 E-value=36 Score=32.94 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q 024570 249 LCIILGIAAYLYNVLKK 265 (265)
Q Consensus 249 l~vil~i~~vl~~~~k~ 265 (265)
+++++.| +.++||+||
T Consensus 494 ~Ii~~~v-~~L~fviRK 509 (513)
T COG1470 494 AIIVLVV-LGLIFVIRK 509 (513)
T ss_pred HHHHHHH-HHHHhhhHH
Confidence 3333444 455567765
No 170
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=31.57 E-value=12 Score=30.19 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024570 177 DQGLDMISEGLDTLKNMAHDMNEEV 201 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El 201 (265)
.+.++.+...+..+......|..+.
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~i~~~q 135 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKEIKDEQ 135 (183)
T ss_dssp -------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444443
No 171
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.22 E-value=87 Score=21.02 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 024570 240 RNFCIDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~ 261 (265)
+.|.+++++++|++++.++-++
T Consensus 29 rP~~Ll~~li~Vv~gl~llS~l 50 (55)
T PF11293_consen 29 RPWRLLIVLIVVVIGLGLLSRL 50 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3577666666666666554443
No 172
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=31.16 E-value=74 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k~ 265 (265)
..|.+|+.=++++++.++++|..+|+
T Consensus 100 ~t~~LW~~P~lll~~G~~~~~~~~rr 125 (126)
T TIGR03147 100 QTLLLWLLPVLLLLLAFVLLWRVRRR 125 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777776555555554667766664
No 173
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=31.01 E-value=62 Score=24.64 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=6.0
Q ss_pred HHHHHHHHHh
Q 024570 227 VRLKHTVTQL 236 (265)
Q Consensus 227 ~rl~~~~~~~ 236 (265)
.++.+.+++.
T Consensus 2 ~~~~k~~~~~ 11 (107)
T COG4537 2 KKMKKFLKHK 11 (107)
T ss_pred hhHHHHHHhc
Confidence 4566666664
No 174
>PRK04406 hypothetical protein; Provisional
Probab=30.85 E-value=2e+02 Score=20.50 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
-+..|...|++|++-|..-+..+....++++.+
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444444444443
No 175
>PHA02902 putative IMV membrane protein; Provisional
Probab=30.58 E-value=62 Score=22.52 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhc
Q 024570 251 IILGIAAYLYNVLK 264 (265)
Q Consensus 251 vil~i~~vl~~~~k 264 (265)
+++++.+++|.+.|
T Consensus 12 ~v~Ivclliya~Yr 25 (70)
T PHA02902 12 IVIIFCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334455555544
No 176
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.50 E-value=1.9e+02 Score=20.16 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcccc
Q 024570 97 GLSTEELVARNDLVLALPDRIQAIPD 122 (265)
Q Consensus 97 ~lt~~El~~R~~~v~~l~~~l~~l~~ 122 (265)
.+++.+-..=..-|..++.++..++.
T Consensus 50 ~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 50 SLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666555543
No 177
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=30.43 E-value=3.5e+02 Score=23.81 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHHHH
Q 024570 218 ATADLKNTNVRLKHTVTQLRSSR--NFCIDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 218 ~~~~l~~~~~rl~~~~~~~~~~~--~~ci~i~ll~vil~i~~vl~~ 261 (265)
...+|.....-++.+....+.+. .-.+|+++.+-.+||+..-|.
T Consensus 173 ~~~~L~~~~~dl~~lF~~vkkD~aDPSLiWvmistGg~IvltLTYV 218 (233)
T TIGR02878 173 KEEQLSLMRGDLKALFDGVKEDEADPSLLWVMISTGGIIVATLTYV 218 (233)
T ss_pred HHHHHHHHHHHHHHHHcccccCCCCcHHHHHHHHhhHHHHHHHhhh
Confidence 34455556666667666654322 333355555444444444443
No 178
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=30.35 E-value=1.5e+02 Score=22.70 Aligned_cols=13 Identities=23% Similarity=0.077 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHh
Q 024570 224 NTNVRLKHTVTQL 236 (265)
Q Consensus 224 ~~~~rl~~~~~~~ 236 (265)
.+++||-.+|+..
T Consensus 16 ~AMrRLl~~LRqs 28 (103)
T PF11027_consen 16 MAMRRLLNLLRQS 28 (103)
T ss_pred HHHHHHHHHHHHh
Confidence 4778888888763
No 179
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=3.8e+02 Score=23.41 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMA 194 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a 194 (265)
....+-|..||+|..+++..+..-
T Consensus 146 e~~~~Ld~kl~di~~~i~~i~~nl 169 (236)
T KOG3287|consen 146 ERTEQLDVKLDDIEDSIGTIKNNL 169 (236)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHH
Confidence 334456777778887777766543
No 180
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=29.60 E-value=53 Score=24.40 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q 024570 242 FCIDIVLLCII 252 (265)
Q Consensus 242 ~ci~i~ll~vi 252 (265)
|-++||++|++
T Consensus 7 ~eLlIIlvIvL 17 (89)
T PRK03554 7 WQLLIIAVIVV 17 (89)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 181
>PRK15396 murein lipoprotein; Provisional
Probab=29.59 E-value=2.2e+02 Score=20.58 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024570 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEI 211 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l 211 (265)
....+++...+..++.-+..-.+|...=|.-||.+
T Consensus 38 ~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 38 NAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666555655555555544
No 182
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.41 E-value=52 Score=24.85 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024570 242 FCIDIVLLCIILGIAAYLYNV 262 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~ 262 (265)
-++|+.++.++ .+++++|.+
T Consensus 62 ~iili~lls~v-~IlVily~I 81 (101)
T PF06024_consen 62 NIILISLLSFV-CILVILYAI 81 (101)
T ss_pred cchHHHHHHHH-HHHHHHhhh
Confidence 44444444333 343555543
No 183
>PF14992 TMCO5: TMCO5 family
Probab=29.36 E-value=4.3e+02 Score=23.91 Aligned_cols=51 Identities=8% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024570 166 RQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVD 216 (265)
Q Consensus 166 ~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd 216 (265)
.|+-..-...|..++..+.......+++..+-..++..=.+.|..|++..+
T Consensus 118 lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 118 LQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666888888888777777777777777777766666677766443
No 184
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=29.21 E-value=2.8e+02 Score=21.75 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=42.7
Q ss_pred HHHHHHHHhhccCchhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH---hHHHhh--hhhhhhhhhhcHHHHHHHHHHHH
Q 024570 8 TRVDSICKKYDKYDVEKQRETNVSGDDAFARLYGAVEADIEAALQK---AESASN--EKNRASVVALNAEIRRTKARLLE 82 (265)
Q Consensus 8 ~r~~~~~~k~~~~~~~~~~~~~~~~~DpF~~v~~~~~~~l~~l~~~---~~~~~~--ernr~~~~~~~~eir~~l~~l~~ 82 (265)
+|+..++|+|.++-......+...........+..+...+..+... ++.... .+-...+.....+|...+.....
T Consensus 16 r~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~ 95 (139)
T PF05615_consen 16 RPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKK 95 (139)
T ss_pred hhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888666443322211111234444444444444333211 111111 11222234455678888888888
Q ss_pred HHHHHHHHHHh
Q 024570 83 EVPKLQRLAIK 93 (265)
Q Consensus 83 ~l~~L~~~~~~ 93 (265)
++.+|+..+..
T Consensus 96 ~ie~lk~~L~~ 106 (139)
T PF05615_consen 96 EIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHH
Confidence 88888877543
No 185
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.89 E-value=87 Score=20.34 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024570 247 VLLCIILGIAAYLYNV 262 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~ 262 (265)
++.++++++++++|..
T Consensus 16 l~~~~~~Figiv~wa~ 31 (48)
T cd01324 16 LLYLALFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444555543
No 186
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=28.88 E-value=50 Score=30.41 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 024570 249 LCIILGIAAYLYNVL 263 (265)
Q Consensus 249 l~vil~i~~vl~~~~ 263 (265)
+|++++|++|+|.++
T Consensus 162 ii~l~vla~ivY~~~ 176 (318)
T PF06682_consen 162 IIFLLVLAFIVYSLF 176 (318)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445566554
No 187
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=28.84 E-value=1.1e+02 Score=20.30 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.4
Q ss_pred HHHHHHhc
Q 024570 257 AYLYNVLK 264 (265)
Q Consensus 257 ~vl~~~~k 264 (265)
+++++.+|
T Consensus 20 ~~f~Wavk 27 (51)
T TIGR00847 20 VAFLWSLK 27 (51)
T ss_pred HHHHHHHc
Confidence 33334544
No 188
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=28.67 E-value=2e+02 Score=27.33 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=9.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
+|+....++++.+++.++.++.+.|
T Consensus 185 Rw~~~~~lL~l~l~icl~~l~glar 209 (406)
T PF04906_consen 185 RWLAYLGLLILDLVICLLGLLGLAR 209 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3343333333333333333333333
No 189
>PHA02844 putative transmembrane protein; Provisional
Probab=28.35 E-value=89 Score=22.37 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
++.-|..++++++++++++++++
T Consensus 44 ~~~~~~~~ii~i~~v~~~~~~~f 66 (75)
T PHA02844 44 CSSSTKIWILTIIFVVFATFLTF 66 (75)
T ss_pred CChhHHHHHHHHHHHHHHHHHHH
Confidence 56677777777666666655554
No 190
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.22 E-value=1.1e+02 Score=19.93 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.6
Q ss_pred HHHHHHhc
Q 024570 257 AYLYNVLK 264 (265)
Q Consensus 257 ~vl~~~~k 264 (265)
.++||+.|
T Consensus 26 ~F~~F~~K 33 (54)
T PF06716_consen 26 VFIWFVYK 33 (54)
T ss_pred HHHHHHHH
Confidence 34444444
No 191
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=28.12 E-value=74 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.|.-+|+=|=-|-|+++++|++||
T Consensus 80 g~~~~imPlYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 80 GLMGQIMPLYTIGIVLFILYTLFK 103 (152)
T ss_pred chhhhHhHHHHHHHHHHHHHHHHH
Confidence 344344445555556667777776
No 192
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.99 E-value=93 Score=23.66 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=12.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 239 SRNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 239 ~~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.+.|-+++.++++++++-+.+++..|
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566555555555554444444443
No 193
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=27.99 E-value=84 Score=23.73 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=7.3
Q ss_pred CCchHHHHHHHHHHH
Q 024570 239 SRNFCIDIVLLCIIL 253 (265)
Q Consensus 239 ~~~~ci~i~ll~vil 253 (265)
.++|.|++.++++.+
T Consensus 49 WRN~GIli~f~i~f~ 63 (103)
T PF06422_consen 49 WRNFGILIAFWIFFI 63 (103)
T ss_pred hhhHHHHHHHHHHHH
Confidence 346775444444333
No 194
>PHA03231 glycoprotein BALF4; Provisional
Probab=27.84 E-value=2.1e+02 Score=30.02 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNE 199 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~ 199 (265)
.-++.|..-++-|..+|+.+|.
T Consensus 659 ~~~~gl~~~~~gLG~vGk~vg~ 680 (829)
T PHA03231 659 AFVRGLAEFMQGLGAVGKAVGN 680 (829)
T ss_pred HHHHHHHHHHhhhhhhchhhhh
Confidence 3444555555555555555544
No 195
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=27.83 E-value=4.8e+02 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 024570 77 KARLLEEVPKLQRL 90 (265)
Q Consensus 77 l~~l~~~l~~L~~~ 90 (265)
++.+..+++.|++.
T Consensus 148 lE~~~~~ld~ls~~ 161 (316)
T PRK11085 148 IENIYSDLEKLSRV 161 (316)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 196
>PRK00736 hypothetical protein; Provisional
Probab=27.81 E-value=2.1e+02 Score=19.87 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=8.9
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTL 190 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~l 190 (265)
.+.-|++.++.|+..|.++
T Consensus 13 klafqe~tie~Ln~~v~~Q 31 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555444444
No 197
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.79 E-value=2.2e+02 Score=24.46 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNM 193 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~ 193 (265)
+.|..+.+.|..+|.+
T Consensus 125 d~lskvkaqv~evk~v 140 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGV 140 (217)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 198
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.71 E-value=5.3e+02 Score=27.27 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------chHHHHH
Q 024570 182 MISEGLDTLKNMAHDM-NEEVDRQVPLMDE-IDTKVDRATADLKNTNVRLKHTVTQLRSSR------------NFCIDIV 247 (265)
Q Consensus 182 ~l~~~v~~lk~~a~~i-~~El~~Q~~lLd~-l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~------------~~ci~i~ 247 (265)
.+-.-+..+..++... ..|++.+.+.|++ ++..|-++...+..+..++..++.+.+.+. .+|+.++
T Consensus 718 ~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~~ct~lm 797 (980)
T KOG0980|consen 718 LLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILSACTALM 797 (980)
T ss_pred HHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHHHHHHHH
Confidence 4445555666666555 5566777776665 688899999999999999999999886321 3676665
Q ss_pred HHHHHHHHH
Q 024570 248 LLCIILGIA 256 (265)
Q Consensus 248 ll~vil~i~ 256 (265)
=.|..||..
T Consensus 798 ~aI~~Lv~a 806 (980)
T KOG0980|consen 798 EAIMALVKA 806 (980)
T ss_pred HHHHHHHHH
Confidence 555555553
No 199
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=27.49 E-value=20 Score=28.58 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDE 210 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~ 210 (265)
.-...++.....|..|...+-.+-+.+..-....+.
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444556666666666665555555554444444444
No 200
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.39 E-value=2.8e+02 Score=21.02 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 168 EYEMRKMKQDQGLDMISEGLDTL--KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 168 ~q~~~~~~QD~~Ld~l~~~v~~l--k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
.....+...|..|+.+...+..| +.--..+.-++. ++..++.....+++..++.+.-++++
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~-------el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELA-------ELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888877777 555555555544 44555555555555556666665554
No 201
>PF08320 PIG-X: PIG-X / PBN1; InterPro: IPR013233 Mammalian PIG-X and yeast PBN1 are essential components of glycosylphosphatidylinositol-mannosyltransferase I []. These enzymes are involved in the transfer of sugar molecules.; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane
Probab=27.36 E-value=58 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k~ 265 (265)
.|..++.+++++++++.++|.++|+
T Consensus 183 ~~V~~~T~~~~~lg~~~i~~~l~~~ 207 (207)
T PF08320_consen 183 DFVEIGTLLVVLLGFIWILWKLFKH 207 (207)
T ss_pred CEEhHHHHHHHHHHHHHHHHHHhCC
Confidence 3444778888899998999989874
No 202
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.35 E-value=3.6e+02 Score=22.27 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHh
Q 024570 193 MAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDIVLLCIILGIAAYLYNVL 263 (265)
Q Consensus 193 ~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i~ll~vil~i~~vl~~~~ 263 (265)
+-.+|+.|=..-......++.++..++.++......|+.-++. .+|=++=-++.+++++++++..++
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~----~K~~~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIES----LKWDTLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777888899999999999999988888887775 346544444555555555554443
No 203
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.99 E-value=3.9e+02 Score=22.58 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024570 170 EMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLK 223 (265)
Q Consensus 170 ~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~ 223 (265)
.......++.++++-..++..-+.+-+.+.+|.-=..-|..|++++|+.-.-|.
T Consensus 85 E~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 85 EEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677788888888888888888888888888888888888888777776
No 204
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=26.98 E-value=1.3e+02 Score=19.40 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 024570 242 FCIDIVLLCIILGI 255 (265)
Q Consensus 242 ~ci~i~ll~vil~i 255 (265)
|..+|.-+++++++
T Consensus 4 wlt~iFsvvIil~I 17 (49)
T PF11044_consen 4 WLTTIFSVVIILGI 17 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 44344333334433
No 205
>PRK04325 hypothetical protein; Provisional
Probab=26.66 E-value=2.4e+02 Score=20.00 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
.+..|...|++|++-|..-+..+....++++.
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333333
No 206
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=26.65 E-value=1.7e+02 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024570 215 VDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 215 vd~~~~~l~~~~~rl~~~~ 233 (265)
+++-..+.....++.++++
T Consensus 23 I~k~~~~~n~~kk~fkki~ 41 (104)
T PF12420_consen 23 IDKLKKDPNIDKKKFKKII 41 (104)
T ss_pred HHHHhhCCChhHHHHHHHH
Confidence 4444445555566666644
No 207
>PRK00295 hypothetical protein; Provisional
Probab=26.53 E-value=2.3e+02 Score=19.74 Aligned_cols=30 Identities=3% Similarity=0.052 Sum_probs=12.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
+..|...|++|++-|.+-+..+....++++
T Consensus 14 la~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 14 QAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 208
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.49 E-value=3.3e+02 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 198 NEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 198 ~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
+..+++|.++...+.++|..+...+......+.
T Consensus 74 d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 74 DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444444444444433333
No 209
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=26.43 E-value=2.6e+02 Score=20.37 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
.|-.|...|..|..+...+|.- .+-.++-+.|..-+..+..........|+.+
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666643 3333455555555555555555555555553
No 210
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=26.23 E-value=1.1e+02 Score=17.17 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024570 248 LLCIILGIAAYLYNV 262 (265)
Q Consensus 248 ll~vil~i~~vl~~~ 262 (265)
..++.++++++++..
T Consensus 4 ~~~v~~~L~~YL~~a 18 (25)
T PF09604_consen 4 GGIVAVALFVYLFYA 18 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444454555543
No 211
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=26.22 E-value=81 Score=32.67 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHHH
Q 024570 228 RLKHTVTQL--RSSRNFCIDIVLLCIILGIAAYLY 260 (265)
Q Consensus 228 rl~~~~~~~--~~~~~~ci~i~ll~vil~i~~vl~ 260 (265)
|++.+.-.- .+.+-+| ||+|++++|+|+++.-
T Consensus 46 R~kY~~Y~~CATSTRim~-Wilf~cvll~Iv~isc 79 (981)
T PF03408_consen 46 RCKYLCYLCCATSTRIMA-WILFVCVLLSIVLISC 79 (981)
T ss_pred hHHHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHH
Confidence 555543221 2344444 6666666655544443
No 212
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=26.15 E-value=1.3e+02 Score=19.28 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.5
Q ss_pred HHHHhc
Q 024570 259 LYNVLK 264 (265)
Q Consensus 259 l~~~~k 264 (265)
+++.+|
T Consensus 21 f~Wavk 26 (45)
T PF03597_consen 21 FLWAVK 26 (45)
T ss_pred HHHHHc
Confidence 334444
No 213
>PRK02119 hypothetical protein; Provisional
Probab=25.75 E-value=2.5e+02 Score=19.88 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 201 VDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 201 l~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
+..|...|++|++-|.+-+..+....++++.
T Consensus 18 la~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 18 IAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444444443333333
No 214
>COG4640 Predicted membrane protein [Function unknown]
Probab=25.57 E-value=1e+02 Score=29.31 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 024570 223 KNTNVRLKHTVTQL 236 (265)
Q Consensus 223 ~~~~~rl~~~~~~~ 236 (265)
..+++-+...+...
T Consensus 30 sqan~~tn~i~~tr 43 (465)
T COG4640 30 SQANKSTNEIIQTR 43 (465)
T ss_pred hhhhHHHHHHHHhh
Confidence 34455555555543
No 215
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.48 E-value=94 Score=19.19 Aligned_cols=17 Identities=35% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLYN 261 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~ 261 (265)
|.+|++.++++++--||
T Consensus 21 ~GlLlifvl~vLFssYf 37 (39)
T PRK00753 21 LGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 55666666666555554
No 216
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=25.33 E-value=1.4e+02 Score=18.16 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024570 247 VLLCIILGIAAYLYNV 262 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~ 262 (265)
..+-++.++++|+|..
T Consensus 12 n~lG~~~~~LIVlYH~ 27 (35)
T PF10215_consen 12 NFLGVAAMVLIVLYHF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555666644
No 217
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=25.29 E-value=61 Score=23.80 Aligned_cols=8 Identities=13% Similarity=-0.052 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 024570 242 FCIDIVLL 249 (265)
Q Consensus 242 ~ci~i~ll 249 (265)
|-++||++
T Consensus 7 ~ELLIIlv 14 (85)
T PRK01614 7 TKLLVVGI 14 (85)
T ss_pred HHHHHHHH
Confidence 33333333
No 218
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.27 E-value=2.6e+02 Score=22.72 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccc
Q 024570 71 AEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIPD 122 (265)
Q Consensus 71 ~eir~~l~~l~~~l~~L~~~~~~k~~~lt~~El~~R~~~v~~l~~~l~~l~~ 122 (265)
.+++..+..+..++..|...+..-...+|..|+ ...+..+..++..+..
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el---~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEEL---REEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH
No 219
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=24.79 E-value=1.5e+02 Score=25.17 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 024570 211 IDTKVDRATADL 222 (265)
Q Consensus 211 l~~~vd~~~~~l 222 (265)
||+.||..+-.+
T Consensus 51 ~Dd~vd~lE~~v 62 (214)
T PF06837_consen 51 LDDKVDKLETDV 62 (214)
T ss_pred HHHHHHHHhhhH
Confidence 344444444333
No 220
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=24.54 E-value=1.7e+02 Score=27.62 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhhccCch-hhhhccCCCCCcHHHHHHHH
Q 024570 2 SVIDILTRVDSICKKYDKYDV-EKQRETNVSGDDAFARLYGA 42 (265)
Q Consensus 2 ~~~~~~~r~~~~~~k~~~~~~-~~~~~~~~~~~DpF~~v~~~ 42 (265)
+++|++.|++...+.+.+..- ..+.-++.++.|-|..+...
T Consensus 164 ~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~ 205 (379)
T COG1775 164 KLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFA 205 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHH
Confidence 689999999999888755544 45556677778888777655
No 221
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.50 E-value=97 Score=26.83 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAA 257 (265)
Q Consensus 245 ~i~ll~vil~i~~ 257 (265)
+|.+||+|..+|+
T Consensus 136 IIAVLfLICT~Lf 148 (227)
T PF05399_consen 136 IIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 222
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=24.32 E-value=4e+02 Score=21.87 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNE 199 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~ 199 (265)
.-+.+..-..+|+++|..+.+
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666665543
No 223
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=24.31 E-value=2.3e+02 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024570 247 VLLCIILGIAAYLYNVL 263 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~~ 263 (265)
++.++.+++ ..+|+.+
T Consensus 47 ll~ilt~gi-~~i~w~~ 62 (75)
T PF14018_consen 47 LLSILTCGI-YSIYWAY 62 (75)
T ss_pred HHHHHHHHH-HHHHHHH
Confidence 333334444 3344443
No 224
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=24.26 E-value=1.1e+02 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhc
Q 024570 240 RNFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
..|.+|+.=++++++.++++|..+|
T Consensus 100 ~t~~LW~~P~~lll~g~~~~~~~~r 124 (126)
T PRK10144 100 QTLVLWALPVVLLLLMALILWRVRA 124 (126)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777655554544455655554
No 225
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.11 E-value=1.8e+02 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 024570 191 KNMAHDMNEEVDRQVPLMDEIDTKVD 216 (265)
Q Consensus 191 k~~a~~i~~El~~Q~~lLd~l~~~vd 216 (265)
+.+-..+..|+..|..-||+++..++
T Consensus 75 ~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 75 KKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444566788889999999988764
No 226
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.05 E-value=4.2e+02 Score=22.04 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
..+..+.+..++..|...+..+..+++.....|.++...+..-...+......+..++...
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~ 161 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGE 161 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 4466778888889999999999999999999999999999998888888888888887653
No 227
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.95 E-value=5.6e+02 Score=23.39 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
....+.++++..+..-...+...-...-.+......-+-.+.+..+....++..+..++.++-+.
T Consensus 71 ~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 71 KEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456677777777777777777777777777777777788888899999999999999885443
No 228
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=23.74 E-value=4.1e+02 Score=21.74 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Q 024570 188 DTLKNMAHDMN-EEVDRQVPLMDEIDTKVD 216 (265)
Q Consensus 188 ~~lk~~a~~i~-~El~~Q~~lLd~l~~~vd 216 (265)
..|.+.|..+| ...+.|...|+-.-+.++
T Consensus 108 e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~ 137 (170)
T PF09548_consen 108 EILLELGKSLGYSDREMQEKHIELYLEQLE 137 (170)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34555555553 345666666655444443
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.72 E-value=90 Score=29.56 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 024570 240 RNFCIDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 240 ~~~ci~i~ll~vil~i~~vl~~ 261 (265)
++|-.|++||+++..|+++.|+
T Consensus 368 ~~~~~~~~lL~~l~~I~~~~y~ 389 (398)
T KOG0771|consen 368 RKIPAWLALLFVLSYIIAYFYL 389 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3566676777776666666665
No 230
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.68 E-value=4.2e+02 Score=22.88 Aligned_cols=62 Identities=10% Similarity=0.275 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 175 KQDQGLDMISEGL-DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 175 ~QD~~Ld~l~~~v-~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
..++.|+.....- +.+...-..++.++..-+.-++.++..++.-..+|...-..|..++.++
T Consensus 175 ~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 175 RLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666655 7777777888888888889999999999999999988888888887764
No 231
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.36 E-value=18 Score=31.52 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 244 IDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 244 i~i~ll~vil~i~~vl~~ 261 (265)
+++++++++++..++.||
T Consensus 163 ll~lllv~l~gGGa~yYf 180 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYF 180 (218)
T ss_pred HHHHHHHHHhhcceEEEE
Confidence 334444444444444444
No 232
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=23.06 E-value=1.4e+02 Score=20.69 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 024570 249 LCIILGIAAYLYNVLK 264 (265)
Q Consensus 249 l~vil~i~~vl~~~~k 264 (265)
+++++-++.-+|+++|
T Consensus 10 l~ii~sL~saL~~l~k 25 (63)
T PF11137_consen 10 LAIIASLFSALFFLVK 25 (63)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333335555666665
No 233
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=23.05 E-value=82 Score=18.18 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=8.1
Q ss_pred CCCCcHHHHHHHHH
Q 024570 30 VSGDDAFARLYGAV 43 (265)
Q Consensus 30 ~~~~DpF~~v~~~~ 43 (265)
+++.|||...++-+
T Consensus 3 is~~d~f~eFY~rl 16 (28)
T PF12108_consen 3 ISGGDPFSEFYERL 16 (28)
T ss_dssp --S--HHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 45789999998754
No 234
>PRK09738 small toxic polypeptide; Provisional
Probab=22.94 E-value=91 Score=20.77 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIILG 254 (265)
Q Consensus 241 ~~ci~i~ll~vil~ 254 (265)
-||++++++-++++
T Consensus 9 ~~~livvCiTvL~f 22 (52)
T PRK09738 9 VWCVLIVCLTLLIF 22 (52)
T ss_pred hhhHHHHHHHHHHH
Confidence 46655544444333
No 235
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.92 E-value=5.5e+02 Score=22.91 Aligned_cols=8 Identities=13% Similarity=-0.242 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 024570 226 NVRLKHTV 233 (265)
Q Consensus 226 ~~rl~~~~ 233 (265)
..-|..+.
T Consensus 248 ~~Al~~L~ 255 (301)
T PF14362_consen 248 LEALWELT 255 (301)
T ss_pred HHHHHHHH
Confidence 44455544
No 236
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=22.89 E-value=3.1e+02 Score=22.55 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 024570 200 EVDRQVP 206 (265)
Q Consensus 200 El~~Q~~ 206 (265)
++..|.+
T Consensus 77 d~At~gE 83 (156)
T PF08372_consen 77 DVATQGE 83 (156)
T ss_pred HHHHHHH
Confidence 3444433
No 237
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.88 E-value=3.3e+02 Score=20.28 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
...+.++....|+..+..|+... .++..+-..||+|+..|+....-........+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777777654 56777888888888888765554444333333
No 238
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=22.84 E-value=2.3e+02 Score=18.58 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024570 189 TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (265)
Q Consensus 189 ~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
.++.--..+|.|++.|+...|++...-+.--+.|.-.+
T Consensus 12 aih~tydelgkei~~~g~~~d~i~kaqeeylsals~et 49 (58)
T PF13060_consen 12 AIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHET 49 (58)
T ss_pred HHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHH
Confidence 45566678899999999999988776665555554433
No 239
>PTZ00046 rifin; Provisional
Probab=22.62 E-value=4.4e+02 Score=24.78 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=7.7
Q ss_pred HHHHhhccCch
Q 024570 12 SICKKYDKYDV 22 (265)
Q Consensus 12 ~~~~k~~~~~~ 22 (265)
++|=+|+-|.|
T Consensus 39 R~LcECeLY~p 49 (358)
T PTZ00046 39 RLLCECELYSS 49 (358)
T ss_pred hhhhhhhcCCC
Confidence 56777877765
No 240
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=22.61 E-value=1.2e+02 Score=21.28 Aligned_cols=7 Identities=14% Similarity=0.429 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 024570 257 AYLYNVL 263 (265)
Q Consensus 257 ~vl~~~~ 263 (265)
+++|.++
T Consensus 41 ~l~~~~~ 47 (84)
T PF02790_consen 41 FLIYFLF 47 (84)
T ss_dssp HHHHHHH
T ss_pred ecccccc
Confidence 3333443
No 241
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=22.57 E-value=29 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 024570 244 IDIVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 244 i~i~ll~vil~i~~vl~~~~k~ 265 (265)
|+|-+|+.|.+|..++++++||
T Consensus 134 IIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 134 IIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp ----------------------
T ss_pred ehhhHHHHHHHHhheeeEEeeh
Confidence 4555555566666777777776
No 242
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.48 E-value=53 Score=20.75 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 024570 252 ILGIAAYLY 260 (265)
Q Consensus 252 il~i~~vl~ 260 (265)
+.++..++|
T Consensus 22 i~iva~~iY 30 (43)
T PF08114_consen 22 IGIVALFIY 30 (43)
T ss_pred HHHHHHHHH
Confidence 333334444
No 243
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.38 E-value=5.3e+02 Score=22.59 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024570 192 NMAHDMNEEVDRQVPLMDEIDTKVDR 217 (265)
Q Consensus 192 ~~a~~i~~El~~Q~~lLd~l~~~vd~ 217 (265)
+....++.|+..+..-++.+-+++-.
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666766666544444444433
No 244
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.19 E-value=2.5e+02 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 191 KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 191 k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
..-+...-.|+..-+.-|..|++.++++..+|..+..+|..
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~ 68 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEE 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 245
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=22.15 E-value=1.3e+02 Score=22.10 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=12.4
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 024570 232 TVTQLRSSRNFCIDIVLLCIILGIAAYL 259 (265)
Q Consensus 232 ~~~~~~~~~~~ci~i~ll~vil~i~~vl 259 (265)
++.+..+.+...+.+++++++|++++=+
T Consensus 16 i~~k~~~~s~li~~~LilfviF~~~L~~ 43 (83)
T PF05814_consen 16 IFDKNEGFSELIITLLILFVIFFCVLQV 43 (83)
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444433444444444445555543333
No 246
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=22.03 E-value=3.1e+02 Score=20.77 Aligned_cols=15 Identities=0% Similarity=0.111 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHh
Q 024570 222 LKNTNVRLKHTVTQL 236 (265)
Q Consensus 222 l~~~~~rl~~~~~~~ 236 (265)
......+++..+.+.
T Consensus 35 f~~iI~~IN~~l~~a 49 (118)
T PF10256_consen 35 FEEIINTINQILKEA 49 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555554
No 247
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=21.98 E-value=2e+02 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 024570 226 NVRLKHTVTQL 236 (265)
Q Consensus 226 ~~rl~~~~~~~ 236 (265)
..+|+.+....
T Consensus 12 ~~~Lr~~c~~L 22 (85)
T PF13150_consen 12 DDRLRRYCGRL 22 (85)
T ss_pred HHHHHHHHhcC
Confidence 34455544443
No 248
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.98 E-value=4.5e+02 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 180 LDMISEGLDTLKNMAHDMNEEVDRQ 204 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q 204 (265)
=+++.+..+.=+++|..+-.+....
T Consensus 43 Eeeii~~LG~P~~iA~~i~~~~~i~ 67 (181)
T PF08006_consen 43 EEEIIAELGSPKEIAREILAEYSIK 67 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHHhhhhh
Confidence 3667777777788888877765433
No 249
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=21.89 E-value=4.6e+02 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHH
Q 024570 77 KARLLEEVPKLQRLAIKKVKGLSTEEL 103 (265)
Q Consensus 77 l~~l~~~l~~L~~~~~~k~~~lt~~El 103 (265)
+..|...+.+..+++.. ..++++|.
T Consensus 50 iralT~t~~~a~~al~~--~~~~~~e~ 74 (232)
T PF09577_consen 50 IRALTETIEEAKKALTS--VSMSEEEK 74 (232)
T ss_pred HHHHHHHHHHHHHHHHc--cCCCHHHH
Confidence 44455555555555332 14666653
No 250
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=21.87 E-value=74 Score=32.12 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 024570 245 DIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~~k 264 (265)
+|+++.+++++++++..||+
T Consensus 394 ~~~f~~if~iva~ii~~~L~ 413 (807)
T KOG1094|consen 394 IIIFVAIFLIVALIIALMLW 413 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 251
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=21.85 E-value=1.1e+02 Score=17.31 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 024570 252 ILGIAAYLYN 261 (265)
Q Consensus 252 il~i~~vl~~ 261 (265)
.++++++++.
T Consensus 7 ~~~L~~YL~~ 16 (26)
T TIGR02115 7 AVGLFIYLFY 16 (26)
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 252
>PRK09759 small toxic polypeptide; Provisional
Probab=21.81 E-value=1.1e+02 Score=20.22 Aligned_cols=13 Identities=0% Similarity=0.306 Sum_probs=5.9
Q ss_pred chHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIIL 253 (265)
Q Consensus 241 ~~ci~i~ll~vil 253 (265)
-||++++++-+++
T Consensus 7 l~~liivCiTvL~ 19 (50)
T PRK09759 7 LLSLIVICFTLLF 19 (50)
T ss_pred HHHHHHHHHHHHH
Confidence 3565444444333
No 253
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=21.80 E-value=4.8e+02 Score=21.79 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Q 024570 241 NFCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~~~~k 264 (265)
.+..-+..++++++++..+|.++|
T Consensus 150 ~il~sv~~~f~i~~~i~~~yY~~K 173 (180)
T PHA02855 150 DILFSVINFFVIVGIIILLYYLLK 173 (180)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888888888887766
No 254
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.76 E-value=2.7e+02 Score=18.86 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024570 176 QDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDT 213 (265)
Q Consensus 176 QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~ 213 (265)
.-..++.|+.-|..++.=.....+|...-|.-||.+..
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 34567788888888888888888888888877776643
No 255
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=21.61 E-value=1e+02 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=14.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH
Q 024570 96 KGLSTEELVARNDLVLALPDRI 117 (265)
Q Consensus 96 ~~lt~~El~~R~~~v~~l~~~l 117 (265)
.++|.+++..|-.+=...-..+
T Consensus 26 ~GlSq~~vA~~l~l~~~~I~~i 47 (331)
T PRK10856 26 LGLTQQAVAERLCLKVSTVRDI 47 (331)
T ss_pred cCCCHHHHHHHHCCCHHHHHHH
Confidence 5899999888776543333333
No 256
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.50 E-value=1.6e+02 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 024570 241 NFCIDIVLLCIILGIAAYLY 260 (265)
Q Consensus 241 ~~ci~i~ll~vil~i~~vl~ 260 (265)
.+.-||+|+..++++.-++|
T Consensus 8 ~mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 8 RMTRIVLLISFIILFGRLIY 27 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34434444444444433444
No 257
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=6.9e+02 Score=26.30 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=51.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
+...-++.+||-++.++.+...++...-.....|+..++.....+.+.++-...+|+....+...+.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~ 726 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLL 726 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 4455678899999999999999998888888888888888777788777777777775544444433
No 258
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.40 E-value=2.6e+02 Score=27.03 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=49.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
..+..|+.....-+-+..--..++..+..-+.-+++++..++....++.....+|..++.++.+-..|.
T Consensus 389 ~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L 457 (462)
T PRK08032 389 QIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYL 457 (462)
T ss_pred HHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554444455555556788888888888899999999999999988888888888876544443
No 259
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.35 E-value=1.1e+03 Score=25.67 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh-----hhhhcHHHHHHHHHHHHHHHHHHHHHHhhccCC--CHHHHHH
Q 024570 33 DDAFARLYGAVEADIEAALQKAESASNEKNRAS-----VVALNAEIRRTKARLLEEVPKLQRLAIKKVKGL--STEELVA 105 (265)
Q Consensus 33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~-----~~~~~~eir~~l~~l~~~l~~L~~~~~~k~~~l--t~~El~~ 105 (265)
++||..+.++++.-.+.+...-........... ..+....+.+....=+..+.+|.+.+......+ +..+.++
T Consensus 733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek 812 (1174)
T KOG0933|consen 733 QNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEK 812 (1174)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCCCCCCCcccccCCCCCCCchhhccchhhHHHHHHHHHHHhhhhhhHHHHHH
Q 024570 106 RNDLVLALPDRIQAIPDGTAAAPKQSGGWGASASRTEIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMISE 185 (265)
Q Consensus 106 R~~~v~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~te~~~~~~q~q~~~~~~QD~~Ld~l~~ 185 (265)
|.+.+..+.-+++++..... .....+++-.......-..++.+..
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~-----------------------------------~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEIS-----------------------------------SLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 186 GLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
.|.....--..--.||..|...+-+++..+...-...........
T Consensus 858 kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 858 KVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh
No 260
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.00 E-value=5.6e+02 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=8.0
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 024570 198 NEEVDRQVPLMDEIDTKV 215 (265)
Q Consensus 198 ~~El~~Q~~lLd~l~~~v 215 (265)
..||+.-..-+..|++.|
T Consensus 175 ~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 175 RSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444444444
No 261
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.82 E-value=3.5e+02 Score=19.88 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 188 DTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 188 ~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
.+|-.....+-+.-..-+..|+.|+.+.|.....|-..++++.
T Consensus 40 ~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 40 VSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333455555556666667777777777776666666655553
No 262
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.57 E-value=2.8e+02 Score=22.90 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchH
Q 024570 220 ADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 220 ~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
-.+..+.++|+++.......+.|.
T Consensus 82 ~~~~ea~~~L~~I~~~~~~y~~~~ 105 (193)
T PF06738_consen 82 LSLEEAIERLDEIDREPPRYPPWL 105 (193)
T ss_pred CCHHHHHHHHHHHhhCCCCCCHHH
Confidence 344555666666554432344443
No 263
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.35 E-value=3e+02 Score=27.26 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024570 72 EIRRTKARLLEEVPKLQRL 90 (265)
Q Consensus 72 eir~~l~~l~~~l~~L~~~ 90 (265)
+.++.++.|...|.-|...
T Consensus 252 e~~e~~~kl~~~l~~l~~~ 270 (538)
T PF05781_consen 252 ESREIIQKLQKSLDVLHQC 270 (538)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 264
>PRK10404 hypothetical protein; Provisional
Probab=20.29 E-value=3.9e+02 Score=20.17 Aligned_cols=6 Identities=0% Similarity=-0.291 Sum_probs=3.4
Q ss_pred CchHHH
Q 024570 240 RNFCID 245 (265)
Q Consensus 240 ~~~ci~ 245 (265)
+.|..+
T Consensus 79 ~Pw~av 84 (101)
T PRK10404 79 KPWQGI 84 (101)
T ss_pred CcHHHH
Confidence 467743
No 265
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.13 E-value=7.3e+02 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 024570 249 LCIILGIAAYLYNVLK 264 (265)
Q Consensus 249 l~vil~i~~vl~~~~k 264 (265)
++||++|.+++|.+|+
T Consensus 319 IvvIVLIMvIIYLILR 334 (353)
T TIGR01477 319 ILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444467777764
Done!