Query 024570
Match_columns 265
No_of_seqs 189 out of 1080
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 7.8E-18 2.7E-22 123.1 9.5 75 165-239 6-80 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.6 4.7E-16 1.6E-20 108.7 7.9 64 171-234 2-65 (65)
3 1n7s_D SNAP-25A; neuronal snar 99.6 9.8E-15 3.3E-19 102.2 8.0 61 173-233 5-65 (66)
4 1sfc_D Protein (SNAP-25B), pro 99.6 1.1E-14 3.8E-19 107.4 8.5 64 172-235 23-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.5 2.5E-14 8.7E-19 105.3 6.5 63 173-235 25-87 (87)
6 3b5n_D Protein transport prote 99.4 4E-13 1.4E-17 93.1 8.6 58 174-231 6-63 (64)
7 4dnd_A Syntaxin-10, SYN10; str 99.4 3.5E-12 1.2E-16 100.6 10.4 93 33-125 26-129 (130)
8 3hd7_B Syntaxin-1A; membrane p 99.3 1.8E-11 6.1E-16 93.9 12.0 72 172-243 15-86 (109)
9 2c5k_T Syntaxin TLG1, T-snare 99.2 1.8E-11 6.2E-16 91.3 6.8 89 32-125 4-92 (95)
10 1jth_B Syntaxin 1A; coiled-coi 98.7 2.1E-07 7.1E-12 66.7 9.9 71 173-243 5-75 (77)
11 2nps_B Syntaxin 13, vesicle-as 98.6 6.2E-07 2.1E-11 63.1 9.9 69 175-243 3-71 (71)
12 3b5n_B Protein SSO1; snare com 98.2 1.9E-05 6.6E-10 55.1 10.5 63 173-235 5-67 (69)
13 1sfc_B Protein (syntaxin 1A), 98.2 1.8E-05 6.2E-10 57.3 10.2 67 172-238 15-81 (83)
14 1dn1_B Syntaxin 1A, syntaxin b 98.1 2E-06 6.7E-11 75.7 4.1 208 32-243 29-265 (267)
15 1gl2_B Syntaxin 7; membrane pr 98.0 2.5E-05 8.7E-10 53.8 8.3 60 173-232 4-63 (65)
16 1n7s_B Syntaxin 1A; neuronal s 98.0 5.9E-05 2E-09 52.4 9.9 60 173-232 7-66 (68)
17 2xhe_B Syntaxin1; exocytosis, 97.6 9.3E-05 3.2E-09 65.2 6.2 67 172-238 211-277 (279)
18 3hd7_B Syntaxin-1A; membrane p 97.0 0.017 6E-07 43.5 12.2 77 167-247 17-93 (109)
19 3hd7_A Vesicle-associated memb 96.5 0.032 1.1E-06 40.7 10.0 13 205-217 32-44 (91)
20 1n7s_C SNAP-25A; neuronal snar 95.8 0.26 9E-06 34.8 11.7 62 171-232 13-77 (79)
21 3c98_B Syntaxin-1A; protein co 94.2 0.0064 2.2E-07 52.2 -0.6 73 172-244 206-278 (279)
22 1nhl_A Synaptosomal-associated 94.0 0.49 1.7E-05 30.8 8.4 47 185-231 7-53 (54)
23 3b5n_C Protein transport prote 93.3 1 3.5E-05 31.0 9.3 56 177-232 8-66 (70)
24 1l4a_C S-SNAP25 fusion protein 92.0 0.38 1.3E-05 34.3 5.9 60 172-231 18-80 (83)
25 1gl2_C VTI1B, vesicle transpor 91.2 1.4 4.7E-05 29.7 7.9 56 177-232 8-63 (65)
26 2nps_C Vesicle transport throu 90.5 3.4 0.00011 29.1 10.4 64 173-236 14-77 (81)
27 2kog_A Vesicle-associated memb 89.6 0.029 9.9E-07 43.0 -1.9 29 203-231 58-89 (119)
28 3hd7_A Vesicle-associated memb 80.3 14 0.00046 26.4 11.0 18 214-231 44-61 (91)
29 1fio_A SSO1 protein; four heli 79.8 1 3.5E-05 36.7 2.8 34 172-205 163-196 (196)
30 1ez3_A Syntaxin-1A; three heli 73.8 25 0.00084 26.0 10.0 93 33-125 7-112 (127)
31 3ghg_A Fibrinogen alpha chain; 67.2 39 0.0013 31.9 10.2 17 4-20 60-76 (562)
32 1fjk_A Cardiac phospholamban; 65.0 7.8 0.00027 24.0 3.5 9 241-249 34-42 (52)
33 1s94_A S-syntaxin; three helix 60.8 49 0.0017 26.1 8.8 90 35-125 40-143 (180)
34 1g6u_A Domain swapped dimer; d 60.7 20 0.0007 21.5 4.7 38 78-121 3-40 (48)
35 2d9d_A BAG family molecular ch 56.5 41 0.0014 23.6 6.4 70 7-91 9-79 (89)
36 3efg_A Protein SLYX homolog; x 56.2 37 0.0013 23.5 6.3 47 178-224 14-60 (78)
37 3j1r_A Archaeal adhesion filam 50.1 21 0.00071 19.3 3.1 9 253-261 17-25 (26)
38 2lk9_A Bone marrow stromal ant 49.7 17 0.00059 21.0 2.9 13 247-259 14-26 (35)
39 2lx0_A Membrane fusion protein 48.9 32 0.0011 18.9 3.8 22 242-264 6-27 (32)
40 1ssz_A Pulmonary surfactant-as 46.9 7.6 0.00026 21.9 1.1 20 4-23 5-24 (34)
41 1pi7_A VPU protein, U ORF prot 46.6 19 0.00065 21.2 2.9 18 245-262 7-24 (36)
42 1ic2_A Tropomyosin alpha chain 44.1 75 0.0026 21.8 10.6 54 179-232 21-74 (81)
43 2k1k_A Ephrin type-A receptor 41.4 34 0.0012 20.3 3.6 10 255-264 27-36 (38)
44 1jcd_A Major outer membrane li 39.7 72 0.0025 20.3 7.7 44 180-230 6-49 (52)
45 3nmd_A CGMP dependent protein 39.2 90 0.0031 21.3 6.7 30 200-229 34-63 (72)
46 2dnx_A Syntaxin-12; snare, HAB 37.8 1.3E+02 0.0043 22.6 8.2 58 33-90 9-66 (130)
47 3p8c_F ABL interactor 2; actin 36.1 1.6E+02 0.0054 23.2 8.5 52 179-230 55-106 (159)
48 1pfi_A Major coat protein of P 35.6 25 0.00086 21.3 2.3 20 246-265 26-45 (46)
49 1rh5_B Preprotein translocase 34.9 45 0.0016 22.9 3.8 26 215-240 5-30 (74)
50 2ks1_B Epidermal growth factor 34.0 41 0.0014 20.7 3.1 8 257-264 29-36 (44)
51 2rdd_B UPF0092 membrane protei 32.4 28 0.00097 20.3 2.2 6 257-262 14-19 (37)
52 1l4a_D S-SNAP25 fusion protein 31.7 1.3E+02 0.0045 20.9 6.6 58 167-224 26-83 (87)
53 3arc_L Photosystem II reaction 31.5 58 0.002 19.0 3.3 18 244-261 18-35 (37)
54 3efg_A Protein SLYX homolog; x 30.9 1.3E+02 0.0044 20.6 6.5 20 172-191 22-41 (78)
55 3swy_A Cyclic nucleotide-gated 30.5 66 0.0023 19.9 3.7 28 210-237 2-29 (46)
56 1yod_A Water-solublized phosph 30.1 46 0.0016 18.4 2.5 9 241-249 13-21 (30)
57 2kpa_A ARNO(375-400); hydrolas 29.7 20 0.00068 19.6 1.0 13 32-44 2-14 (26)
58 2l2t_A Receptor tyrosine-prote 28.4 53 0.0018 20.2 3.0 8 257-264 28-35 (44)
59 3mp7_B Preprotein translocase 28.4 71 0.0024 21.0 3.8 18 223-240 9-26 (61)
60 3fym_A Putative uncharacterize 28.0 12 0.00043 28.1 0.0 23 96-118 15-37 (130)
61 3ghg_A Fibrinogen alpha chain; 27.8 3.9E+02 0.013 25.2 15.0 24 67-90 56-79 (562)
62 2l6w_A Beta-type platelet-deri 33.7 13 0.00044 22.3 0.0 13 248-260 20-32 (39)
63 3u1c_A Tropomyosin alpha-1 cha 27.1 1.7E+02 0.0059 20.9 10.3 54 179-232 24-77 (101)
64 4ev6_A Magnesium transport pro 26.4 3.1E+02 0.011 23.6 12.6 14 77-90 173-186 (339)
65 3oja_A Leucine-rich immune mol 25.0 3.8E+02 0.013 24.1 11.9 62 172-233 422-483 (487)
66 2w1k_A Putative sortase; pilus 24.7 16 0.00053 31.2 0.0 23 242-264 225-247 (252)
67 3p8c_D Wiskott-aldrich syndrom 24.5 3.3E+02 0.011 23.4 8.4 35 202-236 46-80 (279)
68 2k48_A Nucleoprotein; viral pr 24.4 94 0.0032 22.7 4.1 28 98-125 72-99 (107)
69 4b6x_A AVRRPS4, avirulence pro 24.1 1.8E+02 0.0063 20.1 6.3 51 71-121 25-75 (90)
70 3a7p_A Autophagy protein 16; c 23.9 2.6E+02 0.0089 21.8 10.1 60 177-236 67-126 (152)
71 2ww9_B Protein transport prote 23.7 1.6E+02 0.0055 20.4 5.1 22 219-240 22-43 (80)
72 2lat_A Dolichyl-diphosphooligo 22.3 1.1E+02 0.0037 18.1 3.4 14 248-261 13-26 (37)
73 2l5g_B Putative uncharacterize 22.3 1.4E+02 0.0047 18.1 4.7 29 207-235 10-38 (42)
74 1gl2_B Syntaxin 7; membrane pr 21.6 1.7E+02 0.0059 18.9 7.9 54 173-226 11-64 (65)
75 1rkl_A Dolichyl-diphosphooligo 21.4 1.3E+02 0.0046 17.5 3.9 16 247-262 12-27 (36)
76 2l34_A TYRO protein tyrosine k 21.4 1.1E+02 0.0037 17.5 3.2 14 249-262 17-30 (33)
77 2iub_A CORA, divalent cation t 21.0 4.1E+02 0.014 23.1 10.4 16 75-90 195-210 (363)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=123.08 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024570 165 FRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSS 239 (265)
Q Consensus 165 ~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~ 239 (265)
.+|.|+.++++||+.||.|+.+|++||++|.+||+||+.||++||+|+++||++..+|..+++|+++++++.++.
T Consensus 6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999986654
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=4.7e-16 Score=108.67 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=53.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVT 234 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~ 234 (265)
++|++||+.||.|+.+|++||++|.+||+||+.||.+||+|+++||++..+|..+++|++++++
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3678999999999999999999999999999999999999999999999999999999998763
No 3
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.56 E-value=9.8e-15 Score=102.24 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=58.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
..+||+.|+.|+.+|++||++|..||+||+.||++||+|+.+||++..+|..+++|+++++
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 4589999999999999999999999999999999999999999999999999999999875
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.55 E-value=1.1e-14 Score=107.37 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=60.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
+.++||+.||.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 23 ~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 23 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4569999999999999999999999999999999999999999999999999999999998754
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.50 E-value=2.5e-14 Score=105.32 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=59.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
..+||+.||.|+.+|++||++|.+||.||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 448999999999999999999999999999999999999999999999999999999998753
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4e-13 Score=93.11 Aligned_cols=58 Identities=28% Similarity=0.382 Sum_probs=56.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 174 MKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 174 ~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
.+||+.|+.|+..+++||++|.+||+||+.||++||+|+.++|++..++..+++||.+
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999999999999999999999999976
No 7
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.36 E-value=3.5e-12 Score=100.63 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh------hhhhcHHHHHHHHHHHHHHHHHHHHHH--hh---ccCCCHH
Q 024570 33 DDAFARLYGAVEADIEAALQKAESASNEKNRAS------VVALNAEIRRTKARLLEEVPKLQRLAI--KK---VKGLSTE 101 (265)
Q Consensus 33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~------~~~~~~eir~~l~~l~~~l~~L~~~~~--~k---~~~lt~~ 101 (265)
.|||+.|++||+.+|..+..+...+...+..+. ......||++.|..++|+|.||++++. .+ .|+|++.
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~ 105 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAG 105 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHH
Confidence 699999999999999999988654443322111 122236899999999999999999953 22 4699999
Q ss_pred HHHHHHHHHHHHHHHHHccccccc
Q 024570 102 ELVARNDLVLALPDRIQAIPDGTA 125 (265)
Q Consensus 102 El~~R~~~v~~l~~~l~~l~~~~~ 125 (265)
|+.+|++||..++.++..|+..++
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.32 E-value=1.8e-11 Score=93.91 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=65.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
.+++.++.+..|..++..|+++..+|+..+.+|+++||.++.+|+.+...+..+++.+++..+..++.++|+
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 456788999999999999999999999999999999999999999999999999999999887776655444
No 9
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.22 E-value=1.8e-11 Score=91.33 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Q 024570 32 GDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVL 111 (265)
Q Consensus 32 ~~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~l~~~l~~L~~~~~~k~~~lt~~El~~R~~~v~ 111 (265)
+.|||++|++|+.++|..+.++... ++.++......|+.+.++.|+++|.||.+++.-.... ++.|+.+|+++|.
T Consensus 4 s~DPF~~V~~D~~~ql~~l~~~~~~----~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~ 78 (95)
T 2c5k_T 4 SEDPFQQVVKDTKEQLNRINNYITR----HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVK 78 (95)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHH----TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 4699999999999999999877432 2222222334799999999999999999995322223 9999999999999
Q ss_pred HHHHHHHccccccc
Q 024570 112 ALPDRIQAIPDGTA 125 (265)
Q Consensus 112 ~l~~~l~~l~~~~~ 125 (265)
.++.+++.|+..++
T Consensus 79 ~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 79 NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 10
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.66 E-value=2.1e-07 Score=66.66 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=59.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
+++..+.+..|..++..|+++..+|+.-|.+|+++||.++.+|+.+...+..++..|.+..+..++.++|+
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~ 75 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 45667889999999999999999999999999999999999999999999999999999888776666555
No 11
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.56 E-value=6.2e-07 Score=63.13 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=61.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 024570 175 KQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFC 243 (265)
Q Consensus 175 ~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~c 243 (265)
+-.+.+..|..++..|+++..+|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..++.++|+
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345788999999999999999999999999999999999999999999999999999988877777664
No 12
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.21 E-value=1.9e-05 Score=55.08 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=58.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
+++..+.+..|..++..|+++..+|+.-|.+|+++||.++.+|+.+...+..++..|.+..+.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678899999999999999999999999999999999999999999999999999997764
No 13
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.17 E-value=1.8e-05 Score=57.27 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRS 238 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~ 238 (265)
.+++..+.+..|..++..|+++..+|+.-|.+|+++||.++.+|+.+...+..++..|.+..+..++
T Consensus 15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 4556778899999999999999999999999999999999999999999999999999998776544
No 14
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.08 E-value=2e-06 Score=75.72 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh-hhhcHHHHHHHHHHHHH-----------HHHHHHHHHhh-ccCC
Q 024570 32 GDDAFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTKARLLEE-----------VPKLQRLAIKK-VKGL 98 (265)
Q Consensus 32 ~~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l~~l~~~-----------l~~L~~~~~~k-~~~l 98 (265)
..+.|+....++...|..+............+... .....+++..+..+..+ |..|+...... ...-
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~ 108 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 108 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 35889999999999998887664432222222111 11112344444444433 34443331110 1134
Q ss_pred CHHHHHHHHHHHHHHHHHHHcccccccCCC------------CCCCCCCCCCCCcccc--cCCCCCCCchhhccc--hhh
Q 024570 99 STEELVARNDLVLALPDRIQAIPDGTAAAP------------KQSGGWGASASRTEIK--FDSDGRFDDEYFQQT--EES 162 (265)
Q Consensus 99 t~~El~~R~~~v~~l~~~l~~l~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~t--e~~ 162 (265)
++.+..-|+..+..|..++..+...+.... +.-...|+.+....+. .. .|. ...|... ..+
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie-~g~--~~~f~q~~l~~~ 185 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLE-SGN--PAIFASGIIMDS 185 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH-TCS--SCTTTTTCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHh-CCc--HHHHHHHHHHhh
Confidence 557778889999999988877765544210 0000001000000000 00 010 0011100 001
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 024570 163 SQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNF 242 (265)
Q Consensus 163 ~~~~q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ 242 (265)
... +..-..+++..+.+..|..+|..|+++..+|+.-|.+|+++||.|+.+|+.+...+..++..|.+..+..++.++|
T Consensus 186 ~~~-~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk 264 (267)
T 1dn1_B 186 SIS-KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 264 (267)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 111 1122356677889999999999999999999999999999999999999999999999999999988887777665
Q ss_pred H
Q 024570 243 C 243 (265)
Q Consensus 243 c 243 (265)
.
T Consensus 265 ~ 265 (267)
T 1dn1_B 265 K 265 (267)
T ss_dssp -
T ss_pred c
Confidence 4
No 15
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.04 E-value=2.5e-05 Score=53.82 Aligned_cols=60 Identities=13% Similarity=0.330 Sum_probs=55.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
+++..+.+..|..++..|+++..+|+.-|.+|+++||.++..|+.+...+..++..|.+.
T Consensus 4 i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 4 MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999999874
No 16
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=98.02 E-value=5.9e-05 Score=52.38 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=56.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
+++..+.+..|..++..|+++..+|+.-|.+|+++||.++..|+.+...+..++..|.+.
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999874
No 17
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.57 E-value=9.3e-05 Score=65.22 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRS 238 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~ 238 (265)
.+++-.+.+..|..+|..|+++...|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..++
T Consensus 211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~ 277 (279)
T 2xhe_B 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES 277 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 4556788999999999999999999999999999999999999999999999999999997766544
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.97 E-value=0.017 Score=43.52 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCIDI 246 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci~i 246 (265)
++....+.+....+-+|++....+..+-..=|+-++.=..-++.....|+.+...|..+.+.=++ .++..+||+++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~----~rkk~~i~l~~ 92 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK----ARRKKIMIIIC 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcceehHHH
Confidence 45555667788899999999999999999999999999999999999999999999999866544 34456888544
Q ss_pred H
Q 024570 247 V 247 (265)
Q Consensus 247 ~ 247 (265)
+
T Consensus 93 ~ 93 (109)
T 3hd7_B 93 C 93 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.45 E-value=0.032 Score=40.67 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.7
Q ss_pred HhHHHHHHHHHHH
Q 024570 205 VPLMDEIDTKVDR 217 (265)
Q Consensus 205 ~~lLd~l~~~vd~ 217 (265)
++-||.|.++.+.
T Consensus 32 gekL~~L~~kt~~ 44 (91)
T 3hd7_A 32 DQKLSELDDRADA 44 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 3444444444443
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.78 E-value=0.26 Score=34.77 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 171 MRKMKQDQGLDMISEGLD---TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 171 ~~~~~QD~~Ld~l~~~v~---~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
.....+|+.++.+..++. .-.++|..+-.+|..|.+.|+.++..++.++..|..+.+.|+.+
T Consensus 13 ~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m 77 (79)
T 1n7s_C 13 RADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhh
Confidence 344456666666655554 56669999999999999999999999999999999999988774
No 21
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=94.23 E-value=0.0064 Score=52.20 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=51.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQLRSSRNFCI 244 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~~~~~~~ci 244 (265)
..++-.+.+..|...|..+.++...|..-+.+|+..++.|+..|+.+...+..++..+.+..+..++.++|.|
T Consensus 206 ~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~ 278 (279)
T 3c98_B 206 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 278 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3456668899999999999999999999999999999999999999999999999999998888777777763
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=93.99 E-value=0.49 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 185 EGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 185 ~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
..+....++|...-.+|..|.+.|+.++..+|..++.|..+.+.|..
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34556677888899999999999999999999999999999987753
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.25 E-value=1 Score=30.96 Aligned_cols=56 Identities=7% Similarity=0.121 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 177 DQGLDMISEGLD---TLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 177 D~~Ld~l~~~v~---~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
++.++.-...+. .-.+.|..--.+|..|++.|+.++..+|..+..++.+.++++.+
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344554444443 34447777777999999999999999999999999999999873
No 24
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=92.00 E-value=0.38 Score=34.33 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTL---KNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKH 231 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~l---k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~ 231 (265)
...-+++.++.....+.-. .+.|..--.+|..|++.|+.++..+|..+..|+.+.+.|..
T Consensus 18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777666655544 45788888899999999999999999999999988877654
No 25
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=91.23 E-value=1.4 Score=29.72 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
.+.|..-...+..-.++|..+-.+|..|.+-|......++.++..|..+.+-|+.+
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m 63 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence 34556666677788899999999999999999999999999999999999888764
No 26
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=90.48 E-value=3.4 Score=29.07 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=56.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
++.-.+.|..-...+..--++|..|-.+|..|-+-|......++.+++.+..+.+-|+.+.+.+
T Consensus 14 L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 14 LERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 3455567777888888899999999999999999999999999999999999999999988764
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=89.65 E-value=0.029 Score=43.01 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024570 203 RQVPLMDEIDTKVDRA---TADLKNTNVRLKH 231 (265)
Q Consensus 203 ~Q~~lLd~l~~~vd~~---~~~l~~~~~rl~~ 231 (265)
+-++-||+|.++.+.. .....+.-+++++
T Consensus 58 eRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 58 ERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp CCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555443 3334444444443
No 28
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=80.30 E-value=14 Score=26.43 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 214 KVDRATADLKNTNVRLKH 231 (265)
Q Consensus 214 ~vd~~~~~l~~~~~rl~~ 231 (265)
.+........+..+++++
T Consensus 44 ~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 44 ALQAGASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444455544
No 29
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=79.80 E-value=1 Score=36.66 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQV 205 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~ 205 (265)
.+++-++.+-.|..+|..|+++..+|+.-|.+|+
T Consensus 163 ~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 163 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667889999999999999999999987666653
No 30
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=73.78 E-value=25 Score=26.03 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh-hhhcHHHHHHHHH-----------HHHHHHHHHHHHHhh-ccCCC
Q 024570 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTKAR-----------LLEEVPKLQRLAIKK-VKGLS 99 (265)
Q Consensus 33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l~~-----------l~~~l~~L~~~~~~k-~~~lt 99 (265)
.+.|+.-..++...|..+..........-.+... ......++..+.. +...|..|+...... ..+-+
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~ 86 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS 86 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3678888888888888887654432221111111 0111234444433 344444444331111 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHccccccc
Q 024570 100 TEELVARNDLVLALPDRIQAIPDGTA 125 (265)
Q Consensus 100 ~~El~~R~~~v~~l~~~l~~l~~~~~ 125 (265)
..+..-|+..+..|..++.++...++
T Consensus 87 s~~~Rir~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 87 SADLRIRKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999988766554
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.15 E-value=39 Score=31.87 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhccC
Q 024570 4 IDILTRVDSICKKYDKY 20 (265)
Q Consensus 4 ~~~~~r~~~~~~k~~~~ 20 (265)
+|+-+||+.|..+|+.|
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 68899999999999544
No 32
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=64.98 E-value=7.8 Score=24.04 Aligned_cols=9 Identities=44% Similarity=1.228 Sum_probs=4.7
Q ss_pred chHHHHHHH
Q 024570 241 NFCIDIVLL 249 (265)
Q Consensus 241 ~~ci~i~ll 249 (265)
+||++.+++
T Consensus 34 nfclilicl 42 (52)
T 1fjk_A 34 NFCLILIFL 42 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 477644433
No 33
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=60.81 E-value=49 Score=26.12 Aligned_cols=90 Identities=8% Similarity=0.135 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhh-hhhcHHHHHHH-----------HHHHHHHHHHHHHHHhhc--cCCCH
Q 024570 35 AFARLYGAVEADIEAALQKAESASNEKNRASV-VALNAEIRRTK-----------ARLLEEVPKLQRLAIKKV--KGLST 100 (265)
Q Consensus 35 pF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~-~~~~~eir~~l-----------~~l~~~l~~L~~~~~~k~--~~lt~ 100 (265)
.|+....++...|..+............+... ......++..+ ..+...|..|+.. .... .+-++
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~-~~~~~~~~~~s 118 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN-IEQEEHSNKSS 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCc
Confidence 47777788888888886554332221111110 11112333333 3444444444444 2111 13445
Q ss_pred HHHHHHHHHHHHHHHHHHccccccc
Q 024570 101 EELVARNDLVLALPDRIQAIPDGTA 125 (265)
Q Consensus 101 ~El~~R~~~v~~l~~~l~~l~~~~~ 125 (265)
.+..-|+..+..|..++..+...++
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq 143 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYN 143 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998877665
No 34
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=60.71 E-value=20 Score=21.50 Aligned_cols=38 Identities=34% Similarity=0.454 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Q 024570 78 ARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIP 121 (265)
Q Consensus 78 ~~l~~~l~~L~~~~~~k~~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (265)
..+..+|+.|++. +++|+|+..-..-+..+...+..++
T Consensus 3 aalkselqalkke------gfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 3 AALKSELQALKKE------GFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHT------TCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555544 7778777666666666665555444
No 35
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.48 E-value=41 Score=23.62 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhccCchh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhcHHHHHHHHHHHHHHH
Q 024570 7 LTRVDSICKKYDKYDVE-KQRETNVSGDDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVP 85 (265)
Q Consensus 7 ~~r~~~~~~k~~~~~~~-~~~~~~~~~~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~l~~~l~ 85 (265)
|.+++.|++|.....++ ...++. .|+|.-...+++..+-.+-+. ...-|++||.+-...--+++
T Consensus 9 i~~Ie~v~~r~r~l~~ell~~~~~---s~~yl~~k~eLq~Li~~LDev------------~~~~NpcIReaRRrAV~EvQ 73 (89)
T 2d9d_A 9 ILKIEKVLKRMREIKNELLQAQNP---SELYLSSKTELQGLIGQLDEV------------SLEKNPCIREARRRAVIEVQ 73 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCSCT---TTHHHHHHHHHHHHHHHHGGG------------CSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc---hHHHhhhHHHHHHHHHHHhhc------------ccCCChHHHHHHHHHHHHHH
Confidence 44555666666444443 333322 599988888776555443221 12345678877766666666
Q ss_pred HHHHHH
Q 024570 86 KLQRLA 91 (265)
Q Consensus 86 ~L~~~~ 91 (265)
.|-..+
T Consensus 74 ~lit~l 79 (89)
T 2d9d_A 74 TLITYI 79 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.19 E-value=37 Score=23.46 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 178 QGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
+.|+.|...+.-+-..-..+++.|..|...||.|...+.....++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444444444455555666666666666666555555544
No 37
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=50.12 E-value=21 Score=19.32 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 024570 253 LGIAAYLYN 261 (265)
Q Consensus 253 l~i~~vl~~ 261 (265)
-.+++++|+
T Consensus 17 aaVllylW~ 25 (26)
T 3j1r_A 17 AAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 334455553
No 38
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=49.72 E-value=17 Score=21.03 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 024570 247 VLLCIILGIAAYL 259 (265)
Q Consensus 247 ~ll~vil~i~~vl 259 (265)
+++++.+++.+++
T Consensus 14 LLviV~LgV~LI~ 26 (35)
T 2lk9_A 14 LLIIVILGVPLII 26 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhcchheE
Confidence 3344444443333
No 39
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=48.89 E-value=32 Score=18.93 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024570 242 FCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~k 264 (265)
|- .|.-++.++-++++-|+.||
T Consensus 6 we-viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 6 WE-VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH
Confidence 44 34455666666677777765
No 40
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=46.87 E-value=7.6 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhccCchh
Q 024570 4 IDILTRVDSICKKYDKYDVE 23 (265)
Q Consensus 4 ~~~~~r~~~~~~k~~~~~~~ 23 (265)
|-+|+|+++++-||++..|.
T Consensus 5 r~likriqa~ipk~grmlpq 24 (34)
T 1ssz_A 5 RALIKRIQAMIPKGGRMLPQ 24 (34)
T ss_dssp HHHHHHHHHHCSSSCCCCHH
T ss_pred HHHHHHHHHHccccchhhHH
Confidence 67899999999999887663
No 41
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=46.56 E-value=19 Score=21.22 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 245 DIVLLCIILGIAAYLYNV 262 (265)
Q Consensus 245 ~i~ll~vil~i~~vl~~~ 262 (265)
.++-+++++++.+++|.+
T Consensus 7 ~ivalivalIiaIVVWti 24 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSI 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666777754
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.12 E-value=75 Score=21.79 Aligned_cols=54 Identities=9% Similarity=0.203 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
.++.....+.....-+.....||..-+.-+..+++++|++..+|..++.+|...
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555567778899999999999999999999999999999999873
No 43
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=41.42 E-value=34 Score=20.25 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=4.4
Q ss_pred HHHHHHHHhc
Q 024570 255 IAAYLYNVLK 264 (265)
Q Consensus 255 i~~vl~~~~k 264 (265)
+++.+||+++
T Consensus 27 i~~l~~~~~r 36 (38)
T 2k1k_A 27 LLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHee
Confidence 3344444444
No 44
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.67 E-value=72 Score=20.29 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 180 LDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
++.|+..|..|...-..+..++. .+..++..+...-.++|.||.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~-------al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDAN-------AARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 44455555544444444444333 233345556666666666654
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.20 E-value=90 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 200 EVDRQVPLMDEIDTKVDRATADLKNTNVRL 229 (265)
Q Consensus 200 El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl 229 (265)
||..+..+|++++..++.-...+..-...+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 46
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.80 E-value=1.3e+02 Score=22.58 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 024570 33 DDAFARLYGAVEADIEAALQKAESASNEKNRASVVALNAEIRRTKARLLEEVPKLQRL 90 (265)
Q Consensus 33 ~DpF~~v~~~~~~~l~~l~~~~~~~~~ernr~~~~~~~~eir~~l~~l~~~l~~L~~~ 90 (265)
...|..+...+...|..+...........+.-.+..-+.++|+.+..+.....+|-+.
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ 66 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKE 66 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999998887553321211111112334578888888887777766444
No 47
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=36.10 E-value=1.6e+02 Score=23.21 Aligned_cols=52 Identities=6% Similarity=0.179 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLK 230 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~ 230 (265)
.-..|...+-.+..+|..+-+-|+.|..-+..++..|......+.-=..++.
T Consensus 55 a~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKva 106 (159)
T 3p8c_F 55 TTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVA 106 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999988877655444443
No 48
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=35.64 E-value=25 Score=21.34 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 024570 246 IVLLCIILGIAAYLYNVLKK 265 (265)
Q Consensus 246 i~ll~vil~i~~vl~~~~k~ 265 (265)
|+-.++|+.++..+|-|++|
T Consensus 26 IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 26 IVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455566666788888764
No 49
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=34.92 E-value=45 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024570 215 VDRATADLKNTNVRLKHTVTQLRSSR 240 (265)
Q Consensus 215 vd~~~~~l~~~~~rl~~~~~~~~~~~ 240 (265)
++...+.++.-.+...++++..++++
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPd 30 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPT 30 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444555556677777766554
No 50
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.03 E-value=41 Score=20.67 Aligned_cols=8 Identities=0% Similarity=-0.155 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 024570 257 AYLYNVLK 264 (265)
Q Consensus 257 ~vl~~~~k 264 (265)
+.+|+.++
T Consensus 29 ~~~~~~~R 36 (44)
T 2ks1_B 29 LGIGLFMR 36 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44444443
No 51
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=32.45 E-value=28 Score=20.34 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.6
Q ss_pred HHHHHH
Q 024570 257 AYLYNV 262 (265)
Q Consensus 257 ~vl~~~ 262 (265)
+++||+
T Consensus 14 ~ifYFl 19 (37)
T 2rdd_B 14 LIFYFM 19 (37)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 52
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.68 E-value=1.3e+02 Score=20.94 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024570 167 QEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKN 224 (265)
Q Consensus 167 q~q~~~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~ 224 (265)
++|...+.+.-..+..|......+..=-..=+.-|+.=+.-.|.++..+..++.++..
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444443333333334444445555566666666666554
No 53
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=31.55 E-value=58 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024570 244 IDIVLLCIILGIAAYLYN 261 (265)
Q Consensus 244 i~i~ll~vil~i~~vl~~ 261 (265)
+|.++++.++++++--||
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 355666666666555554
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.94 E-value=1.3e+02 Score=20.63 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=9.8
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLK 191 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk 191 (265)
.+.-|++.++.|+..|.++.
T Consensus 22 klAfqE~tIeeLn~~v~~Qq 41 (78)
T 3efg_A 22 RLSFQEQALTELSEALADAR 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.55 E-value=66 Score=19.93 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024570 210 EIDTKVDRATADLKNTNVRLKHTVTQLR 237 (265)
Q Consensus 210 ~l~~~vd~~~~~l~~~~~rl~~~~~~~~ 237 (265)
+++++|++..+.|....-|+.+++..+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665543
No 56
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=30.09 E-value=46 Score=18.38 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=4.5
Q ss_pred chHHHHHHH
Q 024570 241 NFCIDIVLL 249 (265)
Q Consensus 241 ~~ci~i~ll 249 (265)
+||++.+++
T Consensus 13 NfcLilICl 21 (30)
T 1yod_A 13 NRCLREICQ 21 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 477544433
No 57
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=29.72 E-value=20 Score=19.57 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=9.0
Q ss_pred CCcHHHHHHHHHH
Q 024570 32 GDDAFARLYGAVE 44 (265)
Q Consensus 32 ~~DpF~~v~~~~~ 44 (265)
+.|||+++...-+
T Consensus 2 s~dPFYdml~~RK 14 (26)
T 2kpa_A 2 SVDPFYEMLAARK 14 (26)
T ss_dssp CSHHHHHHHTCTH
T ss_pred CcchHHHHHHHHH
Confidence 3599999875433
No 58
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.44 E-value=53 Score=20.16 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=3.1
Q ss_pred HHHHHHhc
Q 024570 257 AYLYNVLK 264 (265)
Q Consensus 257 ~vl~~~~k 264 (265)
+..|+.++
T Consensus 28 ~~~~~~~R 35 (44)
T 2l2t_A 28 LTFAVYVR 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33344433
No 59
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=28.44 E-value=71 Score=20.99 Aligned_cols=18 Identities=0% Similarity=-0.032 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 024570 223 KNTNVRLKHTVTQLRSSR 240 (265)
Q Consensus 223 ~~~~~rl~~~~~~~~~~~ 240 (265)
..-.+.-.++++..++++
T Consensus 9 ~~f~kd~~rvlk~~~KPd 26 (61)
T 3mp7_B 9 RHFWKESRRAFLVTKKPN 26 (61)
T ss_dssp TTHHHHHTHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 333455566777766544
No 60
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=27.98 E-value=12 Score=28.08 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 024570 96 KGLSTEELVARNDLVLALPDRIQ 118 (265)
Q Consensus 96 ~~lt~~El~~R~~~v~~l~~~l~ 118 (265)
.++|.+|+..+-..=...-++++
T Consensus 15 ~gltq~elA~~~gis~~~is~iE 37 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIE 37 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 68999998887655444444444
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.78 E-value=3.9e+02 Score=25.18 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=14.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHH
Q 024570 67 VALNAEIRRTKARLLEEVPKLQRL 90 (265)
Q Consensus 67 ~~~~~eir~~l~~l~~~l~~L~~~ 90 (265)
...+..+...|+.|+..|.++.+.
T Consensus 56 dkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhh
Confidence 344455666666666666666444
No 62
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=33.67 E-value=13 Score=22.33 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 024570 248 LLCIILGIAAYLY 260 (265)
Q Consensus 248 ll~vil~i~~vl~ 260 (265)
++++.+++++++|
T Consensus 20 i~iisLIiLi~~w 32 (39)
T 2l6w_A 20 LTIISLIILIMLW 32 (39)
Confidence 3334444444444
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.10 E-value=1.7e+02 Score=20.86 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 179 GLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHT 232 (265)
Q Consensus 179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~ 232 (265)
..+.+...+.....-+.....||..-+.-+..+++.+|.+...|..++.++...
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777778888888888888888888888888888888777664
No 64
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.35 E-value=3.1e+02 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 024570 77 KARLLEEVPKLQRL 90 (265)
Q Consensus 77 l~~l~~~l~~L~~~ 90 (265)
+..+++++++|++.
T Consensus 173 l~~l~~~i~~lE~~ 186 (339)
T 4ev6_A 173 LMNLEDELEELEDK 186 (339)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.95 E-value=3.8e+02 Score=24.10 Aligned_cols=62 Identities=21% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 172 RKMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTV 233 (265)
Q Consensus 172 ~~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~ 233 (265)
+.++.....+.+..-.....+....+-+|=+.+.+.+++++..+..+...+..+..+=..+.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 44444444455555555566666666667778888888888888888888888877765543
No 66
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=24.74 E-value=16 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 024570 242 FCIDIVLLCIILGIAAYLYNVLK 264 (265)
Q Consensus 242 ~ci~i~ll~vil~i~~vl~~~~k 264 (265)
|.+.+++++++++|++++|..+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLAR 247 (252)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555566666554
No 67
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.47 E-value=3.3e+02 Score=23.39 Aligned_cols=35 Identities=6% Similarity=0.090 Sum_probs=23.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 202 DRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 202 ~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
..=+.+..+|..++..+..++.....|+..+-.+.
T Consensus 46 ~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 46 KYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777777777777777777777765554
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.36 E-value=94 Score=22.74 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHccccccc
Q 024570 98 LSTEELVARNDLVLALPDRIQAIPDGTA 125 (265)
Q Consensus 98 lt~~El~~R~~~v~~l~~~l~~l~~~~~ 125 (265)
+...-+.+|+.-|..+++++.+++..+.
T Consensus 72 vNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 72 VNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578999999999999999887654
No 69
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=24.14 E-value=1.8e+02 Score=20.15 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Q 024570 71 AEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELVARNDLVLALPDRIQAIP 121 (265)
Q Consensus 71 ~eir~~l~~l~~~l~~L~~~~~~k~~~lt~~El~~R~~~v~~l~~~l~~l~ 121 (265)
+++|..|.+-...++.|.+.+......-.|.|+..-.+++...+..+..+.
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~ 75 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQ 75 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 456655544444444443333322223456666666666666666665544
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.85 E-value=2.6e+02 Score=21.78 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024570 177 DQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTNVRLKHTVTQL 236 (265)
Q Consensus 177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~rl~~~~~~~ 236 (265)
...+..|......+..--.....|+...+..++.+.+.+...+-.+.....++.++-..+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888999999999999999999999999999999999988865544
No 71
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=23.72 E-value=1.6e+02 Score=20.39 Aligned_cols=22 Identities=0% Similarity=-0.139 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 024570 219 TADLKNTNVRLKHTVTQLRSSR 240 (265)
Q Consensus 219 ~~~l~~~~~rl~~~~~~~~~~~ 240 (265)
...+..-.+.-.++++..++++
T Consensus 22 ~e~~~~f~kd~~rvlk~~~KPd 43 (80)
T 2ww9_B 22 VEAPVEFVREGTQFLAKCKKPD 43 (80)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3344444444556676666554
No 72
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=22.31 E-value=1.1e+02 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 024570 248 LLCIILGIAAYLYN 261 (265)
Q Consensus 248 ll~vil~i~~vl~~ 261 (265)
.+-+..++++|+|.
T Consensus 13 ~lG~~~~~LIVlYH 26 (37)
T 2lat_A 13 MLGVSLFLLVVLYH 26 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444455554
No 73
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.31 E-value=1.4e+02 Score=18.08 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024570 207 LMDEIDTKVDRATADLKNTNVRLKHTVTQ 235 (265)
Q Consensus 207 lLd~l~~~vd~~~~~l~~~~~rl~~~~~~ 235 (265)
-+|.++...+.|..++..-.++++.+-+.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777888888888777777775443
No 74
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.55 E-value=1.7e+02 Score=18.92 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=40.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024570 173 KMKQDQGLDMISEGLDTLKNMAHDMNEEVDRQVPLMDEIDTKVDRATADLKNTN 226 (265)
Q Consensus 173 ~~~QD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~ 226 (265)
+.+....+-+|++....|..+-..=|.-|+.=..-++.....|..+...|..+.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345556677777777777777777777787777788888888888888887654
No 75
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=21.39 E-value=1.3e+02 Score=17.55 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024570 247 VLLCIILGIAAYLYNV 262 (265)
Q Consensus 247 ~ll~vil~i~~vl~~~ 262 (265)
..+-+..++++|+|..
T Consensus 12 n~lG~~~~~LIvlYH~ 27 (36)
T 1rkl_A 12 ITFGIVMMTLIVIYHA 27 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444566643
No 76
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=21.36 E-value=1.1e+02 Score=17.47 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024570 249 LCIILGIAAYLYNV 262 (265)
Q Consensus 249 l~vil~i~~vl~~~ 262 (265)
++..+++++.+|++
T Consensus 17 i~~t~~i~~~vy~~ 30 (33)
T 2l34_A 17 LVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhe
Confidence 33344444444444
No 77
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.04 E-value=4.1e+02 Score=23.08 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024570 75 RTKARLLEEVPKLQRL 90 (265)
Q Consensus 75 ~~l~~l~~~l~~L~~~ 90 (265)
..++.+.+++++|++.
T Consensus 195 ~~l~~l~~~id~lE~~ 210 (363)
T 2iub_A 195 VLLEKIDDEIDVLEEE 210 (363)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777777766
Done!