BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024571
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 330 bits (847), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 189/223 (84%), Gaps = 1/223 (0%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L Y+ F SKRSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKG 223
VLPNG AWIP+LV+TITEV LN S+++ VDK L++GPNPN++G
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRG 266
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 310 bits (794), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 150/214 (70%), Positives = 179/214 (83%), Gaps = 1/214 (0%)
Query: 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61
GKGGVGKSSTVNSIIGE+ V++S FQSEGPRPV VSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 46 GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYIND 105
Query: 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121
A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ
Sbjct: 106 XALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165
Query: 122 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 181
S PD L Y+ F SKRSEALL+ V + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 166 FSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
Query: 182 LPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
LPNG AWIP+LV+TITEV LN S+++ VDK L++
Sbjct: 225 LPNGIAWIPHLVQTITEVALNKSESIFVDKNLID 258
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 170/215 (79%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
+ A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L YE F SKRS++LLK + + M+K++ + S + VV ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
LPNG AWIPNLVK IT+V N KA+ VD +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 169/215 (78%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
+ A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+ AIT FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L YE F SKRS+ LLK + + M+K++ + S + VV ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
LPNG AWIPNLVK IT+V N KA+ VD +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 290 bits (741), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 137/215 (63%), Positives = 169/215 (78%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN
Sbjct: 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
+ A++LIK FL+N+TIDVLLYVDRLDVY VD LDKQ+ AIT FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L YE F SKRS++LLK + + M+K++ + S + VV ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
LPNG AWIPNLVK IT+V N KA+ VD +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/209 (64%), Positives = 166/209 (79%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+ GFT+NI+DTPGL+E GYVN
Sbjct: 41 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 100
Query: 61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
+ A++LIK FL+N+TIDVLLYVDRLDVY VD LDKQ+ AIT FG++IW + L+VLTHA
Sbjct: 101 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 160
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
Q S PD L YE F SKRS++LLK + + M+K++ + S + VV ENSGRC+KN+ DEK
Sbjct: 161 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 220
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLV 209
LPNG AWIPNLVK IT+V N KA+ V
Sbjct: 221 ALPNGEAWIPNLVKAITDVATNQRKAIHV 249
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 1 MGKGGVGKSSTVNSIIGEK-------AVTVSTFQSEGPR-----PVMVSRSRAGFTLNIV 48
+G+ G GKS+T NSI+G++ A +V+ + G R V V + F+ +
Sbjct: 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVS 86
Query: 49 DT-PGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFG 106
T PG E G+ +LL+ LL V +L R D+Q R + D FG
Sbjct: 87 KTDPGCEERGHC----------YLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFG 134
Query: 107 EQIWKRALIVLT 118
E + K +IV T
Sbjct: 135 EDVLKWMVIVFT 146
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+GK G GKS+T NSI+G K T +S + S S L +VDTPG+ +
Sbjct: 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94
Query: 60 NYHAIQLIKRFLL--NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
N + I R +L + LL V L Y + + + T I FGE+ +++
Sbjct: 95 NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKXFGERARSFXILIF 152
Query: 118 T 118
T
Sbjct: 153 T 153
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVN 60
G+ VGKSS +N+++G+ VS + PV S + +VDTPGL + G +
Sbjct: 41 GRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG 100
Query: 61 YHAIQLIKRFLLNKTIDVLL 80
++ +R +L+
Sbjct: 101 RLRVEKARRVFYRADCGILV 120
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 20/141 (14%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPV--MVSRSRAGF---TLNIVDTPGLI 54
+GK G GKS+ NSI+ ++A F+S+ G + + S+S+ + + I+DTP +
Sbjct: 8 VGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 62
Query: 55 ---EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 110
+ Y +Q + +LL+ VLL V +L Y + D+Q + + + FGE
Sbjct: 63 SWKDHCEALYKEVQ--RCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGEDAM 118
Query: 111 KRALIVLTHAQ-LSLPDRLDY 130
+++ TH + L+ +DY
Sbjct: 119 GHTIVLFTHKEDLNGGSLMDY 139
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 1 MGKGGVGKSSTVNSI---------IGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTP 51
+GK G GKS+ NSI +G + +T + +S+G S + I+DTP
Sbjct: 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG--------SWGNREIVIIDTP 79
Query: 52 GLI---EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE 107
+ + Y +Q + +LL+ VLL V +L Y + D+Q + + + FGE
Sbjct: 80 DMFSWKDHCEALYKEVQ--RCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGE 135
Query: 108 QIWKRALIVLTHAQ-LSLPDRLDY 130
+++ TH + L+ +DY
Sbjct: 136 DAMGHTIVLFTHKEDLNGGSLMDY 159
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
+G+ VGKSS VN+++GE+ V VS V S + IVDT G+ + G V
Sbjct: 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 20/141 (14%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPV--MVSRSRAGF---TLNIVDTPGLI 54
+GK G GKS+ NSI+ ++A F+S+ G + + S+S+ + + I+DTP +
Sbjct: 11 VGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 65
Query: 55 ---EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIW 110
+ Y +Q + +LL+ VLL V +L Y + D+Q + + + FGE
Sbjct: 66 SWKDHCEALYKEVQ--RCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGEDAM 121
Query: 111 KRALIVLTHAQ-LSLPDRLDY 130
+++ TH + L+ +DY
Sbjct: 122 GHTIVLFTHKEDLNGGSLMDY 142
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGL 53
+G+ VGKS+ +N ++G+K +++++ +++ R +V + + VDTPGL
Sbjct: 14 VGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGL 53
+G+ VGKS+ +N ++G+K +++++ +++ R +V + + VDTPGL
Sbjct: 11 VGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV- 59
+G+ VGKSS VN+ +GE+ V VS V S + IVDT G + G V
Sbjct: 181 IGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKVY 240
Query: 60 ----NYHAIQLIKRFLLNKTIDVLL 80
Y ++ +K ++ + V+L
Sbjct: 241 ETTEKYSVLRALKAIDRSEVVAVVL 265
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 21/132 (15%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPV--MVSRSRAGF---TLNIVDTPGLI 54
+GK G GKS+ NSI+ ++A F+S+ G + + S+S+ + + I+DTP
Sbjct: 28 VGKTGTGKSAAGNSILRKQA-----FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDXF 82
Query: 55 EGGYVNYHAIQLIKR----FLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI 109
H L K +LL+ VLL V +L Y + D+Q + + + FGE
Sbjct: 83 S---WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT--SQDQQAAQRVKEIFGEDA 137
Query: 110 WKRALIVLTHAQ 121
+++ TH +
Sbjct: 138 XGHTIVLFTHKE 149
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF------TLNIVDTPGL 53
+GK VGKS+ +N+++G K +S PRP + G + VDTPGL
Sbjct: 13 VGKPNVGKSTLLNNLLGVKVAPIS------PRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 6 VGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
VGK+S N++ G K V+ + EG + G+T+N++D PG GY +
Sbjct: 16 VGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINLIDLPGTYSLGYSS 69
Query: 61 YHAIQLIKRFLLNKTIDVLLYV 82
++ + +LL D+++ V
Sbjct: 70 IDE-KIARDYLLKGDADLVILV 90
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 6 VGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
VGK+S N++ G K V+ + EG + G+T+N++D PG GY +
Sbjct: 16 VGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINLIDLPGTYSLGYSS 69
Query: 61 YHAIQLIKRFLLNKTIDVLLYV 82
++ + +LL D+++ V
Sbjct: 70 IDE-KIARDYLLKGDADLVILV 90
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 6 VGKSSTVNSIIGEKAVT-----VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
VGK+S N++ G K V+ + EG + G+T+N++D PG GY +
Sbjct: 16 VGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYTINLIDLPGTYSLGYSS 69
Query: 61 YHAIQLIKRFLLNKTIDVLLYV 82
++ + +LL D+++ V
Sbjct: 70 IDE-KIARDYLLKGDADLVILV 90
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 56
+G+ VGKS+ N ++ +K V + PV + G T +VDT G+ +
Sbjct: 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 1 MGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 50
+G+ G+GKS+ +NS+ G T Q E + V++ L IVDT
Sbjct: 9 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLLTIVDT 67
Query: 51 PGL 53
PG
Sbjct: 68 PGF 70
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 1 MGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 50
+G+ G+GKS+ +NS+ G T Q E + V++ L IVDT
Sbjct: 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLLTIVDT 95
Query: 51 PGL 53
PG
Sbjct: 96 PGF 98
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 1 MGKGGVGKSSTVNSII----------GEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT 50
+G+ G+GKS+ +NS+ G T Q E + V++ L IVDT
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-VLIKEGGVQLLLTIVDT 72
Query: 51 PGL 53
PG
Sbjct: 73 PGF 75
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61
G VGKSS +N I+ V V ++ + I+DTPGL++ + N
Sbjct: 36 GAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94
Query: 62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVD 91
+ I++ TI L +++ + ++ +D
Sbjct: 95 NTIEM-------TTITALAHINGVILFIID 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,899,217
Number of Sequences: 62578
Number of extensions: 325683
Number of successful extensions: 733
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 33
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)