BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024573
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J6G|A Chain A, Faeg From F4ac Etec Strain 5_95, Produced In Tobacco Plant
Chloroplast
Length = 266
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 193 VEGPLRLKEEYIEG-ILESPTVIEETIPEQLKGAFNQAVTTVQQLPAPIRDAIS 245
V G R EY +G ++ + + + ++ FNQAVTT Q AP+ AI+
Sbjct: 211 VAGSYRENMEYTDGNVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAIT 264
>pdb|2J6R|A Chain A, Faeg From F4ac Etec Strain Gis26, Produced In Tobacco
Plant Chloroplast
Length = 266
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 193 VEGPLRLKEEYIEG-ILESPTVIEETIPEQLKGAFNQAVTTVQQLPAPIRDAIS 245
V G R EY +G ++ + + + ++ FNQAVTT Q AP+ AI+
Sbjct: 211 VAGSYRENMEYTDGTVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAIT 264
>pdb|3GFU|D Chain D, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
pdb|3GFU|B Chain B, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
Length = 251
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 193 VEGPLRLKEEYIEG-ILESPTVIEETIPEQLKGAFNQAVTTVQQLPAPIRDAIS 245
V G R EY +G ++ + + + ++ FNQAVTT Q AP+ AI+
Sbjct: 196 VAGSYRENMEYTDGNVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAIT 249
>pdb|2J6R|B Chain B, Faeg From F4ac Etec Strain Gis26, Produced In Tobacco
Plant Chloroplast
Length = 266
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 193 VEGPLRLKEEYIEG-ILESPTVIEETIPEQLKGAFNQAVTTVQQLPAPIRDAIS 245
V G R EY +G ++ + + + ++ FNQAVTT Q AP+ AI+
Sbjct: 211 VAGSYRENMEYTDGTVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAIT 264
>pdb|3OTN|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bdi_3964)
From Parabacteroides Distasonis Atcc 8503 At 1.95 A
Resolution
pdb|3OTN|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bdi_3964)
From Parabacteroides Distasonis Atcc 8503 At 1.95 A
Resolution
Length = 482
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 91 AGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWF 133
A T N Q ID+ +I G L P + S FLE W+ +F
Sbjct: 374 ADGTPNQQSIDIVNQIRGRAGLAPFKQTNASAFLEEVWDQRYF 416
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 72 AKESLLLAFK---DAGGFEA--LVAGKTTNMQQIDVNERITGLERL 112
AKE ++ A K DA GFE + GK +MQ ID+ E +T +E L
Sbjct: 336 AKELIIRATKAGYDALGFEGGEIAVGKDADMQLIDLPEGLTNVEDL 381
>pdb|2BSG|A Chain A, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
pdb|2BSG|B Chain B, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
pdb|2BSG|C Chain C, The Modeled Structure Of Fibritin (Gpwac) Of Bacteriophage
T4 Based On Cryo-Em Reconstruction Of The Extended Tail
Of Bacteriophage T4
Length = 487
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 179 NSIESKFSFSTKLLVEGPLRLKEEYIEGILESPTVIE-----ETIPEQLKGAFNQAVTTV 233
NSI + + +T + L L + GI + TVIE + IP +KG T++
Sbjct: 263 NSIITSVNTNTDNIASINLELNQSG--GIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSI 320
Query: 234 QQLPAPIRDAISGGLRIPLS 253
+ L + + S GLR +S
Sbjct: 321 ESLNGIVGENTSSGLRANVS 340
>pdb|3GEW|D Chain D, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
pdb|3GEW|A Chain A, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
Length = 253
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 EQLKGAFNQAVTTVQQLPAPIRDAIS 245
+ ++ FNQAVTT Q AP+ AI+
Sbjct: 226 QTIEATFNQAVTTSTQWSAPLNVAIT 251
>pdb|3HLR|A Chain A, Donor Strand Complemented Faeg Of F4ad Fimbriae
Length = 276
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 EQLKGAFNQAVTTVQQLPAPIRDAIS 245
+ ++ FNQAVTT Q AP+ AI+
Sbjct: 218 QTIEATFNQAVTTSTQWSAPLNVAIT 243
>pdb|3GGH|A Chain A, Donor Strand Complemented Faeg Of F4ad Fimbriae
pdb|3GGH|B Chain B, Donor Strand Complemented Faeg Of F4ad Fimbriae
Length = 275
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 EQLKGAFNQAVTTVQQLPAPIRDAIS 245
+ ++ FNQAVTT Q AP+ AI+
Sbjct: 227 QTIEATFNQAVTTSTQWSAPLNVAIT 252
>pdb|3GEA|A Chain A, Donor Strand Complemented Faeg Monomer Of F4 Variant Ad
pdb|3GEA|B Chain B, Donor Strand Complemented Faeg Monomer Of F4 Variant Ad
Length = 274
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 EQLKGAFNQAVTTVQQLPAPIRDAIS 245
+ ++ FNQAVTT Q AP+ AI+
Sbjct: 226 QTIEATFNQAVTTSTQWSAPLNVAIT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,325,624
Number of Sequences: 62578
Number of extensions: 292268
Number of successful extensions: 632
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 11
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)